Multiple sequence alignment - TraesCS2D01G016500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2D01G016500 chr2D 100.000 4549 0 0 1 4549 7977624 7973076 0.000000e+00 8401.0
1 TraesCS2D01G016500 chr2D 92.093 3402 150 37 434 3780 8284678 8281341 0.000000e+00 4682.0
2 TraesCS2D01G016500 chr2D 96.667 420 12 2 1 419 548685908 548685490 0.000000e+00 697.0
3 TraesCS2D01G016500 chr2D 85.096 624 59 21 3852 4462 8281152 8280550 1.400000e-169 606.0
4 TraesCS2D01G016500 chr2D 97.297 37 1 0 3790 3826 7973798 7973762 3.800000e-06 63.9
5 TraesCS2D01G016500 chr2D 97.297 37 1 0 3827 3863 7973835 7973799 3.800000e-06 63.9
6 TraesCS2D01G016500 chrUn 88.865 2281 134 46 432 2643 11744607 11746836 0.000000e+00 2695.0
7 TraesCS2D01G016500 chrUn 91.300 954 62 15 2889 3826 11747164 11748112 0.000000e+00 1282.0
8 TraesCS2D01G016500 chrUn 84.696 575 68 12 3113 3677 389770255 389769691 1.430000e-154 556.0
9 TraesCS2D01G016500 chrUn 84.429 578 71 11 3110 3677 353613867 353614435 6.650000e-153 551.0
10 TraesCS2D01G016500 chrUn 96.154 338 8 4 3833 4169 11748083 11748416 8.600000e-152 547.0
11 TraesCS2D01G016500 chrUn 90.956 387 18 6 4161 4546 11750312 11750682 5.250000e-139 505.0
12 TraesCS2D01G016500 chrUn 86.408 206 21 3 3110 3310 372507287 372507490 7.660000e-53 219.0
13 TraesCS2D01G016500 chrUn 83.784 222 30 5 2291 2507 353613257 353613477 5.970000e-49 206.0
14 TraesCS2D01G016500 chrUn 83.333 222 31 5 2291 2507 372506677 372506897 2.780000e-47 200.0
15 TraesCS2D01G016500 chrUn 86.508 126 14 3 1997 2120 353613002 353613126 7.940000e-28 135.0
16 TraesCS2D01G016500 chrUn 86.508 126 14 3 1997 2120 372506422 372506546 7.940000e-28 135.0
17 TraesCS2D01G016500 chr2B 87.495 2287 176 45 432 2643 4650087 4647836 0.000000e+00 2538.0
18 TraesCS2D01G016500 chr2B 91.646 790 46 8 2082 2866 719774247 719773473 0.000000e+00 1075.0
19 TraesCS2D01G016500 chr2B 94.860 681 27 3 3103 3782 4647209 4646536 0.000000e+00 1057.0
20 TraesCS2D01G016500 chr2B 93.023 473 30 2 2562 3031 4632117 4631645 0.000000e+00 688.0
21 TraesCS2D01G016500 chr2B 86.275 612 57 15 3151 3753 4631582 4630989 1.380000e-179 640.0
22 TraesCS2D01G016500 chr2B 92.941 340 21 2 2228 2565 4632577 4632239 4.090000e-135 492.0
23 TraesCS2D01G016500 chr2B 95.425 153 7 0 3841 3993 4646500 4646348 1.260000e-60 244.0
24 TraesCS2D01G016500 chr2B 86.957 184 23 1 1170 1353 4619008 4618826 5.970000e-49 206.0
25 TraesCS2D01G016500 chr2B 89.831 118 10 2 4138 4255 4646261 4646146 2.830000e-32 150.0
26 TraesCS2D01G016500 chr5D 96.528 432 12 2 1 431 566073165 566072736 0.000000e+00 712.0
27 TraesCS2D01G016500 chr5D 95.972 422 15 2 1 420 44031125 44030704 0.000000e+00 684.0
28 TraesCS2D01G016500 chr5D 95.745 423 15 1 1 420 50106389 50105967 0.000000e+00 678.0
29 TraesCS2D01G016500 chr5D 94.907 432 18 3 1 431 520070215 520069787 0.000000e+00 673.0
30 TraesCS2D01G016500 chr7D 96.667 420 12 1 1 420 563959156 563958739 0.000000e+00 697.0
31 TraesCS2D01G016500 chr3D 96.209 422 13 3 1 419 538579351 538578930 0.000000e+00 688.0
32 TraesCS2D01G016500 chr3D 96.377 414 14 1 3 415 574870816 574870403 0.000000e+00 680.0
33 TraesCS2D01G016500 chr6A 94.860 428 19 2 1 425 9534028 9534455 0.000000e+00 665.0
34 TraesCS2D01G016500 chr6A 87.912 91 7 1 2045 2131 390567767 390567857 2.240000e-18 104.0
35 TraesCS2D01G016500 chr5A 84.116 447 50 8 2054 2480 18687916 18688361 3.270000e-111 412.0
36 TraesCS2D01G016500 chr4B 82.776 389 45 8 2045 2413 575895275 575895661 1.220000e-85 327.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2D01G016500 chr2D 7973076 7977624 4548 True 2842.933333 8401 98.198000 1 4549 3 chr2D.!!$R2 4548
1 TraesCS2D01G016500 chr2D 8280550 8284678 4128 True 2644.000000 4682 88.594500 434 4462 2 chr2D.!!$R3 4028
2 TraesCS2D01G016500 chrUn 11744607 11750682 6075 False 1257.250000 2695 91.818750 432 4546 4 chrUn.!!$F1 4114
3 TraesCS2D01G016500 chrUn 389769691 389770255 564 True 556.000000 556 84.696000 3113 3677 1 chrUn.!!$R1 564
4 TraesCS2D01G016500 chrUn 353613002 353614435 1433 False 297.333333 551 84.907000 1997 3677 3 chrUn.!!$F2 1680
5 TraesCS2D01G016500 chr2B 719773473 719774247 774 True 1075.000000 1075 91.646000 2082 2866 1 chr2B.!!$R2 784
6 TraesCS2D01G016500 chr2B 4646146 4650087 3941 True 997.250000 2538 91.902750 432 4255 4 chr2B.!!$R4 3823
7 TraesCS2D01G016500 chr2B 4630989 4632577 1588 True 606.666667 688 90.746333 2228 3753 3 chr2B.!!$R3 1525

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
265 266 0.106918 TATTGGTCCCGGTTGATGCC 60.107 55.0 0.00 0.0 0.00 4.40 F
396 397 0.108472 CGACCCTTTAGTCCCGGTTC 60.108 60.0 0.00 0.0 32.91 3.62 F
500 505 0.327924 TGGGTGAAATCTGCCGATGT 59.672 50.0 0.00 0.0 0.00 3.06 F
1540 1597 0.391263 GGTCGTAAACTCTGCCTGGG 60.391 60.0 0.00 0.0 0.00 4.45 F
3244 3696 0.466372 TCGAGTCGGAGATCATGGCT 60.466 55.0 13.54 0.0 40.67 4.75 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1773 1836 0.112412 GGTGTCCCTGGTTTCCACAT 59.888 55.000 0.00 0.0 0.0 3.21 R
2262 2362 0.877071 CCACTGATGAAGCACACCAC 59.123 55.000 0.00 0.0 0.0 4.16 R
2265 2365 2.983229 AGATCCACTGATGAAGCACAC 58.017 47.619 0.00 0.0 0.0 3.82 R
3412 3864 0.393077 AGCCGTACTGCTGAACAACT 59.607 50.000 11.32 0.0 40.9 3.16 R
4069 4653 1.243902 GGCGTCAAATTCCTGTTCCA 58.756 50.000 0.00 0.0 0.0 3.53 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
23 24 6.710692 TGTATGCATATGTTCATGACGATC 57.289 37.500 10.16 0.00 0.00 3.69
24 25 6.458210 TGTATGCATATGTTCATGACGATCT 58.542 36.000 10.16 0.00 0.00 2.75
25 26 6.930722 TGTATGCATATGTTCATGACGATCTT 59.069 34.615 10.16 0.00 0.00 2.40
26 27 5.912360 TGCATATGTTCATGACGATCTTC 57.088 39.130 4.29 0.00 0.00 2.87
27 28 5.604565 TGCATATGTTCATGACGATCTTCT 58.395 37.500 4.29 0.00 0.00 2.85
28 29 5.464389 TGCATATGTTCATGACGATCTTCTG 59.536 40.000 4.29 0.00 0.00 3.02
29 30 5.464722 GCATATGTTCATGACGATCTTCTGT 59.535 40.000 4.29 0.00 0.00 3.41
30 31 6.018425 GCATATGTTCATGACGATCTTCTGTT 60.018 38.462 4.29 0.00 0.00 3.16
31 32 7.466455 GCATATGTTCATGACGATCTTCTGTTT 60.466 37.037 4.29 0.00 0.00 2.83
32 33 5.845985 TGTTCATGACGATCTTCTGTTTC 57.154 39.130 0.00 0.00 0.00 2.78
33 34 4.690748 TGTTCATGACGATCTTCTGTTTCC 59.309 41.667 0.00 0.00 0.00 3.13
34 35 4.808414 TCATGACGATCTTCTGTTTCCT 57.192 40.909 0.48 0.00 0.00 3.36
35 36 5.152623 TCATGACGATCTTCTGTTTCCTT 57.847 39.130 0.48 0.00 0.00 3.36
36 37 5.171476 TCATGACGATCTTCTGTTTCCTTC 58.829 41.667 0.48 0.00 0.00 3.46
37 38 4.600692 TGACGATCTTCTGTTTCCTTCA 57.399 40.909 0.48 0.00 0.00 3.02
38 39 5.152623 TGACGATCTTCTGTTTCCTTCAT 57.847 39.130 0.48 0.00 0.00 2.57
39 40 5.551233 TGACGATCTTCTGTTTCCTTCATT 58.449 37.500 0.48 0.00 0.00 2.57
40 41 5.997746 TGACGATCTTCTGTTTCCTTCATTT 59.002 36.000 0.48 0.00 0.00 2.32
41 42 6.073058 TGACGATCTTCTGTTTCCTTCATTTG 60.073 38.462 0.48 0.00 0.00 2.32
42 43 5.091431 CGATCTTCTGTTTCCTTCATTTGC 58.909 41.667 0.00 0.00 0.00 3.68
