Multiple sequence alignment - TraesCS2D01G016400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2D01G016400 chr2D 100.000 4775 0 0 1 4775 7969131 7973905 0.000000e+00 8818.0
1 TraesCS2D01G016400 chr2D 80.199 2813 506 37 906 3700 598814008 598816787 0.000000e+00 2061.0
2 TraesCS2D01G016400 chr2D 85.096 624 59 21 4033 4643 8280550 8281152 1.470000e-169 606.0
3 TraesCS2D01G016400 chr2D 90.476 63 4 1 4715 4775 8281341 8281403 1.100000e-11 82.4
4 TraesCS2D01G016400 chr2D 97.297 37 1 0 4669 4705 7973762 7973798 3.990000e-06 63.9
5 TraesCS2D01G016400 chr2D 97.297 37 1 0 4632 4668 7973799 7973835 3.990000e-06 63.9
6 TraesCS2D01G016400 chrUn 95.275 3788 141 17 553 4334 11754067 11750312 0.000000e+00 5969.0
7 TraesCS2D01G016400 chrUn 96.035 454 14 3 1 454 11754508 11754059 0.000000e+00 736.0
8 TraesCS2D01G016400 chrUn 96.154 338 8 4 4326 4662 11748416 11748083 9.030000e-152 547.0
9 TraesCS2D01G016400 chrUn 84.483 116 8 7 4669 4775 11748112 11747998 6.540000e-19 106.0
10 TraesCS2D01G016400 chr2B 87.487 2973 333 25 811 3769 4642563 4645510 0.000000e+00 3393.0
11 TraesCS2D01G016400 chr2B 79.993 2814 508 45 906 3700 727685966 727688743 0.000000e+00 2026.0
12 TraesCS2D01G016400 chr2B 95.425 153 7 0 4502 4654 4646348 4646500 1.330000e-60 244.0
13 TraesCS2D01G016400 chr2B 89.617 183 16 3 508 688 603410271 603410452 3.720000e-56 230.0
14 TraesCS2D01G016400 chr2B 91.333 150 12 1 1 150 4640275 4640423 2.250000e-48 204.0
15 TraesCS2D01G016400 chr2B 89.831 118 10 2 4240 4357 4646146 4646261 2.980000e-32 150.0
16 TraesCS2D01G016400 chr2B 93.651 63 4 0 4713 4775 4646536 4646598 1.410000e-15 95.3
17 TraesCS2D01G016400 chr2B 96.078 51 2 0 460 510 794901264 794901214 3.060000e-12 84.2
18 TraesCS2D01G016400 chr2A 80.819 2831 492 38 888 3700 733087692 733090489 0.000000e+00 2172.0
19 TraesCS2D01G016400 chr2A 84.053 1505 195 25 2223 3702 5771580 5773064 0.000000e+00 1408.0
20 TraesCS2D01G016400 chr2A 81.028 564 65 21 3683 4217 5779539 5780089 1.240000e-110 411.0
21 TraesCS2D01G016400 chr7D 80.148 2846 527 30 880 3713 89533135 89530316 0.000000e+00 2091.0
22 TraesCS2D01G016400 chr7D 79.312 2934 552 38 849 3766 20442333 20445227 0.000000e+00 2004.0
23 TraesCS2D01G016400 chr7D 79.236 2904 540 49 880 3759 20947052 20949916 0.000000e+00 1964.0
24 TraesCS2D01G016400 chr7D 77.974 2438 487 38 1342 3759 20332570 20334977 0.000000e+00 1482.0
25 TraesCS2D01G016400 chr7D 89.071 183 16 4 514 693 17861647 17861466 1.730000e-54 224.0
26 TraesCS2D01G016400 chr7A 79.528 2882 544 37 849 3715 20482680 20485530 0.000000e+00 2012.0
27 TraesCS2D01G016400 chr7A 79.072 2867 554 34 906 3759 20779465 20782298 0.000000e+00 1929.0
28 TraesCS2D01G016400 chr7A 79.192 2797 517 52 940 3715 20980569 20983321 0.000000e+00 1881.0
29 TraesCS2D01G016400 chr1B 74.673 2215 494 53 1482 3673 10409739 10407569 0.000000e+00 920.0
30 TraesCS2D01G016400 chr3B 90.395 177 15 2 512 687 817426166 817426341 1.030000e-56 231.0
31 TraesCS2D01G016400 chr3B 89.071 183 19 1 508 689 804973815 804973997 4.810000e-55 226.0
32 TraesCS2D01G016400 chr3B 93.333 60 4 0 451 510 807502519 807502460 6.580000e-14 89.8
33 TraesCS2D01G016400 chr4D 88.587 184 19 2 514 696 488485539 488485357 6.220000e-54 222.0
34 TraesCS2D01G016400 chr1D 89.714 175 16 2 514 687 207230613 207230440 6.220000e-54 222.0
35 TraesCS2D01G016400 chr1D 89.011 182 17 3 508 688 355830184 355830363 6.220000e-54 222.0
36 TraesCS2D01G016400 chr6D 88.889 180 18 2 514 691 402755859 402755680 2.240000e-53 220.0
37 TraesCS2D01G016400 chr5D 91.045 67 6 0 444 510 246341550 246341616 1.830000e-14 91.6
38 TraesCS2D01G016400 chr5D 88.889 54 6 0 451 504 536533611 536533558 3.080000e-07 67.6
