Multiple sequence alignment - TraesCS2D01G016900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2D01G016900 chr2D 100.000 9891 0 0 1 9891 8290251 8280361 0.000000e+00 18266.0
1 TraesCS2D01G016900 chr2D 92.093 3402 150 37 5574 8911 7977191 7973845 0.000000e+00 4682.0
2 TraesCS2D01G016900 chr2D 85.096 624 59 21 9100 9702 7973773 7973163 3.060000e-169 606.0
3 TraesCS2D01G016900 chr2D 89.474 152 11 2 3291 3442 8286732 8286586 4.720000e-43 187.0
4 TraesCS2D01G016900 chr2D 89.474 152 11 2 3520 3666 8286961 8286810 4.720000e-43 187.0
5 TraesCS2D01G016900 chr2D 94.253 87 4 1 9017 9102 302248098 302248012 2.240000e-26 132.0
6 TraesCS2D01G016900 chr2D 93.333 90 4 2 9017 9105 382456025 382455937 2.240000e-26 132.0
7 TraesCS2D01G016900 chr2D 100.000 54 0 0 8963 9016 8281237 8281184 6.320000e-17 100.0
8 TraesCS2D01G016900 chrUn 90.940 3874 246 63 3438 7279 11742508 11746308 0.000000e+00 5112.0
9 TraesCS2D01G016900 chrUn 84.739 2857 281 98 663 3439 11739637 11742418 0.000000e+00 2717.0
10 TraesCS2D01G016900 chrUn 91.685 914 65 8 8014 8922 11747164 11748071 0.000000e+00 1256.0
11 TraesCS2D01G016900 chrUn 85.161 620 67 16 8238 8848 389770255 389769652 6.570000e-171 612.0
12 TraesCS2D01G016900 chrUn 84.912 623 70 15 8235 8848 353613867 353614474 8.490000e-170 608.0
13 TraesCS2D01G016900 chrUn 87.344 482 49 10 7301 7779 11746364 11746836 8.740000e-150 542.0
14 TraesCS2D01G016900 chrUn 89.902 307 25 3 9100 9401 11748101 11748406 3.350000e-104 390.0
15 TraesCS2D01G016900 chrUn 81.704 399 29 22 1 364 11738872 11739261 9.720000e-75 292.0
16 TraesCS2D01G016900 chrUn 81.620 321 35 18 3520 3824 11742275 11742587 2.760000e-60 244.0
17 TraesCS2D01G016900 chrUn 85.153 229 29 4 7423 7648 353613255 353613481 7.730000e-56 230.0
18 TraesCS2D01G016900 chrUn 84.716 229 30 4 7423 7648 372506675 372506901 3.600000e-54 224.0
19 TraesCS2D01G016900 chrUn 84.921 126 16 3 7145 7268 353613002 353613126 3.750000e-24 124.0
20 TraesCS2D01G016900 chrUn 84.921 126 16 3 7145 7268 372506422 372506546 3.750000e-24 124.0
21 TraesCS2D01G016900 chr2B 90.387 3880 259 49 3441 7279 4652169 4648363 0.000000e+00 4994.0
22 TraesCS2D01G016900 chr2B 89.770 1955 151 27 1527 3443 4654394 4652451 0.000000e+00 2457.0
23 TraesCS2D01G016900 chr2B 93.399 712 35 6 8228 8939 4647209 4646510 0.000000e+00 1044.0
24 TraesCS2D01G016900 chr2B 91.188 783 40 12 7230 7991 719774247 719773473 0.000000e+00 1037.0
25 TraesCS2D01G016900 chr2B 86.667 615 53 12 8276 8882 4631582 4630989 0.000000e+00 654.0
26 TraesCS2D01G016900 chr2B 91.755 473 25 3 7698 8156 4632117 4631645 0.000000e+00 645.0
27 TraesCS2D01G016900 chr2B 83.857 700 56 33 420 1097 4655591 4654927 1.830000e-171 614.0
28 TraesCS2D01G016900 chr2B 87.016 516 43 12 9378 9891 4646263 4645770 2.410000e-155 560.0
29 TraesCS2D01G016900 chr2B 96.176 340 12 1 7362 7701 4632577 4632239 1.120000e-153 555.0
30 TraesCS2D01G016900 chr2B 87.137 482 49 13 7301 7779 4648307 4647836 1.460000e-147 534.0
31 TraesCS2D01G016900 chr2B 88.587 184 20 1 6311 6494 4619008 4618826 1.290000e-53 222.0
32 TraesCS2D01G016900 chr2B 82.520 246 28 14 9099 9336 4646490 4646252 1.680000e-47 202.0
33 TraesCS2D01G016900 chr2B 82.883 222 33 4 8014 8231 4647509 4647289 2.820000e-45 195.0
34 TraesCS2D01G016900 chr2B 90.132 152 10 3 3291 3442 4652090 4651944 1.010000e-44 193.0
35 TraesCS2D01G016900 chr2B 87.500 152 13 3 3520 3666 4652602 4652452 4.750000e-38 171.0
36 TraesCS2D01G016900 chr2B 88.406 138 15 1 8965 9101 774661905 774662042 2.210000e-36 165.0
37 TraesCS2D01G016900 chr2B 87.156 109 12 1 9594 9702 4645957 4645851 1.350000e-23 122.0
38 TraesCS2D01G016900 chr2B 89.412 85 9 0 3662 3746 594834990 594834906 3.780000e-19 108.0
39 TraesCS2D01G016900 chr6B 84.712 1040 120 19 1114 2138 40320812 40321827 0.000000e+00 1003.0
40 TraesCS2D01G016900 chr6B 88.764 178 16 2 1961 2138 30364096 30363923 2.160000e-51 215.0
41 TraesCS2D01G016900 chr6B 92.381 105 8 0 2034 2138 655258289 655258393 6.190000e-32 150.0
42 TraesCS2D01G016900 chr3B 84.069 1042 123 26 1114 2138 601117288 601118303 0.000000e+00 965.0
43 TraesCS2D01G016900 chr3B 88.701 177 16 2 1962 2138 769346106 769346278 7.780000e-51 213.0
44 TraesCS2D01G016900 chr3B 91.398 93 6 2 9010 9101 55740968 55741059 1.040000e-24 126.0
45 TraesCS2D01G016900 chr3B 95.312 64 2 1 8956 9019 450376651 450376589 6.320000e-17 100.0
46 TraesCS2D01G016900 chr5A 89.308 318 32 2 7300 7616 18688045 18688361 2.000000e-106 398.0
47 TraesCS2D01G016900 chr4B 87.952 249 27 3 7302 7549 575895415 575895661 3.490000e-74 291.0
48 TraesCS2D01G016900 chr7B 88.764 178 16 2 1961 2138 64764372 64764199 2.160000e-51 215.0
49 TraesCS2D01G016900 chr7B 92.308 65 5 0 8955 9019 660360595 660360531 1.060000e-14 93.5
50 TraesCS2D01G016900 chr1B 87.640 178 18 2 1961 2138 549464826 549464653 4.680000e-48 204.0
51 TraesCS2D01G016900 chr1B 95.294 85 3 1 9015 9098 151463396 151463480 6.230000e-27 134.0
52 TraesCS2D01G016900 chr1B 93.333 90 4 2 9017 9105 527834240 527834328 2.240000e-26 132.0
53 TraesCS2D01G016900 chr1B 98.276 58 1 0 8959 9016 151463392 151463449 1.760000e-17 102.0
54 TraesCS2D01G016900 chr2A 93.069 101 7 0 9253 9353 5782335 5782235 2.230000e-31 148.0
55 TraesCS2D01G016900 chr2A 94.253 87 4 1 9016 9101 632952995 632952909 2.240000e-26 132.0
56 TraesCS2D01G016900 chr2A 95.238 42 2 0 3660 3701 97865226 97865267 6.410000e-07 67.6
57 TraesCS2D01G016900 chr3D 92.391 92 5 2 9015 9105 302930384 302930474 8.060000e-26 130.0
58 TraesCS2D01G016900 chr3A 90.526 95 7 2 9008 9101 427762747 427762654 3.750000e-24 124.0
59 TraesCS2D01G016900 chr1D 96.610 59 2 0 8961 9019 29724154 29724096 2.270000e-16 99.0
60 TraesCS2D01G016900 chr4D 93.750 64 3 1 8957 9019 245478432 245478369 2.940000e-15 95.3
61 TraesCS2D01G016900 chr4D 95.082 61 2 1 8957 9016 282079938 282079998 2.940000e-15 95.3
62 TraesCS2D01G016900 chr4A 93.443 61 4 0 8953 9013 511040473 511040533 3.800000e-14 91.6
63 TraesCS2D01G016900 chr1A 93.548 62 3 1 8955 9016 95850267 95850327 3.800000e-14 91.6
64 TraesCS2D01G016900 chr6A 84.615 91 10 1 7193 7279 390567767 390567857 4.920000e-13 87.9


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2D01G016900 chr2D 8280361 8290251 9890 True 18266.000000 18266 100.000000 1 9891 1 chr2D.!!$R1 9890
1 TraesCS2D01G016900 chr2D 7973163 7977191 4028 True 2644.000000 4682 88.594500 5574 9702 2 chr2D.!!$R5 4128
2 TraesCS2D01G016900 chrUn 11738872 11748406 9534 False 1507.571429 5112 86.847714 1 9401 7 chrUn.!!$F1 9400
3 TraesCS2D01G016900 chrUn 389769652 389770255 603 True 612.000000 612 85.161000 8238 8848 1 chrUn.!!$R1 610
4 TraesCS2D01G016900 chrUn 353613002 353614474 1472 False 320.666667 608 84.995333 7145 8848 3 chrUn.!!$F2 1703
5 TraesCS2D01G016900 chr2B 719773473 719774247 774 True 1037.000000 1037 91.188000 7230 7991 1 chr2B.!!$R3 761
6 TraesCS2D01G016900 chr2B 4645770 4655591 9821 True 1007.818182 4994 87.432455 420 9891 11 chr2B.!!$R5 9471
7 TraesCS2D01G016900 chr2B 4630989 4632577 1588 True 618.000000 654 91.532667 7362 8882 3 chr2B.!!$R4 1520
8 TraesCS2D01G016900 chr6B 40320812 40321827 1015 False 1003.000000 1003 84.712000 1114 2138 1 chr6B.!!$F1 1024
9 TraesCS2D01G016900 chr3B 601117288 601118303 1015 False 965.000000 965 84.069000 1114 2138 1 chr3B.!!$F2 1024

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
112 113 0.034960 TGGAGTCGGGTGAGAGAGAG 60.035 60.000 0.00 0.0 0.00 3.20 F
235 236 0.035739 GACGGCTGAGGGTGGTTTTA 59.964 55.000 0.00 0.0 0.00 1.52 F
948 1115 0.037232 GATACGATACAGGCAGCCCC 60.037 60.000 8.22 0.0 0.00 5.80 F
2164 2529 0.322816 GTTGGATTGGCTCTGCAGGA 60.323 55.000 15.13 0.0 0.00 3.86 F
2661 3028 0.110486 AATGGGCAAAGGAGACACGT 59.890 50.000 0.00 0.0 0.00 4.49 F
3092 3461 0.251297 AGTGCAGCACCATGCCTTTA 60.251 50.000 22.41 0.0 46.52 1.85 F
4111 4789 0.039798 CACGTGCTGCTGAAATGCTT 60.040 50.000 0.82 0.0 0.00 3.91 F
4861 5540 0.323629 TGTTGAATCACCCCCTCGTC 59.676 55.000 0.00 0.0 0.00 4.20 F
5625 6310 0.185901 AACATGAAGTGCCTGGGTGT 59.814 50.000 0.00 0.0 0.00 4.16 F
5631 6316 0.466189 AAGTGCCTGGGTGTGTGAAG 60.466 55.000 0.00 0.0 0.00 3.02 F
5737 6434 1.217882 GTTGTGTCGGTCCAGAACAG 58.782 55.000 6.03 0.0 38.21 3.16 F
7099 7838 3.319137 TTGAGGAGACCAAGAATGACG 57.681 47.619 0.00 0.0 0.00 4.35 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1711 2053 0.588252 GTGCAGCGCGAATATGGAAT 59.412 50.000 12.10 0.00 0.00 3.01 R
1878 2224 0.601841 AAAACCGTAGCGTGTCCCTG 60.602 55.000 0.00 0.00 0.00 4.45 R
2579 2946 0.462375 ACCGTTGAACCCTTTTTGCC 59.538 50.000 0.00 0.00 0.00 4.52 R
3074 3443 0.171903 CTAAAGGCATGGTGCTGCAC 59.828 55.000 24.02 24.02 44.28 4.57 R
4111 4789 0.322456 AAGCACGCTTCTGGGCAATA 60.322 50.000 0.00 0.00 0.00 1.90 R
4861 5540 1.753073 GGGTGAGGCATTTTCATGAGG 59.247 52.381 0.00 0.00 31.07 3.86 R