43 44 5.106396 CGATCTTCTGTTTCCTTCATTTGCT 60.106 40.000 0.00 0.00 0.00 3.91
44 45 6.569226 CGATCTTCTGTTTCCTTCATTTGCTT 60.569 38.462 0.00 0.00 0.00 3.91
45 46 7.361201 CGATCTTCTGTTTCCTTCATTTGCTTA 60.361 37.037 0.00 0.00 0.00 3.09
46 47 6.970484 TCTTCTGTTTCCTTCATTTGCTTAC 58.030 36.000 0.00 0.00 0.00 2.34
47 48 6.772716 TCTTCTGTTTCCTTCATTTGCTTACT 59.227 34.615 0.00 0.00 0.00 2.24
48 49 7.936847 TCTTCTGTTTCCTTCATTTGCTTACTA 59.063 33.333 0.00 0.00 0.00 1.82
49 50 7.672983 TCTGTTTCCTTCATTTGCTTACTAG 57.327 36.000 0.00 0.00 0.00 2.57
60 61 1.744374 GCTTACTAGCTAGCGTGTCG 58.256 55.000 20.91 11.45 44.27 4.35
61 62 1.329906 GCTTACTAGCTAGCGTGTCGA 59.670 52.381 20.91 8.31 44.27 4.20
62 63 2.600320 GCTTACTAGCTAGCGTGTCGAG 60.600 54.545 20.91 15.86 44.27 4.04
63 64 2.306341 TACTAGCTAGCGTGTCGAGT 57.694 50.000 20.91 12.62 0.00 4.18
64 65 1.008329 ACTAGCTAGCGTGTCGAGTC 58.992 55.000 20.91 0.00 0.00 3.36
65 66 0.305313 CTAGCTAGCGTGTCGAGTCC 59.695 60.000 8.05 0.00 0.00 3.85
66 67 0.107800 TAGCTAGCGTGTCGAGTCCT 60.108 55.000 9.55 0.00 0.00 3.85
67 68 1.062845 GCTAGCGTGTCGAGTCCTC 59.937 63.158 0.00 0.00 0.00 3.71
68 69 1.370587 GCTAGCGTGTCGAGTCCTCT 61.371 60.000 0.00 0.00 0.00 3.69
69 70 0.653636 CTAGCGTGTCGAGTCCTCTC 59.346 60.000 0.00 0.00 37.35 3.20
70 71 0.249676 TAGCGTGTCGAGTCCTCTCT 59.750 55.000 0.00 0.00 38.45 3.10
71 72 0.249676 AGCGTGTCGAGTCCTCTCTA 59.750 55.000 0.00 0.00 38.45 2.43
72 73 1.134340 AGCGTGTCGAGTCCTCTCTAT 60.134 52.381 0.00 0.00 38.45 1.98
73 74 2.102757 AGCGTGTCGAGTCCTCTCTATA 59.897 50.000 0.00 0.00 38.45 1.31
74 75 2.221517 GCGTGTCGAGTCCTCTCTATAC 59.778 54.545 0.00 0.00 38.45 1.47
75 76 2.472115 CGTGTCGAGTCCTCTCTATACG 59.528 54.545 0.00 5.19 41.42 3.06
76 77 3.456280 GTGTCGAGTCCTCTCTATACGT 58.544 50.000 0.00 0.00 38.45 3.57
77 78 4.615949 GTGTCGAGTCCTCTCTATACGTA 58.384 47.826 0.00 0.00 38.45 3.57
78 79 5.229423 GTGTCGAGTCCTCTCTATACGTAT 58.771 45.833 13.54 13.54 38.45 3.06
79 80 6.385843 GTGTCGAGTCCTCTCTATACGTATA 58.614 44.000 14.39 14.39 38.45 1.47
80 81 6.527722 GTGTCGAGTCCTCTCTATACGTATAG 59.472 46.154 29.12 29.12 38.45 1.31
81 82 6.208402 TGTCGAGTCCTCTCTATACGTATAGT 59.792 42.308 31.73 17.38 38.45 2.12
82 83 7.391833 TGTCGAGTCCTCTCTATACGTATAGTA 59.608 40.741 31.73 22.90 38.45 1.82
83 84 7.910162 GTCGAGTCCTCTCTATACGTATAGTAG 59.090 44.444 31.73 27.97 37.36 2.57
84 85 7.066887 TCGAGTCCTCTCTATACGTATAGTAGG 59.933 44.444 33.39 33.39 39.34 3.18
85 86 7.148086 CGAGTCCTCTCTATACGTATAGTAGGT 60.148 44.444 34.92 27.26 39.20 3.08
86 87 9.184523 GAGTCCTCTCTATACGTATAGTAGGTA 57.815 40.741 34.92 27.21 39.20 3.08
87 88 9.189156 AGTCCTCTCTATACGTATAGTAGGTAG 57.811 40.741 34.92 27.20 39.20 3.18
88 89 7.920682 GTCCTCTCTATACGTATAGTAGGTAGC 59.079 44.444 34.92 28.16 39.20 3.58
89 90 6.917477 CCTCTCTATACGTATAGTAGGTAGCG 59.083 46.154 32.24 22.37 38.94 4.26
90 91 7.397892 TCTCTATACGTATAGTAGGTAGCGT 57.602 40.000 31.73 2.56 38.94 5.07
91 92 7.476667 TCTCTATACGTATAGTAGGTAGCGTC 58.523 42.308 31.73 0.00 38.94 5.19
92 93 6.258899 TCTATACGTATAGTAGGTAGCGTCG 58.741 44.000 31.73 11.38 38.94 5.12
93 94 3.371102 ACGTATAGTAGGTAGCGTCGA 57.629 47.619 0.00 0.00 0.00 4.20
94 95 3.053455 ACGTATAGTAGGTAGCGTCGAC 58.947 50.000 5.18 5.18 0.00 4.20
95 96 2.410053 CGTATAGTAGGTAGCGTCGACC 59.590 54.545 10.58 2.76 37.22 4.79
96 97 2.627515 ATAGTAGGTAGCGTCGACCA 57.372 50.000 10.58 0.00 39.65 4.02
97 98 2.401583 TAGTAGGTAGCGTCGACCAA 57.598 50.000 10.58 0.00 39.65 3.67
98 99 1.093159 AGTAGGTAGCGTCGACCAAG 58.907 55.000 10.58 0.00 39.65 3.61
99 100 0.525029 GTAGGTAGCGTCGACCAAGC 60.525 60.000 10.58 7.95 39.65 4.01
100 101 0.961857 TAGGTAGCGTCGACCAAGCA 60.962 55.000 10.58 0.00 39.65 3.91
101 102 2.092882 GGTAGCGTCGACCAAGCAC 61.093 63.158 10.58 8.55 36.91 4.40
102 103 1.372499 GTAGCGTCGACCAAGCACA 60.372 57.895 10.58 0.00 0.00 4.57
103 104 1.080772 TAGCGTCGACCAAGCACAG 60.081 57.895 10.58 0.00 0.00 3.66
104 105 1.520600 TAGCGTCGACCAAGCACAGA 61.521 55.000 10.58 0.00 0.00 3.41
105 106 2.375766 GCGTCGACCAAGCACAGAG 61.376 63.158 10.58 0.00 0.00 3.35
106 107 1.285950 CGTCGACCAAGCACAGAGA 59.714 57.895 10.58 0.00 0.00 3.10
107 108 0.109086 CGTCGACCAAGCACAGAGAT 60.109 55.000 10.58 0.00 0.00 2.75
108 109 1.132453 CGTCGACCAAGCACAGAGATA 59.868 52.381 10.58 0.00 0.00 1.98
109 110 2.415491 CGTCGACCAAGCACAGAGATAA 60.415 50.000 10.58 0.00 0.00 1.75
110 111 3.182967 GTCGACCAAGCACAGAGATAAG 58.817 50.000 3.51 0.00 0.00 1.73
111 112 3.089284 TCGACCAAGCACAGAGATAAGA 58.911 45.455 0.00 0.00 0.00 2.10
112 113 3.129462 TCGACCAAGCACAGAGATAAGAG 59.871 47.826 0.00 0.00 0.00 2.85
113 114 3.129462 CGACCAAGCACAGAGATAAGAGA 59.871 47.826 0.00 0.00 0.00 3.10
114 115 4.681744 GACCAAGCACAGAGATAAGAGAG 58.318 47.826 0.00 0.00 0.00 3.20
115 116 3.450457 ACCAAGCACAGAGATAAGAGAGG 59.550 47.826 0.00 0.00 0.00 3.69
116 117 3.703556 CCAAGCACAGAGATAAGAGAGGA 59.296 47.826 0.00 0.00 0.00 3.71
117 118 4.441356 CCAAGCACAGAGATAAGAGAGGAC 60.441 50.000 0.00 0.00 0.00 3.85
118 119 3.974719 AGCACAGAGATAAGAGAGGACA 58.025 45.455 0.00 0.00 0.00 4.02
119 120 3.699038 AGCACAGAGATAAGAGAGGACAC 59.301 47.826 0.00 0.00 0.00 3.67
120 121 3.699038 GCACAGAGATAAGAGAGGACACT 59.301 47.826 0.00 0.00 0.00 3.55
121 122 4.159506 GCACAGAGATAAGAGAGGACACTT 59.840 45.833 0.00 0.00 0.00 3.16
122 123 5.678616 GCACAGAGATAAGAGAGGACACTTC 60.679 48.000 0.00 0.00 0.00 3.01
123 124 5.652014 CACAGAGATAAGAGAGGACACTTCT 59.348 44.000 0.00 0.00 0.00 2.85
124 125 5.885912 ACAGAGATAAGAGAGGACACTTCTC 59.114 44.000 0.00 0.00 0.00 2.87
125 126 6.122277 CAGAGATAAGAGAGGACACTTCTCT 58.878 44.000 7.43 7.43 43.56 3.10
137 138 8.856103 AGAGGACACTTCTCTCTATTAATTAGC 58.144 37.037 0.00 0.00 36.99 3.09
138 139 8.776061 AGGACACTTCTCTCTATTAATTAGCT 57.224 34.615 0.00 0.00 0.00 3.32
139 140 9.869667 AGGACACTTCTCTCTATTAATTAGCTA 57.130 33.333 0.00 0.00 0.00 3.32
141 142 9.620660 GACACTTCTCTCTATTAATTAGCTAGC 57.379 37.037 6.62 6.62 0.00 3.42
142 143 9.362151 ACACTTCTCTCTATTAATTAGCTAGCT 57.638 33.333 23.12 23.12 0.00 3.32
161 162 9.046296 AGCTAGCTAACACAATATATGAAACAC 57.954 33.333 17.69 0.00 0.00 3.32
162 163 8.283291 GCTAGCTAACACAATATATGAAACACC 58.717 37.037 7.70 0.00 0.00 4.16
163 164 9.547753 CTAGCTAACACAATATATGAAACACCT 57.452 33.333 0.00 0.00 0.00 4.00
165 166 9.899661 AGCTAACACAATATATGAAACACCTAA 57.100 29.630 0.00 0.00 0.00 2.69
175 176 7.907841 ATATGAAACACCTAAATTAACCCCC 57.092 36.000 0.00 0.00 0.00 5.40
190 191 3.076350 CCCCCAAAACCCCTAAACC 57.924 57.895 0.00 0.00 0.00 3.27
191 192 0.191314 CCCCCAAAACCCCTAAACCA 59.809 55.000 0.00 0.00 0.00 3.67
192 193 1.344065 CCCCAAAACCCCTAAACCAC 58.656 55.000 0.00 0.00 0.00 4.16
193 194 1.344065 CCCAAAACCCCTAAACCACC 58.656 55.000 0.00 0.00 0.00 4.61
194 195 1.344065 CCAAAACCCCTAAACCACCC 58.656 55.000 0.00 0.00 0.00 4.61
195 196 1.344065 CAAAACCCCTAAACCACCCC 58.656 55.000 0.00 0.00 0.00 4.95
196 197 1.132977 CAAAACCCCTAAACCACCCCT 60.133 52.381 0.00 0.00 0.00 4.79
