Multiple sequence alignment - TraesCS2D01G014400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2D01G014400 chr2D 100.000 5523 0 0 1 5523 7061908 7067430 0.000000e+00 10200.0
1 TraesCS2D01G014400 chr2D 84.564 1639 173 43 2861 4467 7091652 7090062 0.000000e+00 1552.0
2 TraesCS2D01G014400 chr2D 84.660 1545 159 42 3017 4535 7002277 7003769 0.000000e+00 1469.0
3 TraesCS2D01G014400 chr2D 93.932 857 52 0 1 857 641019276 641018420 0.000000e+00 1295.0
4 TraesCS2D01G014400 chr2D 93.072 866 52 5 1 864 204123363 204124222 0.000000e+00 1260.0
5 TraesCS2D01G014400 chr2D 80.999 1642 222 45 2864 4467 7073793 7072204 0.000000e+00 1221.0
6 TraesCS2D01G014400 chr2D 80.396 1668 220 56 2854 4463 7086929 7085311 0.000000e+00 1170.0
7 TraesCS2D01G014400 chr2D 92.329 365 24 4 1876 2238 7001637 7001999 2.950000e-142 516.0
8 TraesCS2D01G014400 chr2D 92.920 339 24 0 1896 2234 7092269 7091931 1.380000e-135 494.0
9 TraesCS2D01G014400 chr2D 86.957 368 42 3 1872 2238 7074365 7074003 5.150000e-110 409.0
10 TraesCS2D01G014400 chr2D 85.000 380 37 15 1017 1382 7000478 7000851 8.740000e-98 368.0
11 TraesCS2D01G014400 chr2D 84.946 279 26 9 1063 1336 7093075 7092808 9.120000e-68 268.0
12 TraesCS2D01G014400 chr2D 78.329 383 48 18 962 1336 7074958 7074603 1.210000e-51 215.0
13 TraesCS2D01G014400 chr2D 92.308 78 5 1 1656 1733 7092522 7092446 5.850000e-20 110.0
14 TraesCS2D01G014400 chr2D 100.000 43 0 0 2905 2947 7002187 7002229 4.590000e-11 80.5
15 TraesCS2D01G014400 chr2D 83.529 85 10 3 1577 1657 7001239 7001323 5.930000e-10 76.8
16 TraesCS2D01G014400 chr2B 88.508 1897 139 37 2756 4611 2346333 2344475 0.000000e+00 2222.0
17 TraesCS2D01G014400 chr2B 83.457 1753 198 52 2747 4467 2527775 2526083 0.000000e+00 1546.0
18 TraesCS2D01G014400 chr2B 84.742 1396 148 35 3094 4467 2131345 2132697 0.000000e+00 1338.0
19 TraesCS2D01G014400 chr2B 82.830 1555 189 43 3017 4535 2405850 2404338 0.000000e+00 1321.0
20 TraesCS2D01G014400 chr2B 80.134 1641 235 46 2865 4467 2236488 2238075 0.000000e+00 1140.0
21 TraesCS2D01G014400 chr2B 79.939 1640 240 46 2865 4467 2503047 2501460 0.000000e+00 1123.0
22 TraesCS2D01G014400 chr2B 79.569 1669 231 62 2854 4463 2219213 2220830 0.000000e+00 1092.0
23 TraesCS2D01G014400 chr2B 87.950 888 72 11 3740 4612 2269735 2268868 0.000000e+00 1014.0
24 TraesCS2D01G014400 chr2B 92.112 393 29 2 1860 2251 2346961 2346570 2.250000e-153 553.0
25 TraesCS2D01G014400 chr2B 90.300 433 8 12 5114 5523 2268883 2268462 2.260000e-148 536.0
26 TraesCS2D01G014400 chr2B 86.089 496 42 14 857 1336 2348134 2347650 4.940000e-140 508.0
27 TraesCS2D01G014400 chr2B 91.460 363 29 1 1878 2238 2406466 2406104 1.070000e-136 497.0
28 TraesCS2D01G014400 chr2B 82.897 573 68 18 3912 4463 2511800 2511237 6.430000e-134 488.0
29 TraesCS2D01G014400 chr2B 90.087 343 27 6 1895 2234 2528302 2527964 6.570000e-119 438.0
30 TraesCS2D01G014400 chr2B 91.638 287 19 4 1561 1842 2347414 2347128 5.190000e-105 392.0
31 TraesCS2D01G014400 chr2B 84.661 339 30 10 1017 1336 2407532 2407197 8.930000e-83 318.0
32 TraesCS2D01G014400 chr2B 91.429 105 9 0 1232 1336 2523231 2523127 1.600000e-30 145.0
33 TraesCS2D01G014400 chr2A 83.722 1843 191 61 2744 4534 5310280 5312065 0.000000e+00 1640.0
34 TraesCS2D01G014400 chr2A 84.685 1541 165 38 2953 4467 5527648 5526153 0.000000e+00 1472.0
35 TraesCS2D01G014400 chr2A 84.189 1480 157 39 3017 4467 5189963 5191394 0.000000e+00 1365.0
36 TraesCS2D01G014400 chr2A 80.084 1662 234 51 2854 4463 5484930 5483314 0.000000e+00 1146.0
37 TraesCS2D01G014400 chr2A 91.133 406 29 5 1852 2251 5309560 5309964 1.350000e-150 544.0
38 TraesCS2D01G014400 chr2A 91.406 384 27 5 1853 2234 5528396 5528017 6.340000e-144 521.0
39 TraesCS2D01G014400 chr2A 90.657 396 27 9 1847 2238 5189233 5189622 8.200000e-143 518.0
40 TraesCS2D01G014400 chr2A 88.757 338 22 10 1533 1860 5309159 5309490 3.100000e-107 399.0
41 TraesCS2D01G014400 chr2A 88.889 333 20 7 1017 1336 5187979 5188307 1.440000e-105 394.0
42 TraesCS2D01G014400 chr2A 87.633 283 26 6 1061 1336 5308446 5308726 2.480000e-83 320.0
43 TraesCS2D01G014400 chr2A 82.216 388 27 20 962 1336 5529390 5529032 4.180000e-76 296.0
44 TraesCS2D01G014400 chr2A 82.273 220 27 9 1120 1336 5486846 5486636 4.400000e-41 180.0
45 TraesCS2D01G014400 chr2A 82.069 145 11 5 1605 1735 5528675 5528532 5.850000e-20 110.0
46 TraesCS2D01G014400 chr2A 91.667 60 1 3 857 912 5308274 5308333 4.590000e-11 80.5
47 TraesCS2D01G014400 chr2A 97.436 39 1 0 857 895 5187843 5187881 3.570000e-07 67.6
48 TraesCS2D01G014400 chr4D 94.206 863 47 3 1 862 457071236 457072096 0.000000e+00 1314.0
49 TraesCS2D01G014400 chr4D 96.667 510 12 1 4607 5111 489334506 489335015 0.000000e+00 843.0
50 TraesCS2D01G014400 chr6D 93.779 868 52 2 1 866 392268859 392267992 0.000000e+00 1303.0
51 TraesCS2D01G014400 chr6D 93.248 859 55 2 1 857 97230467 97231324 0.000000e+00 1262.0
52 TraesCS2D01G014400 chr6D 97.661 513 5 2 4607 5112 55132114 55132626 0.000000e+00 874.0
53 TraesCS2D01G014400 chr5D 93.939 858 49 3 1 857 327217226 327216371 0.000000e+00 1293.0
54 TraesCS2D01G014400 chr5D 93.627 863 52 2 1 861 381805575 381806436 0.000000e+00 1286.0
55 TraesCS2D01G014400 chr5D 98.242 512 3 1 4607 5112 536794859 536794348 0.000000e+00 891.0
56 TraesCS2D01G014400 chr5D 97.070 512 9 1 4607 5112 565310302 565310813 0.000000e+00 857.0
57 TraesCS2D01G014400 chr7D 93.932 857 48 3 3 857 565438083 565437229 0.000000e+00 1291.0
58 TraesCS2D01G014400 chr7D 97.505 521 5 3 4607 5120 538821527 538821008 0.000000e+00 883.0
59 TraesCS2D01G014400 chr7D 97.652 511 4 3 4607 5110 69053458 69052949 0.000000e+00 870.0
60 TraesCS2D01G014400 chr7D 97.461 512 7 1 4607 5112 162671808 162672319 0.000000e+00 869.0
61 TraesCS2D01G014400 chr3D 93.303 866 55 2 1 864 362065868 362065004 0.000000e+00 1275.0
62 TraesCS2D01G014400 chr1D 97.466 513 7 1 4607 5113 310782788 310782276 0.000000e+00 870.0
63 TraesCS2D01G014400 chr1D 97.461 512 7 1 4607 5112 291577151 291577662 0.000000e+00 869.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2D01G014400 chr2D 7061908 7067430 5522 False 10200.000000 10200 100.000000 1 5523 1 chr2D.!!$F1 5522
1 TraesCS2D01G014400 chr2D 641018420 641019276 856 True 1295.000000 1295 93.932000 1 857 1 chr2D.!!$R1 856
2 TraesCS2D01G014400 chr2D 204123363 204124222 859 False 1260.000000 1260 93.072000 1 864 1 chr2D.!!$F2 863
3 TraesCS2D01G014400 chr2D 7085311 7093075 7764 True 718.800000 1552 87.026800 1063 4467 5 chr2D.!!$R3 3404
4 TraesCS2D01G014400 chr2D 7072204 7074958 2754 True 615.000000 1221 82.095000 962 4467 3 chr2D.!!$R2 3505
5 TraesCS2D01G014400 chr2D 7000478 7003769 3291 False 502.060000 1469 89.103600 1017 4535 5 chr2D.!!$F3 3518
6 TraesCS2D01G014400 chr2B 2131345 2132697 1352 False 1338.000000 1338 84.742000 3094 4467 1 chr2B.!!$F1 1373
7 TraesCS2D01G014400 chr2B 2236488 2238075 1587 False 1140.000000 1140 80.134000 2865 4467 1 chr2B.!!$F3 1602
8 TraesCS2D01G014400 chr2B 2501460 2503047 1587 True 1123.000000 1123 79.939000 2865 4467 1 chr2B.!!$R1 1602
9 TraesCS2D01G014400 chr2B 2219213 2220830 1617 False 1092.000000 1092 79.569000 2854 4463 1 chr2B.!!$F2 1609
10 TraesCS2D01G014400 chr2B 2344475 2348134 3659 True 918.750000 2222 89.586750 857 4611 4 chr2B.!!$R4 3754