39 TraesCS2D01G016400 chr7B 90.741 54 5 0 451 504 72980074 72980021 6.630000e-09 73.1
40 TraesCS2D01G016400 chr1A 88.333 60 7 0 451 510 27132567 27132508 6.630000e-09 73.1
41 TraesCS2D01G016400 chr6A 96.875 32 1 0 450 481 557413148 557413117 2.000000e-03 54.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2D01G016400 chr2D 7969131 7973905 4774 False 2981.933333 8818 98.19800 1 4775 3 chr2D.!!$F2 4774
1 TraesCS2D01G016400 chr2D 598814008 598816787 2779 False 2061.000000 2061 80.19900 906 3700 1 chr2D.!!$F1 2794
2 TraesCS2D01G016400 chr2D 8280550 8281403 853 False 344.200000 606 87.78600 4033 4775 2 chr2D.!!$F3 742
3 TraesCS2D01G016400 chrUn 11747998 11754508 6510 True 1839.500000 5969 92.98675 1 4775 4 chrUn.!!$R1 4774
4 TraesCS2D01G016400 chr2B 727685966 727688743 2777 False 2026.000000 2026 79.99300 906 3700 1 chr2B.!!$F2 2794
5 TraesCS2D01G016400 chr2B 4640275 4646598 6323 False 817.260000 3393 91.54540 1 4775 5 chr2B.!!$F3 4774
6 TraesCS2D01G016400 chr2A 733087692 733090489 2797 False 2172.000000 2172 80.81900 888 3700 1 chr2A.!!$F3 2812
7 TraesCS2D01G016400 chr2A 5771580 5773064 1484 False 1408.000000 1408 84.05300 2223 3702 1 chr2A.!!$F1 1479
8 TraesCS2D01G016400 chr2A 5779539 5780089 550 False 411.000000 411 81.02800 3683 4217 1 chr2A.!!$F2 534
9 TraesCS2D01G016400 chr7D 89530316 89533135 2819 True 2091.000000 2091 80.14800 880 3713 1 chr7D.!!$R2 2833
10 TraesCS2D01G016400 chr7D 20442333 20445227 2894 False 2004.000000 2004 79.31200 849 3766 1 chr7D.!!$F2 2917
11 TraesCS2D01G016400 chr7D 20947052 20949916 2864 False 1964.000000 1964 79.23600 880 3759 1 chr7D.!!$F3 2879
12 TraesCS2D01G016400 chr7D 20332570 20334977 2407 False 1482.000000 1482 77.97400 1342 3759 1 chr7D.!!$F1 2417
13 TraesCS2D01G016400 chr7A 20482680 20485530 2850 False 2012.000000 2012 79.52800 849 3715 1 chr7A.!!$F1 2866
14 TraesCS2D01G016400 chr7A 20779465 20782298 2833 False 1929.000000 1929 79.07200 906 3759 1 chr7A.!!$F2 2853
15 TraesCS2D01G016400 chr7A 20980569 20983321 2752 False 1881.000000 1881 79.19200 940 3715 1 chr7A.!!$F3 2775
16 TraesCS2D01G016400 chr1B 10407569 10409739 2170 True 920.000000 920 74.67300 1482 3673 1 chr1B.!!$R1 2191

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
547 747 0.178984 TGGGATCGATGTAGGCCGTA 60.179 55.000 0.54 0.0 0.00 4.02 F
548 748 0.526662 GGGATCGATGTAGGCCGTAG 59.473 60.000 0.54 0.0 0.00 3.51 F
1247 3154 1.078497 TGCGGAAGGTAGCACATGG 60.078 57.895 0.00 0.0 38.59 3.66 F
2399 4313 1.123928 GAGGGGTTCATCGTGGAGAT 58.876 55.000 0.00 0.0 41.01 2.75 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1401 3308 0.244721 TCATCTCTGACAGGTGTGCG 59.755 55.000 1.81 0.00 34.39 5.34 R
2399 4313 0.403655 TTCTAATGTGCTGGCACCCA 59.596 50.000 20.80 5.87 45.63 4.51 R
2787 4718 1.067821 GCATCCGGAATCTTCTCGACT 59.932 52.381 9.01 0.00 0.00 4.18 R
3793 5758 0.736053 AGAGTTGAGAGCGATCGACC 59.264 55.000 21.57 9.26 34.59 4.79 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
29 30 7.874528 TGAAGGTCACAGCAATATGATACATAG 59.125 37.037 0.00 0.00 0.00 2.23
35 36 7.874528 TCACAGCAATATGATACATAGGTTGAG 59.125 37.037 0.00 0.00 0.00 3.02
112 113 5.825679 TGTATGTTTGCAAGTGTAAACTCCT 59.174 36.000 20.70 11.21 46.24 3.69
126 127 7.039923 AGTGTAAACTCCTAAAGAAGATCGTCA 60.040 37.037 11.35 0.00 0.00 4.35
153 154 4.925576 CGACGAATCTCCGGCCCG 62.926 72.222 0.00 0.00 33.11 6.13
443 643 1.792949 CTTAGCTTGCGTTCGAACTGT 59.207 47.619 24.80 6.47 0.00 3.55
447 647 0.784778 CTTGCGTTCGAACTGTCTCC 59.215 55.000 24.80 7.63 0.00 3.71
448 648 0.387929 TTGCGTTCGAACTGTCTCCT 59.612 50.000 24.80 0.00 0.00 3.69
451 651 2.034939 TGCGTTCGAACTGTCTCCTTTA 59.965 45.455 24.80 0.00 0.00 1.85