197 198 1.247260 AAACCCCTAAACCACCCCTT 58.753 50.000 0.00 0.00 0.00 3.95
198 199 1.247260 AACCCCTAAACCACCCCTTT 58.753 50.000 0.00 0.00 0.00 3.11
199 200 1.247260 ACCCCTAAACCACCCCTTTT 58.753 50.000 0.00 0.00 0.00 2.27
200 201 1.148446 ACCCCTAAACCACCCCTTTTC 59.852 52.381 0.00 0.00 0.00 2.29
201 202 1.148236 CCCCTAAACCACCCCTTTTCA 59.852 52.381 0.00 0.00 0.00 2.69
202 203 2.426561 CCCCTAAACCACCCCTTTTCAA 60.427 50.000 0.00 0.00 0.00 2.69
203 204 3.310193 CCCTAAACCACCCCTTTTCAAA 58.690 45.455 0.00 0.00 0.00 2.69
204 205 3.712218 CCCTAAACCACCCCTTTTCAAAA 59.288 43.478 0.00 0.00 0.00 2.44
205 206 4.164413 CCCTAAACCACCCCTTTTCAAAAA 59.836 41.667 0.00 0.00 0.00 1.94
225 226 2.592102 AAAAATCTCAGCTCCTGCCA 57.408 45.000 0.00 0.00 40.80 4.92
226 227 2.125773 AAAATCTCAGCTCCTGCCAG 57.874 50.000 0.00 0.00 40.80 4.85
227 228 0.990374 AAATCTCAGCTCCTGCCAGT 59.010 50.000 0.00 0.00 40.80 4.00
228 229 0.990374 AATCTCAGCTCCTGCCAGTT 59.010 50.000 0.00 0.00 40.80 3.16
229 230 0.252479 ATCTCAGCTCCTGCCAGTTG 59.748 55.000 0.00 0.00 40.80 3.16
230 231 2.033141 TCAGCTCCTGCCAGTTGC 59.967 61.111 0.00 0.00 40.80 4.17
231 232 2.033757 CAGCTCCTGCCAGTTGCT 59.966 61.111 3.32 3.32 42.00 3.91
232 233 2.033757 AGCTCCTGCCAGTTGCTG 59.966 61.111 7.71 0.00 42.00 4.41
233 234 2.033141 GCTCCTGCCAGTTGCTGA 59.967 61.111 0.00 0.00 41.11 4.26
234 235 2.331132 GCTCCTGCCAGTTGCTGAC 61.331 63.158 0.00 0.00 41.11 3.51
235 236 2.031012 TCCTGCCAGTTGCTGACG 59.969 61.111 0.00 0.00 41.11 4.35
236 237 3.730761 CCTGCCAGTTGCTGACGC 61.731 66.667 0.00 0.00 41.11 5.19
237 238 2.974148 CTGCCAGTTGCTGACGCA 60.974 61.111 0.00 0.00 46.24 5.24
241 242 1.672030 CCAGTTGCTGACGCATGGA 60.672 57.895 0.00 0.00 45.15 3.41
242 243 1.915614 CCAGTTGCTGACGCATGGAC 61.916 60.000 0.00 0.00 45.15 4.02
247 248 2.494445 CTGACGCATGGACGCCTA 59.506 61.111 0.00 0.00 36.19 3.93
248 249 1.068083 CTGACGCATGGACGCCTAT 59.932 57.895 0.00 0.00 36.19 2.57
249 250 0.530650 CTGACGCATGGACGCCTATT 60.531 55.000 0.00 0.00 36.19 1.73
250 251 0.809636 TGACGCATGGACGCCTATTG 60.810 55.000 0.00 0.00 36.19 1.90
251 252 1.498865 GACGCATGGACGCCTATTGG 61.499 60.000 0.00 0.00 36.19 3.16
252 253 1.523711 CGCATGGACGCCTATTGGT 60.524 57.895 0.00 0.00 35.27 3.67
253 254 1.498865 CGCATGGACGCCTATTGGTC 61.499 60.000 0.00 0.00 35.27 4.02
256 257 2.108362 GGACGCCTATTGGTCCCG 59.892 66.667 0.00 0.00 45.59 5.14
257 258 2.108362 GACGCCTATTGGTCCCGG 59.892 66.667 0.00 0.00 35.27 5.73
258 259 2.686106 ACGCCTATTGGTCCCGGT 60.686 61.111 0.00 0.00 35.27 5.28
259 260 2.248086 GACGCCTATTGGTCCCGGTT 62.248 60.000 0.00 0.00 35.27 4.44
260 261 1.817941 CGCCTATTGGTCCCGGTTG 60.818 63.158 0.00 0.00 35.27 3.77
261 262 1.605453 GCCTATTGGTCCCGGTTGA 59.395 57.895 0.00 0.00 35.27 3.18
262 263 0.182775 GCCTATTGGTCCCGGTTGAT 59.817 55.000 0.00 0.00 35.27 2.57
263 264 1.967319 CCTATTGGTCCCGGTTGATG 58.033 55.000 0.00 0.00 0.00 3.07
264 265 1.308998 CTATTGGTCCCGGTTGATGC 58.691 55.000 0.00 0.00 0.00 3.91
265 266 0.106918 TATTGGTCCCGGTTGATGCC 60.107 55.000 0.00 0.00 0.00 4.40
266 267 2.148723 ATTGGTCCCGGTTGATGCCA 62.149 55.000 0.00 0.00 0.00 4.92
267 268 2.750237 GGTCCCGGTTGATGCCAC 60.750 66.667 0.00 0.00 0.00 5.01
268 269 2.750237 GTCCCGGTTGATGCCACC 60.750 66.667 0.00 0.00 0.00 4.61
269 270 3.253061 TCCCGGTTGATGCCACCA 61.253 61.111 0.00 0.00 0.00 4.17
270 271 2.282816 CCCGGTTGATGCCACCAA 60.283 61.111 0.00 0.00 0.00 3.67
271 272 2.635443 CCCGGTTGATGCCACCAAC 61.635 63.158 0.00 0.00 42.18 3.77
274 275 2.961768 GTTGATGCCACCAACCGG 59.038 61.111 0.00 0.00 38.28 5.28
275 276 2.282816 TTGATGCCACCAACCGGG 60.283 61.111 6.32 0.00 44.81 5.73
276 277 2.835049 TTGATGCCACCAACCGGGA 61.835 57.895 6.32 0.00 41.15 5.14
277 278 2.750237 GATGCCACCAACCGGGAC 60.750 66.667 6.32 0.00 41.15 4.46
278 279 4.360405 ATGCCACCAACCGGGACC 62.360 66.667 6.32 0.00 41.15 4.46
280 281 4.589675 GCCACCAACCGGGACCAA 62.590 66.667 6.32 0.00 41.15 3.67
281 282 2.196229 CCACCAACCGGGACCAAA 59.804 61.111 6.32 0.00 41.15 3.28
282 283 1.901464 CCACCAACCGGGACCAAAG 60.901 63.158 6.32 0.00 41.15 2.77
283 284 1.901464 CACCAACCGGGACCAAAGG 60.901 63.158 6.32 0.00 41.15 3.11
284 285 2.282887 CCAACCGGGACCAAAGGG 60.283 66.667 6.32 0.00 40.01 3.95
285 286 2.989253 CAACCGGGACCAAAGGGC 60.989 66.667 6.32 0.00 37.90 5.19
292 293 2.361737 GACCAAAGGGCCTCCTGC 60.362 66.667 6.46 0.00 44.07 4.85
328 329 3.402681 CCACGTGGAGGCCCATCT 61.403 66.667 31.31 0.00 45.68 2.90
329 330 2.124983 CACGTGGAGGCCCATCTG 60.125 66.667 7.95 0.00 45.68 2.90
330 331 2.607750 ACGTGGAGGCCCATCTGT 60.608 61.111 0.00 0.00 45.68 3.41
331 332 2.187946 CGTGGAGGCCCATCTGTC 59.812 66.667 0.00 0.00 45.68 3.51
332 333 2.592308 GTGGAGGCCCATCTGTCC 59.408 66.667 0.00 0.00 45.68 4.02
333 334 2.692368 TGGAGGCCCATCTGTCCC 60.692 66.667 0.00 0.00 37.58 4.46
334 335 3.866582 GGAGGCCCATCTGTCCCG 61.867 72.222 0.00 0.00 0.00 5.14
335 336 3.866582 GAGGCCCATCTGTCCCGG 61.867 72.222 0.00 0.00 0.00 5.73
336 337 4.741239 AGGCCCATCTGTCCCGGT 62.741 66.667 0.00 0.00 0.00 5.28
337 338 3.728373 GGCCCATCTGTCCCGGTT 61.728 66.667 0.00 0.00 0.00 4.44
338 339 2.124695 GCCCATCTGTCCCGGTTC 60.125 66.667 0.00 0.00 0.00 3.62
339 340 2.186903 CCCATCTGTCCCGGTTCG 59.813 66.667 0.00 0.00 0.00 3.95
340 341 2.656069 CCCATCTGTCCCGGTTCGT 61.656 63.158 0.00 0.00 0.00 3.85
341 342 1.447838 CCATCTGTCCCGGTTCGTG 60.448 63.158 0.00 0.00 0.00 4.35
342 343 1.292223 CATCTGTCCCGGTTCGTGT 59.708 57.895 0.00 0.00 0.00 4.49
343 344 0.528924 CATCTGTCCCGGTTCGTGTA 59.471 55.000 0.00 0.00 0.00 2.90
344 345 1.067425 CATCTGTCCCGGTTCGTGTAA 60.067 52.381 0.00 0.00 0.00 2.41
345 346 0.599558 TCTGTCCCGGTTCGTGTAAG 59.400 55.000 0.00 0.00 0.00 2.34
346 347 0.599558 CTGTCCCGGTTCGTGTAAGA 59.400 55.000 0.00 0.00 0.00 2.10
347 348 1.000060 CTGTCCCGGTTCGTGTAAGAA 60.000 52.381 0.00 0.00 0.00 2.52
355 356 2.747436 GTTCGTGTAAGAACCGGAACT 58.253 47.619 9.46 3.47 43.33 3.01
356 357 3.900941 GTTCGTGTAAGAACCGGAACTA 58.099 45.455 9.46 0.00 43.33 2.24
357 358 4.298332 GTTCGTGTAAGAACCGGAACTAA 58.702 43.478 9.46 0.00 43.33 2.24
358 359 4.582701 TCGTGTAAGAACCGGAACTAAA 57.417 40.909 9.46 0.00 0.00 1.85
359 360 4.549458 TCGTGTAAGAACCGGAACTAAAG 58.451 43.478 9.46 0.00 0.00 1.85
360 361 3.676646 CGTGTAAGAACCGGAACTAAAGG 59.323 47.826 9.46 0.00 0.00 3.11
361 362 3.434641 GTGTAAGAACCGGAACTAAAGGC 59.565 47.826 9.46 0.00 0.00 4.35
362 363 2.195741 AAGAACCGGAACTAAAGGCC 57.804 50.000 9.46 0.00 0.00 5.19
363 364 1.359168 AGAACCGGAACTAAAGGCCT 58.641 50.000 9.46 0.00 0.00 5.19
364 365 2.543635 AGAACCGGAACTAAAGGCCTA 58.456 47.619 9.46 0.00 0.00 3.93
365 366 2.500504 AGAACCGGAACTAAAGGCCTAG 59.499 50.000 9.46 2.46 0.00 3.02
366 367 1.201424 ACCGGAACTAAAGGCCTAGG 58.799 55.000 9.46 3.67 0.00 3.02
367 368 0.468648 CCGGAACTAAAGGCCTAGGG 59.531 60.000 5.16 0.76 0.00 3.53
380 381 2.819115 GCCTAGGGCTTTAGTAACGAC 58.181 52.381 11.72 0.00 46.69 4.34