11 TraesCS2D01G014400 chr2B 2268462 2269735 1273 True 775.000000 1014 89.125000 3740 5523 2 chr2B.!!$R3 1783
12 TraesCS2D01G014400 chr2B 2404338 2407532 3194 True 712.000000 1321 86.317000 1017 4535 3 chr2B.!!$R5 3518
13 TraesCS2D01G014400 chr2B 2523127 2528302 5175 True 709.666667 1546 88.324333 1232 4467 3 chr2B.!!$R6 3235
14 TraesCS2D01G014400 chr2B 2511237 2511800 563 True 488.000000 488 82.897000 3912 4463 1 chr2B.!!$R2 551
15 TraesCS2D01G014400 chr2A 5483314 5486846 3532 True 663.000000 1146 81.178500 1120 4463 2 chr2A.!!$R1 3343
16 TraesCS2D01G014400 chr2A 5526153 5529390 3237 True 599.750000 1472 85.094000 962 4467 4 chr2A.!!$R2 3505
17 TraesCS2D01G014400 chr2A 5308274 5312065 3791 False 596.700000 1640 88.582400 857 4534 5 chr2A.!!$F2 3677
18 TraesCS2D01G014400 chr2A 5187843 5191394 3551 False 586.150000 1365 90.292750 857 4467 4 chr2A.!!$F1 3610
19 TraesCS2D01G014400 chr4D 457071236 457072096 860 False 1314.000000 1314 94.206000 1 862 1 chr4D.!!$F1 861
20 TraesCS2D01G014400 chr4D 489334506 489335015 509 False 843.000000 843 96.667000 4607 5111 1 chr4D.!!$F2 504
21 TraesCS2D01G014400 chr6D 392267992 392268859 867 True 1303.000000 1303 93.779000 1 866 1 chr6D.!!$R1 865
22 TraesCS2D01G014400 chr6D 97230467 97231324 857 False 1262.000000 1262 93.248000 1 857 1 chr6D.!!$F2 856
23 TraesCS2D01G014400 chr6D 55132114 55132626 512 False 874.000000 874 97.661000 4607 5112 1 chr6D.!!$F1 505
24 TraesCS2D01G014400 chr5D 327216371 327217226 855 True 1293.000000 1293 93.939000 1 857 1 chr5D.!!$R1 856
25 TraesCS2D01G014400 chr5D 381805575 381806436 861 False 1286.000000 1286 93.627000 1 861 1 chr5D.!!$F1 860
26 TraesCS2D01G014400 chr5D 536794348 536794859 511 True 891.000000 891 98.242000 4607 5112 1 chr5D.!!$R2 505
27 TraesCS2D01G014400 chr5D 565310302 565310813 511 False 857.000000 857 97.070000 4607 5112 1 chr5D.!!$F2 505
28 TraesCS2D01G014400 chr7D 565437229 565438083 854 True 1291.000000 1291 93.932000 3 857 1 chr7D.!!$R3 854
29 TraesCS2D01G014400 chr7D 538821008 538821527 519 True 883.000000 883 97.505000 4607 5120 1 chr7D.!!$R2 513
30 TraesCS2D01G014400 chr7D 69052949 69053458 509 True 870.000000 870 97.652000 4607 5110 1 chr7D.!!$R1 503
31 TraesCS2D01G014400 chr7D 162671808 162672319 511 False 869.000000 869 97.461000 4607 5112 1 chr7D.!!$F1 505
32 TraesCS2D01G014400 chr3D 362065004 362065868 864 True 1275.000000 1275 93.303000 1 864 1 chr3D.!!$R1 863
33 TraesCS2D01G014400 chr1D 310782276 310782788 512 True 870.000000 870 97.466000 4607 5113 1 chr1D.!!$R1 506
34 TraesCS2D01G014400 chr1D 291577151 291577662 511 False 869.000000 869 97.461000 4607 5112 1 chr1D.!!$F1 505

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
945 970 1.079256 CCTCCTCCTCTGGTGTGGA 59.921 63.158 0.0 0.0 34.96 4.02 F
2341 4174 0.179065 TCTCAATGATGCAGAGGCCG 60.179 55.000 0.0 0.0 40.13 6.13 F
2373 4206 0.034896 TCCTTTCCGACACAGCCTTC 59.965 55.000 0.0 0.0 0.00 3.46 F
2810 4676 0.173029 AGACAGCATCTCTCTGCACG 59.827 55.000 0.0 0.0 44.77 5.34 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2354 4187 0.034896 GAAGGCTGTGTCGGAAAGGA 59.965 55.000 0.00 0.0 0.00 3.36 R
3172 5121 0.179059 GCTTCTTCCTAGCCTGGAGC 60.179 60.000 0.00 0.0 44.25 4.70 R
4290 11118 3.470645 AACACCGAAGCTGTTCTTAGT 57.529 42.857 0.00 0.0 34.56 2.24 R
4585 11453 2.229784 GTGAATCTTGTGGCCTTCCTTG 59.770 50.000 3.32 0.0 0.00 3.61 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
108 109 1.966451 CCCAGAGAAACGGGTGTGC 60.966 63.158 0.00 0.00 37.70 4.57
128 129 2.975799 GTCGTGCCTTGGCGGAAA 60.976 61.111 7.18 0.00 33.16 3.13
284 285 1.865788 ATGGCGTGCGCTTTGTTGAT 61.866 50.000 16.21 0.00 41.60 2.57
500 502 2.038557 CCTTCTTCTTCACCTTTCCGGA 59.961 50.000 0.00 0.00 36.31 5.14
699 703 4.007940 GCGCGCTGTCCGTTTCAA 62.008 61.111 26.67 0.00 39.71 2.69
774 780 1.947456 GACAAAAGTCCGTTTGCTCCT 59.053 47.619 5.75 0.00 41.33 3.69
945 970 1.079256 CCTCCTCCTCTGGTGTGGA 59.921 63.158 0.00 0.00 34.96 4.02
956 981 2.818169 GGTGTGGAGTGTGGCCTCA 61.818 63.158 3.32 2.96 32.91 3.86
1002 1036 1.415659 CCTCTGCCTAACTCATCCAGG 59.584 57.143 0.00 0.00 0.00 4.45
1004 1038 2.102252 CTCTGCCTAACTCATCCAGGAC 59.898 54.545 0.00 0.00 0.00 3.85
1014 1048 1.699083 TCATCCAGGACACAAGCAAGA 59.301 47.619 0.00 0.00 0.00 3.02
1015 1049 2.082231 CATCCAGGACACAAGCAAGAG 58.918 52.381 0.00 0.00 0.00 2.85
1030 1079 2.222911 GCAAGAGAGAGCAACACTTGTC 59.777 50.000 0.00 0.00 39.69 3.18
1073 1133 1.744741 GCTCTGCCTGCCTCTTGAC 60.745 63.158 0.00 0.00 0.00 3.18
1199 1286 3.921767 CTGCTGCGCTGGAACGAGA 62.922 63.158 16.47 0.00 34.06 4.04
1204 1291 1.139734 GCGCTGGAACGAGATGAGA 59.860 57.895 0.00 0.00 34.06 3.27
1228 1324 2.373707 CCAGAGGAGGAAGCAGGGG 61.374 68.421 0.00 0.00 0.00 4.79
1230 1326 2.285743 GAGGAGGAAGCAGGGGGT 60.286 66.667 0.00 0.00 0.00 4.95
1336 1432 1.251527 ACAGGAGGCTCAGGTACGTG 61.252 60.000 17.69 9.30 0.00 4.49
1337 1433 0.965866 CAGGAGGCTCAGGTACGTGA 60.966 60.000 17.69 16.81 0.00 4.35
1339 1435 1.136984 GAGGCTCAGGTACGTGACG 59.863 63.158 14.05 2.24 0.00 4.35
1351 1471 2.167918 GTGACGCGTTTGCTCGAC 59.832 61.111 15.53 0.00 39.65 4.20
1363 1491 0.673333 TGCTCGACGGTGATGCATTT 60.673 50.000 0.00 0.00 0.00 2.32
1365 1493 1.791555 GCTCGACGGTGATGCATTTTG 60.792 52.381 0.00 0.00 0.00 2.44
1366 1494 1.731709 CTCGACGGTGATGCATTTTGA 59.268 47.619 0.00 0.00 0.00 2.69
1382 1510 1.325355 TTGACGTCTTCTTCCTCGGT 58.675 50.000 17.92 0.00 0.00 4.69
1384 1512 1.268899 TGACGTCTTCTTCCTCGGTTC 59.731 52.381 17.92 0.00 0.00 3.62
1403 1531 2.046892 CCGGCTGTCTGGTCCTTG 60.047 66.667 0.00 0.00 33.91 3.61
1404 1532 2.046892 CGGCTGTCTGGTCCTTGG 60.047 66.667 0.00 0.00 0.00 3.61
1405 1533 2.360475 GGCTGTCTGGTCCTTGGC 60.360 66.667 0.00 0.00 0.00 4.52
1410 1651 0.842030 TGTCTGGTCCTTGGCTCCAT 60.842 55.000 0.00 0.00 0.00 3.41
1415 1656 1.598701 GGTCCTTGGCTCCATGTTGC 61.599 60.000 0.00 0.00 0.00 4.17
1433 1687 0.249031 GCTTGGTTTGTGCTGTGGAC 60.249 55.000 0.00 0.00 0.00 4.02
1441 1695 2.121291 TGTGCTGTGGACAACTCAAA 57.879 45.000 0.00 0.00 0.00 2.69
1452 1715 3.077359 GACAACTCAAACTGGAGATGGG 58.923 50.000 5.62 0.00 40.73 4.00
1535 2031 3.243873 CGCTCTGGCTGATGGAGTATTTA 60.244 47.826 0.00 0.00 36.09 1.40
1546 2042 9.943163 GCTGATGGAGTATTTAAAAGAGATTTC 57.057 33.333 0.00 0.00 32.27 2.17
1592 2401 4.442706 AGTTATTCCTGCCTACACGAATG 58.557 43.478 0.00 0.00 34.60 2.67
1702 2548 0.532640 AACACACGCTCATCACTGCA 60.533 50.000 0.00 0.00 0.00 4.41
1715 2561 1.108727 CACTGCACCAGCTCCCAAAA 61.109 55.000 0.00 0.00 42.74 2.44
1716 2562 0.825010 ACTGCACCAGCTCCCAAAAG 60.825 55.000 0.00 0.00 42.74 2.27
1773 2630 6.716173 TCAAAAGAGAAACATCCACATCATGA 59.284 34.615 0.00 0.00 0.00 3.07
1937 3697 1.375523 GTTCCGGACGCACATCCTT 60.376 57.895 1.83 0.00 36.52 3.36
1988 3748 2.892425 CTCAACCGCCGGATGCTC 60.892 66.667 11.71 0.00 38.05 4.26
2067 3827 4.036804 GCCGCAACAACATCGCCA 62.037 61.111 0.00 0.00 0.00 5.69
2163 3923 0.397816 CCTCCTCCCCAAGATCGACT 60.398 60.000 0.00 0.00 0.00 4.18
2164 3924 0.749649 CTCCTCCCCAAGATCGACTG 59.250 60.000 0.00 0.00 0.00 3.51
2168 3928 0.984230 TCCCCAAGATCGACTGCTTT 59.016 50.000 0.00 0.00 0.00 3.51
2253 4013 3.808174 GGTCAGTACACTGTCTTCAAACC 59.192 47.826 9.11 4.23 44.12 3.27
2263 4061 3.750371 TGTCTTCAAACCCCTGTACATG 58.250 45.455 0.00 0.00 0.00 3.21