453 653 3.678548 GCGTTCGAACTGTCTCCTTTATT 59.321 43.478 24.80 0.00 0.00 1.40
454 654 4.860907 GCGTTCGAACTGTCTCCTTTATTA 59.139 41.667 24.80 0.00 0.00 0.98
455 655 5.346822 GCGTTCGAACTGTCTCCTTTATTAA 59.653 40.000 24.80 0.00 0.00 1.40
456 656 6.128742 GCGTTCGAACTGTCTCCTTTATTAAA 60.129 38.462 24.80 0.00 0.00 1.52
457 657 7.412672 GCGTTCGAACTGTCTCCTTTATTAAAT 60.413 37.037 24.80 0.00 0.00 1.40
458 658 8.440833 CGTTCGAACTGTCTCCTTTATTAAATT 58.559 33.333 24.80 0.00 0.00 1.82
460 660 9.496873 TTCGAACTGTCTCCTTTATTAAATTCA 57.503 29.630 0.00 0.00 0.00 2.57
461 661 9.667107 TCGAACTGTCTCCTTTATTAAATTCAT 57.333 29.630 0.00 0.00 0.00 2.57
462 662 9.708222 CGAACTGTCTCCTTTATTAAATTCATG 57.292 33.333 0.00 0.00 0.00 3.07
463 663 9.508567 GAACTGTCTCCTTTATTAAATTCATGC 57.491 33.333 0.00 0.00 0.00 4.06
464 664 8.814038 ACTGTCTCCTTTATTAAATTCATGCT 57.186 30.769 0.00 0.00 0.00 3.79
465 665 8.897752 ACTGTCTCCTTTATTAAATTCATGCTC 58.102 33.333 0.00 0.00 0.00 4.26
466 666 8.225603 TGTCTCCTTTATTAAATTCATGCTCC 57.774 34.615 0.00 0.00 0.00 4.70
467 667 7.833682 TGTCTCCTTTATTAAATTCATGCTCCA 59.166 33.333 0.00 0.00 0.00 3.86
468 668 8.348507 GTCTCCTTTATTAAATTCATGCTCCAG 58.651 37.037 0.00 0.00 0.00 3.86
470 670 8.225603 TCCTTTATTAAATTCATGCTCCAGTC 57.774 34.615 0.00 0.00 0.00 3.51
471 671 7.833682 TCCTTTATTAAATTCATGCTCCAGTCA 59.166 33.333 0.00 0.00 0.00 3.41
476 676 3.708403 ATTCATGCTCCAGTCAACTCA 57.292 42.857 0.00 0.00 0.00 3.41
477 677 3.708403 TTCATGCTCCAGTCAACTCAT 57.292 42.857 0.00 0.00 0.00 2.90
479 679 4.128925 TCATGCTCCAGTCAACTCATAC 57.871 45.455 0.00 0.00 0.00 2.39
480 680 3.515104 TCATGCTCCAGTCAACTCATACA 59.485 43.478 0.00 0.00 0.00 2.29
481 681 4.020307 TCATGCTCCAGTCAACTCATACAA 60.020 41.667 0.00 0.00 0.00 2.41
482 682 4.350368 TGCTCCAGTCAACTCATACAAA 57.650 40.909 0.00 0.00 0.00 2.83
483 683 4.713553 TGCTCCAGTCAACTCATACAAAA 58.286 39.130 0.00 0.00 0.00 2.44
485 685 4.757149 GCTCCAGTCAACTCATACAAAAGT 59.243 41.667 0.00 0.00 0.00 2.66
486 686 5.106908 GCTCCAGTCAACTCATACAAAAGTC 60.107 44.000 0.00 0.00 0.00 3.01
487 687 5.305585 TCCAGTCAACTCATACAAAAGTCC 58.694 41.667 0.00 0.00 0.00 3.85
488 688 5.063204 CCAGTCAACTCATACAAAAGTCCA 58.937 41.667 0.00 0.00 0.00 4.02
489 689 5.530915 CCAGTCAACTCATACAAAAGTCCAA 59.469 40.000 0.00 0.00 0.00 3.53
490 690 6.039270 CCAGTCAACTCATACAAAAGTCCAAA 59.961 38.462 0.00 0.00 0.00 3.28
491 691 6.912591 CAGTCAACTCATACAAAAGTCCAAAC 59.087 38.462 0.00 0.00 0.00 2.93
492 692 6.828785 AGTCAACTCATACAAAAGTCCAAACT 59.171 34.615 0.00 0.00 37.32 2.66
493 693 7.990886 AGTCAACTCATACAAAAGTCCAAACTA 59.009 33.333 0.00 0.00 33.48 2.24
494 694 8.617809 GTCAACTCATACAAAAGTCCAAACTAA 58.382 33.333 0.00 0.00 33.48 2.24
497 697 8.110860 ACTCATACAAAAGTCCAAACTAATGG 57.889 34.615 0.00 0.00 42.12 3.16
505 705 1.564348 TCCAAACTAATGGAGGGAGGC 59.436 52.381 0.00 0.00 44.52 4.70
506 706 1.668419 CAAACTAATGGAGGGAGGCG 58.332 55.000 0.00 0.00 0.00 5.52
507 707 0.546598 AAACTAATGGAGGGAGGCGG 59.453 55.000 0.00 0.00 0.00 6.13
508 708 1.345715 AACTAATGGAGGGAGGCGGG 61.346 60.000 0.00 0.00 0.00 6.13
509 709 3.168528 TAATGGAGGGAGGCGGGC 61.169 66.667 0.00 0.00 0.00 6.13
510 710 3.714078 TAATGGAGGGAGGCGGGCT 62.714 63.158 2.69 2.69 0.00 5.19
512 712 3.714078 ATGGAGGGAGGCGGGCTTA 62.714 63.158 5.24 0.00 0.00 3.09
513 713 2.849646 GGAGGGAGGCGGGCTTAT 60.850 66.667 5.24 0.00 0.00 1.73
514 714 2.452937 GGAGGGAGGCGGGCTTATT 61.453 63.158 5.24 0.00 0.00 1.40
515 715 1.532238 GAGGGAGGCGGGCTTATTT 59.468 57.895 5.24 0.00 0.00 1.40
516 716 0.763035 GAGGGAGGCGGGCTTATTTA 59.237 55.000 5.24 0.00 0.00 1.40
517 717 0.765510 AGGGAGGCGGGCTTATTTAG 59.234 55.000 5.24 0.00 0.00 1.85
518 718 0.250770 GGGAGGCGGGCTTATTTAGG 60.251 60.000 5.24 0.00 0.00 2.69