5620 6305 0.106708 TCAGCAGACTTCACACACCC 59.893 55.000 0.00 0.00 0.00 4.61 R
5707 6393 2.897969 ACCGACACAACATTCTCCTAGT 59.102 45.455 0.00 0.00 0.00 2.57 R
7038 7777 0.679002 CATGGTCAGAACCCAGCAGG 60.679 60.000 0.00 0.00 45.83 4.85 R
7253 7994 5.357742 TGAACTGGAAGCTGCTGATTATA 57.642 39.130 1.35 0.00 37.60 0.98 R
7479 8262 5.467735 TCATGTCAACACATTCAGAGTTCAG 59.532 40.000 0.00 0.00 40.66 3.02 R
8913 10065 1.275657 GACGCGCAAATATCACCCG 59.724 57.895 5.73 0.00 0.00 5.28 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
76 77 1.403687 GGAGAGGGGTGGAGGATTCG 61.404 65.000 0.00 0.00 0.00 3.34
77 78 0.397254 GAGAGGGGTGGAGGATTCGA 60.397 60.000 0.00 0.00 0.00 3.71
78 79 0.397816 AGAGGGGTGGAGGATTCGAG 60.398 60.000 0.00 0.00 0.00 4.04
79 80 1.383248 AGGGGTGGAGGATTCGAGG 60.383 63.158 0.00 0.00 0.00 4.63
80 81 1.382695 GGGGTGGAGGATTCGAGGA 60.383 63.158 0.00 0.00 0.00 3.71
81 82 1.403687 GGGGTGGAGGATTCGAGGAG 61.404 65.000 0.00 0.00 0.00 3.69
96 97 1.219213 GAGGAGGAGGAGGAGATTGGA 59.781 57.143 0.00 0.00 0.00 3.53
104 105 0.461961 GAGGAGATTGGAGTCGGGTG 59.538 60.000 0.00 0.00 0.00 4.61
106 107 0.461961 GGAGATTGGAGTCGGGTGAG 59.538 60.000 0.00 0.00 0.00 3.51
107 108 1.475403 GAGATTGGAGTCGGGTGAGA 58.525 55.000 0.00 0.00 0.00 3.27
108 109 1.407258 GAGATTGGAGTCGGGTGAGAG 59.593 57.143 0.00 0.00 0.00 3.20
109 110 1.006043 AGATTGGAGTCGGGTGAGAGA 59.994 52.381 0.00 0.00 0.00 3.10
111 112 0.404426 TTGGAGTCGGGTGAGAGAGA 59.596 55.000 0.00 0.00 0.00 3.10
112 113 0.034960 TGGAGTCGGGTGAGAGAGAG 60.035 60.000 0.00 0.00 0.00 3.20
115 116 1.208844 AGTCGGGTGAGAGAGAGGGA 61.209 60.000 0.00 0.00 0.00 4.20
116 117 0.750182 GTCGGGTGAGAGAGAGGGAG 60.750 65.000 0.00 0.00 0.00 4.30
176 177 2.626266 GGGAATCCAACGGAAAACTGTT 59.374 45.455 0.09 0.00 34.34 3.16
183 184 1.362355 CGGAAAACTGTTGGGTGGC 59.638 57.895 0.00 0.00 0.00 5.01
185 186 1.104577 GGAAAACTGTTGGGTGGCGA 61.105 55.000 0.00 0.00 0.00 5.54
228 229 3.148279 GGATCGACGGCTGAGGGT 61.148 66.667 0.00 0.00 0.00 4.34
230 231 3.432051 GATCGACGGCTGAGGGTGG 62.432 68.421 0.00 0.00 0.00 4.61
233 234 2.430367 GACGGCTGAGGGTGGTTT 59.570 61.111 0.00 0.00 0.00 3.27
234 235 1.228154 GACGGCTGAGGGTGGTTTT 60.228 57.895 0.00 0.00 0.00 2.43
235 236 0.035739 GACGGCTGAGGGTGGTTTTA 59.964 55.000 0.00 0.00 0.00 1.52
237 238 0.958876 CGGCTGAGGGTGGTTTTACC 60.959 60.000 0.00 0.00 40.10 2.85
240 241 0.958876 CTGAGGGTGGTTTTACCGGC 60.959 60.000 0.00 0.00 42.58 6.13
242 243 0.614812 GAGGGTGGTTTTACCGGCTA 59.385 55.000 0.00 0.00 42.58 3.93
243 244 0.616891 AGGGTGGTTTTACCGGCTAG 59.383 55.000 0.00 0.00 42.58 3.42
245 246 1.445871 GGTGGTTTTACCGGCTAGTG 58.554 55.000 0.00 0.00 42.58 2.74
247 248 2.497138 GTGGTTTTACCGGCTAGTGTT 58.503 47.619 0.00 0.00 42.58 3.32
248 249 3.556843 GGTGGTTTTACCGGCTAGTGTTA 60.557 47.826 0.00 0.00 42.58 2.41
249 250 4.256110 GTGGTTTTACCGGCTAGTGTTAT 58.744 43.478 0.00 0.00 42.58 1.89
286 308 1.483415 GATGGCATGCCTTGTTTGGAT 59.517 47.619 35.53 19.12 36.94 3.41
287 309 0.896923 TGGCATGCCTTGTTTGGATC 59.103 50.000 35.53 6.75 36.94 3.36
305 328 2.157834 TCGCGGTTACACTTGTTGAT 57.842 45.000 6.13 0.00 0.00 2.57
312 335 5.064198 GCGGTTACACTTGTTGATTATGCTA 59.936 40.000 0.00 0.00 0.00 3.49
343 377 7.178274 AGTGAGTAATTTATTGTTGGGATTGCA 59.822 33.333 0.00 0.00 0.00 4.08
349 383 3.848272 ATTGTTGGGATTGCAGTTACG 57.152 42.857 0.00 0.00 0.00 3.18
367 411 1.991611 GCTAATTAACGCGCGCACG 60.992 57.895 32.58 17.40 44.07 5.34
384 428 2.750237 GCATTTTCGCCCTCGGGT 60.750 61.111 3.54 0.00 37.65 5.28
389 433 2.175035 TTTTCGCCCTCGGGTGTAGG 62.175 60.000 14.78 0.00 45.37 3.18
395 439 4.189188 CTCGGGTGTAGGCGACGG 62.189 72.222 0.00 0.00 0.00 4.79
411 455 3.338676 GGCGGCGGCGAATAGAAG 61.339 66.667 36.87 3.31 41.24 2.85
412 456 2.279252 GCGGCGGCGAATAGAAGA 60.279 61.111 36.87 0.00 0.00 2.87
415 459 1.301009 GGCGGCGAATAGAAGAGGG 60.301 63.158 12.98 0.00 0.00 4.30
416 460 1.740285 GCGGCGAATAGAAGAGGGA 59.260 57.895 12.98 0.00 0.00 4.20
417 461 0.104304 GCGGCGAATAGAAGAGGGAA 59.896 55.000 12.98 0.00 0.00 3.97
484 529 1.143838 CGGGAAGATGGCGATCACA 59.856 57.895 11.55 0.00 0.00 3.58
522 628 6.633500 TTCTGTTTTCGTCATGAAATTCCT 57.367 33.333 0.00 0.00 45.62 3.36
529 635 7.857734 TTTCGTCATGAAATTCCTATGCTTA 57.142 32.000 0.00 0.00 41.59 3.09
567 694 6.319405 GCCATCCTTGAATTGCCAATAAAAAT 59.681 34.615 0.00 0.00 0.00 1.82
601 728 1.749634 ACCCCTCTCGATGAACGTTAG 59.250 52.381 0.00 0.00 43.13 2.34
625 757 1.296056 ACGACATTACCGTTGCCTGC 61.296 55.000 0.00 0.00 36.83 4.85
662 801 2.583868 GCCACACACGACGTCACA 60.584 61.111 17.16 0.00 0.00 3.58
663 802 2.585869 GCCACACACGACGTCACAG 61.586 63.158 17.16 6.85 0.00 3.66
664 803 1.949133 CCACACACGACGTCACAGG 60.949 63.158 17.16 4.57 0.00 4.00
666 805 2.122797 ACACACGACGTCACAGGGA 61.123 57.895 17.16 0.00 0.00 4.20
667 806 1.371758 CACACGACGTCACAGGGAG 60.372 63.158 17.16 0.00 0.00 4.30
668 807 1.527611 ACACGACGTCACAGGGAGA 60.528 57.895 17.16 0.00 0.00 3.71
675 820 1.339631 ACGTCACAGGGAGAGAGAGAG 60.340 57.143 0.00 0.00 0.00 3.20
800 949 4.065281 CCGCCGTCGAAGGGAAGT 62.065 66.667 19.34 0.00 38.10 3.01
805 954 2.669240 GTCGAAGGGAAGTGGGGG 59.331 66.667 0.00 0.00 0.00 5.40
832 982 2.284995 GCCTGTGGGAGAGAGGGT 60.285 66.667 0.00 0.00 35.50 4.34
864 1014 1.929230 TCAAACGCGTTGACAGAAGA 58.071 45.000 27.34 11.74 41.47 2.87
866 1016 2.673862 TCAAACGCGTTGACAGAAGAAA 59.326 40.909 27.34 0.00 41.47 2.52
867 1017 2.732001 AACGCGTTGACAGAAGAAAC 57.268 45.000 26.00 0.00 0.00 2.78
869 1019 0.111266 CGCGTTGACAGAAGAAACGG 60.111 55.000 0.00 0.00 45.08 4.44
870 1020 1.214367 GCGTTGACAGAAGAAACGGA 58.786 50.000 8.95 0.00 45.08 4.69
871 1021 1.070776 GCGTTGACAGAAGAAACGGAC 60.071 52.381 8.95 0.00 45.08 4.79
875 1025 0.662374 GACAGAAGAAACGGACGCGA 60.662 55.000 15.93 0.00 0.00 5.87
900 1050 3.698463 GGTCGTCGTTGGTGTGCG 61.698 66.667 0.00 0.00 0.00 5.34
901 1051 4.349871 GTCGTCGTTGGTGTGCGC 62.350 66.667 0.00 0.00 0.00 6.09
904 1054 3.031457 GTCGTTGGTGTGCGCGTA 61.031 61.111 8.43 0.00 0.00 4.42
905 1055 2.731721 TCGTTGGTGTGCGCGTAG 60.732 61.111 8.43 0.00 0.00 3.51
946 1113 0.314302 ACGATACGATACAGGCAGCC 59.686 55.000 1.84 1.84 0.00 4.85
947 1114 0.388649 CGATACGATACAGGCAGCCC 60.389 60.000 8.22 0.00 0.00 5.19
948 1115 0.037232 GATACGATACAGGCAGCCCC 60.037 60.000 8.22 0.00 0.00 5.80
1015 1186 2.052690 GCTGCCGGTACAGAGGAGA 61.053 63.158 12.73 0.00 40.25 3.71
1422 1751 1.022735 TGATCTCGCTCGGTACCTTC 58.977 55.000 10.90 0.00 0.00 3.46
1433 1762 1.802365 CGGTACCTTCCGTTTTCCTTG 59.198 52.381 10.90 0.00 44.77 3.61
1449 1778 2.000447 CCTTGTGCTCGCCTAGTTTAC 59.000 52.381 0.00 0.00 0.00 2.01
1463 1792 1.012486 GTTTACCTGTCGGACCGCTG 61.012 60.000 9.66 8.47 0.00 5.18
1504 1835 5.981315 CGTTCAGTACTTGTTCTTTACCTCA 59.019 40.000 0.00 0.00 0.00 3.86
1511 1842 7.873505 AGTACTTGTTCTTTACCTCATCTGTTC 59.126 37.037 0.00 0.00 0.00 3.18
1513 1844 7.963532 ACTTGTTCTTTACCTCATCTGTTCTA 58.036 34.615 0.00 0.00 0.00 2.10
1514 1845 8.598041 ACTTGTTCTTTACCTCATCTGTTCTAT 58.402 33.333 0.00 0.00 0.00 1.98
1515 1846 9.442047 CTTGTTCTTTACCTCATCTGTTCTATT 57.558 33.333 0.00 0.00 0.00 1.73
1520 1851 9.547753 TCTTTACCTCATCTGTTCTATTATTGC 57.452 33.333 0.00 0.00 0.00 3.56
1521 1852 8.677148 TTTACCTCATCTGTTCTATTATTGCC 57.323 34.615 0.00 0.00 0.00 4.52
1526 1857 6.763355 TCATCTGTTCTATTATTGCCTCTCC 58.237 40.000 0.00 0.00 0.00 3.71
1547 1878 2.618241 CCTGTTTTTGCTAGCTGTGTCA 59.382 45.455 17.23 8.96 0.00 3.58
1555 1886 1.396301 GCTAGCTGTGTCATTGTGCTC 59.604 52.381 7.70 0.00 35.47 4.26
1559 1890 1.888215 CTGTGTCATTGTGCTCTGGT 58.112 50.000 0.00 0.00 0.00 4.00
1580 1911 7.444183 TCTGGTGACAACGAGAAATCTTTAATT 59.556 33.333 0.00 0.00 38.11 1.40
1583 1914 7.860872 GGTGACAACGAGAAATCTTTAATTTGT 59.139 33.333 0.00 0.00 0.00 2.83
1584 1915 8.892905 GTGACAACGAGAAATCTTTAATTTGTC 58.107 33.333 0.00 0.00 40.34 3.18
1630 1961 3.675228 GCTTGTGATCCAAATGCAGAAGG 60.675 47.826 0.00 0.00 34.58 3.46
1702 2044 1.171592 TCCCCCAATCCAAAAAGGGA 58.828 50.000 0.00 0.00 44.30 4.20
1711 2053 6.013812 CCCAATCCAAAAAGGGAAACATTAGA 60.014 38.462 0.00 0.00 44.30 2.10
1726 2072 4.569943 ACATTAGATTCCATATTCGCGCT 58.430 39.130 5.56 0.00 0.00 5.92
1736 2082 1.556564 TATTCGCGCTGCACTAGTTC 58.443 50.000 5.56 0.00 0.00 3.01
1739 2085 1.444383 CGCGCTGCACTAGTTCTCA 60.444 57.895 5.56 0.00 0.00 3.27
1744 2090 3.775202 CGCTGCACTAGTTCTCAGTTAT 58.225 45.455 14.45 0.00 0.00 1.89
1791 2137 2.734175 CGTGCTGCTCCTCGTGTATTTA 60.734 50.000 0.00 0.00 0.00 1.40
1812 2158 3.505464 TTAAGCAGCGGTCTCTTACTC 57.495 47.619 5.62 0.00 0.00 2.59
1819 2165 4.170256 CAGCGGTCTCTTACTCTTCTTTC 58.830 47.826 0.00 0.00 0.00 2.62
1828 2174 6.376018 TCTCTTACTCTTCTTTCTGTAGCTCC 59.624 42.308 0.00 0.00 0.00 4.70
1837 2183 2.750237 TGTAGCTCCGCTGCTCGA 60.750 61.111 3.70 0.00 41.66 4.04
1866 2212 1.003696 AGCCAGAGTAGAAAACAGGGC 59.996 52.381 0.00 0.00 39.65 5.19