2265 4063 3.502211 GTCTTCAAACCCCTGTACATGTG 59.498 47.826 9.11 0.00 0.00 3.21
2298 4131 3.183754 CATGTCGGAGTACGTTAATGCA 58.816 45.455 0.00 0.00 44.69 3.96
2300 4133 3.651206 TGTCGGAGTACGTTAATGCAAA 58.349 40.909 0.00 0.00 44.69 3.68
2303 4136 3.676172 TCGGAGTACGTTAATGCAAACAG 59.324 43.478 0.00 0.00 44.69 3.16
2309 4142 6.392354 AGTACGTTAATGCAAACAGCTACTA 58.608 36.000 0.00 0.00 45.94 1.82
2312 4145 4.630069 CGTTAATGCAAACAGCTACTACCT 59.370 41.667 0.00 0.00 45.94 3.08
2313 4146 5.220416 CGTTAATGCAAACAGCTACTACCTC 60.220 44.000 0.00 0.00 45.94 3.85
2314 4147 4.559862 AATGCAAACAGCTACTACCTCT 57.440 40.909 0.00 0.00 45.94 3.69
2315 4148 3.319137 TGCAAACAGCTACTACCTCTG 57.681 47.619 0.00 0.00 45.94 3.35
2317 4150 3.254892 GCAAACAGCTACTACCTCTGTC 58.745 50.000 0.00 0.00 39.86 3.51
2319 4152 4.739195 CAAACAGCTACTACCTCTGTCTC 58.261 47.826 0.00 0.00 39.86 3.36
2320 4153 3.007473 ACAGCTACTACCTCTGTCTCC 57.993 52.381 0.00 0.00 36.42 3.71
2321 4154 2.578940 ACAGCTACTACCTCTGTCTCCT 59.421 50.000 0.00 0.00 36.42 3.69
2325 4158 3.881089 GCTACTACCTCTGTCTCCTTCTC 59.119 52.174 0.00 0.00 0.00 2.87
2326 4159 4.626771 GCTACTACCTCTGTCTCCTTCTCA 60.627 50.000 0.00 0.00 0.00 3.27
2327 4160 4.390129 ACTACCTCTGTCTCCTTCTCAA 57.610 45.455 0.00 0.00 0.00 3.02
2328 4161 4.941713 ACTACCTCTGTCTCCTTCTCAAT 58.058 43.478 0.00 0.00 0.00 2.57
2329 4162 4.709397 ACTACCTCTGTCTCCTTCTCAATG 59.291 45.833 0.00 0.00 0.00 2.82
2330 4163 3.784178 ACCTCTGTCTCCTTCTCAATGA 58.216 45.455 0.00 0.00 0.00 2.57
2331 4164 4.360889 ACCTCTGTCTCCTTCTCAATGAT 58.639 43.478 0.00 0.00 0.00 2.45
2332 4165 4.161942 ACCTCTGTCTCCTTCTCAATGATG 59.838 45.833 0.00 0.00 0.00 3.07
2337 4170 4.121317 GTCTCCTTCTCAATGATGCAGAG 58.879 47.826 0.00 0.00 0.00 3.35
2338 4171 3.134262 TCTCCTTCTCAATGATGCAGAGG 59.866 47.826 0.00 0.00 0.00 3.69
2339 4172 1.948145 CCTTCTCAATGATGCAGAGGC 59.052 52.381 0.00 0.00 41.68 4.70
2340 4173 1.948145 CTTCTCAATGATGCAGAGGCC 59.052 52.381 0.00 0.00 40.13 5.19
2341 4174 0.179065 TCTCAATGATGCAGAGGCCG 60.179 55.000 0.00 0.00 40.13 6.13
2342 4175 1.783031 CTCAATGATGCAGAGGCCGC 61.783 60.000 0.00 0.00 40.13 6.53
2343 4176 2.898840 AATGATGCAGAGGCCGCG 60.899 61.111 0.00 0.00 40.13 6.46
2344 4177 4.923942 ATGATGCAGAGGCCGCGG 62.924 66.667 24.05 24.05 40.13 6.46
2350 4183 4.697756 CAGAGGCCGCGGGTTTCA 62.698 66.667 29.38 0.00 0.00 2.69
2351 4184 3.948719 AGAGGCCGCGGGTTTCAA 61.949 61.111 29.38 0.00 0.00 2.69
2352 4185 3.733960 GAGGCCGCGGGTTTCAAC 61.734 66.667 29.38 7.82 0.00 3.18
2363 4196 2.265589 GGTTTCAACCTCCTTTCCGA 57.734 50.000 1.08 0.00 45.75 4.55
2364 4197 1.878088 GGTTTCAACCTCCTTTCCGAC 59.122 52.381 1.08 0.00 45.75 4.79
2365 4198 2.567985 GTTTCAACCTCCTTTCCGACA 58.432 47.619 0.00 0.00 0.00 4.35
2366 4199 2.249844 TTCAACCTCCTTTCCGACAC 57.750 50.000 0.00 0.00 0.00 3.67
2367 4200 1.124780 TCAACCTCCTTTCCGACACA 58.875 50.000 0.00 0.00 0.00 3.72
2368 4201 1.070134 TCAACCTCCTTTCCGACACAG 59.930 52.381 0.00 0.00 0.00 3.66
2369 4202 0.250338 AACCTCCTTTCCGACACAGC 60.250 55.000 0.00 0.00 0.00 4.40
2370 4203 1.376037 CCTCCTTTCCGACACAGCC 60.376 63.158 0.00 0.00 0.00 4.85
2371 4204 1.674057 CTCCTTTCCGACACAGCCT 59.326 57.895 0.00 0.00 0.00 4.58
2372 4205 0.035458 CTCCTTTCCGACACAGCCTT 59.965 55.000 0.00 0.00 0.00 4.35
2373 4206 0.034896 TCCTTTCCGACACAGCCTTC 59.965 55.000 0.00 0.00 0.00 3.46
2374 4207 0.250295 CCTTTCCGACACAGCCTTCA 60.250 55.000 0.00 0.00 0.00 3.02
2375 4208 1.611673 CCTTTCCGACACAGCCTTCAT 60.612 52.381 0.00 0.00 0.00 2.57
2376 4209 1.734465 CTTTCCGACACAGCCTTCATC 59.266 52.381 0.00 0.00 0.00 2.92
2377 4210 0.976641 TTCCGACACAGCCTTCATCT 59.023 50.000 0.00 0.00 0.00 2.90
2378 4211 0.532573 TCCGACACAGCCTTCATCTC 59.467 55.000 0.00 0.00 0.00 2.75
2379 4212 0.460987 CCGACACAGCCTTCATCTCC 60.461 60.000 0.00 0.00 0.00 3.71
2380 4213 0.534412 CGACACAGCCTTCATCTCCT 59.466 55.000 0.00 0.00 0.00 3.69
2381 4214 1.066573 CGACACAGCCTTCATCTCCTT 60.067 52.381 0.00 0.00 0.00 3.36
2382 4215 2.166459 CGACACAGCCTTCATCTCCTTA 59.834 50.000 0.00 0.00 0.00 2.69
2383 4216 3.181471 CGACACAGCCTTCATCTCCTTAT 60.181 47.826 0.00 0.00 0.00 1.73
2384 4217 4.376146 GACACAGCCTTCATCTCCTTATC 58.624 47.826 0.00 0.00 0.00 1.75
2385 4218 3.135530 ACACAGCCTTCATCTCCTTATCC 59.864 47.826 0.00 0.00 0.00 2.59
2386 4219 3.135348 CACAGCCTTCATCTCCTTATCCA 59.865 47.826 0.00 0.00 0.00 3.41
2387 4220 3.390639 ACAGCCTTCATCTCCTTATCCAG 59.609 47.826 0.00 0.00 0.00 3.86
2388 4221 3.390639 CAGCCTTCATCTCCTTATCCAGT 59.609 47.826 0.00 0.00 0.00 4.00
2389 4222 3.645687 AGCCTTCATCTCCTTATCCAGTC 59.354 47.826 0.00 0.00 0.00 3.51
2390 4223 3.244387 GCCTTCATCTCCTTATCCAGTCC 60.244 52.174 0.00 0.00 0.00 3.85
2391 4224 3.006323 CCTTCATCTCCTTATCCAGTCCG 59.994 52.174 0.00 0.00 0.00 4.79
2392 4225 3.314307 TCATCTCCTTATCCAGTCCGT 57.686 47.619 0.00 0.00 0.00 4.69
2393 4226 4.448720 TCATCTCCTTATCCAGTCCGTA 57.551 45.455 0.00 0.00 0.00 4.02
2394 4227 4.999310 TCATCTCCTTATCCAGTCCGTAT 58.001 43.478 0.00 0.00 0.00 3.06
2398 4231 5.071370 TCTCCTTATCCAGTCCGTATTCTC 58.929 45.833 0.00 0.00 0.00 2.87
2399 4232 5.063017 TCCTTATCCAGTCCGTATTCTCT 57.937 43.478 0.00 0.00 0.00 3.10
2403 4236 6.041069 CCTTATCCAGTCCGTATTCTCTTCTT 59.959 42.308 0.00 0.00 0.00 2.52
2404 4237 5.941555 ATCCAGTCCGTATTCTCTTCTTT 57.058 39.130 0.00 0.00 0.00 2.52
2413 4246 8.557029 GTCCGTATTCTCTTCTTTTCTGAAAAA 58.443 33.333 15.67 2.58 33.42 1.94
2414 4247 9.284968 TCCGTATTCTCTTCTTTTCTGAAAAAT 57.715 29.630 15.67 7.80 34.00 1.82
2415 4248 9.548208 CCGTATTCTCTTCTTTTCTGAAAAATC 57.452 33.333 15.67 1.14 34.00 2.17
2416 4249 9.255568 CGTATTCTCTTCTTTTCTGAAAAATCG 57.744 33.333 15.67 5.79 34.00 3.34
2417 4250 9.548208 GTATTCTCTTCTTTTCTGAAAAATCGG 57.452 33.333 15.67 5.47 34.00 4.18
2418 4251 6.560253 TCTCTTCTTTTCTGAAAAATCGGG 57.440 37.500 15.67 7.50 34.00 5.14
2419 4252 5.048713 TCTCTTCTTTTCTGAAAAATCGGGC 60.049 40.000 15.67 0.00 34.00 6.13
2420 4253 4.827284 TCTTCTTTTCTGAAAAATCGGGCT 59.173 37.500 15.67 0.00 34.00 5.19
2421 4254 6.001460 TCTTCTTTTCTGAAAAATCGGGCTA 58.999 36.000 15.67 0.00 34.00 3.93
2422 4255 6.659242 TCTTCTTTTCTGAAAAATCGGGCTAT 59.341 34.615 15.67 0.00 34.00 2.97
2423 4256 6.834168 TCTTTTCTGAAAAATCGGGCTATT 57.166 33.333 15.67 0.00 34.00 1.73
2424 4257 6.852664 TCTTTTCTGAAAAATCGGGCTATTC 58.147 36.000 15.67 0.00 34.00 1.75
2425 4258 6.432783 TCTTTTCTGAAAAATCGGGCTATTCA 59.567 34.615 15.67 0.00 34.00 2.57
2426 4259 5.818136 TTCTGAAAAATCGGGCTATTCAG 57.182 39.130 7.34 7.34 45.18 3.02
2427 4260 4.843728 TCTGAAAAATCGGGCTATTCAGT 58.156 39.130 12.07 0.00 44.50 3.41
2428 4261 5.253330 TCTGAAAAATCGGGCTATTCAGTT 58.747 37.500 12.07 0.00 44.50 3.16
2429 4262 5.354234 TCTGAAAAATCGGGCTATTCAGTTC 59.646 40.000 12.07 0.00 44.50 3.01
2430 4263 5.007034 TGAAAAATCGGGCTATTCAGTTCA 58.993 37.500 0.00 0.00 0.00 3.18
2431 4264 5.475220 TGAAAAATCGGGCTATTCAGTTCAA 59.525 36.000 0.00 0.00 0.00 2.69
2432 4265 4.965119 AAATCGGGCTATTCAGTTCAAC 57.035 40.909 0.00 0.00 0.00 3.18
2433 4266 3.627395 ATCGGGCTATTCAGTTCAACA 57.373 42.857 0.00 0.00 0.00 3.33
2434 4267 3.410631 TCGGGCTATTCAGTTCAACAA 57.589 42.857 0.00 0.00 0.00 2.83
2435 4268 3.071479 TCGGGCTATTCAGTTCAACAAC 58.929 45.455 0.00 0.00 0.00 3.32
2436 4269 2.811431 CGGGCTATTCAGTTCAACAACA 59.189 45.455 0.00 0.00 34.60 3.33
2437 4270 3.252215 CGGGCTATTCAGTTCAACAACAA 59.748 43.478 0.00 0.00 34.60 2.83