529 729 5.948992 GGCTTATTTAGGCCTTAGACATG 57.051 43.478 12.58 0.00 44.29 3.21
530 730 4.762251 GGCTTATTTAGGCCTTAGACATGG 59.238 45.833 12.58 0.00 44.29 3.66
531 731 4.762251 GCTTATTTAGGCCTTAGACATGGG 59.238 45.833 12.58 0.00 0.00 4.00
532 732 5.456186 GCTTATTTAGGCCTTAGACATGGGA 60.456 44.000 12.58 0.00 0.00 4.37
533 733 6.748332 GCTTATTTAGGCCTTAGACATGGGAT 60.748 42.308 12.58 0.00 0.00 3.85
534 734 4.706842 TTTAGGCCTTAGACATGGGATC 57.293 45.455 12.58 0.00 0.00 3.36
535 735 1.051812 AGGCCTTAGACATGGGATCG 58.948 55.000 0.00 0.00 0.00 3.69
536 736 1.048601 GGCCTTAGACATGGGATCGA 58.951 55.000 0.00 0.00 0.00 3.59
537 737 1.625818 GGCCTTAGACATGGGATCGAT 59.374 52.381 0.00 0.00 0.00 3.59
538 738 2.613977 GGCCTTAGACATGGGATCGATG 60.614 54.545 0.54 0.00 0.00 3.84
539 739 2.037772 GCCTTAGACATGGGATCGATGT 59.962 50.000 0.54 8.36 36.73 3.06
540 740 3.258372 GCCTTAGACATGGGATCGATGTA 59.742 47.826 0.54 0.00 34.10 2.29
541 741 4.619394 GCCTTAGACATGGGATCGATGTAG 60.619 50.000 0.54 4.23 34.10 2.74
542 742 4.081972 CCTTAGACATGGGATCGATGTAGG 60.082 50.000 0.54 8.46 34.10 3.18
543 743 1.620819 AGACATGGGATCGATGTAGGC 59.379 52.381 0.54 0.00 34.10 3.93
544 744 0.687354 ACATGGGATCGATGTAGGCC 59.313 55.000 0.54 0.00 32.12 5.19
545 745 0.390340 CATGGGATCGATGTAGGCCG 60.390 60.000 0.54 0.00 0.00 6.13
546 746 0.832135 ATGGGATCGATGTAGGCCGT 60.832 55.000 0.54 0.00 0.00 5.68
547 747 0.178984 TGGGATCGATGTAGGCCGTA 60.179 55.000 0.54 0.00 0.00 4.02
548 748 0.526662 GGGATCGATGTAGGCCGTAG 59.473 60.000 0.54 0.00 0.00 3.51
580 780 7.556733 TTATTTTAATACTACGTTGCCAGGG 57.443 36.000 0.00 0.00 0.00 4.45
644 844 1.522668 TGCTTCAACCAACTCATCCG 58.477 50.000 0.00 0.00 0.00 4.18
692 893 8.784043 AGCGGACAATATATTTTAACATCCTTC 58.216 33.333 0.00 0.00 0.00 3.46
735 936 7.793927 AGTGAGGCATTAGTATTCTTTTAGC 57.206 36.000 0.00 0.00 0.00 3.09
912 2813 7.975866 ATTAACGCATCACTTGATTCATTTC 57.024 32.000 0.00 0.00 31.21 2.17
1075 2982 3.200593 GAGCAGCACATCAGGCCG 61.201 66.667 0.00 0.00 0.00 6.13
1247 3154 1.078497 TGCGGAAGGTAGCACATGG 60.078 57.895 0.00 0.00 38.59 3.66
1356 3263 5.380043 AGAAAACCAAGATCTCTGCTTTCA 58.620 37.500 16.42 0.00 0.00 2.69
1401 3308 6.941857 AGTGAAGGAAATAGAGAAAGACCTC 58.058 40.000 0.00 0.00 0.00 3.85
2079 3993 2.878406 AGAAACAAACCATCACTGTCCG 59.122 45.455 0.00 0.00 0.00 4.79
2237 4151 9.838339 ATTGAGTTGGGAGATACTTAATAACTG 57.162 33.333 0.00 0.00 31.31 3.16
2399 4313 1.123928 GAGGGGTTCATCGTGGAGAT 58.876 55.000 0.00 0.00 41.01 2.75
2785 4716 5.012148 ACTGTGCTAGAATTAAGTGGTCTGT 59.988 40.000 0.00 0.00 0.00 3.41
2787 4718 5.011635 TGTGCTAGAATTAAGTGGTCTGTCA 59.988 40.000 0.00 0.00 0.00 3.58
2788 4719 5.578727 GTGCTAGAATTAAGTGGTCTGTCAG 59.421 44.000 0.00 0.00 0.00 3.51
2802 4733 2.420372 TCTGTCAGTCGAGAAGATTCCG 59.580 50.000 0.00 0.00 0.00 4.30
2815 4746 4.288105 AGAAGATTCCGGATGCTATTGGAT 59.712 41.667 4.15 0.00 0.00 3.41
3351 5293 0.832135 TGTTGGCGGAGTCTCCTCTT 60.832 55.000 17.00 0.00 37.86 2.85
3367 5315 3.160269 CCTCTTTTTCAAGCCATGGAGT 58.840 45.455 18.40 0.00 0.00 3.85
3401 5349 0.678395 CTGCATCTATCCTGGTCGCT 59.322 55.000 0.00 0.00 0.00 4.93
3680 5628 2.356227 CCCTCCAGCTTCTAAGTTTCCC 60.356 54.545 0.00 0.00 0.00 3.97
3793 5758 6.429078 CCAATGATCCCTGAATGTGTATGTAG 59.571 42.308 0.00 0.00 0.00 2.74
3828 5804 5.109210 TCAACTCTGTGTCACAACTACTTG 58.891 41.667 7.18 4.99 0.00 3.16
3836 5812 2.943033 GTCACAACTACTTGCACCACTT 59.057 45.455 0.00 0.00 0.00 3.16
3839 5815 3.627577 CACAACTACTTGCACCACTTTCT 59.372 43.478 0.00 0.00 0.00 2.52
3889 5876 2.356793 CGCCGCATGGAGAGGATC 60.357 66.667 0.00 0.00 40.01 3.36
3929 5956 2.972713 AGACACCTGTGTTCATGTACCT 59.027 45.455 4.16 0.00 45.05 3.08
3947 5975 6.524734 TGTACCTCGATATTCAGATGCAAAT 58.475 36.000 0.00 0.00 0.00 2.32