1878 2224 2.134789 AACAGGGCTTCACATGATCC 57.865 50.000 0.00 0.00 0.00 3.36
1891 2237 0.753262 ATGATCCAGGGACACGCTAC 59.247 55.000 0.00 0.00 0.00 3.58
1906 2252 1.583495 GCTACGGTTTTCAGGTGGGC 61.583 60.000 0.00 0.00 0.00 5.36
1969 2316 5.131642 TGGAGAACTGCTGAATCCTGATTAT 59.868 40.000 0.00 0.00 0.00 1.28
1974 2321 7.877097 AGAACTGCTGAATCCTGATTATACATC 59.123 37.037 0.00 0.00 0.00 3.06
1982 2329 8.591940 TGAATCCTGATTATACATCTCTCTTGG 58.408 37.037 0.00 0.00 0.00 3.61
2001 2363 2.762887 TGGTGGCAAAGTGTTGAATTGA 59.237 40.909 0.00 0.00 36.83 2.57
2007 2369 5.697178 TGGCAAAGTGTTGAATTGAATCATG 59.303 36.000 0.00 0.00 36.83 3.07
2008 2370 5.697633 GGCAAAGTGTTGAATTGAATCATGT 59.302 36.000 0.00 0.00 36.83 3.21
2009 2371 6.867816 GGCAAAGTGTTGAATTGAATCATGTA 59.132 34.615 0.00 0.00 36.83 2.29
2050 2412 5.715753 TCCTTAAGTCCTACTCTTCAAGGTC 59.284 44.000 0.97 0.00 34.30 3.85
2092 2457 5.561679 ACCTTCCTAAGCTTTAAGTTCTGG 58.438 41.667 3.20 0.24 0.00 3.86
2127 2492 6.183360 GCTAGTGATAGAAAACTTCAGCCTTG 60.183 42.308 0.00 0.00 0.00 3.61
2138 2503 3.259625 ACTTCAGCCTTGAGAGTACCTTC 59.740 47.826 0.00 0.00 34.15 3.46
2160 2525 3.282021 TGATAAGTTGGATTGGCTCTGC 58.718 45.455 0.00 0.00 0.00 4.26
2161 2526 2.877097 TAAGTTGGATTGGCTCTGCA 57.123 45.000 0.00 0.00 0.00 4.41
2164 2529 0.322816 GTTGGATTGGCTCTGCAGGA 60.323 55.000 15.13 0.00 0.00 3.86
2175 2540 2.681976 GCTCTGCAGGAATCCTTGCTTA 60.682 50.000 15.13 10.02 32.01 3.09
2189 2554 2.433868 TGCTTAATCGCTATCCGTCC 57.566 50.000 0.00 0.00 38.35 4.79
2200 2565 3.280295 GCTATCCGTCCTGCTAGCTATA 58.720 50.000 17.23 0.00 34.98 1.31
2236 2601 7.122715 TGGATGGTTATTTATTGGTTAGCTGT 58.877 34.615 0.00 0.00 0.00 4.40
2252 2617 3.230134 AGCTGTGTGAGGGCATTTTAAA 58.770 40.909 0.00 0.00 0.00 1.52
2278 2643 9.062524 ACAGTTGTACATTTTACAAGATAAGCA 57.937 29.630 0.00 0.00 38.01 3.91
2279 2644 9.891828 CAGTTGTACATTTTACAAGATAAGCAA 57.108 29.630 0.00 0.00 38.01 3.91
2322 2689 3.833650 TGATGATTGTTTGCCATCCTTGT 59.166 39.130 0.00 0.00 36.70 3.16
2323 2690 3.940209 TGATTGTTTGCCATCCTTGTC 57.060 42.857 0.00 0.00 0.00 3.18
2327 2694 3.448093 TGTTTGCCATCCTTGTCCATA 57.552 42.857 0.00 0.00 0.00 2.74
2336 2703 5.413833 GCCATCCTTGTCCATAGATTATGTG 59.586 44.000 0.00 0.00 34.36 3.21
2338 2705 7.679783 CCATCCTTGTCCATAGATTATGTGTA 58.320 38.462 0.00 0.00 34.36 2.90
2361 2728 6.664428 ACCAAAATGTGTAGCTACCATTTT 57.336 33.333 33.01 33.01 41.79 1.82
2377 2744 5.841810 ACCATTTTTGTGTGTCCTAACATG 58.158 37.500 0.00 0.00 37.81 3.21
2379 2746 5.920273 CCATTTTTGTGTGTCCTAACATGAC 59.080 40.000 0.00 0.00 37.81 3.06
2579 2946 3.694535 GTGTGATACACTACCCTCTCG 57.305 52.381 4.92 0.00 45.27 4.04
2661 3028 0.110486 AATGGGCAAAGGAGACACGT 59.890 50.000 0.00 0.00 0.00 4.49
2743 3110 2.356665 TTGCTGGGCACTCTGTTTAA 57.643 45.000 0.00 0.00 38.71 1.52
2861 3230 3.813166 CGGCCGTTATGTCTATGGAAAAT 59.187 43.478 19.50 0.00 0.00 1.82
2913 3282 7.551262 ACAAAACTGCAACTATCGTATTATCCA 59.449 33.333 0.00 0.00 0.00 3.41
2961 3330 6.094464 CACTTCCATCACAGCTTAATGAATGA 59.906 38.462 2.10 0.00 0.00 2.57
2983 3352 6.908825 TGATAAACCTTGTTACTGATGCAAC 58.091 36.000 0.00 0.00 0.00 4.17
3052 3421 4.222124 AGATGCCTCACCTTTAATCGTT 57.778 40.909 0.00 0.00 0.00 3.85
3055 3424 2.817258 TGCCTCACCTTTAATCGTTTGG 59.183 45.455 0.00 0.00 0.00 3.28
3069 3438 1.753956 GTTTGGTAGCTTGTGCAACG 58.246 50.000 0.00 0.00 42.39 4.10
3074 3443 1.993370 GGTAGCTTGTGCAACGTAGAG 59.007 52.381 0.00 0.00 42.39 2.43
3092 3461 0.251297 AGTGCAGCACCATGCCTTTA 60.251 50.000 22.41 0.00 46.52 1.85
3105 3496 4.096382 CCATGCCTTTAGTGGTGTATTCAC 59.904 45.833 0.00 0.00 43.19 3.18
3163 3554 1.471119 CATTCATGGCTGCTGGTCTT 58.529 50.000 0.00 0.00 0.00 3.01
3196 3587 1.742880 CCCTGAGATGTGGTGTGCG 60.743 63.158 0.00 0.00 0.00 5.34
3214 3605 0.757188 CGATAGAGGCAGTGGACCCT 60.757 60.000 0.00 0.00 39.76 4.34
3243 3634 3.740128 CTCCTTACGCGCTGCCCAT 62.740 63.158 5.73 0.00 0.00 4.00
3265 3656 5.375417 TGATAACAATTCTTGCACACCTG 57.625 39.130 0.00 0.00 0.00 4.00
3297 3688 5.047802 CACCATCTGCCTGATTTAGTGTTTT 60.048 40.000 0.00 0.00 32.05 2.43
3319 3710 2.514458 AGGGGTCTGCAGGTTTATTG 57.486 50.000 15.13 0.00 0.00 1.90
3348 3739 6.073314 TGTAGTTCTAGTACTTTGGAGGTGT 58.927 40.000 7.37 0.00 0.00 4.16
3380 3771 4.545823 TTGCTCCTTGTTTTAGAACACG 57.454 40.909 0.00 0.00 45.01 4.49
3468 4143 2.917713 TCCACCTGCCATTGGTAAAT 57.082 45.000 4.26 0.00 35.80 1.40
3532 4207 8.700973 AGCCAATTTCTAAAGTGTTTTTAAGGA 58.299 29.630 2.66 0.00 32.52 3.36
3657 4334 7.869016 TTTGTCGTTTATCTGTCTCACTAAG 57.131 36.000 0.00 0.00 0.00 2.18
3695 4372 9.953825 CTGTTCACTAATATAAGACGTTTTGAC 57.046 33.333 0.83 0.00 0.00 3.18
3696 4373 9.478768 TGTTCACTAATATAAGACGTTTTGACA 57.521 29.630 0.83 0.00 0.00 3.58
3697 4374 9.953825 GTTCACTAATATAAGACGTTTTGACAG 57.046 33.333 0.83 0.00 0.00 3.51
3698 4375 9.701098 TTCACTAATATAAGACGTTTTGACAGT 57.299 29.630 0.83 0.00 0.00 3.55
3699 4376 9.701098 TCACTAATATAAGACGTTTTGACAGTT 57.299 29.630 0.83 0.00 0.00 3.16
3719 4396 7.301068 CAGTTTAAAATGAACTGCCAAAACA 57.699 32.000 10.03 0.00 45.02 2.83
3759 4436 8.446599 ACAGAGGGTGTATTAATTATTTTCCG 57.553 34.615 0.00 0.00 37.75 4.30
3807 4484 9.440773 TTGACTGAGATGTATCCATAAATATGC 57.559 33.333 0.00 0.00 32.40 3.14
3847 4524 9.256228 TCTGTGTGACTATACCTCTAAATTCTT 57.744 33.333 0.00 0.00 0.00 2.52
3856 4533 9.383519 CTATACCTCTAAATTCTTGTTTGAGCA 57.616 33.333 0.00 0.00 0.00 4.26
3952 4630 9.632638 AATAAAGACCATGCTTTGACTATGTAT 57.367 29.630 8.17 0.00 38.47 2.29
3976 4654 2.270352 TCCAGTTTCCGCACTTGATT 57.730 45.000 0.00 0.00 0.00 2.57
4084 4762 8.674607 CCAAAGGAAACAGGTTAGTATTGTATC 58.325 37.037 0.00 0.00 0.00 2.24
4085 4763 9.449719 CAAAGGAAACAGGTTAGTATTGTATCT 57.550 33.333 0.00 0.00 0.00 1.98
4111 4789 0.039798 CACGTGCTGCTGAAATGCTT 60.040 50.000 0.82 0.00 0.00 3.91
4258 4936 8.293157 GGGCTAGTTTATTGCAGATTATTCTTC 58.707 37.037 0.00 0.00 0.00 2.87
4291 4969 5.360714 TGTTTCAGAGCTTGGTTGATCTTTT 59.639 36.000 0.00 0.00 29.40 2.27
4337 5015 2.488545 ACGCAGTCAGACTTACCTAGTG 59.511 50.000 0.00 0.00 29.74 2.74
4375 5053 7.560368 ACTTTCTTATAGATGTCCTTGGACTG 58.440 38.462 19.11 2.31 0.00 3.51
4435 5113 4.819630 CCATATTGTAATAAGGCACGTGGT 59.180 41.667 18.88 0.00 0.00 4.16
4442 5120 6.404708 TGTAATAAGGCACGTGGTTAATGTA 58.595 36.000 18.88 0.00 0.00 2.29
4450 5128 6.655848 AGGCACGTGGTTAATGTATTTTCTTA 59.344 34.615 18.88 0.00 0.00 2.10
4475 5153 5.997746 TGGCAACTACTTGATTGATATAGGC 59.002 40.000 0.00 0.00 37.61 3.93
4551 5229 8.125978 TCTAGATGTTGCAATCAAAATTCCTT 57.874 30.769 0.59 0.00 30.46 3.36
4597 5275 9.522804 TTTGTTAATATTGTTTTGGACTGTGAC 57.477 29.630 0.00 0.00 0.00 3.67
4617 5295 4.393371 TGACTTAGATCACTGAGACGTGAG 59.607 45.833 0.00 0.00 46.07 3.51
4621 5299 0.805614 ATCACTGAGACGTGAGACCG 59.194 55.000 0.00 0.00 46.07 4.79
4661 5340 4.648762 TGATGTGTTGTTTGGATGTTCCTT 59.351 37.500 0.00 0.00 37.46 3.36
4709 5388 4.968719 TCTCCAGTCTTCCATTGCCTTATA 59.031 41.667 0.00 0.00 0.00 0.98
4721 5400 6.261381 TCCATTGCCTTATAACCGTACATTTC 59.739 38.462 0.00 0.00 0.00 2.17
4728 5407 8.185505 GCCTTATAACCGTACATTTCAAATGAA 58.814 33.333 17.30 0.00 0.00 2.57
4732 5411 6.582677 AACCGTACATTTCAAATGAATCCA 57.417 33.333 17.30 0.00 33.54 3.41
4733 5412 6.773976 ACCGTACATTTCAAATGAATCCAT 57.226 33.333 17.30 0.00 33.54 3.41
4734 5413 6.563422 ACCGTACATTTCAAATGAATCCATG 58.437 36.000 17.30 1.38 33.54 3.66
4735 5414 5.459762 CCGTACATTTCAAATGAATCCATGC 59.540 40.000 17.30 0.00 33.54 4.06
4861 5540 0.323629 TGTTGAATCACCCCCTCGTC 59.676 55.000 0.00 0.00 0.00 4.20
4873 5552 2.292267 CCCCTCGTCCTCATGAAAATG 58.708 52.381 0.00 0.00 0.00 2.32
4888 5567 2.198304 AAATGCCTCACCCCCTCGTC 62.198 60.000 0.00 0.00 0.00 4.20
4931 5610 1.861542 CGTGCTCGGGAAAATGGCAA 61.862 55.000 0.00 0.00 34.65 4.52
4932 5611 0.532115 GTGCTCGGGAAAATGGCAAT 59.468 50.000 0.00 0.00 34.65 3.56
4996 5675 4.188247 TCGTCTGGATTCAGGTTTGTAG 57.812 45.455 0.00 0.00 41.23 2.74
5001 5680 6.100668 GTCTGGATTCAGGTTTGTAGTAGTC 58.899 44.000 0.00 0.00 41.23 2.59
5003 5682 6.037786 TGGATTCAGGTTTGTAGTAGTCTG 57.962 41.667 0.00 0.00 0.00 3.51
5012 5691 9.754382 CAGGTTTGTAGTAGTCTGTTACTTTAA 57.246 33.333 0.00 0.00 39.80 1.52
5054 5733 6.804677 TGTATGTGCTGTTTTGAGTTGATTT 58.195 32.000 0.00 0.00 0.00 2.17
5080 5759 4.036262 GTGAAGTGCCACACATTTGAACTA 59.964 41.667 0.00 0.00 36.74 2.24
5081 5760 4.826733 TGAAGTGCCACACATTTGAACTAT 59.173 37.500 0.00 0.00 36.74 2.12
5176 5856 8.515695 ACTATGATGTGAAATGTCATGTTGAT 57.484 30.769 0.00 0.00 35.80 2.57
5181 5861 6.146601 TGTGAAATGTCATGTTGATGTTGT 57.853 33.333 0.00 0.00 35.80 3.32
5185 5865 8.479280 GTGAAATGTCATGTTGATGTTGTTAAC 58.521 33.333 0.00 0.00 35.80 2.01
5193 5873 6.951062 TGTTGATGTTGTTAACTCATTCCA 57.049 33.333 7.22 4.86 0.00 3.53
5198 5878 8.175925 TGATGTTGTTAACTCATTCCATGAAA 57.824 30.769 7.22 0.00 39.11 2.69
5199 5879 8.805175 TGATGTTGTTAACTCATTCCATGAAAT 58.195 29.630 7.22 0.00 39.11 2.17