381 382 2.482664 GCCTAGGGCTTTAGTAACGACC 60.483 54.545 11.72 2.95 46.69 4.79
382 383 2.102084 CCTAGGGCTTTAGTAACGACCC 59.898 54.545 7.64 8.73 37.63 4.46
383 384 1.948391 AGGGCTTTAGTAACGACCCT 58.052 50.000 7.64 10.62 42.97 4.34
384 385 2.263545 AGGGCTTTAGTAACGACCCTT 58.736 47.619 7.64 0.00 45.55 3.95
385 386 2.641321 AGGGCTTTAGTAACGACCCTTT 59.359 45.455 7.64 0.00 45.55 3.11
386 387 3.840078 AGGGCTTTAGTAACGACCCTTTA 59.160 43.478 7.64 0.00 45.55 1.85
387 388 4.081254 AGGGCTTTAGTAACGACCCTTTAG 60.081 45.833 7.64 0.00 45.55 1.85
388 389 4.323028 GGGCTTTAGTAACGACCCTTTAGT 60.323 45.833 0.00 0.00 34.34 2.24
389 390 4.867047 GGCTTTAGTAACGACCCTTTAGTC 59.133 45.833 0.00 0.00 0.00 2.59
390 391 4.867047 GCTTTAGTAACGACCCTTTAGTCC 59.133 45.833 0.00 0.00 32.91 3.85
391 392 5.405935 TTTAGTAACGACCCTTTAGTCCC 57.594 43.478 0.00 0.00 32.91 4.46
392 393 1.821136 AGTAACGACCCTTTAGTCCCG 59.179 52.381 0.00 0.00 32.91 5.14
393 394 1.134995 GTAACGACCCTTTAGTCCCGG 60.135 57.143 0.00 0.00 32.91 5.73
394 395 0.833409 AACGACCCTTTAGTCCCGGT 60.833 55.000 0.00 0.00 32.91 5.28
395 396 0.833409 ACGACCCTTTAGTCCCGGTT 60.833 55.000 0.00 0.00 32.91 4.44
396 397 0.108472 CGACCCTTTAGTCCCGGTTC 60.108 60.000 0.00 0.00 32.91 3.62
397 398 0.978907 GACCCTTTAGTCCCGGTTCA 59.021 55.000 0.00 0.00 0.00 3.18
398 399 1.348696 GACCCTTTAGTCCCGGTTCAA 59.651 52.381 0.00 0.00 0.00 2.69
399 400 1.990327 ACCCTTTAGTCCCGGTTCAAT 59.010 47.619 0.00 0.00 0.00 2.57
400 401 3.183801 ACCCTTTAGTCCCGGTTCAATA 58.816 45.455 0.00 0.00 0.00 1.90
401 402 3.588396 ACCCTTTAGTCCCGGTTCAATAA 59.412 43.478 0.00 0.00 0.00 1.40
402 403 3.943381 CCCTTTAGTCCCGGTTCAATAAC 59.057 47.826 0.00 0.00 34.66 1.89
413 414 4.104696 GGTTCAATAACCGGGACAAATG 57.895 45.455 6.32 0.00 45.61 2.32
414 415 3.119280 GGTTCAATAACCGGGACAAATGG 60.119 47.826 6.32 0.00 45.61 3.16
415 416 2.096248 TCAATAACCGGGACAAATGGC 58.904 47.619 6.32 0.00 0.00 4.40
416 417 1.136110 CAATAACCGGGACAAATGGCC 59.864 52.381 6.32 0.00 44.61 5.36
417 418 0.629058 ATAACCGGGACAAATGGCCT 59.371 50.000 6.32 0.00 44.77 5.19
418 419 0.406361 TAACCGGGACAAATGGCCTT 59.594 50.000 6.32 0.00 44.77 4.35
419 420 0.471022 AACCGGGACAAATGGCCTTT 60.471 50.000 6.32 0.00 44.77 3.11
420 421 0.471022 ACCGGGACAAATGGCCTTTT 60.471 50.000 10.72 10.72 44.77 2.27
421 422 0.684535 CCGGGACAAATGGCCTTTTT 59.315 50.000 13.68 6.17 44.77 1.94
422 423 1.337728 CCGGGACAAATGGCCTTTTTC 60.338 52.381 13.68 13.44 44.77 2.29
423 424 1.618343 CGGGACAAATGGCCTTTTTCT 59.382 47.619 13.68 2.66 44.77 2.52
424 425 2.823154 CGGGACAAATGGCCTTTTTCTA 59.177 45.455 13.68 0.00 44.77 2.10
425 426 3.366985 CGGGACAAATGGCCTTTTTCTAC 60.367 47.826 13.68 3.49 44.77 2.59
426 427 3.832490 GGGACAAATGGCCTTTTTCTACT 59.168 43.478 13.68 0.00 44.77 2.57
427 428 5.014202 GGGACAAATGGCCTTTTTCTACTA 58.986 41.667 13.68 0.00 44.77 1.82
428 429 5.125578 GGGACAAATGGCCTTTTTCTACTAG 59.874 44.000 13.68 4.20 44.77 2.57
429 430 5.710567 GGACAAATGGCCTTTTTCTACTAGT 59.289 40.000 13.68 7.20 41.12 2.57
430 431 6.349363 GGACAAATGGCCTTTTTCTACTAGTG 60.349 42.308 13.68 3.51 41.12 2.74
500 505 0.327924 TGGGTGAAATCTGCCGATGT 59.672 50.000 0.00 0.00 0.00 3.06
502 507 2.026729 TGGGTGAAATCTGCCGATGTTA 60.027 45.455 0.00 0.00 0.00 2.41
543 557 7.745620 AGATACCTGGTAAACAAAACAAGAG 57.254 36.000 11.17 0.00 0.00 2.85
544 558 7.514721 AGATACCTGGTAAACAAAACAAGAGA 58.485 34.615 11.17 0.00 0.00 3.10
545 559 7.661847 AGATACCTGGTAAACAAAACAAGAGAG 59.338 37.037 11.17 0.00 0.00 3.20
546 560 5.506708 ACCTGGTAAACAAAACAAGAGAGT 58.493 37.500 0.00 0.00 0.00 3.24
581 595 2.991250 TCTTAAAGCATGCCAGGAGAC 58.009 47.619 15.66 0.00 0.00 3.36
597 611 2.639065 GAGACTGTTGTGTTGGTCCAA 58.361 47.619 0.00 0.00 0.00 3.53
615 631 2.400399 CAAAGCACTGTGATTGCAAGG 58.600 47.619 12.49 0.00 42.83 3.61
625 642 5.716228 ACTGTGATTGCAAGGAATTATGGAA 59.284 36.000 4.94 0.00 0.00 3.53
714 731 2.361119 CACAATGAGATTGGCCATGGAG 59.639 50.000 18.40 0.00 44.42 3.86
731 748 5.652014 CCATGGAGGTTTTCTTAGTTGCATA 59.348 40.000 5.56 0.00 0.00 3.14
736 753 5.501156 AGGTTTTCTTAGTTGCATAGGAGG 58.499 41.667 0.00 0.00 0.00 4.30
776 793 3.391965 CTTTTGCTGCCATGCTTGTAAA 58.608 40.909 0.00 0.00 0.00 2.01
777 794 6.133660 GCTTTTGCTGCCATGCTTGTAAAG 62.134 45.833 0.00 0.00 44.79 1.85
820 837 5.586243 TGATTATGAGGTAGCTCTTTGTTGC 59.414 40.000 21.80 7.06 0.00 4.17
862 880 6.546395 CAGTTGCATTGGTATACTGACTTTC 58.454 40.000 6.60 0.00 38.74 2.62
950 991 6.016024 TGTCTGCAAGCAATTTGTAAGAATCT 60.016 34.615 0.00 0.00 39.08 2.40
1109 1158 4.454728 TCTTTATGGTTGCAATGCTTCC 57.545 40.909 6.82 9.39 0.00 3.46
1113 1162 2.877097 TGGTTGCAATGCTTCCTCTA 57.123 45.000 6.82 0.00 0.00 2.43
1161 1210 3.519579 CTGGAAGCATGTAGACAGTGAG 58.480 50.000 0.00 0.00 0.00 3.51
1183 1232 9.050601 GTGAGAAAATTCTAGATATCTTGTGGG 57.949 37.037 11.25 0.00 37.73 4.61
1258 1315 6.070481 GGTTCCTTCTTCTTCAGATTCCTACT 60.070 42.308 0.00 0.00 0.00 2.57
1259 1316 6.783708 TCCTTCTTCTTCAGATTCCTACTC 57.216 41.667 0.00 0.00 0.00 2.59
1269 1326 6.961360 TCAGATTCCTACTCATATGAACGT 57.039 37.500 6.90 4.92 0.00 3.99
1277 1334 7.002276 TCCTACTCATATGAACGTCCTTATCA 58.998 38.462 6.90 0.00 0.00 2.15
1405 1462 8.293157 GCTATCTTGTTTGCTTCTAGAGTTTTT 58.707 33.333 0.00 0.00 0.00 1.94
1540 1597 0.391263 GGTCGTAAACTCTGCCTGGG 60.391 60.000 0.00 0.00 0.00 4.45
1640 1697 7.255451 GGTCTCAATATGAAAGTGGAACAACAA 60.255 37.037 0.00 0.00 44.16 2.83
1895 1958 9.918630 AAGATAACTTGTTCTTTCATCATTTGG 57.081 29.630 0.00 0.00 34.80 3.28
1903 1966 4.401022 TCTTTCATCATTTGGTCTGCTGT 58.599 39.130 0.00 0.00 0.00 4.40
1907 1970 3.890756 TCATCATTTGGTCTGCTGTGTTT 59.109 39.130 0.00 0.00 0.00 2.83
1916 1979 4.065088 GGTCTGCTGTGTTTTGACTATGA 58.935 43.478 0.00 0.00 0.00 2.15
1919 1982 6.371548 GGTCTGCTGTGTTTTGACTATGAATA 59.628 38.462 0.00 0.00 0.00 1.75
1921 1984 8.454106 GTCTGCTGTGTTTTGACTATGAATAAT 58.546 33.333 0.00 0.00 0.00 1.28
1922 1985 8.453320 TCTGCTGTGTTTTGACTATGAATAATG 58.547 33.333 0.00 0.00 0.00 1.90
1923 1986 8.109705 TGCTGTGTTTTGACTATGAATAATGT 57.890 30.769 0.00 0.00 0.00 2.71
1924 1987 9.225436 TGCTGTGTTTTGACTATGAATAATGTA 57.775 29.630 0.00 0.00 0.00 2.29
2289 2389 4.260170 GTGCTTCATCAGTGGATCTTCTT 58.740 43.478 0.00 0.00 0.00 2.52
2466 2568 1.335496 TGGTTGCGACTTAAAGGTTGC 59.665 47.619 3.59 1.05 44.44 4.17
2469 2571 2.809696 GTTGCGACTTAAAGGTTGCCTA 59.190 45.455 0.00 0.00 43.78 3.93
2471 2573 3.006940 TGCGACTTAAAGGTTGCCTATG 58.993 45.455 4.99 0.00 43.78 2.23
2487 2589 6.698008 TGCCTATGATTCTTGTGGTATTTG 57.302 37.500 0.00 0.00 0.00 2.32
2661 2980 1.730064 CAATGGACAACCGGTCTTACG 59.270 52.381 8.04 0.00 46.16 3.18
2796 3123 8.983702 ACAGTAAAAACTAAATGTCAGGGTTA 57.016 30.769 0.00 0.00 0.00 2.85
2814 3142 4.504340 GGGTTAGTTCAACTACCAGAAGCA 60.504 45.833 14.49 0.00 37.30 3.91
2835 3196 6.940739 AGCAGTGATTCTCTAGCTTAGAAAA 58.059 36.000 13.38 4.85 36.60 2.29
2858 3219 3.243737 CCTTTACAAGTCAGGGCCAAAAC 60.244 47.826 6.18 0.00 0.00 2.43