4108 6138 3.779444 ACACTGTCTATTCCTGGTCTCA 58.221 45.455 0.00 0.00 0.00 3.27
4109 6139 4.357325 ACACTGTCTATTCCTGGTCTCAT 58.643 43.478 0.00 0.00 0.00 2.90
4110 6140 4.161189 ACACTGTCTATTCCTGGTCTCATG 59.839 45.833 0.00 0.00 0.00 3.07
4111 6141 4.403752 CACTGTCTATTCCTGGTCTCATGA 59.596 45.833 0.00 0.00 0.00 3.07
4112 6142 4.648762 ACTGTCTATTCCTGGTCTCATGAG 59.351 45.833 17.07 17.07 0.00 2.90
4114 6144 4.646945 TGTCTATTCCTGGTCTCATGAGTC 59.353 45.833 21.92 16.39 0.00 3.36
4117 6148 3.900966 TTCCTGGTCTCATGAGTCATG 57.099 47.619 24.60 24.60 42.60 3.07
4254 6390 9.788889 AAATGATACTAGCATTGATGAGAATGA 57.211 29.630 0.30 0.00 36.20 2.57
4255 6391 9.438228 AATGATACTAGCATTGATGAGAATGAG 57.562 33.333 0.00 0.00 35.65 2.90
4261 6397 4.165565 AGCATTGATGAGAATGAGGAGGAA 59.834 41.667 0.00 0.00 35.65 3.36
4317 6458 5.559148 AGCTTTCAGCCTAGCTATACAAT 57.441 39.130 0.00 0.00 45.46 2.71
4318 6459 5.303971 AGCTTTCAGCCTAGCTATACAATG 58.696 41.667 0.00 0.00 45.46 2.82
4319 6460 5.070981 AGCTTTCAGCCTAGCTATACAATGA 59.929 40.000 0.00 0.00 45.46 2.57
4320 6461 5.407995 GCTTTCAGCCTAGCTATACAATGAG 59.592 44.000 0.00 0.00 36.40 2.90
4321 6462 6.485830 TTTCAGCCTAGCTATACAATGAGT 57.514 37.500 0.00 0.00 36.40 3.41
4417 8469 2.178273 GCCGTGGCGTCAAATTCC 59.822 61.111 0.00 0.00 0.00 3.01
4418 8470 2.332654 GCCGTGGCGTCAAATTCCT 61.333 57.895 0.00 0.00 0.00 3.36
4419 8471 1.501741 CCGTGGCGTCAAATTCCTG 59.498 57.895 0.00 0.00 0.00 3.86
4424 8476 1.243902 GGCGTCAAATTCCTGTTCCA 58.756 50.000 0.00 0.00 0.00 3.53
4668 8862 8.774586 AGATGTATATTCTTGTAATCGCAAACC 58.225 33.333 0.00 0.00 0.00 3.27
4670 8864 8.445275 TGTATATTCTTGTAATCGCAAACCAT 57.555 30.769 0.00 0.00 0.00 3.55
4671 8865 8.898761 TGTATATTCTTGTAATCGCAAACCATT 58.101 29.630 0.00 0.00 0.00 3.16
4675 8869 6.561737 TCTTGTAATCGCAAACCATTACAA 57.438 33.333 13.82 13.82 46.20 2.41
4678 8872 6.751514 TGTAATCGCAAACCATTACAAGAT 57.248 33.333 3.42 0.00 40.77 2.40
4679 8873 7.851387 TGTAATCGCAAACCATTACAAGATA 57.149 32.000 3.42 0.00 40.77 1.98
4680 8874 7.915508 TGTAATCGCAAACCATTACAAGATAG 58.084 34.615 3.42 0.00 40.77 2.08
4681 8875 7.766738 TGTAATCGCAAACCATTACAAGATAGA 59.233 33.333 3.42 0.00 40.77 1.98
4682 8876 7.807977 AATCGCAAACCATTACAAGATAGAT 57.192 32.000 0.00 0.00 0.00 1.98
4683 8877 6.603237 TCGCAAACCATTACAAGATAGATG 57.397 37.500 0.00 0.00 0.00 2.90
4684 8878 6.112734 TCGCAAACCATTACAAGATAGATGT 58.887 36.000 0.00 0.00 34.81 3.06
4719 8913 1.226746 CAAACGAAAAGACGAGGCCT 58.773 50.000 3.86 3.86 37.03 5.19
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
9 10 7.734942 TCAACCTATGTATCATATTGCTGTGA 58.265 34.615 0.00 0.00 0.00 3.58
22 23 1.692519 GGTCGCCCTCAACCTATGTAT 59.307 52.381 0.00 0.00 32.54 2.29
29 30 2.579684 CTAGCTGGTCGCCCTCAACC 62.580 65.000 0.00 0.00 40.39 3.77
35 36 2.512515 CTTGCTAGCTGGTCGCCC 60.513 66.667 17.23 0.00 40.39 6.13
126 127 2.359531 GGAGATTCGTCGGAGAAGATGT 59.640 50.000 0.00 0.00 45.63 3.06
163 164 3.445518 GAGGTCGATGATGCCGGCA 62.446 63.158 34.80 34.80 32.62 5.69
171 172 1.564818 ACAGAGGTAGGAGGTCGATGA 59.435 52.381 0.00 0.00 0.00 2.92
175 176 2.944349 GACTAACAGAGGTAGGAGGTCG 59.056 54.545 0.00 0.00 0.00 4.79
443 643 8.055181 ACTGGAGCATGAATTTAATAAAGGAGA 58.945 33.333 0.00 0.00 0.00 3.71
447 647 9.294030 GTTGACTGGAGCATGAATTTAATAAAG 57.706 33.333 0.00 0.00 0.00 1.85
448 648 9.023962 AGTTGACTGGAGCATGAATTTAATAAA 57.976 29.630 0.00 0.00 0.00 1.40
451 651 6.660521 TGAGTTGACTGGAGCATGAATTTAAT 59.339 34.615 0.00 0.00 0.00 1.40
453 653 5.559770 TGAGTTGACTGGAGCATGAATTTA 58.440 37.500 0.00 0.00 0.00 1.40
454 654 4.401022 TGAGTTGACTGGAGCATGAATTT 58.599 39.130 0.00 0.00 0.00 1.82
455 655 4.025040 TGAGTTGACTGGAGCATGAATT 57.975 40.909 0.00 0.00 0.00 2.17