5258 5938 6.716284 TCAGTGATAATGTGTATTGGGTGAA 58.284 36.000 0.00 0.00 0.00 3.18
5265 5945 9.783256 GATAATGTGTATTGGGTGAAAACTTAC 57.217 33.333 0.00 0.00 0.00 2.34
5272 5952 7.928706 TGTATTGGGTGAAAACTTACAATTTGG 59.071 33.333 0.78 0.00 31.71 3.28
5289 5969 2.254546 TGGGTTTGCATATCCGCTAG 57.745 50.000 1.76 0.00 0.00 3.42
5290 5970 1.202758 TGGGTTTGCATATCCGCTAGG 60.203 52.381 1.76 0.00 39.46 3.02
5312 5992 2.261729 GAAATTAAAAGGCCACCCCCA 58.738 47.619 5.01 0.00 0.00 4.96
5313 5993 2.659264 AATTAAAAGGCCACCCCCAT 57.341 45.000 5.01 0.00 0.00 4.00
5314 5994 2.174685 ATTAAAAGGCCACCCCCATC 57.825 50.000 5.01 0.00 0.00 3.51
5316 5996 1.149782 TAAAAGGCCACCCCCATCCA 61.150 55.000 5.01 0.00 0.00 3.41
5321 6001 4.060667 CCACCCCCATCCACCCAC 62.061 72.222 0.00 0.00 0.00 4.61
5322 6002 4.060667 CACCCCCATCCACCCACC 62.061 72.222 0.00 0.00 0.00 4.61
5325 6005 4.060667 CCCCATCCACCCACCCAC 62.061 72.222 0.00 0.00 0.00 4.61
5326 6006 3.264052 CCCATCCACCCACCCACA 61.264 66.667 0.00 0.00 0.00 4.17
5327 6007 2.035626 CCATCCACCCACCCACAC 59.964 66.667 0.00 0.00 0.00 3.82
5330 6010 2.840753 ATCCACCCACCCACACACC 61.841 63.158 0.00 0.00 0.00 4.16
5372 6053 6.663944 AATGCAGTCGAGTAGTTTTTATCC 57.336 37.500 0.00 0.00 0.00 2.59
5425 6107 9.857656 ATACAATCATTTGATCCTTCATACACT 57.142 29.630 0.00 0.00 36.64 3.55
5427 6109 6.630444 ATCATTTGATCCTTCATACACTGC 57.370 37.500 0.00 0.00 0.00 4.40
5443 6125 5.343307 ACACTGCTTCAAAATGTCCTTTT 57.657 34.783 0.00 0.00 37.54 2.27
5482 6166 5.774690 TGTGGTTTGAAATTTAGAGCTCCAT 59.225 36.000 10.93 0.00 0.00 3.41
5487 6171 8.854117 GGTTTGAAATTTAGAGCTCCATCATAT 58.146 33.333 10.93 0.00 0.00 1.78
5525 6209 1.798813 CGTCAGACTTAGTTTGCCACC 59.201 52.381 0.00 0.00 0.00 4.61
5566 6250 5.863397 CCATTTCATGTAATTGTTGAAGCGT 59.137 36.000 0.00 0.00 31.54 5.07
5572 6256 8.039603 TCATGTAATTGTTGAAGCGTAGAAAT 57.960 30.769 0.00 0.00 0.00 2.17
5606 6291 7.396339 AGGGTGCGATACTGTGATTATATCTTA 59.604 37.037 0.00 0.00 0.00 2.10
5620 6305 9.276590 TGATTATATCTTAACATGAAGTGCCTG 57.723 33.333 0.00 0.00 0.00 4.85
5623 6308 2.375174 TCTTAACATGAAGTGCCTGGGT 59.625 45.455 0.00 0.00 0.00 4.51
5624 6309 2.198827 TAACATGAAGTGCCTGGGTG 57.801 50.000 0.00 0.00 0.00 4.61
5625 6310 0.185901 AACATGAAGTGCCTGGGTGT 59.814 50.000 0.00 0.00 0.00 4.16
5626 6311 0.538057 ACATGAAGTGCCTGGGTGTG 60.538 55.000 0.00 0.00 0.00 3.82
5627 6312 0.538057 CATGAAGTGCCTGGGTGTGT 60.538 55.000 0.00 0.00 0.00 3.72
5628 6313 0.538057 ATGAAGTGCCTGGGTGTGTG 60.538 55.000 0.00 0.00 0.00 3.82
5629 6314 1.148273 GAAGTGCCTGGGTGTGTGA 59.852 57.895 0.00 0.00 0.00 3.58
5631 6316 0.466189 AAGTGCCTGGGTGTGTGAAG 60.466 55.000 0.00 0.00 0.00 3.02
5654 6340 4.077108 TCTGCTGATGCTGTCAAAAGAAT 58.923 39.130 0.00 0.00 40.48 2.40
5661 6347 7.627939 GCTGATGCTGTCAAAAGAATAGAACAT 60.628 37.037 0.00 0.00 36.14 2.71
5725 6422 7.724305 TTTGTTACTAGGAGAATGTTGTGTC 57.276 36.000 0.00 0.00 0.00 3.67
5737 6434 1.217882 GTTGTGTCGGTCCAGAACAG 58.782 55.000 6.03 0.00 38.21 3.16
5960 6665 4.993905 AGCTCTTTGTTGTTTTGTGTACC 58.006 39.130 0.00 0.00 0.00 3.34
6103 6809 5.284660 GTCTGCAAGCAATTTGTAAGAATCG 59.715 40.000 0.00 0.00 39.08 3.34
6146 6852 5.807520 TCTGTTTGCATAAGACGATTCTCTC 59.192 40.000 0.00 0.00 0.00 3.20
6230 6936 9.672673 TTTCCTTCCAAAAATAATGTGTTTTGA 57.327 25.926 9.77 0.00 44.05 2.69
6231 6937 9.672673 TTCCTTCCAAAAATAATGTGTTTTGAA 57.327 25.926 9.77 3.36 44.05 2.69
6232 6938 9.103861 TCCTTCCAAAAATAATGTGTTTTGAAC 57.896 29.630 9.77 0.00 44.05 3.18
6233 6939 8.061268 CCTTCCAAAAATAATGTGTTTTGAACG 58.939 33.333 9.77 0.00 44.05 3.95
6236 6942 8.812329 TCCAAAAATAATGTGTTTTGAACGAAG 58.188 29.630 9.77 0.00 44.05 3.79
6237 6943 8.599774 CCAAAAATAATGTGTTTTGAACGAAGT 58.400 29.630 9.77 0.00 44.05 3.01
6239 6945 8.918961 AAAATAATGTGTTTTGAACGAAGTGA 57.081 26.923 0.00 0.00 45.00 3.41
6240 6946 9.528018 AAAATAATGTGTTTTGAACGAAGTGAT 57.472 25.926 0.00 0.00 45.00 3.06
6305 7031 3.433615 GGAAGCATGTAGACAGTGACAAC 59.566 47.826 0.00 0.00 0.00 3.32
6868 7607 4.578516 TGTCTGTTGAACCAAACTACCATG 59.421 41.667 0.00 0.00 0.00 3.66
6877 7616 7.004086 TGAACCAAACTACCATGAATTCTTCT 58.996 34.615 7.05 0.00 0.00 2.85
6879 7618 5.183904 ACCAAACTACCATGAATTCTTCTGC 59.816 40.000 7.05 0.00 0.00 4.26
6882 7621 7.373493 CAAACTACCATGAATTCTTCTGCTTT 58.627 34.615 7.05 0.00 0.00 3.51
6884 7623 6.240894 ACTACCATGAATTCTTCTGCTTTCA 58.759 36.000 7.05 0.00 33.06 2.69
6887 7626 5.537674 ACCATGAATTCTTCTGCTTTCACTT 59.462 36.000 7.05 0.00 31.45 3.16
6902 7641 8.547967 TGCTTTCACTTTCCTATTAGTTGTAG 57.452 34.615 0.00 0.00 0.00 2.74
7099 7838 3.319137 TTGAGGAGACCAAGAATGACG 57.681 47.619 0.00 0.00 0.00 4.35
7244 7985 8.142994 TGTCAGAATTGTCTCTGTAAAGAAAC 57.857 34.615 0.86 0.00 42.93 2.78
7274 8015 5.586243 TGTTATAATCAGCAGCTTCCAGTTC 59.414 40.000 0.00 0.00 0.00 3.01
7384 8167 5.184892 ACTTACTGAAGGGAGCAAATGAT 57.815 39.130 0.00 0.00 36.95 2.45
7479 8262 5.695816 TGCATCTTTTATTGTTTGAACCTGC 59.304 36.000 0.00 0.00 0.00 4.85
7765 8681 5.796502 AATCAAAATGGGGGAAGAGAGTA 57.203 39.130 0.00 0.00 0.00 2.59
7951 8962 2.054799 TGGTTCAACTACCAGAAGCCT 58.945 47.619 0.00 0.00 43.14 4.58
7987 9042 3.160269 AGAAGTCAGGGCCAAAATCTTG 58.840 45.455 6.18 0.00 0.00 3.02
8036 9091 6.817765 TTAGAACCAAGAATTAGCAACTGG 57.182 37.500 0.00 0.00 0.00 4.00
8208 9265 4.446719 CCAAGAAAAGTTTGCATCAGCTTC 59.553 41.667 0.00 0.00 42.74 3.86
8411 9557 3.018423 TCGACATCCTCATCCTCTTCA 57.982 47.619 0.00 0.00 0.00 3.02
8438 9584 2.348888 ATCGTCGAAGAAGGGCGGT 61.349 57.895 4.85 0.00 39.69 5.68
8628 9774 3.011032 AGAATGCCAGAGATCCACCTTTT 59.989 43.478 0.00 0.00 0.00 2.27
8631 9777 2.087646 GCCAGAGATCCACCTTTTCAC 58.912 52.381 0.00 0.00 0.00 3.18
8677 9825 4.720649 TCGAGAGTCCATTTACAGGAAG 57.279 45.455 0.00 0.00 36.80 3.46
8681 9829 5.578727 CGAGAGTCCATTTACAGGAAGAAAG 59.421 44.000 0.00 0.00 36.80 2.62
8684 9832 7.518188 AGAGTCCATTTACAGGAAGAAAGAAA 58.482 34.615 0.00 0.00 36.80 2.52
8726 9874 5.881637 AATGCACAAATTGTACAAACGTC 57.118 34.783 13.23 5.48 25.97 4.34
8861 10013 6.375455 GGAAACAGTGGTATTTCTCATGTGAT 59.625 38.462 0.00 0.00 35.55 3.06
8911 10063 7.230712 CACTCCATATATATATGTCGTGGCCTA 59.769 40.741 25.73 6.47 38.73 3.93
8913 10065 6.208797 TCCATATATATATGTCGTGGCCTAGC 59.791 42.308 24.58 0.00 38.73 3.42
8945 10097 1.318491 GCGCGTCATCTTTTCATTTGC 59.682 47.619 8.43 0.00 0.00 3.68
8968 10120 9.758651 TTGCGATTACAAGAATATACATGTACT 57.241 29.630 7.96 0.00 0.00 2.73
8969 10121 9.406828 TGCGATTACAAGAATATACATGTACTC 57.593 33.333 7.96 5.59 0.00 2.59
8970 10122 8.861101 GCGATTACAAGAATATACATGTACTCC 58.139 37.037 7.96 0.00 29.26 3.85
8971 10123 9.355215 CGATTACAAGAATATACATGTACTCCC 57.645 37.037 7.96 0.00 29.26 4.30
8974 10126 9.656323 TTACAAGAATATACATGTACTCCCTCT 57.344 33.333 7.96 3.64 0.00 3.69
8975 10127 7.957002 ACAAGAATATACATGTACTCCCTCTG 58.043 38.462 7.96 3.71 0.00 3.35
8976 10128 7.565398 ACAAGAATATACATGTACTCCCTCTGT 59.435 37.037 7.96 4.31 0.00 3.41
8977 10129 9.078990 CAAGAATATACATGTACTCCCTCTGTA 57.921 37.037 7.96 0.00 0.00 2.74
8978 10130 9.656323 AAGAATATACATGTACTCCCTCTGTAA 57.344 33.333 7.96 0.00 0.00 2.41
8979 10131 9.656323 AGAATATACATGTACTCCCTCTGTAAA 57.344 33.333 7.96 0.00 0.00 2.01
8980 10132 9.915629 GAATATACATGTACTCCCTCTGTAAAG 57.084 37.037 7.96 0.00 0.00 1.85
8981 10133 9.656323 AATATACATGTACTCCCTCTGTAAAGA 57.344 33.333 7.96 0.00 0.00 2.52
8982 10134 7.973048 ATACATGTACTCCCTCTGTAAAGAA 57.027 36.000 7.96 0.00 0.00 2.52
8983 10135 6.681729 ACATGTACTCCCTCTGTAAAGAAA 57.318 37.500 0.00 0.00 0.00 2.52
8984 10136 7.259088 ACATGTACTCCCTCTGTAAAGAAAT 57.741 36.000 0.00 0.00 0.00 2.17
8985 10137 8.375493 ACATGTACTCCCTCTGTAAAGAAATA 57.625 34.615 0.00 0.00 0.00 1.40
8992 10144 9.495382 ACTCCCTCTGTAAAGAAATATAAGAGT 57.505 33.333 0.00 0.00 0.00 3.24
8993 10145 9.757227 CTCCCTCTGTAAAGAAATATAAGAGTG 57.243 37.037 0.00 0.00 0.00 3.51
8995 10147 9.892130 CCCTCTGTAAAGAAATATAAGAGTGTT 57.108 33.333 0.00 0.00 0.00 3.32
9023 10175 9.134055 AGATTACTACTTTAGTGATGTACTCCC 57.866 37.037 0.00 0.00 40.89 4.30
9024 10176 9.134055 GATTACTACTTTAGTGATGTACTCCCT 57.866 37.037 0.00 0.00 40.89 4.20
9025 10177 8.517062 TTACTACTTTAGTGATGTACTCCCTC 57.483 38.462 0.00 0.00 40.89 4.30
9026 10178 6.733509 ACTACTTTAGTGATGTACTCCCTCT 58.266 40.000 0.00 0.00 40.89 3.69
9027 10179 5.923733 ACTTTAGTGATGTACTCCCTCTG 57.076 43.478 0.00 0.00 40.89 3.35
9028 10180 5.334421 ACTTTAGTGATGTACTCCCTCTGT 58.666 41.667 0.00 0.00 40.89 3.41
9029 10181 6.491383 ACTTTAGTGATGTACTCCCTCTGTA 58.509 40.000 0.00 0.00 40.89 2.74
9030 10182 6.952358 ACTTTAGTGATGTACTCCCTCTGTAA 59.048 38.462 0.00 0.00 40.89 2.41
9031 10183 7.453752 ACTTTAGTGATGTACTCCCTCTGTAAA 59.546 37.037 0.00 0.00 40.89 2.01
9032 10184 5.923733 AGTGATGTACTCCCTCTGTAAAG 57.076 43.478 0.00 0.00 33.17 1.85
9033 10185 5.580998 AGTGATGTACTCCCTCTGTAAAGA 58.419 41.667 0.00 0.00 33.17 2.52