2913 3274 5.006386 AGAACCAAGAATTAGCAACTGAGG 58.994 41.667 0.00 0.00 0.00 3.86
2928 3291 5.405873 GCAACTGAGGTTACTGAACTACTTC 59.594 44.000 0.00 0.00 35.74 3.01
2949 3312 6.319911 ACTTCTAGATTTATTGGGCTTGAAGC 59.680 38.462 9.04 9.04 41.00 3.86
3083 3446 5.244626 ACCAAGAATAGTTTGCATCAGCTTT 59.755 36.000 0.00 0.00 42.74 3.51
3092 3455 9.956720 ATAGTTTGCATCAGCTTTTTATATCAC 57.043 29.630 0.00 0.00 42.74 3.06
3244 3696 0.466372 TCGAGTCGGAGATCATGGCT 60.466 55.000 13.54 0.00 40.67 4.75
3457 3909 2.362503 ACCCTCGAGCACATCCGA 60.363 61.111 6.99 0.00 0.00 4.55
3498 3950 5.334337 CGTTTTGAGAATGTCAGAGATGCAA 60.334 40.000 0.00 0.00 36.21 4.08
3683 4145 2.084546 GCCCTGACCAATCTGTTGTAC 58.915 52.381 0.00 0.00 33.36 2.90
3694 4156 5.363868 CCAATCTGTTGTACTGAGGGAGATA 59.636 44.000 0.00 0.00 33.36 1.98
3789 4273 3.768632 CGAGGCCTCGTCTTTTCG 58.231 61.111 40.77 18.92 46.99 3.46
3794 4278 0.942252 GGCCTCGTCTTTTCGTTTGT 59.058 50.000 0.00 0.00 0.00 2.83
3832 4316 6.363577 ACATCTATCTTGTAATGGTTTGCG 57.636 37.500 0.00 0.00 0.00 4.85
3833 4317 6.112734 ACATCTATCTTGTAATGGTTTGCGA 58.887 36.000 0.00 0.00 0.00 5.10
3834 4318 6.767902 ACATCTATCTTGTAATGGTTTGCGAT 59.232 34.615 0.00 0.00 0.00 4.58
3837 4321 8.138365 TCTATCTTGTAATGGTTTGCGATTAC 57.862 34.615 0.00 0.00 42.69 1.89
3838 4322 6.751514 ATCTTGTAATGGTTTGCGATTACA 57.248 33.333 9.86 9.86 46.83 2.41
3975 4558 2.565841 GTCACCTGCCAATGTCCTATC 58.434 52.381 0.00 0.00 0.00 2.08
4069 4653 5.391310 CGATTCTGCAATCTTAGCAACAACT 60.391 40.000 0.00 0.00 42.17 3.16
4074 4663 4.229876 GCAATCTTAGCAACAACTGGAAC 58.770 43.478 0.00 0.00 0.00 3.62
4075 4664 4.261572 GCAATCTTAGCAACAACTGGAACA 60.262 41.667 0.00 0.00 0.00 3.18
4175 6671 9.165035 ACTACTAGTAGTTGATTGACACTACTC 57.835 37.037 26.61 0.00 43.35 2.59
4176 6672 7.997773 ACTAGTAGTTGATTGACACTACTCA 57.002 36.000 13.85 3.17 40.37 3.41
4244 6742 4.227197 TGGACCTCTATTCCTCCTCATTC 58.773 47.826 0.00 0.00 33.84 2.67
4305 6803 3.815856 TCCATTGCTGAGAGTGAGATC 57.184 47.619 0.00 0.00 0.00 2.75
4318 6816 9.234827 CTGAGAGTGAGATCTGTAGATGAATAT 57.765 37.037 0.00 0.00 34.37 1.28
4375 6873 5.906113 TTGTTACACACAAATGGTTGAGT 57.094 34.783 0.00 0.00 42.76 3.41
4376 6874 5.493133 TGTTACACACAAATGGTTGAGTC 57.507 39.130 0.00 0.00 36.55 3.36
4377 6875 4.944317 TGTTACACACAAATGGTTGAGTCA 59.056 37.500 0.00 0.00 36.55 3.41
4381 6879 4.036734 ACACACAAATGGTTGAGTCATGAC 59.963 41.667 18.47 18.47 36.55 3.06
4403 6909 4.648762 ACTCATGAGACCAGGAATAGACAG 59.351 45.833 29.27 0.00 32.24 3.51
4404 6910 4.614475 TCATGAGACCAGGAATAGACAGT 58.386 43.478 0.00 0.00 29.21 3.55
4445 6951 6.341316 ACAAGCTCACACGAATAGAATACAT 58.659 36.000 0.00 0.00 0.00 2.29
4468 6974 9.019764 ACATACAATATTTGAAAGCATTAACGC 57.980 29.630 0.00 0.00 0.00 4.84
4469 6975 6.553255 ACAATATTTGAAAGCATTAACGCG 57.447 33.333 3.53 3.53 36.85 6.01
4501 7007 3.091417 GCGCAATTCAATCTTACGACAC 58.909 45.455 0.30 0.00 0.00 3.67
4503 7009 3.060230 CGCAATTCAATCTTACGACACGA 59.940 43.478 0.00 0.00 0.00 4.35
4504 7010 4.569029 GCAATTCAATCTTACGACACGAG 58.431 43.478 0.00 0.00 0.00 4.18
4505 7011 4.569029 CAATTCAATCTTACGACACGAGC 58.431 43.478 0.00 0.00 0.00 5.03
4506 7012 3.570926 TTCAATCTTACGACACGAGCT 57.429 42.857 0.00 0.00 0.00 4.09
4525 7031 3.691609 AGCTAGCAAGTGCCTTGTTATTC 59.308 43.478 18.83 8.72 42.77 1.75
4533 7039 2.227865 GTGCCTTGTTATTCGAAAGCCA 59.772 45.455 0.00 0.00 0.00 4.75
4539 7045 6.616947 CCTTGTTATTCGAAAGCCATAAACA 58.383 36.000 0.00 2.26 0.00 2.83
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 6.458210 AGATCGTCATGAACATATGCATACA 58.542 36.000 8.99 2.70 0.00 2.29
2 3 7.330208 CAGAAGATCGTCATGAACATATGCATA 59.670 37.037 9.27 9.27 0.00 3.14
4 5 5.464389 CAGAAGATCGTCATGAACATATGCA 59.536 40.000 11.35 0.00 0.00 3.96
5 6 5.464722 ACAGAAGATCGTCATGAACATATGC 59.535 40.000 11.35 0.00 0.00 3.14
6 7 7.474398 AACAGAAGATCGTCATGAACATATG 57.526 36.000 11.35 0.00 0.00 1.78
7 8 7.225538 GGAAACAGAAGATCGTCATGAACATAT 59.774 37.037 11.35 0.00 0.00 1.78
8 9 6.535150 GGAAACAGAAGATCGTCATGAACATA 59.465 38.462 11.35 0.00 0.00 2.29
9 10 5.352569 GGAAACAGAAGATCGTCATGAACAT 59.647 40.000 11.35 0.00 0.00 2.71
10 11 4.690748 GGAAACAGAAGATCGTCATGAACA 59.309 41.667 11.35 0.00 0.00 3.18
11 12 4.932200 AGGAAACAGAAGATCGTCATGAAC 59.068 41.667 11.35 0.06 0.00 3.18
12 13 5.152623 AGGAAACAGAAGATCGTCATGAA 57.847 39.130 11.35 0.00 0.00 2.57
13 14 4.808414 AGGAAACAGAAGATCGTCATGA 57.192 40.909 11.35 0.00 0.00 3.07
14 15 4.931601 TGAAGGAAACAGAAGATCGTCATG 59.068 41.667 11.35 8.56 0.00 3.07
15 16 5.152623 TGAAGGAAACAGAAGATCGTCAT 57.847 39.130 11.35 0.00 0.00 3.06
16 17 4.600692 TGAAGGAAACAGAAGATCGTCA 57.399 40.909 11.35 0.00 0.00 4.35
17 18 6.310197 CAAATGAAGGAAACAGAAGATCGTC 58.690 40.000 0.00 0.00 0.00 4.20
18 19 5.335191 GCAAATGAAGGAAACAGAAGATCGT 60.335 40.000 0.00 0.00 0.00 3.73
19 20 5.091431 GCAAATGAAGGAAACAGAAGATCG 58.909 41.667 0.00 0.00 0.00 3.69
20 21 6.264841 AGCAAATGAAGGAAACAGAAGATC 57.735 37.500 0.00 0.00 0.00 2.75
21 22 6.661304 AAGCAAATGAAGGAAACAGAAGAT 57.339 33.333 0.00 0.00 0.00 2.40
22 23 6.772716 AGTAAGCAAATGAAGGAAACAGAAGA 59.227 34.615 0.00 0.00 0.00 2.87
23 24 6.974965 AGTAAGCAAATGAAGGAAACAGAAG 58.025 36.000 0.00 0.00 0.00 2.85
24 25 6.959639 AGTAAGCAAATGAAGGAAACAGAA 57.040 33.333 0.00 0.00 0.00 3.02
25 26 7.672983 CTAGTAAGCAAATGAAGGAAACAGA 57.327 36.000 0.00 0.00 0.00 3.41
42 43 2.608546 ACTCGACACGCTAGCTAGTAAG 59.391 50.000 21.62 15.18 0.00 2.34
43 44 2.606725 GACTCGACACGCTAGCTAGTAA 59.393 50.000 21.62 2.57 0.00 2.24
44 45 2.200067 GACTCGACACGCTAGCTAGTA 58.800 52.381 21.62 0.00 0.00 1.82
45 46 1.008329 GACTCGACACGCTAGCTAGT 58.992 55.000 21.62 10.90 0.00 2.57
46 47 0.305313 GGACTCGACACGCTAGCTAG 59.695 60.000 16.84 16.84 0.00 3.42
47 48 0.107800 AGGACTCGACACGCTAGCTA 60.108 55.000 13.93 0.00 0.00 3.32
48 49 1.370587 GAGGACTCGACACGCTAGCT 61.371 60.000 13.93 0.00 0.00 3.32
49 50 1.062845 GAGGACTCGACACGCTAGC 59.937 63.158 4.06 4.06 0.00 3.42
50 51 0.653636 GAGAGGACTCGACACGCTAG 59.346 60.000 0.00 0.00 33.32 3.42
51 52 0.249676 AGAGAGGACTCGACACGCTA 59.750 55.000 0.00 0.00 46.64 4.26
52 53 0.249676 TAGAGAGGACTCGACACGCT 59.750 55.000 0.00 0.00 46.64 5.07
53 54 1.301423 ATAGAGAGGACTCGACACGC 58.699 55.000 0.00 0.00 46.64 5.34
54 55 2.472115 CGTATAGAGAGGACTCGACACG 59.528 54.545 0.00 0.00 46.64 4.49
55 56 3.456280 ACGTATAGAGAGGACTCGACAC 58.544 50.000 0.00 0.00 46.64 3.67
56 57 3.815856 ACGTATAGAGAGGACTCGACA 57.184 47.619 0.00 0.00 46.64 4.35
57 58 6.620678 ACTATACGTATAGAGAGGACTCGAC 58.379 44.000 37.25 0.00 46.64 4.20
58 59 6.832520 ACTATACGTATAGAGAGGACTCGA 57.167 41.667 37.25 7.49 46.64 4.04
59 60 7.148086 ACCTACTATACGTATAGAGAGGACTCG 60.148 44.444 39.44 26.99 46.64 4.18
60 61 8.066612 ACCTACTATACGTATAGAGAGGACTC 57.933 42.308 39.44 0.00 40.90 3.36
61 62 9.189156 CTACCTACTATACGTATAGAGAGGACT 57.811 40.741 39.44 30.44 40.90 3.85
62 63 7.920682 GCTACCTACTATACGTATAGAGAGGAC 59.079 44.444 39.44 31.07 40.90 3.85