456 656 3.708403 TGAGTTGACTGGAGCATGAAT 57.292 42.857 0.00 0.00 0.00 2.57
457 657 3.708403 ATGAGTTGACTGGAGCATGAA 57.292 42.857 0.00 0.00 0.00 2.57
458 658 3.515104 TGTATGAGTTGACTGGAGCATGA 59.485 43.478 0.00 0.00 0.00 3.07
460 660 4.558226 TTGTATGAGTTGACTGGAGCAT 57.442 40.909 0.00 0.00 0.00 3.79
461 661 4.350368 TTTGTATGAGTTGACTGGAGCA 57.650 40.909 0.00 0.00 0.00 4.26
462 662 4.757149 ACTTTTGTATGAGTTGACTGGAGC 59.243 41.667 0.00 0.00 0.00 4.70
463 663 5.409826 GGACTTTTGTATGAGTTGACTGGAG 59.590 44.000 0.00 0.00 0.00 3.86
464 664 5.163248 TGGACTTTTGTATGAGTTGACTGGA 60.163 40.000 0.00 0.00 0.00 3.86
465 665 5.063204 TGGACTTTTGTATGAGTTGACTGG 58.937 41.667 0.00 0.00 0.00 4.00
466 666 6.618287 TTGGACTTTTGTATGAGTTGACTG 57.382 37.500 0.00 0.00 0.00 3.51
467 667 6.828785 AGTTTGGACTTTTGTATGAGTTGACT 59.171 34.615 0.00 0.00 29.87 3.41
468 668 7.027778 AGTTTGGACTTTTGTATGAGTTGAC 57.972 36.000 0.00 0.00 29.87 3.18
470 670 9.398170 CATTAGTTTGGACTTTTGTATGAGTTG 57.602 33.333 0.00 0.00 37.33 3.16
471 671 8.576442 CCATTAGTTTGGACTTTTGTATGAGTT 58.424 33.333 0.00 0.00 39.25 3.01
476 676 6.663523 CCCTCCATTAGTTTGGACTTTTGTAT 59.336 38.462 0.00 0.00 40.90 2.29
477 677 6.007703 CCCTCCATTAGTTTGGACTTTTGTA 58.992 40.000 0.00 0.00 40.90 2.41
479 679 5.076873 TCCCTCCATTAGTTTGGACTTTTG 58.923 41.667 0.00 0.00 40.90 2.44
480 680 5.325239 CTCCCTCCATTAGTTTGGACTTTT 58.675 41.667 0.00 0.00 40.90 2.27
481 681 4.263949 CCTCCCTCCATTAGTTTGGACTTT 60.264 45.833 0.00 0.00 40.90 2.66
482 682 3.267031 CCTCCCTCCATTAGTTTGGACTT 59.733 47.826 0.00 0.00 40.90 3.01
483 683 2.846827 CCTCCCTCCATTAGTTTGGACT 59.153 50.000 0.00 0.00 40.90 3.85
485 685 1.564348 GCCTCCCTCCATTAGTTTGGA 59.436 52.381 0.00 0.00 43.56 3.53
486 686 1.747206 CGCCTCCCTCCATTAGTTTGG 60.747 57.143 0.00 0.00 38.18 3.28
487 687 1.668419 CGCCTCCCTCCATTAGTTTG 58.332 55.000 0.00 0.00 0.00 2.93
488 688 0.546598 CCGCCTCCCTCCATTAGTTT 59.453 55.000 0.00 0.00 0.00 2.66
489 689 1.345715 CCCGCCTCCCTCCATTAGTT 61.346 60.000 0.00 0.00 0.00 2.24
490 690 1.766461 CCCGCCTCCCTCCATTAGT 60.766 63.158 0.00 0.00 0.00 2.24
491 691 3.151906 CCCGCCTCCCTCCATTAG 58.848 66.667 0.00 0.00 0.00 1.73
492 692 3.168528 GCCCGCCTCCCTCCATTA 61.169 66.667 0.00 0.00 0.00 1.90
494 694 2.991167 ATAAGCCCGCCTCCCTCCAT 62.991 60.000 0.00 0.00 0.00 3.41
497 697 0.763035 TAAATAAGCCCGCCTCCCTC 59.237 55.000 0.00 0.00 0.00 4.30
498 698 0.765510 CTAAATAAGCCCGCCTCCCT 59.234 55.000 0.00 0.00 0.00 4.20
499 699 0.250770 CCTAAATAAGCCCGCCTCCC 60.251 60.000 0.00 0.00 0.00 4.30
501 701 0.889638 GGCCTAAATAAGCCCGCCTC 60.890 60.000 0.00 0.00 43.76 4.70
502 702 1.150764 GGCCTAAATAAGCCCGCCT 59.849 57.895 0.00 0.00 43.76 5.52
503 703 3.759544 GGCCTAAATAAGCCCGCC 58.240 61.111 0.00 0.00 43.76 6.13
508 708 4.762251 CCCATGTCTAAGGCCTAAATAAGC 59.238 45.833 5.16 0.00 0.00 3.09
509 709 6.187727 TCCCATGTCTAAGGCCTAAATAAG 57.812 41.667 5.16 0.00 0.00 1.73
510 710 6.520061 CGATCCCATGTCTAAGGCCTAAATAA 60.520 42.308 5.16 0.00 0.00 1.40
511 711 5.046591 CGATCCCATGTCTAAGGCCTAAATA 60.047 44.000 5.16 0.00 0.00 1.40
512 712 4.263068 CGATCCCATGTCTAAGGCCTAAAT 60.263 45.833 5.16 0.00 0.00 1.40
513 713 3.071023 CGATCCCATGTCTAAGGCCTAAA 59.929 47.826 5.16 0.00 0.00 1.85
514 714 2.632996 CGATCCCATGTCTAAGGCCTAA 59.367 50.000 5.16 0.00 0.00 2.69
515 715 2.158370 TCGATCCCATGTCTAAGGCCTA 60.158 50.000 5.16 0.00 0.00 3.93
516 716 1.051812 CGATCCCATGTCTAAGGCCT 58.948 55.000 0.00 0.00 0.00 5.19
517 717 1.048601 TCGATCCCATGTCTAAGGCC 58.951 55.000 0.00 0.00 0.00 5.19
518 718 2.037772 ACATCGATCCCATGTCTAAGGC 59.962 50.000 0.00 0.00 27.49 4.35
519 719 4.081972 CCTACATCGATCCCATGTCTAAGG 60.082 50.000 7.98 6.74 35.95 2.69
520 720 4.619394 GCCTACATCGATCCCATGTCTAAG 60.619 50.000 7.98 2.31 35.95 2.18