9034 10186 6.017192 AGTGATGTACTCCCTCTGTAAAGAA 58.983 40.000 0.00 0.00 33.17 2.52
9035 10187 6.497259 AGTGATGTACTCCCTCTGTAAAGAAA 59.503 38.462 0.00 0.00 33.17 2.52
9036 10188 7.181125 AGTGATGTACTCCCTCTGTAAAGAAAT 59.819 37.037 0.00 0.00 33.17 2.17
9037 10189 8.475639 GTGATGTACTCCCTCTGTAAAGAAATA 58.524 37.037 0.00 0.00 0.00 1.40
9038 10190 9.213777 TGATGTACTCCCTCTGTAAAGAAATAT 57.786 33.333 0.00 0.00 0.00 1.28
9044 10196 9.495382 ACTCCCTCTGTAAAGAAATATAAGAGT 57.505 33.333 0.00 0.00 0.00 3.24
9045 10197 9.757227 CTCCCTCTGTAAAGAAATATAAGAGTG 57.243 37.037 0.00 0.00 0.00 3.51
9046 10198 9.268282 TCCCTCTGTAAAGAAATATAAGAGTGT 57.732 33.333 0.00 0.00 0.00 3.55
9047 10199 9.892130 CCCTCTGTAAAGAAATATAAGAGTGTT 57.108 33.333 0.00 0.00 0.00 3.32
9076 10228 9.458374 GATTACTACTTTAGTGATCTGAAGCTC 57.542 37.037 9.68 0.00 44.10 4.09
9077 10229 8.582657 TTACTACTTTAGTGATCTGAAGCTCT 57.417 34.615 0.00 0.00 39.78 4.09
9078 10230 7.475137 ACTACTTTAGTGATCTGAAGCTCTT 57.525 36.000 0.00 0.00 39.78 2.85
9079 10231 8.582657 ACTACTTTAGTGATCTGAAGCTCTTA 57.417 34.615 0.00 0.00 39.78 2.10
9080 10232 9.196139 ACTACTTTAGTGATCTGAAGCTCTTAT 57.804 33.333 0.00 0.00 39.78 1.73
9083 10235 9.979578 ACTTTAGTGATCTGAAGCTCTTATATG 57.020 33.333 0.00 0.00 39.78 1.78
9084 10236 9.979578 CTTTAGTGATCTGAAGCTCTTATATGT 57.020 33.333 0.00 0.00 32.18 2.29
9085 10237 9.973450 TTTAGTGATCTGAAGCTCTTATATGTC 57.027 33.333 0.00 0.00 0.00 3.06
9086 10238 7.838079 AGTGATCTGAAGCTCTTATATGTCT 57.162 36.000 0.00 0.00 0.00 3.41
9087 10239 8.248904 AGTGATCTGAAGCTCTTATATGTCTT 57.751 34.615 0.00 0.00 0.00 3.01
9088 10240 8.703743 AGTGATCTGAAGCTCTTATATGTCTTT 58.296 33.333 0.00 0.00 0.00 2.52
9089 10241 9.973450 GTGATCTGAAGCTCTTATATGTCTTTA 57.027 33.333 0.00 0.00 0.00 1.85
9092 10244 9.941325 ATCTGAAGCTCTTATATGTCTTTATGG 57.059 33.333 0.00 0.00 0.00 2.74
9093 10245 9.147732 TCTGAAGCTCTTATATGTCTTTATGGA 57.852 33.333 0.00 0.00 0.00 3.41
9094 10246 9.421806 CTGAAGCTCTTATATGTCTTTATGGAG 57.578 37.037 0.00 0.00 0.00 3.86
9095 10247 8.370940 TGAAGCTCTTATATGTCTTTATGGAGG 58.629 37.037 0.00 0.00 0.00 4.30
9096 10248 7.251321 AGCTCTTATATGTCTTTATGGAGGG 57.749 40.000 0.00 0.00 0.00 4.30
9097 10249 7.019388 AGCTCTTATATGTCTTTATGGAGGGA 58.981 38.462 0.00 0.00 0.00 4.20
9114 10266 7.361457 TGGAGGGAGTATCTTGTAATGTTAG 57.639 40.000 0.00 0.00 33.73 2.34
9168 10320 5.190330 GGGTAACTATTTGTCCCCTCTACAA 59.810 44.000 0.00 0.00 37.01 2.41
9175 10327 1.361543 TGTCCCCTCTACAAGCCTACT 59.638 52.381 0.00 0.00 0.00 2.57
9184 10336 6.295011 CCCTCTACAAGCCTACTCAATAGATG 60.295 46.154 0.00 0.00 31.83 2.90
9187 10339 7.946207 TCTACAAGCCTACTCAATAGATGAAG 58.054 38.462 0.00 0.00 37.67 3.02
9188 10340 6.552445 ACAAGCCTACTCAATAGATGAAGT 57.448 37.500 0.00 0.00 37.67 3.01
9190 10342 5.543507 AGCCTACTCAATAGATGAAGTGG 57.456 43.478 0.00 0.00 37.67 4.00
9191 10343 5.211973 AGCCTACTCAATAGATGAAGTGGA 58.788 41.667 0.00 0.00 37.67 4.02
9232 10386 5.185454 TGGCAATGTCCTATTCTGTAACTG 58.815 41.667 0.00 0.00 0.00 3.16
9237 10391 7.880195 GCAATGTCCTATTCTGTAACTGGATAT 59.120 37.037 0.00 0.00 0.00 1.63
9332 10493 1.078708 AACCGGAATTCGTCGCCAT 60.079 52.632 9.46 0.00 37.11 4.40
9346 10507 3.864686 CCATGGCTCGCCGTTTCG 61.865 66.667 0.00 0.00 39.42 3.46
9365 10526 0.038159 GTTCAGGGATATCCGCCTCG 60.038 60.000 15.69 2.33 41.52 4.63
9401 10562 4.727655 GTCGTCATCGCAAACTACTAGTAC 59.272 45.833 0.00 0.00 36.96 2.73
9402 10563 3.717890 CGTCATCGCAAACTACTAGTACG 59.282 47.826 0.00 0.95 0.00 3.67
9404 10565 5.500771 CGTCATCGCAAACTACTAGTACGTA 60.501 44.000 0.00 0.00 0.00 3.57
9405 10566 5.900789 GTCATCGCAAACTACTAGTACGTAG 59.099 44.000 0.00 6.43 41.98 3.51
9415 10576 7.912056 ACTACTAGTACGTAGTTGATTGACA 57.088 36.000 17.05 0.00 45.76 3.58
9416 10577 8.327941 ACTACTAGTACGTAGTTGATTGACAA 57.672 34.615 17.05 0.00 45.76 3.18
9417 10578 8.954350 ACTACTAGTACGTAGTTGATTGACAAT 58.046 33.333 17.05 0.00 45.76 2.71
9418 10579 9.435802 CTACTAGTACGTAGTTGATTGACAATC 57.564 37.037 19.39 19.39 37.78 2.67
9419 10580 6.965500 ACTAGTACGTAGTTGATTGACAATCG 59.035 38.462 20.47 12.08 37.78 3.34
9479 10642 3.855689 AAATTGCAAGAATGGACCTCG 57.144 42.857 4.94 0.00 0.00 4.63
9480 10643 2.787473 ATTGCAAGAATGGACCTCGA 57.213 45.000 4.94 0.00 0.00 4.04
9553 10719 1.833630 TCCATTGCTGAGACTCGGATT 59.166 47.619 15.80 0.00 0.00 3.01
9556 10722 1.442769 TTGCTGAGACTCGGATTTGC 58.557 50.000 15.80 4.76 0.00 3.68
9634 10804 6.748658 GGTTTATTTATTTAACAGGCACGACC 59.251 38.462 0.00 0.00 39.61 4.79
9635 10805 7.306953 GTTTATTTATTTAACAGGCACGACCA 58.693 34.615 0.00 0.00 43.14 4.02
9639 10809 2.851263 TTAACAGGCACGACCAGAAT 57.149 45.000 0.00 0.00 43.14 2.40
9674 10844 2.335316 AAGTTTACAAGCCCACACGA 57.665 45.000 0.00 0.00 0.00 4.35
9696 10866 9.083080 CACGAATAGAATACACACAATAGTTGA 57.917 33.333 0.00 0.00 0.00 3.18
9697 10867 9.647797 ACGAATAGAATACACACAATAGTTGAA 57.352 29.630 0.00 0.00 0.00 2.69
9755 10925 0.108329 CACGGCCGGAATAGACAGTT 60.108 55.000 31.76 0.00 0.00 3.16
9782 10954 6.292542 CGATCATAGTTTACAAGCTCACATGG 60.293 42.308 0.00 0.00 0.00 3.66
9833 11005 1.389106 ACGCGTAAAAAGTGATCGAGC 59.611 47.619 11.67 0.00 0.00 5.03
9842 11014 5.695851 AAAAGTGATCGAGCAATTCAGTT 57.304 34.783 17.25 8.41 35.17 3.16
9860 11032 2.074230 TTTTGCGGCACAAGCAGGAG 62.074 55.000 0.05 0.00 46.01 3.69
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
65 66 1.036707 CTCCTCCTCGAATCCTCCAC 58.963 60.000 0.00 0.00 0.00 4.02
76 77 1.219213 TCCAATCTCCTCCTCCTCCTC 59.781 57.143 0.00 0.00 0.00 3.71
77 78 1.220236 CTCCAATCTCCTCCTCCTCCT 59.780 57.143 0.00 0.00 0.00 3.69
78 79 1.062505 ACTCCAATCTCCTCCTCCTCC 60.063 57.143 0.00 0.00 0.00 4.30
79 80 2.316108 GACTCCAATCTCCTCCTCCTC 58.684 57.143 0.00 0.00 0.00 3.71
80 81 1.410932 CGACTCCAATCTCCTCCTCCT 60.411 57.143 0.00 0.00 0.00 3.69
81 82 1.036707 CGACTCCAATCTCCTCCTCC 58.963 60.000 0.00 0.00 0.00 4.30
96 97 1.208844 TCCCTCTCTCTCACCCGACT 61.209 60.000 0.00 0.00 0.00 4.18
104 105 2.092429 TGCTTCTCTCTCCCTCTCTCTC 60.092 54.545 0.00 0.00 0.00 3.20
106 107 2.092429 TCTGCTTCTCTCTCCCTCTCTC 60.092 54.545 0.00 0.00 0.00 3.20
107 108 1.922447 TCTGCTTCTCTCTCCCTCTCT 59.078 52.381 0.00 0.00 0.00 3.10
108 109 2.435372 TCTGCTTCTCTCTCCCTCTC 57.565 55.000 0.00 0.00 0.00 3.20
109 110 2.669781 CATCTGCTTCTCTCTCCCTCT 58.330 52.381 0.00 0.00 0.00 3.69
111 112 1.122227 GCATCTGCTTCTCTCTCCCT 58.878 55.000 0.00 0.00 38.21 4.20
112 113 0.249405 CGCATCTGCTTCTCTCTCCC 60.249 60.000 0.09 0.00 39.32 4.30
115 116 0.175302 CACCGCATCTGCTTCTCTCT 59.825 55.000 0.09 0.00 39.32 3.10
116 117 0.809241 CCACCGCATCTGCTTCTCTC 60.809 60.000 0.09 0.00 39.32 3.20
202 203 3.593794 CGTCGATCCCCGGACCTC 61.594 72.222 0.73 0.00 39.14 3.85
210 211 3.917760 CCCTCAGCCGTCGATCCC 61.918 72.222 0.00 0.00 0.00 3.85
221 222 0.958876 GCCGGTAAAACCACCCTCAG 60.959 60.000 1.90 0.00 38.47 3.35
222 223 1.073548 GCCGGTAAAACCACCCTCA 59.926 57.895 1.90 0.00 38.47 3.86
228 229 2.934886 AACACTAGCCGGTAAAACCA 57.065 45.000 1.90 0.00 38.47 3.67
230 231 3.624410 CCCATAACACTAGCCGGTAAAAC 59.376 47.826 1.90 0.00 0.00 2.43
233 234 2.696707 CTCCCATAACACTAGCCGGTAA 59.303 50.000 1.90 0.00 0.00 2.85
234 235 2.313317 CTCCCATAACACTAGCCGGTA 58.687 52.381 1.90 0.00 0.00 4.02
235 236 1.120530 CTCCCATAACACTAGCCGGT 58.879 55.000 1.90 0.00 0.00 5.28
237 238 0.393077 CCCTCCCATAACACTAGCCG 59.607 60.000 0.00 0.00 0.00 5.52
286 308 2.157834 ATCAACAAGTGTAACCGCGA 57.842 45.000 8.23 0.00 37.80 5.87
287 309 2.961522 AATCAACAAGTGTAACCGCG 57.038 45.000 0.00 0.00 37.80 6.46
333 367 2.772077 TAGCGTAACTGCAATCCCAA 57.228 45.000 0.00 0.00 37.31 4.12
335 369 5.507974 GTTAATTAGCGTAACTGCAATCCC 58.492 41.667 0.00 0.00 37.31 3.85
349 383 1.991611 CGTGCGCGCGTTAATTAGC 60.992 57.895 33.47 12.41 0.00 3.09
364 398 2.098298 CGAGGGCGAAAATGCGTG 59.902 61.111 0.00 0.00 40.82 5.34
367 411 2.750237 ACCCGAGGGCGAAAATGC 60.750 61.111 8.33 0.00 40.82 3.56
369 413 0.107848 CTACACCCGAGGGCGAAAAT 60.108 55.000 8.33 0.00 40.82 1.82
395 439 2.279252 TCTTCTATTCGCCGCCGC 60.279 61.111 0.00 0.00 0.00 6.53
396 440 1.661821 CCTCTTCTATTCGCCGCCG 60.662 63.158 0.00 0.00 0.00 6.46
397 441 1.301009 CCCTCTTCTATTCGCCGCC 60.301 63.158 0.00 0.00 0.00 6.13
398 442 0.104304 TTCCCTCTTCTATTCGCCGC 59.896 55.000 0.00 0.00 0.00 6.53
399 443 1.538419 GGTTCCCTCTTCTATTCGCCG 60.538 57.143 0.00 0.00 0.00 6.46
400 444 1.538419 CGGTTCCCTCTTCTATTCGCC 60.538 57.143 0.00 0.00 0.00 5.54
401 445 1.538419 CCGGTTCCCTCTTCTATTCGC 60.538 57.143 0.00 0.00 0.00 4.70
402 446 1.068741 CCCGGTTCCCTCTTCTATTCG 59.931 57.143 0.00 0.00 0.00 3.34
403 447 2.395619 TCCCGGTTCCCTCTTCTATTC 58.604 52.381 0.00 0.00 0.00 1.75
405 449 2.330216 CATCCCGGTTCCCTCTTCTAT 58.670 52.381 0.00 0.00 0.00 1.98
407 451 0.983378 CCATCCCGGTTCCCTCTTCT 60.983 60.000 0.00 0.00 0.00 2.85
408 452 0.981277 TCCATCCCGGTTCCCTCTTC 60.981 60.000 0.00 0.00 35.57 2.87
409 453 0.983378 CTCCATCCCGGTTCCCTCTT 60.983 60.000 0.00 0.00 35.57 2.85