63 64 7.201776 CGCTACCTACTATACGTATAGAGAGGA 60.202 44.444 39.44 30.08 40.90 3.71
64 65 6.917477 CGCTACCTACTATACGTATAGAGAGG 59.083 46.154 35.82 35.82 42.30 3.69
65 66 7.479980 ACGCTACCTACTATACGTATAGAGAG 58.520 42.308 37.25 30.82 38.30 3.20
66 67 7.397892 ACGCTACCTACTATACGTATAGAGA 57.602 40.000 37.25 25.93 38.30 3.10
67 68 6.413526 CGACGCTACCTACTATACGTATAGAG 59.586 46.154 37.25 28.79 38.30 2.43
68 69 6.093633 TCGACGCTACCTACTATACGTATAGA 59.906 42.308 37.25 23.69 38.30 1.98
69 70 6.195613 GTCGACGCTACCTACTATACGTATAG 59.804 46.154 31.75 31.75 41.08 1.31
70 71 6.028368 GTCGACGCTACCTACTATACGTATA 58.972 44.000 14.39 14.39 33.31 1.47
71 72 4.859798 GTCGACGCTACCTACTATACGTAT 59.140 45.833 13.54 13.54 33.31 3.06
72 73 4.227538 GTCGACGCTACCTACTATACGTA 58.772 47.826 0.00 0.00 33.31 3.57
73 74 3.053455 GTCGACGCTACCTACTATACGT 58.947 50.000 0.00 0.00 36.30 3.57
74 75 2.410053 GGTCGACGCTACCTACTATACG 59.590 54.545 9.92 0.00 33.97 3.06
75 76 3.393800 TGGTCGACGCTACCTACTATAC 58.606 50.000 9.92 0.00 37.91 1.47
76 77 3.751479 TGGTCGACGCTACCTACTATA 57.249 47.619 9.92 0.00 37.91 1.31
77 78 2.627515 TGGTCGACGCTACCTACTAT 57.372 50.000 9.92 0.00 37.91 2.12
78 79 2.283298 CTTGGTCGACGCTACCTACTA 58.717 52.381 9.92 0.00 37.91 1.82
79 80 1.093159 CTTGGTCGACGCTACCTACT 58.907 55.000 9.92 0.00 37.91 2.57
80 81 0.525029 GCTTGGTCGACGCTACCTAC 60.525 60.000 9.92 0.00 37.91 3.18
81 82 0.961857 TGCTTGGTCGACGCTACCTA 60.962 55.000 9.92 0.00 37.91 3.08
82 83 2.273179 TGCTTGGTCGACGCTACCT 61.273 57.895 9.92 0.00 37.91 3.08
83 84 2.092882 GTGCTTGGTCGACGCTACC 61.093 63.158 9.92 0.00 37.53 3.18
84 85 1.344942 CTGTGCTTGGTCGACGCTAC 61.345 60.000 9.92 8.96 0.00 3.58
85 86 1.080772 CTGTGCTTGGTCGACGCTA 60.081 57.895 9.92 0.00 0.00 4.26
86 87 2.356313 CTGTGCTTGGTCGACGCT 60.356 61.111 9.92 0.00 0.00 5.07
87 88 2.355837 TCTGTGCTTGGTCGACGC 60.356 61.111 9.92 8.25 0.00 5.19
88 89 0.109086 ATCTCTGTGCTTGGTCGACG 60.109 55.000 9.92 0.00 0.00 5.12
89 90 2.941453 TATCTCTGTGCTTGGTCGAC 57.059 50.000 7.13 7.13 0.00 4.20
90 91 3.089284 TCTTATCTCTGTGCTTGGTCGA 58.911 45.455 0.00 0.00 0.00 4.20
91 92 3.129462 TCTCTTATCTCTGTGCTTGGTCG 59.871 47.826 0.00 0.00 0.00 4.79
92 93 4.441356 CCTCTCTTATCTCTGTGCTTGGTC 60.441 50.000 0.00 0.00 0.00 4.02
93 94 3.450457 CCTCTCTTATCTCTGTGCTTGGT 59.550 47.826 0.00 0.00 0.00 3.67
94 95 3.703556 TCCTCTCTTATCTCTGTGCTTGG 59.296 47.826 0.00 0.00 0.00 3.61
95 96 4.159321 TGTCCTCTCTTATCTCTGTGCTTG 59.841 45.833 0.00 0.00 0.00 4.01
96 97 4.159506 GTGTCCTCTCTTATCTCTGTGCTT 59.840 45.833 0.00 0.00 0.00 3.91
97 98 3.699038 GTGTCCTCTCTTATCTCTGTGCT 59.301 47.826 0.00 0.00 0.00 4.40
98 99 3.699038 AGTGTCCTCTCTTATCTCTGTGC 59.301 47.826 0.00 0.00 0.00 4.57
99 100 5.652014 AGAAGTGTCCTCTCTTATCTCTGTG 59.348 44.000 0.00 0.00 0.00 3.66
100 101 5.826643 AGAAGTGTCCTCTCTTATCTCTGT 58.173 41.667 0.00 0.00 0.00 3.41
101 102 6.122277 AGAGAAGTGTCCTCTCTTATCTCTG 58.878 44.000 0.00 0.00 39.76 3.35
102 103 6.327386 AGAGAAGTGTCCTCTCTTATCTCT 57.673 41.667 0.00 0.00 39.76 3.10
111 112 8.856103 GCTAATTAATAGAGAGAAGTGTCCTCT 58.144 37.037 0.00 0.00 43.16 3.69
112 113 8.856103 AGCTAATTAATAGAGAGAAGTGTCCTC 58.144 37.037 0.00 0.00 33.04 3.71
113 114 8.776061 AGCTAATTAATAGAGAGAAGTGTCCT 57.224 34.615 0.00 0.00 33.04 3.85
115 116 9.620660 GCTAGCTAATTAATAGAGAGAAGTGTC 57.379 37.037 7.70 0.00 33.04 3.67
116 117 9.362151 AGCTAGCTAATTAATAGAGAGAAGTGT 57.638 33.333 17.69 0.00 33.04 3.55
135 136 9.046296 GTGTTTCATATATTGTGTTAGCTAGCT 57.954 33.333 23.12 23.12 0.00 3.32
136 137 8.283291 GGTGTTTCATATATTGTGTTAGCTAGC 58.717 37.037 6.62 6.62 0.00 3.42
137 138 9.547753 AGGTGTTTCATATATTGTGTTAGCTAG 57.452 33.333 0.00 0.00 0.00 3.42
139 140 9.899661 TTAGGTGTTTCATATATTGTGTTAGCT 57.100 29.630 0.00 0.00 0.00 3.32
149 150 9.596308 GGGGGTTAATTTAGGTGTTTCATATAT 57.404 33.333 0.00 0.00 0.00 0.86
150 151 8.999905 GGGGGTTAATTTAGGTGTTTCATATA 57.000 34.615 0.00 0.00 0.00 0.86
151 152 7.907841 GGGGGTTAATTTAGGTGTTTCATAT 57.092 36.000 0.00 0.00 0.00 1.78
172 173 0.191314 TGGTTTAGGGGTTTTGGGGG 59.809 55.000 0.00 0.00 0.00 5.40
173 174 1.344065 GTGGTTTAGGGGTTTTGGGG 58.656 55.000 0.00 0.00 0.00 4.96
174 175 1.344065 GGTGGTTTAGGGGTTTTGGG 58.656 55.000 0.00 0.00 0.00 4.12
175 176 1.344065 GGGTGGTTTAGGGGTTTTGG 58.656 55.000 0.00 0.00 0.00 3.28
176 177 1.132977 AGGGGTGGTTTAGGGGTTTTG 60.133 52.381 0.00 0.00 0.00 2.44
177 178 1.247260 AGGGGTGGTTTAGGGGTTTT 58.753 50.000 0.00 0.00 0.00 2.43
178 179 1.247260 AAGGGGTGGTTTAGGGGTTT 58.753 50.000 0.00 0.00 0.00 3.27
179 180 1.247260 AAAGGGGTGGTTTAGGGGTT 58.753 50.000 0.00 0.00 0.00 4.11
180 181 1.148446 GAAAAGGGGTGGTTTAGGGGT 59.852 52.381 0.00 0.00 0.00 4.95
181 182 1.148236 TGAAAAGGGGTGGTTTAGGGG 59.852 52.381 0.00 0.00 0.00 4.79
182 183 2.687003 TGAAAAGGGGTGGTTTAGGG 57.313 50.000 0.00 0.00 0.00 3.53
183 184 5.360649 TTTTTGAAAAGGGGTGGTTTAGG 57.639 39.130 0.00 0.00 0.00 2.69
206 207 2.224967 ACTGGCAGGAGCTGAGATTTTT 60.225 45.455 20.34 0.00 41.70 1.94
207 208 1.353694 ACTGGCAGGAGCTGAGATTTT 59.646 47.619 20.34 0.00 41.70 1.82
208 209 0.990374 ACTGGCAGGAGCTGAGATTT 59.010 50.000 20.34 0.00 41.70 2.17
209 210 0.990374 AACTGGCAGGAGCTGAGATT 59.010 50.000 20.34 0.00 41.70 2.40
210 211 0.252479 CAACTGGCAGGAGCTGAGAT 59.748 55.000 20.34 0.00 41.70 2.75
211 212 1.675801 CAACTGGCAGGAGCTGAGA 59.324 57.895 20.34 0.00 41.70 3.27
212 213 2.039405 GCAACTGGCAGGAGCTGAG 61.039 63.158 20.34 1.38 43.97 3.35
213 214 2.033141 GCAACTGGCAGGAGCTGA 59.967 61.111 20.34 0.00 43.97 4.26
229 230 2.978452 ATAGGCGTCCATGCGTCAGC 62.978 60.000 0.30 0.00 45.41 4.26
230 231 0.530650 AATAGGCGTCCATGCGTCAG 60.531 55.000 0.30 0.00 39.17 3.51
231 232 0.809636 CAATAGGCGTCCATGCGTCA 60.810 55.000 0.30 0.00 39.17 4.35
232 233 1.498865 CCAATAGGCGTCCATGCGTC 61.499 60.000 0.00 0.00 36.64 5.19
233 234 1.523711 CCAATAGGCGTCCATGCGT 60.524 57.895 0.00 0.00 36.79 5.24
234 235 1.498865 GACCAATAGGCGTCCATGCG 61.499 60.000 0.00 0.00 39.06 4.73
235 236 1.166531 GGACCAATAGGCGTCCATGC 61.167 60.000 3.94 0.00 46.59 4.06
236 237 3.006672 GGACCAATAGGCGTCCATG 57.993 57.895 3.94 0.00 46.59 3.66
239 240 2.108362 CGGGACCAATAGGCGTCC 59.892 66.667 0.00 0.37 46.63 4.79
240 241 2.108362 CCGGGACCAATAGGCGTC 59.892 66.667 0.00 0.00 39.06 5.19
241 242 2.295602 AACCGGGACCAATAGGCGT 61.296 57.895 6.32 0.00 39.06 5.68
242 243 1.817941 CAACCGGGACCAATAGGCG 60.818 63.158 6.32 0.00 39.06 5.52
243 244 0.182775 ATCAACCGGGACCAATAGGC 59.817 55.000 6.32 0.00 39.06 3.93
244 245 1.967319 CATCAACCGGGACCAATAGG 58.033 55.000 6.32 0.00 42.21 2.57
245 246 1.308998 GCATCAACCGGGACCAATAG 58.691 55.000 6.32 0.00 0.00 1.73
246 247 0.106918 GGCATCAACCGGGACCAATA 60.107 55.000 6.32 0.00 0.00 1.90
247 248 1.379843 GGCATCAACCGGGACCAAT 60.380 57.895 6.32 0.00 0.00 3.16
248 249 2.034999 GGCATCAACCGGGACCAA 59.965 61.111 6.32 0.00 0.00 3.67
249 250 3.253061 TGGCATCAACCGGGACCA 61.253 61.111 6.32 0.26 0.00 4.02