2438 4271 4.546570 GGGCTATTCAGTTCAACAACAAC 58.453 43.478 0.00 0.00 34.60 3.32
2439 4272 4.219033 GGCTATTCAGTTCAACAACAACG 58.781 43.478 0.00 0.00 34.60 4.10
2440 4273 4.024387 GGCTATTCAGTTCAACAACAACGA 60.024 41.667 0.00 0.00 34.60 3.85
2441 4274 5.140177 GCTATTCAGTTCAACAACAACGAG 58.860 41.667 0.00 0.00 34.60 4.18
2442 4275 5.277345 GCTATTCAGTTCAACAACAACGAGT 60.277 40.000 0.00 0.00 34.60 4.18
2443 4276 4.335082 TTCAGTTCAACAACAACGAGTG 57.665 40.909 0.00 0.00 34.60 3.51
2444 4277 2.675844 TCAGTTCAACAACAACGAGTGG 59.324 45.455 0.00 0.00 34.60 4.00
2445 4278 2.675844 CAGTTCAACAACAACGAGTGGA 59.324 45.455 0.00 0.00 34.60 4.02
2446 4279 2.936498 AGTTCAACAACAACGAGTGGAG 59.064 45.455 0.00 0.00 34.60 3.86
2447 4280 2.676342 GTTCAACAACAACGAGTGGAGT 59.324 45.455 0.00 0.00 32.14 3.85
2448 4281 2.276201 TCAACAACAACGAGTGGAGTG 58.724 47.619 0.00 0.00 0.00 3.51
2449 4282 2.093921 TCAACAACAACGAGTGGAGTGA 60.094 45.455 0.00 0.00 0.00 3.41
2450 4283 2.675844 CAACAACAACGAGTGGAGTGAA 59.324 45.455 0.00 0.00 0.00 3.18
2451 4284 2.550978 ACAACAACGAGTGGAGTGAAG 58.449 47.619 0.00 0.00 0.00 3.02
2452 4285 2.167693 ACAACAACGAGTGGAGTGAAGA 59.832 45.455 0.00 0.00 0.00 2.87
2453 4286 2.797156 CAACAACGAGTGGAGTGAAGAG 59.203 50.000 0.00 0.00 0.00 2.85
2454 4287 1.269831 ACAACGAGTGGAGTGAAGAGC 60.270 52.381 0.00 0.00 0.00 4.09
2455 4288 1.040646 AACGAGTGGAGTGAAGAGCA 58.959 50.000 0.00 0.00 0.00 4.26
2456 4289 1.261480 ACGAGTGGAGTGAAGAGCAT 58.739 50.000 0.00 0.00 0.00 3.79
2457 4290 1.067283 ACGAGTGGAGTGAAGAGCATG 60.067 52.381 0.00 0.00 0.00 4.06
2458 4291 1.203287 CGAGTGGAGTGAAGAGCATGA 59.797 52.381 0.00 0.00 0.00 3.07
2459 4292 2.159128 CGAGTGGAGTGAAGAGCATGAT 60.159 50.000 0.00 0.00 0.00 2.45
2460 4293 3.196463 GAGTGGAGTGAAGAGCATGATG 58.804 50.000 0.00 0.00 0.00 3.07
2461 4294 2.570752 AGTGGAGTGAAGAGCATGATGT 59.429 45.455 0.00 0.00 0.00 3.06
2462 4295 2.935201 GTGGAGTGAAGAGCATGATGTC 59.065 50.000 0.00 0.00 0.00 3.06
2463 4296 2.093288 TGGAGTGAAGAGCATGATGTCC 60.093 50.000 0.00 0.00 0.00 4.02
2464 4297 2.093288 GGAGTGAAGAGCATGATGTCCA 60.093 50.000 0.00 0.00 0.00 4.02
2465 4298 3.603532 GAGTGAAGAGCATGATGTCCAA 58.396 45.455 0.00 0.00 0.00 3.53
2466 4299 4.005650 GAGTGAAGAGCATGATGTCCAAA 58.994 43.478 0.00 0.00 0.00 3.28
2467 4300 3.755378 AGTGAAGAGCATGATGTCCAAAC 59.245 43.478 0.00 0.00 0.00 2.93
2468 4301 3.503363 GTGAAGAGCATGATGTCCAAACA 59.497 43.478 0.00 0.00 40.38 2.83
2470 4303 4.768448 TGAAGAGCATGATGTCCAAACATT 59.232 37.500 0.00 0.00 46.20 2.71
2471 4304 5.244402 TGAAGAGCATGATGTCCAAACATTT 59.756 36.000 0.00 0.00 46.20 2.32
2472 4305 5.320549 AGAGCATGATGTCCAAACATTTC 57.679 39.130 0.00 0.00 46.20 2.17
2473 4306 4.159135 AGAGCATGATGTCCAAACATTTCC 59.841 41.667 0.00 0.00 46.20 3.13
2474 4307 3.833650 AGCATGATGTCCAAACATTTCCA 59.166 39.130 0.00 0.00 46.20 3.53
2475 4308 3.928375 GCATGATGTCCAAACATTTCCAC 59.072 43.478 0.00 0.00 46.20 4.02
2476 4309 4.497300 CATGATGTCCAAACATTTCCACC 58.503 43.478 0.00 0.00 46.20 4.61
2477 4310 3.570540 TGATGTCCAAACATTTCCACCA 58.429 40.909 0.00 0.00 46.20 4.17
2478 4311 3.963374 TGATGTCCAAACATTTCCACCAA 59.037 39.130 0.00 0.00 46.20 3.67
2479 4312 4.406972 TGATGTCCAAACATTTCCACCAAA 59.593 37.500 0.00 0.00 46.20 3.28
2480 4313 4.826274 TGTCCAAACATTTCCACCAAAA 57.174 36.364 0.00 0.00 0.00 2.44
2481 4314 5.365021 TGTCCAAACATTTCCACCAAAAT 57.635 34.783 0.00 0.00 0.00 1.82
2482 4315 5.749462 TGTCCAAACATTTCCACCAAAATT 58.251 33.333 0.00 0.00 0.00 1.82
2483 4316 6.183347 TGTCCAAACATTTCCACCAAAATTT 58.817 32.000 0.00 0.00 0.00 1.82
2484 4317 6.317391 TGTCCAAACATTTCCACCAAAATTTC 59.683 34.615 0.00 0.00 0.00 2.17
2485 4318 5.825151 TCCAAACATTTCCACCAAAATTTCC 59.175 36.000 0.00 0.00 0.00 3.13
2492 4325 8.756927 ACATTTCCACCAAAATTTCCAAAAATT 58.243 25.926 0.00 0.00 44.97 1.82
2503 4336 7.936496 AATTTCCAAAAATTTGTCACCAACT 57.064 28.000 5.27 0.00 41.27 3.16
2507 4340 6.467677 TCCAAAAATTTGTCACCAACTTCAA 58.532 32.000 5.27 0.00 36.45 2.69
2509 4342 7.609532 TCCAAAAATTTGTCACCAACTTCAAAT 59.390 29.630 5.27 0.00 40.62 2.32
2510 4343 8.887717 CCAAAAATTTGTCACCAACTTCAAATA 58.112 29.630 5.27 0.00 38.84 1.40
2511 4344 9.919348 CAAAAATTTGTCACCAACTTCAAATAG 57.081 29.630 0.00 0.00 38.84 1.73
2513 4346 9.533253 AAAATTTGTCACCAACTTCAAATAGAG 57.467 29.630 0.00 0.00 38.84 2.43
2516 4349 4.756642 TGTCACCAACTTCAAATAGAGCAG 59.243 41.667 0.00 0.00 0.00 4.24
2518 4351 5.121454 GTCACCAACTTCAAATAGAGCAGAG 59.879 44.000 0.00 0.00 0.00 3.35
2521 4354 5.247110 ACCAACTTCAAATAGAGCAGAGAGA 59.753 40.000 0.00 0.00 0.00 3.10
2522 4355 6.169094 CCAACTTCAAATAGAGCAGAGAGAA 58.831 40.000 0.00 0.00 0.00 2.87
2523 4356 6.652481 CCAACTTCAAATAGAGCAGAGAGAAA 59.348 38.462 0.00 0.00 0.00 2.52
2524 4357 7.173907 CCAACTTCAAATAGAGCAGAGAGAAAA 59.826 37.037 0.00 0.00 0.00 2.29
2525 4358 7.903995 ACTTCAAATAGAGCAGAGAGAAAAG 57.096 36.000 0.00 0.00 0.00 2.27
2526 4359 7.675062 ACTTCAAATAGAGCAGAGAGAAAAGA 58.325 34.615 0.00 0.00 0.00 2.52
2527 4360 8.320617 ACTTCAAATAGAGCAGAGAGAAAAGAT 58.679 33.333 0.00 0.00 0.00 2.40
2528 4361 9.165035 CTTCAAATAGAGCAGAGAGAAAAGATT 57.835 33.333 0.00 0.00 0.00 2.40
2529 4362 9.512588 TTCAAATAGAGCAGAGAGAAAAGATTT 57.487 29.630 0.00 0.00 0.00 2.17
2530 4363 9.160496 TCAAATAGAGCAGAGAGAAAAGATTTC 57.840 33.333 0.00 0.00 0.00 2.17
2533 4366 8.721019 ATAGAGCAGAGAGAAAAGATTTCAAG 57.279 34.615 5.71 0.00 0.00 3.02
2539 4372 7.754475 GCAGAGAGAAAAGATTTCAAGATTTCC 59.246 37.037 5.71 0.00 31.91 3.13
2542 4375 6.438741 AGAGAAAAGATTTCAAGATTTCCCCC 59.561 38.462 5.71 0.00 31.91 5.40
2545 4378 6.762077 AAAGATTTCAAGATTTCCCCCAAA 57.238 33.333 0.00 0.00 0.00 3.28
2549 4382 7.397221 AGATTTCAAGATTTCCCCCAAAATTC 58.603 34.615 0.00 0.00 0.00 2.17
2557 4390 8.628368 AGATTTCCCCCAAAATTCAGATTATT 57.372 30.769 0.00 0.00 0.00 1.40
2559 4392 9.685276 GATTTCCCCCAAAATTCAGATTATTTT 57.315 29.630 0.00 0.00 36.03 1.82
2584 4417 6.487689 TCACTATCATCGTGCATAGTAGAG 57.512 41.667 0.00 0.00 34.63 2.43
2585 4418 5.998363 TCACTATCATCGTGCATAGTAGAGT 59.002 40.000 0.00 0.00 34.63 3.24
2587 4420 4.775058 ATCATCGTGCATAGTAGAGTCC 57.225 45.455 0.00 0.00 0.00 3.85
2588 4421 3.551846 TCATCGTGCATAGTAGAGTCCA 58.448 45.455 0.00 0.00 0.00 4.02
2591 4424 4.794278 TCGTGCATAGTAGAGTCCAAAA 57.206 40.909 0.00 0.00 0.00 2.44
2593 4426 4.219944 TCGTGCATAGTAGAGTCCAAAACT 59.780 41.667 0.00 0.00 42.42 2.66
2594 4427 4.929808 CGTGCATAGTAGAGTCCAAAACTT 59.070 41.667 0.00 0.00 38.74 2.66
2595 4428 5.062308 CGTGCATAGTAGAGTCCAAAACTTC 59.938 44.000 0.00 0.00 38.74 3.01
2599 4432 6.702329 CATAGTAGAGTCCAAAACTTCCTGT 58.298 40.000 0.00 0.00 38.74 4.00
2600 4433 5.216614 AGTAGAGTCCAAAACTTCCTGTC 57.783 43.478 0.00 0.00 38.74 3.51
2601 4434 4.902448 AGTAGAGTCCAAAACTTCCTGTCT 59.098 41.667 0.00 0.00 38.74 3.41
2602 4435 4.078639 AGAGTCCAAAACTTCCTGTCTG 57.921 45.455 0.00 0.00 38.74 3.51
2605 4438 2.291741 GTCCAAAACTTCCTGTCTGCAG 59.708 50.000 7.63 7.63 42.22 4.41
2606 4439 2.092429 TCCAAAACTTCCTGTCTGCAGT 60.092 45.455 14.67 0.00 41.02 4.40
2607 4440 2.689983 CCAAAACTTCCTGTCTGCAGTT 59.310 45.455 14.67 0.00 41.02 3.16
2613 4446 3.388024 ACTTCCTGTCTGCAGTTCACTTA 59.612 43.478 14.67 0.00 41.02 2.24
2622 4455 8.032952 TGTCTGCAGTTCACTTAATGATTTAG 57.967 34.615 14.67 0.00 37.11 1.85