521 721 3.258372 GCCTACATCGATCCCATGTCTAA 59.742 47.826 7.98 0.00 35.95 2.10
522 722 2.826128 GCCTACATCGATCCCATGTCTA 59.174 50.000 7.98 0.00 35.95 2.59
523 723 1.620819 GCCTACATCGATCCCATGTCT 59.379 52.381 7.98 0.00 35.95 3.41
524 724 1.338200 GGCCTACATCGATCCCATGTC 60.338 57.143 7.98 0.00 35.95 3.06
525 725 0.687354 GGCCTACATCGATCCCATGT 59.313 55.000 0.00 9.36 38.13 3.21
526 726 0.390340 CGGCCTACATCGATCCCATG 60.390 60.000 0.00 0.00 0.00 3.66
527 727 0.832135 ACGGCCTACATCGATCCCAT 60.832 55.000 0.00 0.00 0.00 4.00
528 728 0.178984 TACGGCCTACATCGATCCCA 60.179 55.000 0.00 0.00 0.00 4.37
529 729 0.526662 CTACGGCCTACATCGATCCC 59.473 60.000 0.00 0.00 0.00 3.85
530 730 0.526662 CCTACGGCCTACATCGATCC 59.473 60.000 0.00 0.00 0.00 3.36
531 731 1.531423 TCCTACGGCCTACATCGATC 58.469 55.000 0.00 0.00 0.00 3.69
532 732 2.093106 GATCCTACGGCCTACATCGAT 58.907 52.381 0.00 0.00 0.00 3.59
533 733 1.073444 AGATCCTACGGCCTACATCGA 59.927 52.381 0.00 0.00 0.00 3.59
534 734 1.535833 AGATCCTACGGCCTACATCG 58.464 55.000 0.00 0.00 0.00 3.84
535 735 4.338379 AAAAGATCCTACGGCCTACATC 57.662 45.455 0.00 0.00 0.00 3.06
536 736 4.772886 AAAAAGATCCTACGGCCTACAT 57.227 40.909 0.00 0.00 0.00 2.29
537 737 5.881923 ATAAAAAGATCCTACGGCCTACA 57.118 39.130 0.00 0.00 0.00 2.74
538 738 7.563888 AAAATAAAAAGATCCTACGGCCTAC 57.436 36.000 0.00 0.00 0.00 3.18
539 739 9.856162 ATTAAAATAAAAAGATCCTACGGCCTA 57.144 29.630 0.00 0.00 0.00 3.93
540 740 8.762481 ATTAAAATAAAAAGATCCTACGGCCT 57.238 30.769 0.00 0.00 0.00 5.19
541 741 9.888878 GTATTAAAATAAAAAGATCCTACGGCC 57.111 33.333 0.00 0.00 0.00 6.13
553 753 9.843334 CCTGGCAACGTAGTATTAAAATAAAAA 57.157 29.630 0.00 0.00 45.00 1.94
554 754 8.460428 CCCTGGCAACGTAGTATTAAAATAAAA 58.540 33.333 0.00 0.00 45.00 1.52
555 755 7.611079 ACCCTGGCAACGTAGTATTAAAATAAA 59.389 33.333 0.00 0.00 45.00 1.40
556 756 7.111466 ACCCTGGCAACGTAGTATTAAAATAA 58.889 34.615 0.00 0.00 45.00 1.40
557 757 6.652053 ACCCTGGCAACGTAGTATTAAAATA 58.348 36.000 0.00 0.00 45.00 1.40
558 758 5.503002 ACCCTGGCAACGTAGTATTAAAAT 58.497 37.500 0.00 0.00 45.00 1.82
564 764 1.861982 AGACCCTGGCAACGTAGTAT 58.138 50.000 0.00 0.00 45.00 2.12
567 767 0.320374 TCAAGACCCTGGCAACGTAG 59.680 55.000 0.00 0.00 42.51 3.51
570 770 0.535102 AGTTCAAGACCCTGGCAACG 60.535 55.000 0.00 0.00 42.51 4.10
644 844 3.700038 TCCCTCTATCAGTTCGGACTTTC 59.300 47.826 0.00 0.00 32.54 2.62
692 893 2.505819 ACTATTACAGCTTCTGGGGGTG 59.494 50.000 0.00 0.00 35.51 4.61
734 935 1.873698 TACCGTTGTTCTCTTGGTGC 58.126 50.000 0.00 0.00 34.18 5.01
735 936 3.250040 CCTTTACCGTTGTTCTCTTGGTG 59.750 47.826 0.00 0.00 34.18 4.17
912 2813 3.570540 TCTCCAGGATGACCATCTGTAG 58.429 50.000 9.56 3.81 39.69 2.74
943 2847 6.307776 TGGTTTGTGGTCAAGTTGGATATTA 58.692 36.000 2.34 0.00 34.88 0.98
1075 2982 3.062042 CGTACCTGGAAAACTGTGTACC 58.938 50.000 0.00 0.00 0.00 3.34
1247 3154 4.288105 ACTCATCAACCATATCCTCCATCC 59.712 45.833 0.00 0.00 0.00 3.51
1356 3263 9.690913 TTCACTTTGGAAGATATCTGATTCAAT 57.309 29.630 5.86 0.00 0.00 2.57
1401 3308 0.244721 TCATCTCTGACAGGTGTGCG 59.755 55.000 1.81 0.00 34.39 5.34
1768 3681 2.892852 CAATGTTTGATGGACCACTGGT 59.107 45.455 0.00 0.00 39.44 4.00
2079 3993 2.155279 GACAAAAGCCTCAACTCCTCC 58.845 52.381 0.00 0.00 0.00 4.30
2237 4151 1.480954 TCCTTATGTGGTCGAGCCTTC 59.519 52.381 12.85 3.51 38.35 3.46
2362 4276 1.611977 CTCCGCCATCCATAGTCGTAA 59.388 52.381 0.00 0.00 0.00 3.18
2399 4313 0.403655 TTCTAATGTGCTGGCACCCA 59.596 50.000 20.80 5.87 45.63 4.51
2785 4716 2.124277 TCCGGAATCTTCTCGACTGA 57.876 50.000 0.00 0.00 0.00 3.41
2787 4718 1.067821 GCATCCGGAATCTTCTCGACT 59.932 52.381 9.01 0.00 0.00 4.18
2788 4719 1.067821 AGCATCCGGAATCTTCTCGAC 59.932 52.381 9.01 0.00 0.00 4.20