410 454 1.383248 CTCCATCCCGGTTCCCTCT 60.383 63.158 0.00 0.00 35.57 3.69
411 455 2.444256 CCTCCATCCCGGTTCCCTC 61.444 68.421 0.00 0.00 35.57 4.30
412 456 2.366972 CCTCCATCCCGGTTCCCT 60.367 66.667 0.00 0.00 35.57 4.20
415 459 1.221021 GTCACCTCCATCCCGGTTC 59.779 63.158 0.00 0.00 35.57 3.62
416 460 2.656069 CGTCACCTCCATCCCGGTT 61.656 63.158 0.00 0.00 35.57 4.44
417 461 3.075005 CGTCACCTCCATCCCGGT 61.075 66.667 0.00 0.00 35.57 5.28
522 628 6.885952 TGGCAGTTTTAGTTTGTAAGCATA 57.114 33.333 0.00 0.00 0.00 3.14
529 635 4.892934 TCAAGGATGGCAGTTTTAGTTTGT 59.107 37.500 0.00 0.00 0.00 2.83
567 694 3.053291 GGGTGGCGATTGCGAACA 61.053 61.111 7.35 0.00 44.10 3.18
601 728 2.448477 AACGGTAATGTCGTTCGGC 58.552 52.632 0.00 0.00 46.12 5.54
609 736 1.586154 GCAGCAGGCAACGGTAATGT 61.586 55.000 0.00 0.00 43.97 2.71
650 789 1.516365 CTCTCCCTGTGACGTCGTGT 61.516 60.000 11.62 0.00 0.00 4.49
662 801 0.837272 CCGTCTCTCTCTCTCTCCCT 59.163 60.000 0.00 0.00 0.00 4.20
663 802 0.818040 GCCGTCTCTCTCTCTCTCCC 60.818 65.000 0.00 0.00 0.00 4.30
664 803 1.157870 CGCCGTCTCTCTCTCTCTCC 61.158 65.000 0.00 0.00 0.00 3.71
666 805 0.035820 AACGCCGTCTCTCTCTCTCT 60.036 55.000 0.00 0.00 0.00 3.10
667 806 0.098025 CAACGCCGTCTCTCTCTCTC 59.902 60.000 0.00 0.00 0.00 3.20
668 807 0.606944 ACAACGCCGTCTCTCTCTCT 60.607 55.000 0.00 0.00 0.00 3.10
675 820 2.087009 CCGAGAACAACGCCGTCTC 61.087 63.158 0.00 0.00 0.00 3.36
696 841 2.182284 CGGGCCATCGTTGTCGTA 59.818 61.111 4.39 0.00 38.33 3.43
783 931 4.065281 ACTTCCCTTCGACGGCGG 62.065 66.667 12.58 0.00 38.28 6.13
786 934 2.264794 CCCACTTCCCTTCGACGG 59.735 66.667 0.00 0.00 0.00 4.79
789 938 3.327404 GCCCCCACTTCCCTTCGA 61.327 66.667 0.00 0.00 0.00 3.71
790 939 4.426313 GGCCCCCACTTCCCTTCG 62.426 72.222 0.00 0.00 0.00 3.79
820 969 4.741239 GCCCCACCCTCTCTCCCA 62.741 72.222 0.00 0.00 0.00 4.37
832 982 3.179339 TTTGACCCCTTCGCCCCA 61.179 61.111 0.00 0.00 0.00 4.96
862 1012 3.948086 CTCGCTCGCGTCCGTTTCT 62.948 63.158 17.45 0.00 40.74 2.52
864 1014 4.034258 TCTCGCTCGCGTCCGTTT 62.034 61.111 17.45 0.00 40.74 3.60
902 1052 0.374758 TCGCCGTGTCGTATGTCTAC 59.625 55.000 0.00 0.00 0.00 2.59
904 1054 1.136147 GTCGCCGTGTCGTATGTCT 59.864 57.895 0.00 0.00 0.00 3.41
905 1055 2.212983 CGTCGCCGTGTCGTATGTC 61.213 63.158 0.00 0.00 0.00 3.06
962 1129 2.682494 CGACGGGAAGGAAGGGGA 60.682 66.667 0.00 0.00 0.00 4.81
1403 1732 1.022735 GAAGGTACCGAGCGAGATCA 58.977 55.000 6.18 0.00 0.00 2.92
1422 1751 1.082104 GCGAGCACAAGGAAAACGG 60.082 57.895 0.00 0.00 0.00 4.44
1433 1762 1.067071 ACAGGTAAACTAGGCGAGCAC 60.067 52.381 0.00 0.00 0.00 4.40
1449 1778 1.065928 GATACAGCGGTCCGACAGG 59.934 63.158 17.49 2.79 39.46 4.00
1463 1792 2.176273 CGCAGGCAGGCACAGATAC 61.176 63.158 0.00 0.00 0.00 2.24
1504 1835 5.848921 AGGGAGAGGCAATAATAGAACAGAT 59.151 40.000 0.00 0.00 0.00 2.90
1511 1842 6.681368 GCAAAAACAGGGAGAGGCAATAATAG 60.681 42.308 0.00 0.00 0.00 1.73
1513 1844 4.081476 GCAAAAACAGGGAGAGGCAATAAT 60.081 41.667 0.00 0.00 0.00 1.28
1514 1845 3.258123 GCAAAAACAGGGAGAGGCAATAA 59.742 43.478 0.00 0.00 0.00 1.40
1515 1846 2.825532 GCAAAAACAGGGAGAGGCAATA 59.174 45.455 0.00 0.00 0.00 1.90
1519 1850 2.087646 CTAGCAAAAACAGGGAGAGGC 58.912 52.381 0.00 0.00 0.00 4.70
1520 1851 2.087646 GCTAGCAAAAACAGGGAGAGG 58.912 52.381 10.63 0.00 0.00 3.69
1521 1852 2.746362 CAGCTAGCAAAAACAGGGAGAG 59.254 50.000 18.83 0.00 0.00 3.20
1526 1857 2.618241 TGACACAGCTAGCAAAAACAGG 59.382 45.455 18.83 0.00 0.00 4.00
1547 1878 1.202639 TCGTTGTCACCAGAGCACAAT 60.203 47.619 0.00 0.00 32.80 2.71
1555 1886 6.539649 TTAAAGATTTCTCGTTGTCACCAG 57.460 37.500 0.00 0.00 0.00 4.00
1559 1890 8.836413 AGACAAATTAAAGATTTCTCGTTGTCA 58.164 29.630 13.36 0.00 42.90 3.58
1580 1911 4.035612 AGCTACTGACCACTAGAGACAA 57.964 45.455 0.00 0.00 0.00 3.18
1583 1914 4.265893 CAGAAGCTACTGACCACTAGAGA 58.734 47.826 0.00 0.00 39.94 3.10
1584 1915 3.181491 GCAGAAGCTACTGACCACTAGAG 60.181 52.174 0.00 0.00 39.94 2.43
1630 1961 2.467880 TGACAGATTACAGGGAGGGTC 58.532 52.381 0.00 0.00 0.00 4.46
1686 2028 4.639078 ATGTTTCCCTTTTTGGATTGGG 57.361 40.909 0.00 0.00 40.95 4.12
1702 2044 5.470098 AGCGCGAATATGGAATCTAATGTTT 59.530 36.000 12.10 0.00 0.00 2.83
1711 2053 0.588252 GTGCAGCGCGAATATGGAAT 59.412 50.000 12.10 0.00 0.00 3.01
1726 2072 5.865085 ACCAAATAACTGAGAACTAGTGCA 58.135 37.500 3.00 0.00 0.00 4.57
1736 2082 4.270325 GCTAACGGCTACCAAATAACTGAG 59.730 45.833 0.00 0.00 38.06 3.35
1739 2085 3.119029 TCGCTAACGGCTACCAAATAACT 60.119 43.478 0.00 0.00 40.63 2.24
1744 2090 2.004017 CAATCGCTAACGGCTACCAAA 58.996 47.619 0.00 0.00 40.63 3.28
1791 2137 3.702045 AGAGTAAGAGACCGCTGCTTAAT 59.298 43.478 0.00 0.00 0.00 1.40
1837 2183 3.562343 TCTACTCTGGCTACTGATCGT 57.438 47.619 0.00 0.00 0.00 3.73
1866 2212 2.636830 GTGTCCCTGGATCATGTGAAG 58.363 52.381 0.00 0.00 0.00 3.02
1878 2224 0.601841 AAAACCGTAGCGTGTCCCTG 60.602 55.000 0.00 0.00 0.00 4.45
1891 2237 0.821711 TTCTGCCCACCTGAAAACCG 60.822 55.000 0.00 0.00 0.00 4.44
1906 2252 5.831702 CCTTCTCTGGGATTTTCATTCTG 57.168 43.478 0.00 0.00 0.00 3.02
1933 2279 3.247173 GCAGTTCTCCATCTAAGCGATTG 59.753 47.826 0.00 0.00 0.00 2.67
1969 2316 3.327757 ACTTTGCCACCAAGAGAGATGTA 59.672 43.478 0.00 0.00 31.52 2.29
1974 2321 1.972872 ACACTTTGCCACCAAGAGAG 58.027 50.000 0.00 0.00 31.52 3.20
1982 2329 5.049167 TGATTCAATTCAACACTTTGCCAC 58.951 37.500 0.00 0.00 32.17 5.01
2001 2363 9.376075 GATGTGCTGCTATTATACTACATGATT 57.624 33.333 0.00 0.00 0.00 2.57
2007 2369 9.360093 CTTAAGGATGTGCTGCTATTATACTAC 57.640 37.037 0.00 0.00 0.00 2.73
2008 2370 9.090103 ACTTAAGGATGTGCTGCTATTATACTA 57.910 33.333 7.53 0.00 0.00 1.82
2009 2371 7.967908 ACTTAAGGATGTGCTGCTATTATACT 58.032 34.615 7.53 0.00 0.00 2.12
2050 2412 9.756571 AGGAAGGTAGGTAGTATGTTATATGAG 57.243 37.037 0.00 0.00 0.00 2.90
2127 2492 6.777213 TCCAACTTATCAGAAGGTACTCTC 57.223 41.667 0.00 0.00 38.49 3.20
2138 2503 3.314635 GCAGAGCCAATCCAACTTATCAG 59.685 47.826 0.00 0.00 0.00 2.90
2160 2525 3.209410 AGCGATTAAGCAAGGATTCCTG 58.791 45.455 5.84 2.03 40.15 3.86
2161 2526 3.567478 AGCGATTAAGCAAGGATTCCT 57.433 42.857 0.00 0.00 40.15 3.36
2164 2529 3.997021 CGGATAGCGATTAAGCAAGGATT 59.003 43.478 0.00 0.00 40.15 3.01
2175 2540 1.542030 CTAGCAGGACGGATAGCGATT 59.458 52.381 0.00 0.00 0.00 3.34
2189 2554 5.468592 CAGGTCACAGAATATAGCTAGCAG 58.531 45.833 18.83 0.00 0.00 4.24
2236 2601 4.404073 ACAACTGTTTAAAATGCCCTCACA 59.596 37.500 0.00 0.00 0.00 3.58
2252 2617 9.062524 TGCTTATCTTGTAAAATGTACAACTGT 57.937 29.630 0.00 0.00 34.21 3.55
2278 2643 6.769512 TCAAAGCTAGTCAACTTAGTGGATT 58.230 36.000 0.00 0.00 0.00 3.01
2279 2644 6.360370 TCAAAGCTAGTCAACTTAGTGGAT 57.640 37.500 0.00 0.00 0.00 3.41
2322 2689 9.119418 CACATTTTGGTACACATAATCTATGGA 57.881 33.333 0.00 0.00 39.29 3.41
2323 2690 8.902806 ACACATTTTGGTACACATAATCTATGG 58.097 33.333 0.00 0.00 39.29 2.74
2327 2694 7.829211 AGCTACACATTTTGGTACACATAATCT 59.171 33.333 0.00 0.00 39.29 2.40
2336 2703 6.753107 AATGGTAGCTACACATTTTGGTAC 57.247 37.500 24.75 4.03 31.21 3.34
2338 2705 6.664428 AAAATGGTAGCTACACATTTTGGT 57.336 33.333 35.05 24.61 46.84 3.67
2361 2728 2.549134 CCGGTCATGTTAGGACACACAA 60.549 50.000 0.00 0.00 38.91 3.33
2377 2744 2.030457 CGTTATCTGCAATCAACCGGTC 59.970 50.000 8.04 0.00 0.00 4.79
2379 2746 1.330521 CCGTTATCTGCAATCAACCGG 59.669 52.381 0.00 0.00 0.00 5.28
2579 2946 0.462375 ACCGTTGAACCCTTTTTGCC 59.538 50.000 0.00 0.00 0.00 4.52
2743 3110 9.627123 ACATGTATTACAGTGGCATATAACTTT 57.373 29.630 0.00 0.00 0.00 2.66
2861 3230 6.990349 GGGAGATTATCTGTAATTTCGGAACA 59.010 38.462 0.00 0.00 34.09 3.18
2961 3330 5.703592 TCGTTGCATCAGTAACAAGGTTTAT 59.296 36.000 0.00 0.00 39.93 1.40
2983 3352 2.125552 TCCCTTGATGCGTGCTCG 60.126 61.111 3.31 3.31 40.37 5.03
3052 3421 2.139917 CTACGTTGCACAAGCTACCAA 58.860 47.619 0.00 0.00 42.38 3.67
3055 3424 2.408704 CACTCTACGTTGCACAAGCTAC 59.591 50.000 0.00 0.00 42.02 3.58
3069 3438 1.372087 GGCATGGTGCTGCACTCTAC 61.372 60.000 29.54 17.53 44.28 2.59
3074 3443 0.171903 CTAAAGGCATGGTGCTGCAC 59.828 55.000 24.02 24.02 44.28 4.57
3092 3461 0.736325 GCGCTCGTGAATACACCACT 60.736 55.000 0.00 0.00 43.34 4.00
3163 3554 4.361783 TCTCAGGGATATCTGGTTTGTCA 58.638 43.478 2.05 0.00 35.58 3.58
3196 3587 0.755686 CAGGGTCCACTGCCTCTATC 59.244 60.000 0.00 0.00 0.00 2.08
3214 3605 1.541310 CGTAAGGAGTGGGCCTGACA 61.541 60.000 4.53 0.00 39.09 3.58
3284 3675 6.015772 GCAGACCCCTTAAAAACACTAAATCA 60.016 38.462 0.00 0.00 0.00 2.57
3297 3688 4.202631 ACAATAAACCTGCAGACCCCTTAA 60.203 41.667 17.39 0.00 0.00 1.85
3348 3739 9.585099 CTAAAACAAGGAGCAATTGCATTTATA 57.415 29.630 30.89 11.35 45.16 0.98
3380 3771 3.381590 GGCCTTCCTTTGATGGTAATGAC 59.618 47.826 0.00 0.00 37.94 3.06
3468 4143 4.020307 TGGATGCATCTCAGTCAAAGTACA 60.020 41.667 25.28 7.87 0.00 2.90
3517 4192 6.549736 ACCTGCATACTCCTTAAAAACACTTT 59.450 34.615 0.00 0.00 0.00 2.66