2635 4468 8.893727 ACTTAATGATTTAGAAAATCGGTCCAG 58.106 33.333 0.00 3.66 0.00 3.86
2640 4473 7.985476 TGATTTAGAAAATCGGTCCAGAATTC 58.015 34.615 0.00 0.00 0.00 2.17
2642 4476 3.939066 AGAAAATCGGTCCAGAATTCGT 58.061 40.909 0.00 0.00 0.00 3.85
2647 4481 1.553248 TCGGTCCAGAATTCGTGGATT 59.447 47.619 21.80 0.00 45.91 3.01
2655 4494 4.202080 CCAGAATTCGTGGATTGATGCATT 60.202 41.667 15.10 0.00 37.23 3.56
2656 4495 4.738252 CAGAATTCGTGGATTGATGCATTG 59.262 41.667 0.00 0.00 0.00 2.82
2673 4512 4.256920 GCATTGGTTCATGTCTACTGAGT 58.743 43.478 0.00 0.00 0.00 3.41
2678 4517 8.607459 CATTGGTTCATGTCTACTGAGTAAATC 58.393 37.037 0.00 0.00 0.00 2.17
2686 4525 9.376075 CATGTCTACTGAGTAAATCTTGTTCAT 57.624 33.333 0.00 0.00 0.00 2.57
2688 4527 9.856488 TGTCTACTGAGTAAATCTTGTTCATAC 57.144 33.333 0.00 0.00 0.00 2.39
2693 4532 9.429359 ACTGAGTAAATCTTGTTCATACTTCTG 57.571 33.333 0.00 0.00 0.00 3.02
2694 4533 8.777865 TGAGTAAATCTTGTTCATACTTCTGG 57.222 34.615 0.00 0.00 0.00 3.86
2695 4534 8.375506 TGAGTAAATCTTGTTCATACTTCTGGT 58.624 33.333 0.00 0.00 0.00 4.00
2704 4569 4.085357 TCATACTTCTGGTGCTGTGTTT 57.915 40.909 0.00 0.00 0.00 2.83
2705 4570 4.065088 TCATACTTCTGGTGCTGTGTTTC 58.935 43.478 0.00 0.00 0.00 2.78
2707 4572 1.064758 ACTTCTGGTGCTGTGTTTCCA 60.065 47.619 0.00 0.00 0.00 3.53
2708 4573 1.334869 CTTCTGGTGCTGTGTTTCCAC 59.665 52.381 0.00 0.00 42.19 4.02
2709 4574 0.546122 TCTGGTGCTGTGTTTCCACT 59.454 50.000 0.00 0.00 42.34 4.00
2710 4575 0.664761 CTGGTGCTGTGTTTCCACTG 59.335 55.000 0.00 0.00 42.34 3.66
2711 4576 0.254462 TGGTGCTGTGTTTCCACTGA 59.746 50.000 4.22 0.00 41.57 3.41
2712 4577 1.133823 TGGTGCTGTGTTTCCACTGAT 60.134 47.619 4.22 0.00 41.57 2.90
2713 4578 1.956477 GGTGCTGTGTTTCCACTGATT 59.044 47.619 4.22 0.00 41.57 2.57
2714 4579 2.287788 GGTGCTGTGTTTCCACTGATTG 60.288 50.000 4.22 0.00 41.57 2.67
2715 4580 1.337703 TGCTGTGTTTCCACTGATTGC 59.662 47.619 4.22 0.00 41.57 3.56
2716 4581 1.610522 GCTGTGTTTCCACTGATTGCT 59.389 47.619 4.22 0.00 41.57 3.91
2717 4582 2.813754 GCTGTGTTTCCACTGATTGCTA 59.186 45.455 4.22 0.00 41.57 3.49
2718 4583 3.365364 GCTGTGTTTCCACTGATTGCTAC 60.365 47.826 4.22 0.00 41.57 3.58
2719 4584 3.146066 TGTGTTTCCACTGATTGCTACC 58.854 45.455 0.00 0.00 42.34 3.18
2720 4585 2.488153 GTGTTTCCACTGATTGCTACCC 59.512 50.000 0.00 0.00 38.61 3.69
2721 4586 2.092323 GTTTCCACTGATTGCTACCCC 58.908 52.381 0.00 0.00 0.00 4.95
2722 4587 1.367346 TTCCACTGATTGCTACCCCA 58.633 50.000 0.00 0.00 0.00 4.96
2723 4588 0.911769 TCCACTGATTGCTACCCCAG 59.088 55.000 0.00 0.00 0.00 4.45
2724 4589 0.620556 CCACTGATTGCTACCCCAGT 59.379 55.000 0.00 0.00 40.15 4.00
2725 4590 1.837439 CCACTGATTGCTACCCCAGTA 59.163 52.381 0.00 0.00 37.74 2.74
2726 4591 2.420129 CCACTGATTGCTACCCCAGTAC 60.420 54.545 0.00 0.00 37.74 2.73
2727 4592 1.838077 ACTGATTGCTACCCCAGTACC 59.162 52.381 0.00 0.00 38.02 3.34
2728 4593 1.837439 CTGATTGCTACCCCAGTACCA 59.163 52.381 0.00 0.00 0.00 3.25
2729 4594 2.439507 CTGATTGCTACCCCAGTACCAT 59.560 50.000 0.00 0.00 0.00 3.55
2730 4595 2.172505 TGATTGCTACCCCAGTACCATG 59.827 50.000 0.00 0.00 0.00 3.66
2731 4596 1.663911 TTGCTACCCCAGTACCATGT 58.336 50.000 0.00 0.00 0.00 3.21
2732 4597 1.663911 TGCTACCCCAGTACCATGTT 58.336 50.000 0.00 0.00 0.00 2.71
2733 4598 2.835389 TGCTACCCCAGTACCATGTTA 58.165 47.619 0.00 0.00 0.00 2.41
2734 4599 3.389866 TGCTACCCCAGTACCATGTTAT 58.610 45.455 0.00 0.00 0.00 1.89
2735 4600 3.783642 TGCTACCCCAGTACCATGTTATT 59.216 43.478 0.00 0.00 0.00 1.40
2736 4601 4.228666 TGCTACCCCAGTACCATGTTATTT 59.771 41.667 0.00 0.00 0.00 1.40
2737 4602 5.198207 GCTACCCCAGTACCATGTTATTTT 58.802 41.667 0.00 0.00 0.00 1.82
2738 4603 5.067283 GCTACCCCAGTACCATGTTATTTTG 59.933 44.000 0.00 0.00 0.00 2.44
2739 4604 5.263872 ACCCCAGTACCATGTTATTTTGA 57.736 39.130 0.00 0.00 0.00 2.69
2740 4605 5.837829 ACCCCAGTACCATGTTATTTTGAT 58.162 37.500 0.00 0.00 0.00 2.57
2741 4606 6.260663 ACCCCAGTACCATGTTATTTTGATT 58.739 36.000 0.00 0.00 0.00 2.57
2742 4607 6.154363 ACCCCAGTACCATGTTATTTTGATTG 59.846 38.462 0.00 0.00 0.00 2.67
2743 4608 6.379703 CCCCAGTACCATGTTATTTTGATTGA 59.620 38.462 0.00 0.00 0.00 2.57
2744 4609 7.416664 CCCCAGTACCATGTTATTTTGATTGAG 60.417 40.741 0.00 0.00 0.00 3.02
2745 4610 7.416664 CCCAGTACCATGTTATTTTGATTGAGG 60.417 40.741 0.00 0.00 0.00 3.86
2746 4611 7.122650 CCAGTACCATGTTATTTTGATTGAGGT 59.877 37.037 0.00 0.00 0.00 3.85
2747 4612 7.970061 CAGTACCATGTTATTTTGATTGAGGTG 59.030 37.037 0.00 0.00 0.00 4.00
2748 4613 6.284891 ACCATGTTATTTTGATTGAGGTGG 57.715 37.500 0.00 0.00 0.00 4.61
2749 4614 5.779771 ACCATGTTATTTTGATTGAGGTGGT 59.220 36.000 0.00 0.00 0.00 4.16
2750 4615 6.101332 CCATGTTATTTTGATTGAGGTGGTG 58.899 40.000 0.00 0.00 0.00 4.17
2751 4616 5.720371 TGTTATTTTGATTGAGGTGGTGG 57.280 39.130 0.00 0.00 0.00 4.61
2752 4617 5.389520 TGTTATTTTGATTGAGGTGGTGGA 58.610 37.500 0.00 0.00 0.00 4.02
2753 4618 5.242838 TGTTATTTTGATTGAGGTGGTGGAC 59.757 40.000 0.00 0.00 0.00 4.02
2754 4619 1.890876 TTTGATTGAGGTGGTGGACG 58.109 50.000 0.00 0.00 0.00 4.79
2801 4667 5.749462 AGCCTTGTTTTATAGACAGCATCT 58.251 37.500 0.00 0.00 41.95 2.90
2806 4672 7.224362 CCTTGTTTTATAGACAGCATCTCTCTG 59.776 40.741 0.00 0.00 39.04 3.35
2810 4676 0.173029 AGACAGCATCTCTCTGCACG 59.827 55.000 0.00 0.00 44.77 5.34
2822 4712 1.008538 CTGCACGTTCCAAAGTGGC 60.009 57.895 7.37 1.63 38.56 5.01
2832 4722 0.746063 CCAAAGTGGCTGTTGCAGAA 59.254 50.000 0.00 0.00 41.91 3.02
2841 4731 4.081406 TGGCTGTTGCAGAATTTCATACT 58.919 39.130 0.00 0.00 41.91 2.12
2842 4732 5.123820 GTGGCTGTTGCAGAATTTCATACTA 59.876 40.000 0.00 0.00 41.91 1.82
2843 4733 5.355071 TGGCTGTTGCAGAATTTCATACTAG 59.645 40.000 0.00 0.00 41.91 2.57
2844 4734 5.355350 GGCTGTTGCAGAATTTCATACTAGT 59.645 40.000 0.00 0.00 41.91 2.57
2845 4735 6.538742 GGCTGTTGCAGAATTTCATACTAGTA 59.461 38.462 4.77 4.77 41.91 1.82
2846 4736 7.254590 GGCTGTTGCAGAATTTCATACTAGTAG 60.255 40.741 8.85 0.00 41.91 2.57
2847 4737 7.492669 GCTGTTGCAGAATTTCATACTAGTAGA 59.507 37.037 8.85 3.67 39.41 2.59
2848 4738 8.932945 TGTTGCAGAATTTCATACTAGTAGAG 57.067 34.615 8.85 3.93 0.00 2.43
2849 4739 8.531982 TGTTGCAGAATTTCATACTAGTAGAGT 58.468 33.333 8.85 0.00 42.69 3.24
2852 4742 8.353684 TGCAGAATTTCATACTAGTAGAGTAGC 58.646 37.037 8.85 4.56 43.99 3.58
2853 4743 8.353684 GCAGAATTTCATACTAGTAGAGTAGCA 58.646 37.037 8.85 0.00 43.99 3.49
2856 4746 9.849166 GAATTTCATACTAGTAGAGTAGCATCC 57.151 37.037 8.85 0.00 43.99 3.51
2857 4747 7.762588 TTTCATACTAGTAGAGTAGCATCCC 57.237 40.000 8.85 0.00 43.99 3.85
2858 4748 5.817784 TCATACTAGTAGAGTAGCATCCCC 58.182 45.833 8.85 0.00 43.99 4.81
2859 4749 5.552371 TCATACTAGTAGAGTAGCATCCCCT 59.448 44.000 8.85 0.00 43.99 4.79
2877 4793 3.119849 CCCCTTGCAAAAACAGAGTATCG 60.120 47.826 0.00 0.00 42.67 2.92
2950 4873 6.424509 CAGAGTTTCATAGAAGCATCTCATCC 59.575 42.308 0.00 0.00 37.10 3.51
3035 4984 1.272704 ACTTTCCCTTTCAGATGGCCC 60.273 52.381 0.00 0.00 0.00 5.80
3149 5098 4.142315 CGATCTCCTTGCCAATCAACATTT 60.142 41.667 0.00 0.00 0.00 2.32
3172 5121 0.831307 GGACCAGCTACTACCAAGGG 59.169 60.000 0.00 0.00 0.00 3.95
3173 5122 0.178301 GACCAGCTACTACCAAGGGC 59.822 60.000 0.00 0.00 0.00 5.19
3222 5171 0.732196 CTAGAGCAGATGATCGCGGC 60.732 60.000 6.13 0.00 35.26 6.53
3515 5506 4.436242 TCTGGAGTTTACTGACGACATC 57.564 45.455 0.00 0.00 0.00 3.06
3680 5683 8.198109 GTCAGAGTAGGAATTTACTATGAGCAA 58.802 37.037 12.67 0.00 46.59 3.91