2815 4746 6.040391 CCCAAATGGCGGAGATTAAAAAGATA 59.960 38.462 0.00 0.00 0.00 1.98
3022 4957 2.357009 GGAAGCATACACCTCTTGCATG 59.643 50.000 0.00 0.00 38.84 4.06
3027 4962 4.141390 CCAATAGGGAAGCATACACCTCTT 60.141 45.833 0.00 0.00 40.01 2.85
3351 5293 4.985538 AGTTCTACTCCATGGCTTGAAAA 58.014 39.130 6.96 0.00 0.00 2.29
3401 5349 2.355513 GGCAAAGGATCTTCTCTCAGCA 60.356 50.000 0.00 0.00 0.00 4.41
3715 5663 2.031870 ACCAACAAGTTCAGGGCTTTC 58.968 47.619 0.00 0.00 0.00 2.62
3793 5758 0.736053 AGAGTTGAGAGCGATCGACC 59.264 55.000 21.57 9.26 34.59 4.79
3828 5804 7.148457 GGTGTTAGTAAATCTAGAAAGTGGTGC 60.148 40.741 0.00 0.00 0.00 5.01
3836 5812 7.103641 CCAGCAAGGTGTTAGTAAATCTAGAA 58.896 38.462 0.00 0.00 0.00 2.10
3839 5815 5.045869 AGCCAGCAAGGTGTTAGTAAATCTA 60.046 40.000 0.00 0.00 40.61 1.98
3954 5982 6.616947 CCTTGTTATTCGAAAGCCATAAACA 58.383 36.000 0.00 2.26 0.00 2.83
3984 6012 2.759538 ATCTTACGACACGAGCTAGC 57.240 50.000 6.62 6.62 0.00 3.42
3987 6015 3.570926 TTCAATCTTACGACACGAGCT 57.429 42.857 0.00 0.00 0.00 4.09
4089 6119 4.614475 TCATGAGACCAGGAATAGACAGT 58.386 43.478 0.00 0.00 29.21 3.55
4090 6120 4.648762 ACTCATGAGACCAGGAATAGACAG 59.351 45.833 29.27 0.00 32.24 3.51
4111 6141 4.276678 CACACAAATGGTTGAGTCATGACT 59.723 41.667 28.23 28.23 45.84 3.41
4112 6142 4.036734 ACACACAAATGGTTGAGTCATGAC 59.963 41.667 18.47 18.47 36.55 3.06
4114 6144 4.572985 ACACACAAATGGTTGAGTCATG 57.427 40.909 0.00 0.00 36.55 3.07
4117 6148 5.493133 TGTTACACACAAATGGTTGAGTC 57.507 39.130 0.00 0.00 36.55 3.36
4175 6311 9.234827 CTGAGAGTGAGATCTGTAGATGAATAT 57.765 37.037 0.00 0.00 34.37 1.28
4188 6324 3.815856 TCCATTGCTGAGAGTGAGATC 57.184 47.619 0.00 0.00 0.00 2.75
4249 6385 4.227197 TGGACCTCTATTCCTCCTCATTC 58.773 47.826 0.00 0.00 33.84 2.67
4253 6389 5.005628 AGTATGGACCTCTATTCCTCCTC 57.994 47.826 0.00 0.00 33.84 3.71
4254 6390 5.151454 CAAGTATGGACCTCTATTCCTCCT 58.849 45.833 0.00 0.00 33.84 3.69
4255 6391 4.262678 GCAAGTATGGACCTCTATTCCTCC 60.263 50.000 0.00 0.00 33.84 4.30
4261 6397 7.118723 TGAAAAATGCAAGTATGGACCTCTAT 58.881 34.615 0.00 0.00 0.00 1.98
4317 6458 7.997773 ACTAGTAGTTGATTGACACTACTCA 57.002 36.000 13.85 3.17 40.37 3.41
4318 6459 9.165035 ACTACTAGTAGTTGATTGACACTACTC 57.835 37.037 26.61 0.00 43.35 2.59
4418 8470 4.261572 GCAATCTTAGCAACAACTGGAACA 60.262 41.667 0.00 0.00 0.00 3.18
4419 8471 4.229876 GCAATCTTAGCAACAACTGGAAC 58.770 43.478 0.00 0.00 0.00 3.62
4424 8476 5.391310 CGATTCTGCAATCTTAGCAACAACT 60.391 40.000 0.00 0.00 42.17 3.16
4518 8576 2.565841 GTCACCTGCCAATGTCCTATC 58.434 52.381 0.00 0.00 0.00 2.08
4689 8883 6.256104 TCGTCTTTTCGTTTGTGATTACAAGA 59.744 34.615 3.07 0.00 46.63 3.02
4690 8884 6.415702 TCGTCTTTTCGTTTGTGATTACAAG 58.584 36.000 3.07 0.00 46.63 3.16
4692 8886 5.050634 CCTCGTCTTTTCGTTTGTGATTACA 60.051 40.000 0.00 0.00 34.31 2.41
4693 8887 5.371629 CCTCGTCTTTTCGTTTGTGATTAC 58.628 41.667 0.00 0.00 0.00 1.89
4695 8889 3.303791 GCCTCGTCTTTTCGTTTGTGATT 60.304 43.478 0.00 0.00 0.00 2.57
4696 8890 2.223377 GCCTCGTCTTTTCGTTTGTGAT 59.777 45.455 0.00 0.00 0.00 3.06
4697 8891 1.595794 GCCTCGTCTTTTCGTTTGTGA 59.404 47.619 0.00 0.00 0.00 3.58
4698 8892 1.333791 GGCCTCGTCTTTTCGTTTGTG 60.334 52.381 0.00 0.00 0.00 3.33
4699 8893 0.942252 GGCCTCGTCTTTTCGTTTGT 59.058 50.000 0.00 0.00 0.00 2.83
4700 8894 1.194772 GAGGCCTCGTCTTTTCGTTTG 59.805 52.381 19.06 0.00 0.00 2.93
4701 8895 1.509703 GAGGCCTCGTCTTTTCGTTT 58.490 50.000 19.06 0.00 0.00 3.60
4702 8896 0.666577 CGAGGCCTCGTCTTTTCGTT 60.667 55.000 40.77 0.00 46.99 3.85
4703 8897 1.080705 CGAGGCCTCGTCTTTTCGT 60.081 57.895 40.77 0.00 46.99 3.85
4704 8898 3.768632 CGAGGCCTCGTCTTTTCG 58.231 61.111 40.77 18.92 46.99 3.46


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.