250 251 2.750237 GTGGCATCAACCGGGACC 60.750 66.667 6.32 0.00 0.00 4.46
251 252 2.750237 GGTGGCATCAACCGGGAC 60.750 66.667 6.32 0.00 0.00 4.46
252 253 2.835049 TTGGTGGCATCAACCGGGA 61.835 57.895 9.58 0.00 0.00 5.14
253 254 2.282816 TTGGTGGCATCAACCGGG 60.283 61.111 9.58 0.00 0.00 5.73
254 255 2.961768 GTTGGTGGCATCAACCGG 59.038 61.111 29.00 0.00 38.71 5.28
257 258 2.635443 CCCGGTTGGTGGCATCAAC 61.635 63.158 30.75 30.75 42.53 3.18
258 259 2.282816 CCCGGTTGGTGGCATCAA 60.283 61.111 9.58 9.58 0.00 2.57
259 260 3.253061 TCCCGGTTGGTGGCATCA 61.253 61.111 0.00 0.00 34.77 3.07
260 261 2.750237 GTCCCGGTTGGTGGCATC 60.750 66.667 0.00 0.00 34.77 3.91
261 262 4.360405 GGTCCCGGTTGGTGGCAT 62.360 66.667 0.00 0.00 34.77 4.40
263 264 4.589675 TTGGTCCCGGTTGGTGGC 62.590 66.667 0.00 0.00 34.77 5.01
264 265 1.901464 CTTTGGTCCCGGTTGGTGG 60.901 63.158 0.00 0.00 34.77 4.61
265 266 1.901464 CCTTTGGTCCCGGTTGGTG 60.901 63.158 0.00 0.00 34.77 4.17
266 267 2.518933 CCTTTGGTCCCGGTTGGT 59.481 61.111 0.00 0.00 34.77 3.67
267 268 2.282887 CCCTTTGGTCCCGGTTGG 60.283 66.667 0.00 0.00 0.00 3.77
268 269 2.989253 GCCCTTTGGTCCCGGTTG 60.989 66.667 0.00 0.00 0.00 3.77
269 270 4.295199 GGCCCTTTGGTCCCGGTT 62.295 66.667 0.00 0.00 0.00 4.44
271 272 4.426313 GAGGCCCTTTGGTCCCGG 62.426 72.222 0.00 0.00 36.69 5.73
272 273 4.426313 GGAGGCCCTTTGGTCCCG 62.426 72.222 0.00 0.00 36.69 5.14
273 274 2.941583 AGGAGGCCCTTTGGTCCC 60.942 66.667 0.00 0.00 40.78 4.46
274 275 2.356667 CAGGAGGCCCTTTGGTCC 59.643 66.667 0.00 0.00 42.02 4.46
275 276 2.361737 GCAGGAGGCCCTTTGGTC 60.362 66.667 0.00 0.00 42.02 4.02
317 318 3.866582 CGGGACAGATGGGCCTCC 61.867 72.222 4.53 2.00 0.00 4.30
318 319 3.866582 CCGGGACAGATGGGCCTC 61.867 72.222 4.53 0.00 0.00 4.70
319 320 4.741239 ACCGGGACAGATGGGCCT 62.741 66.667 6.32 0.00 0.00 5.19
320 321 3.699134 GAACCGGGACAGATGGGCC 62.699 68.421 6.32 0.00 0.00 5.80
321 322 2.124695 GAACCGGGACAGATGGGC 60.125 66.667 6.32 0.00 0.00 5.36
322 323 2.186903 CGAACCGGGACAGATGGG 59.813 66.667 6.32 0.00 0.00 4.00
323 324 1.447838 CACGAACCGGGACAGATGG 60.448 63.158 6.32 0.00 28.17 3.51
324 325 0.528924 TACACGAACCGGGACAGATG 59.471 55.000 6.32 0.00 32.98 2.90
325 326 1.203994 CTTACACGAACCGGGACAGAT 59.796 52.381 6.32 0.00 32.98 2.90
326 327 0.599558 CTTACACGAACCGGGACAGA 59.400 55.000 6.32 0.00 32.98 3.41
327 328 0.599558 TCTTACACGAACCGGGACAG 59.400 55.000 6.32 0.00 32.98 3.51
328 329 1.039068 TTCTTACACGAACCGGGACA 58.961 50.000 6.32 0.00 32.98 4.02
329 330 1.422388 GTTCTTACACGAACCGGGAC 58.578 55.000 6.32 0.00 37.82 4.46
330 331 3.892200 GTTCTTACACGAACCGGGA 57.108 52.632 6.32 0.00 37.82 5.14
335 336 2.747436 AGTTCCGGTTCTTACACGAAC 58.253 47.619 0.00 0.00 41.91 3.95
336 337 4.582701 TTAGTTCCGGTTCTTACACGAA 57.417 40.909 0.00 0.00 0.00 3.85
337 338 4.549458 CTTTAGTTCCGGTTCTTACACGA 58.451 43.478 0.00 0.00 0.00 4.35
338 339 3.676646 CCTTTAGTTCCGGTTCTTACACG 59.323 47.826 0.00 0.00 0.00 4.49
339 340 3.434641 GCCTTTAGTTCCGGTTCTTACAC 59.565 47.826 0.00 0.00 0.00 2.90
340 341 3.557686 GGCCTTTAGTTCCGGTTCTTACA 60.558 47.826 0.00 0.00 0.00 2.41
341 342 3.005554 GGCCTTTAGTTCCGGTTCTTAC 58.994 50.000 0.00 0.00 0.00 2.34
342 343 2.908351 AGGCCTTTAGTTCCGGTTCTTA 59.092 45.455 0.00 0.00 0.00 2.10
343 344 1.703513 AGGCCTTTAGTTCCGGTTCTT 59.296 47.619 0.00 0.00 0.00 2.52
344 345 1.359168 AGGCCTTTAGTTCCGGTTCT 58.641 50.000 0.00 3.72 0.00 3.01
345 346 2.419713 CCTAGGCCTTTAGTTCCGGTTC 60.420 54.545 12.58 0.00 0.00 3.62
346 347 1.558294 CCTAGGCCTTTAGTTCCGGTT 59.442 52.381 12.58 0.00 0.00 4.44
347 348 1.201424 CCTAGGCCTTTAGTTCCGGT 58.799 55.000 12.58 0.00 0.00 5.28
348 349 0.468648 CCCTAGGCCTTTAGTTCCGG 59.531 60.000 12.58 0.00 0.00 5.14
349 350 0.179054 GCCCTAGGCCTTTAGTTCCG 60.179 60.000 12.58 0.00 44.06 4.30
350 351 3.802862 GCCCTAGGCCTTTAGTTCC 57.197 57.895 12.58 0.00 44.06 3.62
361 362 2.102084 GGGTCGTTACTAAAGCCCTAGG 59.898 54.545 0.06 0.06 33.58 3.02
362 363 3.029570 AGGGTCGTTACTAAAGCCCTAG 58.970 50.000 12.05 0.00 44.00 3.02
363 364 3.105959 AGGGTCGTTACTAAAGCCCTA 57.894 47.619 12.05 0.00 44.00 3.53
364 365 1.948391 AGGGTCGTTACTAAAGCCCT 58.052 50.000 9.43 9.43 41.31 5.19
365 366 2.775911 AAGGGTCGTTACTAAAGCCC 57.224 50.000 0.00 0.00 36.46 5.19
366 367 4.825422 ACTAAAGGGTCGTTACTAAAGCC 58.175 43.478 0.00 0.00 0.00 4.35
367 368 4.867047 GGACTAAAGGGTCGTTACTAAAGC 59.133 45.833 0.00 0.00 37.12 3.51
368 369 5.414360 GGGACTAAAGGGTCGTTACTAAAG 58.586 45.833 0.00 0.00 37.12 1.85
369 370 4.082245 CGGGACTAAAGGGTCGTTACTAAA 60.082 45.833 0.00 0.00 37.12 1.85
370 371 3.443681 CGGGACTAAAGGGTCGTTACTAA 59.556 47.826 0.00 0.00 37.12 2.24
371 372 3.016736 CGGGACTAAAGGGTCGTTACTA 58.983 50.000 0.00 0.00 37.12 1.82
372 373 1.821136 CGGGACTAAAGGGTCGTTACT 59.179 52.381 0.00 0.00 37.12 2.24
373 374 1.134995 CCGGGACTAAAGGGTCGTTAC 60.135 57.143 0.00 0.00 37.12 2.50
374 375 1.185315 CCGGGACTAAAGGGTCGTTA 58.815 55.000 0.00 0.00 37.12 3.18
375 376 0.833409 ACCGGGACTAAAGGGTCGTT 60.833 55.000 6.32 0.00 37.12 3.85
376 377 0.833409 AACCGGGACTAAAGGGTCGT 60.833 55.000 6.32 0.00 37.12 4.34
377 378 0.108472 GAACCGGGACTAAAGGGTCG 60.108 60.000 6.32 0.00 37.12 4.79
378 379 0.978907 TGAACCGGGACTAAAGGGTC 59.021 55.000 6.32 0.00 41.92 4.46
379 380 1.437397 TTGAACCGGGACTAAAGGGT 58.563 50.000 6.32 0.00 0.00 4.34
380 381 2.801077 ATTGAACCGGGACTAAAGGG 57.199 50.000 6.32 0.00 0.00 3.95
381 382 3.943381 GGTTATTGAACCGGGACTAAAGG 59.057 47.826 6.32 0.00 45.73 3.11
393 394 3.674955 GCCATTTGTCCCGGTTATTGAAC 60.675 47.826 0.00 0.00 34.56 3.18
394 395 2.494073 GCCATTTGTCCCGGTTATTGAA 59.506 45.455 0.00 0.00 0.00 2.69
395 396 2.096248 GCCATTTGTCCCGGTTATTGA 58.904 47.619 0.00 0.00 0.00 2.57
396 397 1.136110 GGCCATTTGTCCCGGTTATTG 59.864 52.381 0.00 0.00 0.00 1.90
397 398 1.006639 AGGCCATTTGTCCCGGTTATT 59.993 47.619 5.01 0.00 0.00 1.40
398 399 0.629058 AGGCCATTTGTCCCGGTTAT 59.371 50.000 5.01 0.00 0.00 1.89
399 400 0.406361 AAGGCCATTTGTCCCGGTTA 59.594 50.000 5.01 0.00 0.00 2.85
400 401 0.471022 AAAGGCCATTTGTCCCGGTT 60.471 50.000 5.01 0.00 0.00 4.44
401 402 0.471022 AAAAGGCCATTTGTCCCGGT 60.471 50.000 5.01 0.00 0.00 5.28
402 403 0.684535 AAAAAGGCCATTTGTCCCGG 59.315 50.000 6.74 0.00 0.00 5.73
403 404 1.618343 AGAAAAAGGCCATTTGTCCCG 59.382 47.619 6.74 0.00 35.95 5.14
404 405 3.832490 AGTAGAAAAAGGCCATTTGTCCC 59.168 43.478 6.74 2.76 35.95 4.46
405 406 5.710567 ACTAGTAGAAAAAGGCCATTTGTCC 59.289 40.000 6.74 0.03 35.95 4.02
406 407 6.430000 TCACTAGTAGAAAAAGGCCATTTGTC 59.570 38.462 6.74 8.06 35.61 3.18
407 408 6.303839 TCACTAGTAGAAAAAGGCCATTTGT 58.696 36.000 6.74 7.74 0.00 2.83
408 409 6.655003 TCTCACTAGTAGAAAAAGGCCATTTG 59.345 38.462 6.74 0.00 0.00 2.32
409 410 6.655425 GTCTCACTAGTAGAAAAAGGCCATTT 59.345 38.462 5.01 1.55 0.00 2.32
410 411 6.174049 GTCTCACTAGTAGAAAAAGGCCATT 58.826 40.000 5.01 0.00 0.00 3.16
411 412 5.248477 TGTCTCACTAGTAGAAAAAGGCCAT 59.752 40.000 5.01 0.00 0.00 4.40