3518 4193 6.068670 ACCTGCATACTCCTTAAAAACACTT 58.931 36.000 0.00 0.00 0.00 3.16
3666 4343 8.928270 AAACGTCTTATATTAGTGAACAGAGG 57.072 34.615 0.00 0.00 0.00 3.69
3696 4373 7.986889 AGATGTTTTGGCAGTTCATTTTAAACT 59.013 29.630 7.05 0.00 37.44 2.66
3697 4374 8.141835 AGATGTTTTGGCAGTTCATTTTAAAC 57.858 30.769 0.00 0.00 0.00 2.01
3698 4375 8.729805 AAGATGTTTTGGCAGTTCATTTTAAA 57.270 26.923 0.00 0.00 0.00 1.52
3699 4376 9.255304 GTAAGATGTTTTGGCAGTTCATTTTAA 57.745 29.630 10.09 0.00 0.00 1.52
3702 4379 6.815089 TGTAAGATGTTTTGGCAGTTCATTT 58.185 32.000 0.00 0.00 0.00 2.32
3703 4380 6.403866 TGTAAGATGTTTTGGCAGTTCATT 57.596 33.333 0.00 0.00 0.00 2.57
3704 4381 6.594788 ATGTAAGATGTTTTGGCAGTTCAT 57.405 33.333 0.00 0.00 0.00 2.57
3719 4396 5.129485 CACCCTCTGTCCACTAATGTAAGAT 59.871 44.000 0.00 0.00 0.00 2.40
3759 4436 3.332034 AGTACAATTACCAACGGCAGAC 58.668 45.455 0.00 0.00 0.00 3.51
3807 4484 3.745975 TCACACAGAAATTAGCTGGTTCG 59.254 43.478 11.56 0.00 37.69 3.95
3932 4609 6.283694 TCAGATACATAGTCAAAGCATGGTC 58.716 40.000 0.00 0.00 0.00 4.02
3952 4630 0.976641 AGTGCGGAAACTGGATCAGA 59.023 50.000 1.59 0.00 35.18 3.27
4084 4762 3.150848 TCAGCAGCACGTGTAATAGAG 57.849 47.619 18.38 2.03 0.00 2.43
4085 4763 3.586100 TTCAGCAGCACGTGTAATAGA 57.414 42.857 18.38 7.67 0.00 1.98
4111 4789 0.322456 AAGCACGCTTCTGGGCAATA 60.322 50.000 0.00 0.00 0.00 1.90
4165 4843 8.584157 TCAGCAGAAATTAAGGCATAAGAAAAA 58.416 29.630 0.00 0.00 0.00 1.94
4166 4844 8.121305 TCAGCAGAAATTAAGGCATAAGAAAA 57.879 30.769 0.00 0.00 0.00 2.29
4167 4845 7.148018 CCTCAGCAGAAATTAAGGCATAAGAAA 60.148 37.037 0.00 0.00 0.00 2.52
4168 4846 6.319658 CCTCAGCAGAAATTAAGGCATAAGAA 59.680 38.462 0.00 0.00 0.00 2.52
4169 4847 5.824624 CCTCAGCAGAAATTAAGGCATAAGA 59.175 40.000 0.00 0.00 0.00 2.10
4170 4848 5.591877 ACCTCAGCAGAAATTAAGGCATAAG 59.408 40.000 0.00 0.00 0.00 1.73
4180 4858 6.613153 AGTAGTAGAACCTCAGCAGAAATT 57.387 37.500 0.00 0.00 0.00 1.82
4258 4936 3.004024 AGCTCTGAAACAACAAATGCG 57.996 42.857 0.00 0.00 0.00 4.73
4291 4969 9.202273 GTTCTTATTCAAACATGCAAATTGGTA 57.798 29.630 0.00 0.00 0.00 3.25
4375 5053 7.626452 GCTCTGTTGGATTTTACTTACATCCAC 60.626 40.741 0.00 0.00 45.06 4.02
4442 5120 9.023962 TCAATCAAGTAGTTGCCATAAGAAAAT 57.976 29.630 5.35 0.00 33.23 1.82
4450 5128 6.656693 GCCTATATCAATCAAGTAGTTGCCAT 59.343 38.462 5.35 0.00 33.23 4.40
4473 5151 8.250332 TCCAAATTATGTGAGAAATAAACTGCC 58.750 33.333 0.00 0.00 0.00 4.85
4489 5167 7.095910 TGCACCACAATTTACTCCAAATTATG 58.904 34.615 0.00 0.00 43.51 1.90
4535 5213 7.448420 TGTTTATCCAAGGAATTTTGATTGCA 58.552 30.769 0.00 0.00 0.00 4.08
4573 5251 8.458573 AGTCACAGTCCAAAACAATATTAACA 57.541 30.769 0.00 0.00 0.00 2.41
4578 5256 9.167311 GATCTAAGTCACAGTCCAAAACAATAT 57.833 33.333 0.00 0.00 0.00 1.28
4613 5291 7.647907 TTTTTATTTCTGACTACGGTCTCAC 57.352 36.000 0.00 0.00 42.54 3.51
4617 5295 8.665685 ACATCATTTTTATTTCTGACTACGGTC 58.334 33.333 0.00 0.00 42.42 4.79
4709 5388 6.582677 TGGATTCATTTGAAATGTACGGTT 57.417 33.333 16.62 0.00 37.61 4.44
4721 5400 8.259049 ACAAACTAAATGCATGGATTCATTTG 57.741 30.769 25.31 25.31 41.41 2.32
4861 5540 1.753073 GGGTGAGGCATTTTCATGAGG 59.247 52.381 0.00 0.00 31.07 3.86
4888 5567 2.159627 GGTGTGCACTATTTTCACGAGG 59.840 50.000 19.41 0.00 33.69 4.63
4941 5620 3.740044 AACTGTTGATACGAATTGCCG 57.260 42.857 0.00 0.00 0.00 5.69
5012 5691 9.520204 GCACATACAAATAAAATCTTAGCATGT 57.480 29.630 0.00 0.00 0.00 3.21
5037 5716 7.649306 ACTTCACATAAATCAACTCAAAACAGC 59.351 33.333 0.00 0.00 0.00 4.40
5054 5733 4.140536 TCAAATGTGTGGCACTTCACATA 58.859 39.130 19.83 3.18 46.46 2.29
5204 5884 9.959749 GGTCATGTGAAACTCTTAAACAAAATA 57.040 29.630 0.00 0.00 38.04 1.40
5205 5885 8.474025 TGGTCATGTGAAACTCTTAAACAAAAT 58.526 29.630 0.00 0.00 38.04 1.82
5229 5909 6.429078 CCCAATACACATTATCACTGAGATGG 59.571 42.308 9.02 0.00 37.57 3.51
5258 5938 7.606073 GGATATGCAAACCCAAATTGTAAGTTT 59.394 33.333 0.00 0.00 0.00 2.66
5265 5945 2.865551 GCGGATATGCAAACCCAAATTG 59.134 45.455 0.00 0.00 34.15 2.32
5272 5952 1.523758 CCCTAGCGGATATGCAAACC 58.476 55.000 0.00 0.00 37.31 3.27
5289 5969 1.557832 GGGTGGCCTTTTAATTTCCCC 59.442 52.381 3.32 0.00 0.00 4.81
5290 5970 1.557832 GGGGTGGCCTTTTAATTTCCC 59.442 52.381 3.32 1.95 0.00 3.97
5312 5992 2.840753 GGTGTGTGGGTGGGTGGAT 61.841 63.158 0.00 0.00 0.00 3.41
5313 5993 3.494254 GGTGTGTGGGTGGGTGGA 61.494 66.667 0.00 0.00 0.00 4.02
5314 5994 3.145473 ATGGTGTGTGGGTGGGTGG 62.145 63.158 0.00 0.00 0.00 4.61
5316 5996 1.943730 AACATGGTGTGTGGGTGGGT 61.944 55.000 0.00 0.00 41.14 4.51
5321 6001 2.305928 TCAGAAAACATGGTGTGTGGG 58.694 47.619 0.00 0.00 41.14 4.61
5322 6002 4.383850 TTTCAGAAAACATGGTGTGTGG 57.616 40.909 0.00 0.00 41.14 4.17
5350 6030 4.804139 CGGATAAAAACTACTCGACTGCAT 59.196 41.667 0.00 0.00 0.00 3.96
5356 6036 8.537049 TCAAAATTCGGATAAAAACTACTCGA 57.463 30.769 0.00 0.00 0.00 4.04
5399 6081 9.857656 AGTGTATGAAGGATCAAATGATTGTAT 57.142 29.630 0.00 0.00 39.49 2.29
5406 6088 6.094464 TGAAGCAGTGTATGAAGGATCAAATG 59.906 38.462 0.00 0.00 39.49 2.32
5407 6089 6.182627 TGAAGCAGTGTATGAAGGATCAAAT 58.817 36.000 0.00 0.00 39.49 2.32
5410 6092 4.824479 TGAAGCAGTGTATGAAGGATCA 57.176 40.909 0.00 0.00 40.57 2.92
5412 6094 6.435277 ACATTTTGAAGCAGTGTATGAAGGAT 59.565 34.615 0.00 0.00 0.00 3.24
5471 6155 9.147732 TCTTTCACTTATATGATGGAGCTCTAA 57.852 33.333 14.64 2.61 0.00 2.10
5473 6157 7.609097 TCTTTCACTTATATGATGGAGCTCT 57.391 36.000 14.64 0.00 0.00 4.09
5515 6199 2.482721 CGAATAAAGACGGTGGCAAACT 59.517 45.455 0.00 0.00 0.00 2.66
5516 6200 2.481185 TCGAATAAAGACGGTGGCAAAC 59.519 45.455 0.00 0.00 0.00 2.93
5525 6209 9.158364 CATGAAATGGTTTATCGAATAAAGACG 57.842 33.333 0.00 0.00 41.79 4.18
5553 6237 6.205853 TGGTGTATTTCTACGCTTCAACAATT 59.794 34.615 0.00 0.00 38.24 2.32
5557 6241 5.796350 ATGGTGTATTTCTACGCTTCAAC 57.204 39.130 0.00 0.00 38.24 3.18
5606 6291 0.185901 ACACCCAGGCACTTCATGTT 59.814 50.000 0.00 0.00 34.60 2.71
5620 6305 0.106708 TCAGCAGACTTCACACACCC 59.893 55.000 0.00 0.00 0.00 4.61
5623 6308 1.071228 AGCATCAGCAGACTTCACACA 59.929 47.619 0.00 0.00 45.49 3.72
5624 6309 1.463831 CAGCATCAGCAGACTTCACAC 59.536 52.381 0.00 0.00 45.49 3.82
5625 6310 1.071228 ACAGCATCAGCAGACTTCACA 59.929 47.619 0.00 0.00 45.49 3.58
5626 6311 1.731160 GACAGCATCAGCAGACTTCAC 59.269 52.381 0.00 0.00 45.49 3.18
5627 6312 1.345415 TGACAGCATCAGCAGACTTCA 59.655 47.619 0.00 0.00 45.49 3.02
5628 6313 2.090400 TGACAGCATCAGCAGACTTC 57.910 50.000 0.00 0.00 45.49 3.01
5629 6314 2.556144 TTGACAGCATCAGCAGACTT 57.444 45.000 0.00 0.00 45.49 3.01
5631 6316 2.810274 TCTTTTGACAGCATCAGCAGAC 59.190 45.455 0.00 0.00 45.49 3.51
5679 6365 9.561069 ACAAATTATACACACTCTCTTGTTCTT 57.439 29.630 0.00 0.00 0.00 2.52
5680 6366 9.561069 AACAAATTATACACACTCTCTTGTTCT 57.439 29.630 0.00 0.00 30.80 3.01
5707 6393 2.897969 ACCGACACAACATTCTCCTAGT 59.102 45.455 0.00 0.00 0.00 2.57
5737 6434 4.802039 CCATAATTGCTTGCAATCACAGAC 59.198 41.667 19.32 0.00 0.00 3.51
5803 6500 3.188048 CAGCACATGTCCTGAGAAAAGAC 59.812 47.826 11.61 0.00 0.00 3.01
5960 6665 8.757789 CAATATACCAATGCAACTGCTTAATTG 58.242 33.333 2.95 4.99 42.66 2.32
6146 6852 5.750067 GGTTGCCATATAAAATGCAGAACAG 59.250 40.000 0.00 0.00 34.81 3.16
6228 6934 4.064388 TGAAGCATTGATCACTTCGTTCA 58.936 39.130 15.79 9.95 42.17 3.18
6229 6935 4.668576 TGAAGCATTGATCACTTCGTTC 57.331 40.909 15.79 8.00 42.17 3.95
6230 6936 4.940046 AGATGAAGCATTGATCACTTCGTT 59.060 37.500 16.27 9.02 41.41 3.85
6231 6937 4.331992 CAGATGAAGCATTGATCACTTCGT 59.668 41.667 15.50 15.50 41.41 3.85
6232 6938 4.331992 ACAGATGAAGCATTGATCACTTCG 59.668 41.667 15.79 7.44 41.41 3.79
6233 6939 5.353400 TGACAGATGAAGCATTGATCACTTC 59.647 40.000 14.59 14.59 41.41 3.01
6236 6942 5.296035 TGATGACAGATGAAGCATTGATCAC 59.704 40.000 0.00 0.00 41.41 3.06
6237 6943 5.433526 TGATGACAGATGAAGCATTGATCA 58.566 37.500 0.00 0.00 41.41 2.92
6239 6945 6.961360 AATGATGACAGATGAAGCATTGAT 57.039 33.333 0.00 0.00 0.00 2.57
6240 6946 6.769134 AAATGATGACAGATGAAGCATTGA 57.231 33.333 0.00 0.00 0.00 2.57
6338 7064 7.172190 TGCATAAAAATCAAAATTCAAAGCCGA 59.828 29.630 0.00 0.00 0.00 5.54
6621 7355 5.191727 TCTTGATTCCCTTGGCTGATAAA 57.808 39.130 0.00 0.00 0.00 1.40
6877 7616 8.154856 ACTACAACTAATAGGAAAGTGAAAGCA 58.845 33.333 0.00 0.00 0.00 3.91
6911 7650 2.024846 TGTCCCTGGTTTCCACAGAAAA 60.025 45.455 0.00 0.00 43.48 2.29
7038 7777 0.679002 CATGGTCAGAACCCAGCAGG 60.679 60.000 0.00 0.00 45.83 4.85
7244 7985 6.694411 GGAAGCTGCTGATTATAACATTGTTG 59.306 38.462 12.30 0.00 0.00 3.33
7253 7994 5.357742 TGAACTGGAAGCTGCTGATTATA 57.642 39.130 1.35 0.00 37.60 0.98
7293 8056 9.997482 TCTTTTTGACAACACAAAAGAGTATAC 57.003 29.630 8.16 0.00 45.85 1.47
7298 8061 9.734620 TCATATCTTTTTGACAACACAAAAGAG 57.265 29.630 14.75 0.00 45.85 2.85
7479 8262 5.467735 TCATGTCAACACATTCAGAGTTCAG 59.532 40.000 0.00 0.00 40.66 3.02
7765 8681 1.355381 TGTCCATTGATTCAGGCTGGT 59.645 47.619 15.73 3.62 0.00 4.00