3831 5835 6.422333 TGGTGAGATATGCTTGGAAATTGTA 58.578 36.000 0.00 0.00 0.00 2.41
3879 5884 9.083422 TCTCCTAGGAATATATGAAGTCAGTTG 57.917 37.037 13.77 0.00 0.00 3.16
4023 10825 3.713902 CCATGGAGATGGCTGGTAC 57.286 57.895 5.56 0.00 43.00 3.34
4076 10895 6.458478 CCATCAAAACACCAGTAAAACGTACA 60.458 38.462 0.00 0.00 0.00 2.90
4081 10906 4.260170 ACACCAGTAAAACGTACAACCAA 58.740 39.130 0.00 0.00 0.00 3.67
4228 11056 1.396301 GCAGAGATCGCAACTTTCCTG 59.604 52.381 0.00 0.00 0.00 3.86
4245 11073 1.338674 CCTGCACTATTTCGTGACCCA 60.339 52.381 0.00 0.00 37.06 4.51
4278 11106 7.434602 GTCTGTACAACCTCTTATTAATCGACC 59.565 40.741 0.00 0.00 0.00 4.79
4279 11107 6.267817 TGTACAACCTCTTATTAATCGACCG 58.732 40.000 0.00 0.00 0.00 4.79
4281 11109 4.116961 CAACCTCTTATTAATCGACCGCA 58.883 43.478 0.00 0.00 0.00 5.69
4290 11118 7.658167 TCTTATTAATCGACCGCAATCCAATTA 59.342 33.333 0.00 0.00 0.00 1.40
4307 11138 4.935808 CCAATTACTAAGAACAGCTTCGGT 59.064 41.667 0.00 0.00 38.05 4.69
4323 11162 5.178809 AGCTTCGGTGTTATTTACTGACAAC 59.821 40.000 0.00 0.00 33.41 3.32
4324 11163 5.049954 GCTTCGGTGTTATTTACTGACAACA 60.050 40.000 0.00 0.00 30.62 3.33
4585 11453 6.127897 ACAGATTTGCTAGGTAATTGAAGCAC 60.128 38.462 5.63 0.00 44.19 4.40
4884 11752 4.100084 TGAGACCCATGCCTGGCG 62.100 66.667 14.98 1.58 41.64 5.69
5165 12039 8.909671 GTGATCAGTGAATTCTTGAATCAAAAC 58.090 33.333 14.37 0.00 0.00 2.43
5167 12041 9.635520 GATCAGTGAATTCTTGAATCAAAACAT 57.364 29.630 14.37 0.00 0.00 2.71
5279 12204 1.875514 GTGCAGCACAGTGAATGAAGA 59.124 47.619 21.22 0.00 34.08 2.87
5281 12206 2.551032 TGCAGCACAGTGAATGAAGAAG 59.449 45.455 4.15 0.00 0.00 2.85
5282 12207 2.551459 GCAGCACAGTGAATGAAGAAGT 59.449 45.455 4.15 0.00 0.00 3.01
5283 12208 3.748048 GCAGCACAGTGAATGAAGAAGTA 59.252 43.478 4.15 0.00 0.00 2.24
5284 12209 4.142945 GCAGCACAGTGAATGAAGAAGTAG 60.143 45.833 4.15 0.00 0.00 2.57
5285 12210 3.999663 AGCACAGTGAATGAAGAAGTAGC 59.000 43.478 4.15 0.00 0.00 3.58
5419 13337 2.540515 CCCACTCATAAGCTACACACG 58.459 52.381 0.00 0.00 0.00 4.49
5453 13394 1.884235 CCGGCCAGTCCATTATCTTC 58.116 55.000 2.24 0.00 34.01 2.87
5465 13406 4.038042 TCCATTATCTTCTCCGTAGTGCAG 59.962 45.833 0.00 0.00 0.00 4.41
5501 13675 1.615392 GCATATCCATCACCTTTGCCC 59.385 52.381 0.00 0.00 0.00 5.36
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
58 59 2.764314 GCTTGTTCGCGCCATCCAT 61.764 57.895 0.00 0.00 0.00 3.41
128 129 3.061848 CCATGTCGCCCGGCTTTT 61.062 61.111 8.05 0.00 0.00 2.27
215 216 2.386064 TTTCACTACAACGGCCGCCT 62.386 55.000 28.58 10.41 0.00 5.52
217 218 1.205820 GTTTCACTACAACGGCCGC 59.794 57.895 28.58 0.00 0.00 6.53
224 225 1.301874 CCGGCCGGTTTCACTACAA 60.302 57.895 36.64 0.00 0.00 2.41
284 285 1.095600 CGACGAGAAGGAGGACATCA 58.904 55.000 0.00 0.00 0.00 3.07
398 400 3.188786 CGGAAGCGGCGAAGAAGG 61.189 66.667 12.98 0.00 0.00 3.46
699 703 3.148279 TTTGCGCCGGTTTTGGGT 61.148 55.556 4.18 0.00 0.00 4.51
727 731 1.218316 GTCCGCTTTCGACCCATCT 59.782 57.895 0.00 0.00 38.10 2.90
796 802 1.711942 TCCGTTTGGGGTAAAAGGGAT 59.288 47.619 6.93 0.00 44.84 3.85
823 829 2.125326 CGCGACCCTATCCTGTCCA 61.125 63.158 0.00 0.00 0.00 4.02
1002 1036 2.160822 TGCTCTCTCTTGCTTGTGTC 57.839 50.000 0.00 0.00 0.00 3.67
1004 1038 2.032204 GTGTTGCTCTCTCTTGCTTGTG 60.032 50.000 0.00 0.00 0.00 3.33
1030 1079 4.012895 GTGGCGTCTGTGTTGGCG 62.013 66.667 0.00 0.00 0.00 5.69
1073 1133 3.944015 CCTCTTGGATGCTCTGTTTTAGG 59.056 47.826 0.00 0.00 34.57 2.69
1199 1286 1.626686 CTCCTCTGGCCGTATCTCAT 58.373 55.000 0.00 0.00 0.00 2.90
1204 1291 1.403687 GCTTCCTCCTCTGGCCGTAT 61.404 60.000 0.00 0.00 0.00 3.06
1336 1432 4.117372 CCGTCGAGCAAACGCGTC 62.117 66.667 14.44 0.00 40.29 5.19
1337 1433 4.936823 ACCGTCGAGCAAACGCGT 62.937 61.111 5.58 5.58 40.29 6.01
1339 1435 2.380410 ATCACCGTCGAGCAAACGC 61.380 57.895 0.00 0.00 38.77 4.84
1351 1471 1.464608 AGACGTCAAAATGCATCACCG 59.535 47.619 19.50 1.10 0.00 4.94
1363 1491 1.325355 ACCGAGGAAGAAGACGTCAA 58.675 50.000 19.50 0.00 0.00 3.18
1365 1493 1.268899 TGAACCGAGGAAGAAGACGTC 59.731 52.381 7.70 7.70 0.00 4.34
1366 1494 1.000496 GTGAACCGAGGAAGAAGACGT 60.000 52.381 0.00 0.00 0.00 4.34
1382 1510 2.741092 GACCAGACAGCCGGTGAA 59.259 61.111 1.90 0.00 34.99 3.18
1384 1512 2.883828 AAGGACCAGACAGCCGGTG 61.884 63.158 1.90 2.53 34.99 4.94
1388 1516 2.360475 GCCAAGGACCAGACAGCC 60.360 66.667 0.00 0.00 0.00 4.85
1392 1520 0.393537 CATGGAGCCAAGGACCAGAC 60.394 60.000 10.26 0.00 37.12 3.51
1393 1521 0.842030 ACATGGAGCCAAGGACCAGA 60.842 55.000 0.00 0.00 37.12 3.86
1396 1524 1.598701 GCAACATGGAGCCAAGGACC 61.599 60.000 0.00 0.00 0.00 4.46
1399 1527 0.245539 CAAGCAACATGGAGCCAAGG 59.754 55.000 7.88 0.00 0.00 3.61
1401 1529 0.469705 ACCAAGCAACATGGAGCCAA 60.470 50.000 7.88 0.00 40.56 4.52
1402 1530 0.469705 AACCAAGCAACATGGAGCCA 60.470 50.000 7.88 0.00 40.56 4.75
1403 1531 0.681175 AAACCAAGCAACATGGAGCC 59.319 50.000 7.88 0.00 40.56 4.70
1404 1532 1.069049 ACAAACCAAGCAACATGGAGC 59.931 47.619 0.00 0.00 40.56 4.70
1405 1533 2.746269 CACAAACCAAGCAACATGGAG 58.254 47.619 0.00 0.00 40.56 3.86
1410 1651 0.894141 ACAGCACAAACCAAGCAACA 59.106 45.000 0.00 0.00 0.00 3.33
1415 1656 1.102154 TGTCCACAGCACAAACCAAG 58.898 50.000 0.00 0.00 0.00 3.61
1433 1687 2.816087 CACCCATCTCCAGTTTGAGTTG 59.184 50.000 0.00 0.00 33.68 3.16
1441 1695 1.077212 GCATGCACCCATCTCCAGT 60.077 57.895 14.21 0.00 0.00 4.00
1592 2401 0.861837 CGCATTTCCGTAGCTCATCC 59.138 55.000 0.00 0.00 0.00 3.51
1702 2548 1.145571 TGGTACTTTTGGGAGCTGGT 58.854 50.000 0.00 0.00 0.00 4.00
1773 2630 5.148502 TCTCTCTAGAAAAACAGTGGAGGT 58.851 41.667 0.00 0.00 0.00 3.85
2143 3903 1.075226 TCGATCTTGGGGAGGAGGG 60.075 63.158 0.00 0.00 0.00 4.30
2163 3923 2.395360 GGTGGTCGCGCATAAAGCA 61.395 57.895 8.75 2.24 46.13 3.91
2164 3924 2.036764 GAGGTGGTCGCGCATAAAGC 62.037 60.000 8.75 0.00 40.87 3.51
2168 3928 2.431454 ATGGAGGTGGTCGCGCATA 61.431 57.895 8.75 0.00 0.00 3.14
2253 4013 1.340017 CCCAACTCCACATGTACAGGG 60.340 57.143 12.79 8.45 0.00 4.45
2263 4061 1.228552 ACATGCCACCCAACTCCAC 60.229 57.895 0.00 0.00 0.00 4.02
2265 4063 2.040544 CGACATGCCACCCAACTCC 61.041 63.158 0.00 0.00 0.00 3.85
2298 4131 3.764972 GGAGACAGAGGTAGTAGCTGTTT 59.235 47.826 6.60 0.00 42.47 2.83
2300 4133 2.578940 AGGAGACAGAGGTAGTAGCTGT 59.421 50.000 6.60 0.00 44.87 4.40
2303 4136 3.881089 GAGAAGGAGACAGAGGTAGTAGC 59.119 52.174 0.00 0.00 0.00 3.58
2309 4142 3.784178 TCATTGAGAAGGAGACAGAGGT 58.216 45.455 0.00 0.00 0.00 3.85
2312 4145 3.516700 TGCATCATTGAGAAGGAGACAGA 59.483 43.478 0.00 0.00 0.00 3.41
2313 4146 3.870274 TGCATCATTGAGAAGGAGACAG 58.130 45.455 0.00 0.00 0.00 3.51
2314 4147 3.516700 TCTGCATCATTGAGAAGGAGACA 59.483 43.478 0.00 0.00 37.47 3.41
2315 4148 4.121317 CTCTGCATCATTGAGAAGGAGAC 58.879 47.826 0.00 0.00 37.47 3.36
2317 4150 3.468770 CCTCTGCATCATTGAGAAGGAG 58.531 50.000 1.66 0.00 35.09 3.69
2319 4152 1.948145 GCCTCTGCATCATTGAGAAGG 59.052 52.381 1.66 0.00 37.47 3.46
2320 4153 1.948145 GGCCTCTGCATCATTGAGAAG 59.052 52.381 0.00 0.00 40.13 2.85
2321 4154 1.744798 CGGCCTCTGCATCATTGAGAA 60.745 52.381 0.00 0.00 40.13 2.87
2325 4158 2.719979 GCGGCCTCTGCATCATTG 59.280 61.111 0.00 0.00 40.13 2.82
2326 4159 2.898840 CGCGGCCTCTGCATCATT 60.899 61.111 0.00 0.00 40.13 2.57
2327 4160 4.923942 CCGCGGCCTCTGCATCAT 62.924 66.667 14.67 0.00 40.13 2.45