412 413 4.591498 TGTCTCACTAGTAGAAAAAGGCCA 59.409 41.667 5.01 0.00 0.00 5.36
413 414 4.930405 GTGTCTCACTAGTAGAAAAAGGCC 59.070 45.833 3.59 0.00 0.00 5.19
414 415 4.930405 GGTGTCTCACTAGTAGAAAAAGGC 59.070 45.833 3.59 0.00 34.40 4.35
415 416 6.097915 TGGTGTCTCACTAGTAGAAAAAGG 57.902 41.667 3.59 0.00 34.40 3.11
416 417 7.976734 CCTATGGTGTCTCACTAGTAGAAAAAG 59.023 40.741 3.59 0.00 34.40 2.27
417 418 7.093465 CCCTATGGTGTCTCACTAGTAGAAAAA 60.093 40.741 3.59 0.00 34.40 1.94
418 419 6.380274 CCCTATGGTGTCTCACTAGTAGAAAA 59.620 42.308 3.59 0.00 34.40 2.29
419 420 5.892119 CCCTATGGTGTCTCACTAGTAGAAA 59.108 44.000 3.59 0.00 34.40 2.52
420 421 5.044328 ACCCTATGGTGTCTCACTAGTAGAA 60.044 44.000 3.59 0.00 45.58 2.10
421 422 4.477581 ACCCTATGGTGTCTCACTAGTAGA 59.522 45.833 3.59 0.00 45.58 2.59
422 423 4.794334 ACCCTATGGTGTCTCACTAGTAG 58.206 47.826 0.00 0.00 45.58 2.57
423 424 4.875578 ACCCTATGGTGTCTCACTAGTA 57.124 45.455 0.00 0.00 45.58 1.82
424 425 3.759815 ACCCTATGGTGTCTCACTAGT 57.240 47.619 0.00 0.00 45.58 2.57
502 507 8.579863 CCAGGTATCTTGTTCTTTTCTTTTGAT 58.420 33.333 0.00 0.00 0.00 2.57
581 595 1.476085 TGCTTTGGACCAACACAACAG 59.524 47.619 6.36 1.44 0.00 3.16
597 611 1.985473 TCCTTGCAATCACAGTGCTT 58.015 45.000 0.00 0.00 42.69 3.91
664 681 4.276678 CAGCACATGTCCTGAGAAAAGAAA 59.723 41.667 11.61 0.00 0.00 2.52
714 731 5.123979 CACCTCCTATGCAACTAAGAAAACC 59.876 44.000 0.00 0.00 0.00 3.27
731 748 0.038744 CTGGATGCCAAACACCTCCT 59.961 55.000 0.00 0.00 30.80 3.69
736 753 0.242017 GCACTCTGGATGCCAAACAC 59.758 55.000 0.00 0.00 37.08 3.32
781 798 9.797642 ACCTCATAATCACATATTTGCTGATTA 57.202 29.630 15.89 15.89 38.58 1.75
782 799 8.701908 ACCTCATAATCACATATTTGCTGATT 57.298 30.769 13.79 13.79 37.37 2.57
783 800 9.445878 CTACCTCATAATCACATATTTGCTGAT 57.554 33.333 0.00 0.00 0.00 2.90
795 812 6.457528 GCAACAAAGAGCTACCTCATAATCAC 60.458 42.308 0.00 0.00 40.68 3.06
799 816 5.165961 AGCAACAAAGAGCTACCTCATAA 57.834 39.130 0.00 0.00 39.78 1.90
820 837 7.359595 TGCAACTGCTTAATTAGTACACAAAG 58.640 34.615 2.95 0.00 42.66 2.77
862 880 3.795877 AGAACTGCATGTTTTTGTTGGG 58.204 40.909 0.00 0.00 39.30 4.12
1161 1210 9.620259 AACTCCCACAAGATATCTAGAATTTTC 57.380 33.333 5.46 0.00 0.00 2.29
1540 1597 1.072159 ACTGCAGAGTCAAGGCACC 59.928 57.895 23.35 0.00 33.34 5.01
1640 1697 5.305644 TCTTTCTACAAGAAGCAGAGGAACT 59.694 40.000 0.00 0.00 37.06 3.01
1773 1836 0.112412 GGTGTCCCTGGTTTCCACAT 59.888 55.000 0.00 0.00 0.00 3.21
1895 1958 5.673337 TTCATAGTCAAAACACAGCAGAC 57.327 39.130 0.00 0.00 0.00 3.51
1916 1979 9.159254 TGGTCTCCTCAATATCTGTACATTATT 57.841 33.333 0.00 0.79 0.00 1.40
1919 1982 7.345653 TCTTGGTCTCCTCAATATCTGTACATT 59.654 37.037 0.00 0.00 0.00 2.71
1921 1984 6.194967 TCTTGGTCTCCTCAATATCTGTACA 58.805 40.000 0.00 0.00 0.00 2.90
1922 1985 6.716934 TCTTGGTCTCCTCAATATCTGTAC 57.283 41.667 0.00 0.00 0.00 2.90
1923 1986 7.565029 TCATTCTTGGTCTCCTCAATATCTGTA 59.435 37.037 0.00 0.00 0.00 2.74
1924 1987 6.385176 TCATTCTTGGTCTCCTCAATATCTGT 59.615 38.462 0.00 0.00 0.00 3.41
2222 2321 4.793201 AGCTCCCTTCAGTAAGTTTTGTT 58.207 39.130 0.00 0.00 0.00 2.83
2262 2362 0.877071 CCACTGATGAAGCACACCAC 59.123 55.000 0.00 0.00 0.00 4.16
2265 2365 2.983229 AGATCCACTGATGAAGCACAC 58.017 47.619 0.00 0.00 0.00 3.82
2289 2389 9.996554 TGAGACAATGATTCTTTAAGTAACAGA 57.003 29.630 0.00 0.00 0.00 3.41
2466 2568 7.645058 AACCAAATACCACAAGAATCATAGG 57.355 36.000 0.00 0.00 0.00 2.57
2469 2571 9.034800 ACAATAACCAAATACCACAAGAATCAT 57.965 29.630 0.00 0.00 0.00 2.45
2471 2573 8.303876 ACACAATAACCAAATACCACAAGAATC 58.696 33.333 0.00 0.00 0.00 2.52
2516 2620 9.771915 GACTTTCAGTGTACTATAAGTCAGTAC 57.228 37.037 21.32 5.84 45.64 2.73
2525 2629 6.656270 TGAACTCCGACTTTCAGTGTACTATA 59.344 38.462 0.00 0.00 0.00 1.31
2632 2865 1.478105 GGTTGTCCATTGATTCAGGCC 59.522 52.381 0.00 0.00 0.00 5.19
2796 3123 3.388024 TCACTGCTTCTGGTAGTTGAACT 59.612 43.478 2.37 2.37 38.80 3.01
2814 3142 7.489239 AGGTTTTCTAAGCTAGAGAATCACT 57.511 36.000 10.85 7.28 40.17 3.41
2949 3312 4.938080 AGTCTCATAGCAAGATAACACGG 58.062 43.478 0.00 0.00 0.00 4.94
3067 3430 9.177608 AGTGATATAAAAAGCTGATGCAAACTA 57.822 29.630 0.00 0.00 42.74 2.24
3244 3696 2.747460 GCGTTGCTGCCTGATCCA 60.747 61.111 0.00 0.00 0.00 3.41
3412 3864 0.393077 AGCCGTACTGCTGAACAACT 59.607 50.000 11.32 0.00 40.90 3.16
3431 3883 2.048222 CTCGAGGGTGCGCTTCAA 60.048 61.111 9.73 0.00 0.00 2.69
3457 3909 2.883828 CGGCAAGGTCCCTGTCAGT 61.884 63.158 0.00 0.00 0.00 3.41
3498 3950 5.068198 TCGGTATATAACTTCCGCAGAAAGT 59.932 40.000 4.96 0.00 42.28 2.66
3555 4013 8.225777 GTGCATTTCAAAATTCATTTCCTTCTC 58.774 33.333 0.00 0.00 0.00 2.87
3774 4238 1.226746 CAAACGAAAAGACGAGGCCT 58.773 50.000 3.86 3.86 37.03 5.19
3781 4265 8.782533 ATTCTTGTAATCACAAACGAAAAGAC 57.217 30.769 0.00 0.00 43.92 3.01
3813 4297 7.915508 TGTAATCGCAAACCATTACAAGATAG 58.084 34.615 3.42 0.00 40.77 2.08
3816 4300 6.561737 TTGTAATCGCAAACCATTACAAGA 57.438 33.333 11.62 0.00 44.72 3.02
3818 4302 6.561737 TCTTGTAATCGCAAACCATTACAA 57.438 33.333 13.82 13.82 46.20 2.41
3819 4303 6.561737 TTCTTGTAATCGCAAACCATTACA 57.438 33.333 2.07 2.07 41.57 2.41
3822 4306 8.898761 TGTATATTCTTGTAATCGCAAACCATT 58.101 29.630 0.00 0.00 0.00 3.16
3823 4307 8.445275 TGTATATTCTTGTAATCGCAAACCAT 57.555 30.769 0.00 0.00 0.00 3.55
3824 4308 7.851387 TGTATATTCTTGTAATCGCAAACCA 57.149 32.000 0.00 0.00 0.00 3.67
3825 4309 8.774586 AGATGTATATTCTTGTAATCGCAAACC 58.225 33.333 0.00 0.00 0.00 3.27
4069 4653 1.243902 GGCGTCAAATTCCTGTTCCA 58.756 50.000 0.00 0.00 0.00 3.53
4074 4663 1.501741 CCGTGGCGTCAAATTCCTG 59.498 57.895 0.00 0.00 0.00 3.86
4075 4664 2.332654 GCCGTGGCGTCAAATTCCT 61.333 57.895 0.00 0.00 0.00 3.36
4076 4665 2.178273 GCCGTGGCGTCAAATTCC 59.822 61.111 0.00 0.00 0.00 3.01
4172 6668 6.485830 TTTCAGCCTAGCTATACAATGAGT 57.514 37.500 0.00 0.00 36.40 3.41
4173 6669 5.407995 GCTTTCAGCCTAGCTATACAATGAG 59.592 44.000 0.00 0.00 36.40 2.90
4175 6671 5.303971 AGCTTTCAGCCTAGCTATACAATG 58.696 41.667 0.00 0.00 45.46 2.82
4176 6672 5.559148 AGCTTTCAGCCTAGCTATACAAT 57.441 39.130 0.00 0.00 45.46 2.71
4373 6871 2.765135 CCTGGTCTCATGAGTCATGACT 59.235 50.000 28.18 28.23 44.60 3.41
4374 6872 2.762887 TCCTGGTCTCATGAGTCATGAC 59.237 50.000 28.18 20.53 44.60 3.06
4375 6873 3.105959 TCCTGGTCTCATGAGTCATGA 57.894 47.619 29.39 29.39 46.84 3.07
4376 6874 3.900966 TTCCTGGTCTCATGAGTCATG 57.099 47.619 24.60 24.60 42.60 3.07
4377 6875 5.304101 GTCTATTCCTGGTCTCATGAGTCAT 59.696 44.000 21.92 0.00 0.00 3.06
4381 6879 4.648762 ACTGTCTATTCCTGGTCTCATGAG 59.351 45.833 17.07 17.07 0.00 2.90
4383 6881 4.161189 ACACTGTCTATTCCTGGTCTCATG 59.839 45.833 0.00 0.00 0.00 3.07
4445 6951 7.244898 ACGCGTTAATGCTTTCAAATATTGTA 58.755 30.769 17.25 0.00 0.00 2.41
4468 6974 4.514545 TGAATTGCGCTATGACTTTACG 57.485 40.909 9.73 0.00 0.00 3.18
4469 6975 6.719365 AGATTGAATTGCGCTATGACTTTAC 58.281 36.000 9.73 0.00 0.00 2.01


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.