7951 8962 6.097554 CCCTGACTTCTAAGCTAGAGAATCAA 59.902 42.308 10.55 1.14 37.82 2.57
7987 9042 9.998106 AAGGTACATGAATGTAATACTCCATAC 57.002 33.333 0.00 0.00 44.11 2.39
8135 9192 8.165239 TGTCATTGCCAATATACTAATGGTTC 57.835 34.615 0.00 0.00 36.57 3.62
8411 9557 3.491619 CCTTCTTCGACGATGTGGATGAT 60.492 47.826 10.18 0.00 28.59 2.45
8628 9774 3.144657 TCGGTATATAGCTTCCGGTGA 57.855 47.619 10.08 0.00 42.71 4.02
8631 9777 4.817517 ACAAATCGGTATATAGCTTCCGG 58.182 43.478 10.08 0.00 42.71 5.14
8684 9832 8.562052 GTGCATTTCAAAATTCATTTCCTTCTT 58.438 29.630 0.00 0.00 0.00 2.52
8911 10063 2.534019 CGCGCAAATATCACCCGCT 61.534 57.895 8.75 0.00 42.21 5.52
8913 10065 1.275657 GACGCGCAAATATCACCCG 59.724 57.895 5.73 0.00 0.00 5.28
8945 10097 9.355215 GGGAGTACATGTATATTCTTGTAATCG 57.645 37.037 19.70 0.00 40.50 3.34
8967 10119 9.757227 CACTCTTATATTTCTTTACAGAGGGAG 57.243 37.037 0.00 0.00 32.92 4.30
8968 10120 9.268282 ACACTCTTATATTTCTTTACAGAGGGA 57.732 33.333 2.59 0.00 34.50 4.20
8969 10121 9.892130 AACACTCTTATATTTCTTTACAGAGGG 57.108 33.333 0.00 0.00 36.55 4.30
8998 10150 9.134055 AGGGAGTACATCACTAAAGTAGTAATC 57.866 37.037 0.00 0.00 41.08 1.75
9001 10153 7.774157 CAGAGGGAGTACATCACTAAAGTAGTA 59.226 40.741 0.00 0.00 43.76 1.82
9002 10154 6.603997 CAGAGGGAGTACATCACTAAAGTAGT 59.396 42.308 0.00 0.00 43.76 2.73
9003 10155 6.603997 ACAGAGGGAGTACATCACTAAAGTAG 59.396 42.308 0.00 0.00 43.76 2.57
9004 10156 6.491383 ACAGAGGGAGTACATCACTAAAGTA 58.509 40.000 0.00 0.00 43.76 2.24
9005 10157 5.334421 ACAGAGGGAGTACATCACTAAAGT 58.666 41.667 0.00 0.00 43.76 2.66
9006 10158 5.923733 ACAGAGGGAGTACATCACTAAAG 57.076 43.478 0.00 0.00 43.76 1.85
9007 10159 7.672660 TCTTTACAGAGGGAGTACATCACTAAA 59.327 37.037 0.00 0.00 43.76 1.85
9008 10160 7.179966 TCTTTACAGAGGGAGTACATCACTAA 58.820 38.462 0.00 0.00 43.76 2.24
9009 10161 6.728411 TCTTTACAGAGGGAGTACATCACTA 58.272 40.000 0.00 0.00 43.76 2.74
9011 10163 5.916661 TCTTTACAGAGGGAGTACATCAC 57.083 43.478 0.00 0.00 0.00 3.06
9012 10164 6.928348 TTTCTTTACAGAGGGAGTACATCA 57.072 37.500 0.00 0.00 0.00 3.07
9018 10170 9.495382 ACTCTTATATTTCTTTACAGAGGGAGT 57.505 33.333 0.00 0.00 32.21 3.85
9019 10171 9.757227 CACTCTTATATTTCTTTACAGAGGGAG 57.243 37.037 0.00 0.00 32.92 4.30
9020 10172 9.268282 ACACTCTTATATTTCTTTACAGAGGGA 57.732 33.333 2.59 0.00 34.50 4.20
9021 10173 9.892130 AACACTCTTATATTTCTTTACAGAGGG 57.108 33.333 0.00 0.00 36.55 4.30
9049 10201 9.196139 AGCTTCAGATCACTAAAGTAGTAATCT 57.804 33.333 0.00 0.00 43.07 2.40
9050 10202 9.458374 GAGCTTCAGATCACTAAAGTAGTAATC 57.542 37.037 0.00 0.00 37.23 1.75
9051 10203 9.196139 AGAGCTTCAGATCACTAAAGTAGTAAT 57.804 33.333 0.00 0.00 37.23 1.89
9052 10204 8.582657 AGAGCTTCAGATCACTAAAGTAGTAA 57.417 34.615 0.00 0.00 37.23 2.24
9053 10205 8.582657 AAGAGCTTCAGATCACTAAAGTAGTA 57.417 34.615 0.00 0.00 37.23 1.82
9054 10206 7.475137 AAGAGCTTCAGATCACTAAAGTAGT 57.525 36.000 0.00 0.00 40.28 2.73
9057 10209 9.979578 CATATAAGAGCTTCAGATCACTAAAGT 57.020 33.333 0.00 0.00 31.88 2.66
9058 10210 9.979578 ACATATAAGAGCTTCAGATCACTAAAG 57.020 33.333 0.00 0.00 31.88 1.85
9059 10211 9.973450 GACATATAAGAGCTTCAGATCACTAAA 57.027 33.333 0.00 0.00 31.88 1.85
9060 10212 9.360901 AGACATATAAGAGCTTCAGATCACTAA 57.639 33.333 0.00 0.00 31.88 2.24
9061 10213 8.932434 AGACATATAAGAGCTTCAGATCACTA 57.068 34.615 0.00 0.00 31.88 2.74
9062 10214 7.838079 AGACATATAAGAGCTTCAGATCACT 57.162 36.000 0.00 0.00 31.88 3.41
9063 10215 8.885494 AAAGACATATAAGAGCTTCAGATCAC 57.115 34.615 0.00 0.00 31.88 3.06
9066 10218 9.941325 CCATAAAGACATATAAGAGCTTCAGAT 57.059 33.333 0.00 0.00 0.00 2.90
9067 10219 9.147732 TCCATAAAGACATATAAGAGCTTCAGA 57.852 33.333 0.00 0.00 0.00 3.27
9068 10220 9.421806 CTCCATAAAGACATATAAGAGCTTCAG 57.578 37.037 0.00 0.00 0.00 3.02
9069 10221 8.370940 CCTCCATAAAGACATATAAGAGCTTCA 58.629 37.037 0.00 0.00 0.00 3.02
9070 10222 7.821846 CCCTCCATAAAGACATATAAGAGCTTC 59.178 40.741 0.00 0.00 0.00 3.86
9071 10223 7.514127 TCCCTCCATAAAGACATATAAGAGCTT 59.486 37.037 0.00 0.00 0.00 3.74
9072 10224 7.019388 TCCCTCCATAAAGACATATAAGAGCT 58.981 38.462 0.00 0.00 0.00 4.09
9073 10225 7.038658 ACTCCCTCCATAAAGACATATAAGAGC 60.039 40.741 0.00 0.00 0.00 4.09
9074 10226 8.429237 ACTCCCTCCATAAAGACATATAAGAG 57.571 38.462 0.00 0.00 0.00 2.85
9079 10231 8.820831 CAAGATACTCCCTCCATAAAGACATAT 58.179 37.037 0.00 0.00 0.00 1.78
9080 10232 7.789831 ACAAGATACTCCCTCCATAAAGACATA 59.210 37.037 0.00 0.00 0.00 2.29
9081 10233 6.617371 ACAAGATACTCCCTCCATAAAGACAT 59.383 38.462 0.00 0.00 0.00 3.06
9082 10234 5.964477 ACAAGATACTCCCTCCATAAAGACA 59.036 40.000 0.00 0.00 0.00 3.41
9083 10235 6.487299 ACAAGATACTCCCTCCATAAAGAC 57.513 41.667 0.00 0.00 0.00 3.01
9084 10236 8.651389 CATTACAAGATACTCCCTCCATAAAGA 58.349 37.037 0.00 0.00 0.00 2.52
9085 10237 8.432805 ACATTACAAGATACTCCCTCCATAAAG 58.567 37.037 0.00 0.00 0.00 1.85
9086 10238 8.331931 ACATTACAAGATACTCCCTCCATAAA 57.668 34.615 0.00 0.00 0.00 1.40
9087 10239 7.931015 ACATTACAAGATACTCCCTCCATAA 57.069 36.000 0.00 0.00 0.00 1.90
9088 10240 7.931015 AACATTACAAGATACTCCCTCCATA 57.069 36.000 0.00 0.00 0.00 2.74
9089 10241 6.831664 AACATTACAAGATACTCCCTCCAT 57.168 37.500 0.00 0.00 0.00 3.41
9090 10242 6.183360 GCTAACATTACAAGATACTCCCTCCA 60.183 42.308 0.00 0.00 0.00 3.86
9091 10243 6.183360 TGCTAACATTACAAGATACTCCCTCC 60.183 42.308 0.00 0.00 0.00 4.30
9092 10244 6.817184 TGCTAACATTACAAGATACTCCCTC 58.183 40.000 0.00 0.00 0.00 4.30
9093 10245 6.808321 TGCTAACATTACAAGATACTCCCT 57.192 37.500 0.00 0.00 0.00 4.20
9094 10246 7.272978 TCTTGCTAACATTACAAGATACTCCC 58.727 38.462 0.75 0.00 43.55 4.30
9168 10320 5.211973 TCCACTTCATCTATTGAGTAGGCT 58.788 41.667 0.00 0.00 35.27 4.58
9175 10327 4.832248 ACGCTTTCCACTTCATCTATTGA 58.168 39.130 0.00 0.00 0.00 2.57
9190 10342 1.671379 GGTGACCAGGGACGCTTTC 60.671 63.158 0.00 0.00 0.00 2.62
9191 10343 2.147387 AGGTGACCAGGGACGCTTT 61.147 57.895 3.63 0.00 0.00 3.51
9232 10386 8.037758 AGCTTCTGCACATACATAGTAATATCC 58.962 37.037 0.00 0.00 42.74 2.59
9332 10493 3.039588 GAACGAAACGGCGAGCCA 61.040 61.111 16.62 0.00 35.37 4.75
9340 10501 2.124903 CGGATATCCCTGAACGAAACG 58.875 52.381 16.36 0.00 0.00 3.60
9346 10507 0.038159 CGAGGCGGATATCCCTGAAC 60.038 60.000 16.36 2.32 0.00 3.18
9365 10526 0.387929 TGACGACCTTCGCCATATCC 59.612 55.000 0.00 0.00 45.12 2.59
9374 10535 1.429463 AGTTTGCGATGACGACCTTC 58.571 50.000 0.00 0.00 42.66 3.46
9401 10562 4.857037 TGAGTCGATTGTCAATCAACTACG 59.143 41.667 17.24 7.31 35.39 3.51
9402 10563 6.893958 ATGAGTCGATTGTCAATCAACTAC 57.106 37.500 17.24 12.00 35.39 2.73
9404 10565 6.205464 ACAAATGAGTCGATTGTCAATCAACT 59.795 34.615 17.24 17.24 37.84 3.16
9405 10566 6.373779 ACAAATGAGTCGATTGTCAATCAAC 58.626 36.000 22.34 15.82 38.97 3.18
9410 10571 7.041721 AGCTATACAAATGAGTCGATTGTCAA 58.958 34.615 14.48 6.00 38.22 3.18
9411 10572 6.573434 AGCTATACAAATGAGTCGATTGTCA 58.427 36.000 14.48 1.45 38.22 3.58
9412 10573 7.327275 CCTAGCTATACAAATGAGTCGATTGTC 59.673 40.741 14.48 3.84 38.22 3.18
9413 10574 7.148641 CCTAGCTATACAAATGAGTCGATTGT 58.851 38.462 15.17 15.17 40.22 2.71
9414 10575 6.090088 GCCTAGCTATACAAATGAGTCGATTG 59.910 42.308 0.00 6.25 0.00 2.67
9415 10576 6.015010 AGCCTAGCTATACAAATGAGTCGATT 60.015 38.462 0.00 0.00 36.99 3.34
9416 10577 5.478679 AGCCTAGCTATACAAATGAGTCGAT 59.521 40.000 0.00 0.00 36.99 3.59
9417 10578 4.827835 AGCCTAGCTATACAAATGAGTCGA 59.172 41.667 0.00 0.00 36.99 4.20
9418 10579 4.920340 CAGCCTAGCTATACAAATGAGTCG 59.080 45.833 0.00 0.00 36.40 4.18
9419 10580 6.090483 TCAGCCTAGCTATACAAATGAGTC 57.910 41.667 0.00 0.00 36.40 3.36
9469 10632 3.835395 GAGGAGGAATATCGAGGTCCATT 59.165 47.826 12.78 0.00 33.57 3.16
9479 10642 5.651387 TGATGACGATGAGGAGGAATATC 57.349 43.478 0.00 0.00 0.00 1.63
9480 10643 6.404708 CATTGATGACGATGAGGAGGAATAT 58.595 40.000 0.00 0.00 39.55 1.28
9576 10746 9.241317 GTAAGAATTTTCATTGAGTATGGCATG 57.759 33.333 10.98 0.00 34.85 4.06
9586 10756 9.829507 AACCATTTGTGTAAGAATTTTCATTGA 57.170 25.926 0.00 0.00 0.00 2.57
9630 10800 9.836076 TTTAATCGATACTGTATATTCTGGTCG 57.164 33.333 0.00 0.00 0.00 4.79
9674 10844 8.388103 GCGTTCAACTATTGTGTGTATTCTATT 58.612 33.333 0.00 0.00 0.00 1.73
9696 10866 3.555139 CCATTTGTGTGAATTTGTGCGTT 59.445 39.130 0.00 0.00 0.00 4.84
9697 10867 3.122297 CCATTTGTGTGAATTTGTGCGT 58.878 40.909 0.00 0.00 0.00 5.24
9755 10925 5.105513 TGTGAGCTTGTAAACTATGATCGGA 60.106 40.000 0.00 0.00 0.00 4.55
9782 10954 8.056571 GCGTTCAACTATTGTGTGTATTCTATC 58.943 37.037 0.00 0.00 0.00 2.08
9833 11005 1.850377 TGTGCCGCAAAACTGAATTG 58.150 45.000 0.00 0.00 0.00 2.32
9842 11014 2.518112 TCCTGCTTGTGCCGCAAA 60.518 55.556 0.00 0.00 36.88 3.68
9848 11020 0.536006 AAGACACCTCCTGCTTGTGC 60.536 55.000 0.00 0.00 40.20 4.57
9860 11032 3.003897 TGGCGTTGAAATAACAAGACACC 59.996 43.478 0.00 0.00 0.00 4.16


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.