2345 4178 2.289820 GTGTCGGAAAGGAGGTTGAAAC 59.710 50.000 0.00 0.00 0.00 2.78
2347 4180 1.487142 TGTGTCGGAAAGGAGGTTGAA 59.513 47.619 0.00 0.00 0.00 2.69
2348 4181 1.070134 CTGTGTCGGAAAGGAGGTTGA 59.930 52.381 0.00 0.00 0.00 3.18
2349 4182 1.512926 CTGTGTCGGAAAGGAGGTTG 58.487 55.000 0.00 0.00 0.00 3.77
2350 4183 0.250338 GCTGTGTCGGAAAGGAGGTT 60.250 55.000 0.00 0.00 0.00 3.50
2351 4184 1.371558 GCTGTGTCGGAAAGGAGGT 59.628 57.895 0.00 0.00 0.00 3.85
2352 4185 1.376037 GGCTGTGTCGGAAAGGAGG 60.376 63.158 0.00 0.00 0.00 4.30
2353 4186 0.035458 AAGGCTGTGTCGGAAAGGAG 59.965 55.000 0.00 0.00 0.00 3.69
2354 4187 0.034896 GAAGGCTGTGTCGGAAAGGA 59.965 55.000 0.00 0.00 0.00 3.36
2355 4188 0.250295 TGAAGGCTGTGTCGGAAAGG 60.250 55.000 0.00 0.00 0.00 3.11
2356 4189 1.734465 GATGAAGGCTGTGTCGGAAAG 59.266 52.381 0.00 0.00 0.00 2.62
2357 4190 1.347707 AGATGAAGGCTGTGTCGGAAA 59.652 47.619 0.00 0.00 0.00 3.13
2358 4191 0.976641 AGATGAAGGCTGTGTCGGAA 59.023 50.000 0.00 0.00 0.00 4.30
2359 4192 0.532573 GAGATGAAGGCTGTGTCGGA 59.467 55.000 0.00 0.00 0.00 4.55
2360 4193 0.460987 GGAGATGAAGGCTGTGTCGG 60.461 60.000 0.00 0.00 0.00 4.79
2361 4194 0.534412 AGGAGATGAAGGCTGTGTCG 59.466 55.000 0.00 0.00 0.00 4.35
2362 4195 2.777832 AAGGAGATGAAGGCTGTGTC 57.222 50.000 0.00 0.00 0.00 3.67
2363 4196 3.135530 GGATAAGGAGATGAAGGCTGTGT 59.864 47.826 0.00 0.00 0.00 3.72
2364 4197 3.135348 TGGATAAGGAGATGAAGGCTGTG 59.865 47.826 0.00 0.00 0.00 3.66
2365 4198 3.387962 TGGATAAGGAGATGAAGGCTGT 58.612 45.455 0.00 0.00 0.00 4.40
2366 4199 3.390639 ACTGGATAAGGAGATGAAGGCTG 59.609 47.826 0.00 0.00 0.00 4.85
2367 4200 3.645687 GACTGGATAAGGAGATGAAGGCT 59.354 47.826 0.00 0.00 0.00 4.58
2368 4201 3.244387 GGACTGGATAAGGAGATGAAGGC 60.244 52.174 0.00 0.00 0.00 4.35
2369 4202 3.006323 CGGACTGGATAAGGAGATGAAGG 59.994 52.174 0.00 0.00 0.00 3.46
2370 4203 3.639094 ACGGACTGGATAAGGAGATGAAG 59.361 47.826 0.00 0.00 0.00 3.02
2371 4204 3.643237 ACGGACTGGATAAGGAGATGAA 58.357 45.455 0.00 0.00 0.00 2.57
2372 4205 3.314307 ACGGACTGGATAAGGAGATGA 57.686 47.619 0.00 0.00 0.00 2.92
2373 4206 5.478679 AGAATACGGACTGGATAAGGAGATG 59.521 44.000 0.00 0.00 0.00 2.90
2374 4207 5.646215 AGAATACGGACTGGATAAGGAGAT 58.354 41.667 0.00 0.00 0.00 2.75
2375 4208 5.063017 AGAATACGGACTGGATAAGGAGA 57.937 43.478 0.00 0.00 0.00 3.71
2376 4209 5.074115 AGAGAATACGGACTGGATAAGGAG 58.926 45.833 0.00 0.00 0.00 3.69
2377 4210 5.063017 AGAGAATACGGACTGGATAAGGA 57.937 43.478 0.00 0.00 0.00 3.36
2378 4211 5.536916 AGAAGAGAATACGGACTGGATAAGG 59.463 44.000 0.00 0.00 0.00 2.69
2379 4212 6.642707 AGAAGAGAATACGGACTGGATAAG 57.357 41.667 0.00 0.00 0.00 1.73
2380 4213 7.419711 AAAGAAGAGAATACGGACTGGATAA 57.580 36.000 0.00 0.00 0.00 1.75
2381 4214 7.342284 AGAAAAGAAGAGAATACGGACTGGATA 59.658 37.037 0.00 0.00 0.00 2.59
2382 4215 5.941555 AAAGAAGAGAATACGGACTGGAT 57.058 39.130 0.00 0.00 0.00 3.41
2383 4216 5.480772 AGAAAAGAAGAGAATACGGACTGGA 59.519 40.000 0.00 0.00 0.00 3.86
2384 4217 5.578727 CAGAAAAGAAGAGAATACGGACTGG 59.421 44.000 0.00 0.00 0.00 4.00
2385 4218 6.390721 TCAGAAAAGAAGAGAATACGGACTG 58.609 40.000 0.00 0.00 0.00 3.51
2386 4219 6.591750 TCAGAAAAGAAGAGAATACGGACT 57.408 37.500 0.00 0.00 0.00 3.85
2387 4220 7.653767 TTTCAGAAAAGAAGAGAATACGGAC 57.346 36.000 0.00 0.00 0.00 4.79
2388 4221 8.671384 TTTTTCAGAAAAGAAGAGAATACGGA 57.329 30.769 8.34 0.00 31.41 4.69
2389 4222 9.548208 GATTTTTCAGAAAAGAAGAGAATACGG 57.452 33.333 8.34 0.00 38.09 4.02
2390 4223 9.255568 CGATTTTTCAGAAAAGAAGAGAATACG 57.744 33.333 8.34 1.83 38.09 3.06
2391 4224 9.548208 CCGATTTTTCAGAAAAGAAGAGAATAC 57.452 33.333 8.34 0.00 38.09 1.89
2392 4225 8.730680 CCCGATTTTTCAGAAAAGAAGAGAATA 58.269 33.333 8.34 0.00 38.09 1.75
2393 4226 7.597386 CCCGATTTTTCAGAAAAGAAGAGAAT 58.403 34.615 8.34 0.00 38.09 2.40
2394 4227 6.515035 GCCCGATTTTTCAGAAAAGAAGAGAA 60.515 38.462 8.34 0.00 38.09 2.87
2398 4231 5.126396 AGCCCGATTTTTCAGAAAAGAAG 57.874 39.130 8.34 4.40 38.09 2.85
2399 4232 6.834168 ATAGCCCGATTTTTCAGAAAAGAA 57.166 33.333 8.34 0.00 38.09 2.52
2403 4236 5.710099 ACTGAATAGCCCGATTTTTCAGAAA 59.290 36.000 15.60 0.00 43.72 2.52
2404 4237 5.253330 ACTGAATAGCCCGATTTTTCAGAA 58.747 37.500 15.60 0.00 43.72 3.02
2413 4246 3.627395 TGTTGAACTGAATAGCCCGAT 57.373 42.857 0.00 0.00 0.00 4.18
2414 4247 3.071479 GTTGTTGAACTGAATAGCCCGA 58.929 45.455 0.00 0.00 0.00 5.14
2415 4248 2.811431 TGTTGTTGAACTGAATAGCCCG 59.189 45.455 0.00 0.00 32.79 6.13
2416 4249 4.546570 GTTGTTGTTGAACTGAATAGCCC 58.453 43.478 0.00 0.00 32.79 5.19
2417 4250 4.024387 TCGTTGTTGTTGAACTGAATAGCC 60.024 41.667 0.00 0.00 32.79 3.93
2418 4251 5.090652 TCGTTGTTGTTGAACTGAATAGC 57.909 39.130 0.00 0.00 32.79 2.97
2419 4252 6.129393 CACTCGTTGTTGTTGAACTGAATAG 58.871 40.000 0.00 0.00 32.79 1.73
2420 4253 5.007234 CCACTCGTTGTTGTTGAACTGAATA 59.993 40.000 0.00 0.00 32.79 1.75
2421 4254 4.201910 CCACTCGTTGTTGTTGAACTGAAT 60.202 41.667 0.00 0.00 32.79 2.57
2422 4255 3.126171 CCACTCGTTGTTGTTGAACTGAA 59.874 43.478 0.00 0.00 32.79 3.02
2423 4256 2.675844 CCACTCGTTGTTGTTGAACTGA 59.324 45.455 0.00 0.00 32.79 3.41
2424 4257 2.675844 TCCACTCGTTGTTGTTGAACTG 59.324 45.455 0.00 0.00 32.79 3.16
2425 4258 2.936498 CTCCACTCGTTGTTGTTGAACT 59.064 45.455 0.00 0.00 32.79 3.01
2426 4259 2.676342 ACTCCACTCGTTGTTGTTGAAC 59.324 45.455 0.00 0.00 0.00 3.18
2427 4260 2.675844 CACTCCACTCGTTGTTGTTGAA 59.324 45.455 0.00 0.00 0.00 2.69
2428 4261 2.093921 TCACTCCACTCGTTGTTGTTGA 60.094 45.455 0.00 0.00 0.00 3.18
2429 4262 2.276201 TCACTCCACTCGTTGTTGTTG 58.724 47.619 0.00 0.00 0.00 3.33
2430 4263 2.684001 TCACTCCACTCGTTGTTGTT 57.316 45.000 0.00 0.00 0.00 2.83
2431 4264 2.167693 TCTTCACTCCACTCGTTGTTGT 59.832 45.455 0.00 0.00 0.00 3.32
2432 4265 2.797156 CTCTTCACTCCACTCGTTGTTG 59.203 50.000 0.00 0.00 0.00 3.33
2433 4266 2.803492 GCTCTTCACTCCACTCGTTGTT 60.803 50.000 0.00 0.00 0.00 2.83
2434 4267 1.269831 GCTCTTCACTCCACTCGTTGT 60.270 52.381 0.00 0.00 0.00 3.32
2435 4268 1.269778 TGCTCTTCACTCCACTCGTTG 60.270 52.381 0.00 0.00 0.00 4.10
2436 4269 1.040646 TGCTCTTCACTCCACTCGTT 58.959 50.000 0.00 0.00 0.00 3.85
2437 4270 1.067283 CATGCTCTTCACTCCACTCGT 60.067 52.381 0.00 0.00 0.00 4.18
2438 4271 1.203287 TCATGCTCTTCACTCCACTCG 59.797 52.381 0.00 0.00 0.00 4.18
2439 4272 3.196463 CATCATGCTCTTCACTCCACTC 58.804 50.000 0.00 0.00 0.00 3.51
2440 4273 2.570752 ACATCATGCTCTTCACTCCACT 59.429 45.455 0.00 0.00 0.00 4.00
2441 4274 2.935201 GACATCATGCTCTTCACTCCAC 59.065 50.000 0.00 0.00 0.00 4.02
2442 4275 2.093288 GGACATCATGCTCTTCACTCCA 60.093 50.000 0.00 0.00 0.00 3.86
2443 4276 2.093288 TGGACATCATGCTCTTCACTCC 60.093 50.000 0.00 0.00 0.00 3.85
2444 4277 3.257469 TGGACATCATGCTCTTCACTC 57.743 47.619 0.00 0.00 0.00 3.51
2445 4278 3.708403 TTGGACATCATGCTCTTCACT 57.292 42.857 0.00 0.00 0.00 3.41
2446 4279 3.503363 TGTTTGGACATCATGCTCTTCAC 59.497 43.478 0.00 0.00 0.00 3.18
2447 4280 3.753815 TGTTTGGACATCATGCTCTTCA 58.246 40.909 0.00 0.00 0.00 3.02
2448 4281 4.978083 ATGTTTGGACATCATGCTCTTC 57.022 40.909 0.00 0.00 42.83 2.87
2449 4282 5.337009 GGAAATGTTTGGACATCATGCTCTT 60.337 40.000 0.00 0.00 45.58 2.85
2450 4283 4.159135 GGAAATGTTTGGACATCATGCTCT 59.841 41.667 0.00 0.00 45.58 4.09
2451 4284 4.082081 TGGAAATGTTTGGACATCATGCTC 60.082 41.667 0.00 0.00 45.58 4.26
2452 4285 3.833650 TGGAAATGTTTGGACATCATGCT 59.166 39.130 0.00 0.00 45.58 3.79
2453 4286 3.928375 GTGGAAATGTTTGGACATCATGC 59.072 43.478 0.00 0.00 45.58 4.06
2454 4287 4.021280 TGGTGGAAATGTTTGGACATCATG 60.021 41.667 0.00 0.00 45.58 3.07
2455 4288 4.158786 TGGTGGAAATGTTTGGACATCAT 58.841 39.130 0.00 0.00 45.58 2.45
2456 4289 3.570540 TGGTGGAAATGTTTGGACATCA 58.429 40.909 0.00 0.00 45.58 3.07
2457 4290 4.599047 TTGGTGGAAATGTTTGGACATC 57.401 40.909 0.00 0.00 45.58 3.06
2459 4292 4.826274 TTTTGGTGGAAATGTTTGGACA 57.174 36.364 0.00 0.00 40.71 4.02
2460 4293 6.238621 GGAAATTTTGGTGGAAATGTTTGGAC 60.239 38.462 0.00 0.00 30.06 4.02
2461 4294 5.825151 GGAAATTTTGGTGGAAATGTTTGGA 59.175 36.000 0.00 0.00 30.06 3.53
2462 4295 5.591877 TGGAAATTTTGGTGGAAATGTTTGG 59.408 36.000 0.00 0.00 30.06 3.28
2463 4296 6.690194 TGGAAATTTTGGTGGAAATGTTTG 57.310 33.333 0.00 0.00 30.06 2.93
2464 4297 7.709149 TTTGGAAATTTTGGTGGAAATGTTT 57.291 28.000 0.00 0.00 30.06 2.83
2465 4298 7.709149 TTTTGGAAATTTTGGTGGAAATGTT 57.291 28.000 0.00 0.00 30.06 2.71
2466 4299 7.709149 TTTTTGGAAATTTTGGTGGAAATGT 57.291 28.000 0.00 0.00 30.06 2.71
2493 4326 4.713553 TGCTCTATTTGAAGTTGGTGACA 58.286 39.130 0.00 0.00 39.83 3.58
2496 4329 5.240891 TCTCTGCTCTATTTGAAGTTGGTG 58.759 41.667 0.00 0.00 0.00 4.17
2503 4336 9.512588 AAATCTTTTCTCTCTGCTCTATTTGAA 57.487 29.630 0.00 0.00 0.00 2.69
2507 4340 9.165035 CTTGAAATCTTTTCTCTCTGCTCTATT 57.835 33.333 2.08 0.00 0.00 1.73
2509 4342 7.901029 TCTTGAAATCTTTTCTCTCTGCTCTA 58.099 34.615 2.08 0.00 0.00 2.43
2510 4343 6.767456 TCTTGAAATCTTTTCTCTCTGCTCT 58.233 36.000 2.08 0.00 0.00 4.09
2511 4344 7.614124 ATCTTGAAATCTTTTCTCTCTGCTC 57.386 36.000 2.08 0.00 0.00 4.26
2513 4346 7.754475 GGAAATCTTGAAATCTTTTCTCTCTGC 59.246 37.037 2.08 0.00 0.00 4.26
2516 4349 7.363355 GGGGGAAATCTTGAAATCTTTTCTCTC 60.363 40.741 2.08 0.00 29.59 3.20
2518 4351 6.211384 TGGGGGAAATCTTGAAATCTTTTCTC 59.789 38.462 2.08 0.00 0.00 2.87
2521 4354 6.762077 TTGGGGGAAATCTTGAAATCTTTT 57.238 33.333 0.00 0.00 0.00 2.27
2522 4355 6.762077 TTTGGGGGAAATCTTGAAATCTTT 57.238 33.333 0.00 0.00 0.00 2.52
2523 4356 6.762077 TTTTGGGGGAAATCTTGAAATCTT 57.238 33.333 0.00 0.00 0.00 2.40
2524 4357 6.957853 ATTTTGGGGGAAATCTTGAAATCT 57.042 33.333 0.00 0.00 0.00 2.40
2525 4358 7.167535 TGAATTTTGGGGGAAATCTTGAAATC 58.832 34.615 0.00 0.00 0.00 2.17
2526 4359 7.017452 TCTGAATTTTGGGGGAAATCTTGAAAT 59.983 33.333 0.00 0.00 0.00 2.17
2527 4360 6.328672 TCTGAATTTTGGGGGAAATCTTGAAA 59.671 34.615 0.00 0.00 0.00 2.69
2528 4361 5.843421 TCTGAATTTTGGGGGAAATCTTGAA 59.157 36.000 0.00 0.00 0.00 2.69
2529 4362 5.401750 TCTGAATTTTGGGGGAAATCTTGA 58.598 37.500 0.00 0.00 0.00 3.02
2530 4363 5.743636 TCTGAATTTTGGGGGAAATCTTG 57.256 39.130 0.00 0.00 0.00 3.02
2533 4366 9.685276 AAAATAATCTGAATTTTGGGGGAAATC 57.315 29.630 0.52 0.00 35.69 2.17
2557 4390 8.194769 TCTACTATGCACGATGATAGTGAAAAA 58.805 33.333 9.92 0.00 41.83 1.94
2559 4392 7.013369 ACTCTACTATGCACGATGATAGTGAAA 59.987 37.037 9.92 0.00 41.83 2.69
2560 4393 6.486993 ACTCTACTATGCACGATGATAGTGAA 59.513 38.462 9.92 0.00 41.83 3.18
2563 4396 5.413213 GGACTCTACTATGCACGATGATAGT 59.587 44.000 0.00 0.00 38.61 2.12
2565 4398 5.313712 TGGACTCTACTATGCACGATGATA 58.686 41.667 0.00 0.00 0.00 2.15
2567 4400 3.551846 TGGACTCTACTATGCACGATGA 58.448 45.455 0.00 0.00 0.00 2.92
2568 4401 3.990318 TGGACTCTACTATGCACGATG 57.010 47.619 0.00 0.00 0.00 3.84
2569 4402 5.105310 AGTTTTGGACTCTACTATGCACGAT 60.105 40.000 0.00 0.00 31.20 3.73
2570 4403 4.219944 AGTTTTGGACTCTACTATGCACGA 59.780 41.667 0.00 0.00 31.20 4.35
2571 4404 4.495422 AGTTTTGGACTCTACTATGCACG 58.505 43.478 0.00 0.00 31.20 5.34
2572 4405 5.351740 GGAAGTTTTGGACTCTACTATGCAC 59.648 44.000 0.00 0.00 37.72 4.57
2574 4407 5.582665 CAGGAAGTTTTGGACTCTACTATGC 59.417 44.000 0.00 0.00 37.72 3.14
2575 4408 6.702329 ACAGGAAGTTTTGGACTCTACTATG 58.298 40.000 0.00 0.00 37.72 2.23
2577 4410 6.015350 CAGACAGGAAGTTTTGGACTCTACTA 60.015 42.308 0.00 0.00 37.72 1.82
2579 4412 4.991687 CAGACAGGAAGTTTTGGACTCTAC 59.008 45.833 0.00 0.00 37.72 2.59
2581 4414 3.745797 GCAGACAGGAAGTTTTGGACTCT 60.746 47.826 0.00 0.00 37.72 3.24
2584 4417 2.291741 CTGCAGACAGGAAGTTTTGGAC 59.708 50.000 8.42 0.00 40.48 4.02
2585 4418 2.575532 CTGCAGACAGGAAGTTTTGGA 58.424 47.619 8.42 0.00 40.48 3.53
2593 4426 6.745190 ATCATTAAGTGAACTGCAGACAGGAA 60.745 38.462 23.35 13.14 42.75 3.36
2594 4427 5.280164 ATCATTAAGTGAACTGCAGACAGGA 60.280 40.000 23.35 10.38 42.75 3.86
2595 4428 4.940046 ATCATTAAGTGAACTGCAGACAGG 59.060 41.667 23.35 0.00 42.75 4.00
2599 4432 8.846943 TTCTAAATCATTAAGTGAACTGCAGA 57.153 30.769 23.35 0.00 40.97 4.26
2600 4433 9.897744 TTTTCTAAATCATTAAGTGAACTGCAG 57.102 29.630 13.48 13.48 40.97 4.41
2607 4440 8.889717 GGACCGATTTTCTAAATCATTAAGTGA 58.110 33.333 11.43 0.00 42.06 3.41
2613 4446 7.938140 TTCTGGACCGATTTTCTAAATCATT 57.062 32.000 11.43 0.00 0.00 2.57
2622 4455 3.181510 CCACGAATTCTGGACCGATTTTC 60.182 47.826 15.10 0.00 0.00 2.29
2635 4468 4.046462 CCAATGCATCAATCCACGAATTC 58.954 43.478 0.00 0.00 0.00 2.17
2640 4473 2.164017 TGAACCAATGCATCAATCCACG 59.836 45.455 0.00 0.00 0.00 4.94
2642 4476 3.770388 ACATGAACCAATGCATCAATCCA 59.230 39.130 0.00 0.00 0.00 3.41
2647 4481 4.637091 CAGTAGACATGAACCAATGCATCA 59.363 41.667 0.00 0.00 0.00 3.07
2655 4494 7.482169 AGATTTACTCAGTAGACATGAACCA 57.518 36.000 0.00 0.00 0.00 3.67
2656 4495 7.819900 ACAAGATTTACTCAGTAGACATGAACC 59.180 37.037 0.00 0.00 0.00 3.62
2673 4512 7.119699 CAGCACCAGAAGTATGAACAAGATTTA 59.880 37.037 0.00 0.00 0.00 1.40
2678 4517 4.067896 ACAGCACCAGAAGTATGAACAAG 58.932 43.478 0.00 0.00 0.00 3.16
2686 4525 2.171659 TGGAAACACAGCACCAGAAGTA 59.828 45.455 0.00 0.00 33.40 2.24
2688 4527 1.679139 TGGAAACACAGCACCAGAAG 58.321 50.000 0.00 0.00 33.40 2.85
2689 4528 3.892633 TGGAAACACAGCACCAGAA 57.107 47.368 0.00 0.00 33.40 3.02
2704 4569 0.911769 CTGGGGTAGCAATCAGTGGA 59.088 55.000 0.00 0.00 0.00 4.02
2705 4570 0.620556 ACTGGGGTAGCAATCAGTGG 59.379 55.000 11.99 0.00 38.80 4.00
2707 4572 1.838077 GGTACTGGGGTAGCAATCAGT 59.162 52.381 15.48 15.48 43.51 3.41
2708 4573 2.622064 GGTACTGGGGTAGCAATCAG 57.378 55.000 0.00 1.15 43.51 2.90
2714 4579 4.432980 AATAACATGGTACTGGGGTAGC 57.567 45.455 0.00 0.00 44.08 3.58
2715 4580 6.419791 TCAAAATAACATGGTACTGGGGTAG 58.580 40.000 0.00 0.00 0.00 3.18
2716 4581 6.390048 TCAAAATAACATGGTACTGGGGTA 57.610 37.500 0.00 0.00 0.00 3.69
2717 4582 5.263872 TCAAAATAACATGGTACTGGGGT 57.736 39.130 0.00 0.00 0.00 4.95
2718 4583 6.379703 TCAATCAAAATAACATGGTACTGGGG 59.620 38.462 0.00 0.00 0.00 4.96
2719 4584 7.403312 TCAATCAAAATAACATGGTACTGGG 57.597 36.000 0.00 0.00 0.00 4.45
2720 4585 7.122650 ACCTCAATCAAAATAACATGGTACTGG 59.877 37.037 0.00 0.00 0.00 4.00
2721 4586 7.970061 CACCTCAATCAAAATAACATGGTACTG 59.030 37.037 0.00 0.00 0.00 2.74
2722 4587 7.122650 CCACCTCAATCAAAATAACATGGTACT 59.877 37.037 0.00 0.00 0.00 2.73
2723 4588 7.093945 ACCACCTCAATCAAAATAACATGGTAC 60.094 37.037 0.00 0.00 33.88 3.34
2724 4589 6.951198 ACCACCTCAATCAAAATAACATGGTA 59.049 34.615 0.00 0.00 33.88 3.25
2725 4590 5.779771 ACCACCTCAATCAAAATAACATGGT 59.220 36.000 0.00 0.00 0.00 3.55
2726 4591 6.101332 CACCACCTCAATCAAAATAACATGG 58.899 40.000 0.00 0.00 0.00 3.66
2727 4592 6.071447 TCCACCACCTCAATCAAAATAACATG 60.071 38.462 0.00 0.00 0.00 3.21
2728 4593 6.015918 TCCACCACCTCAATCAAAATAACAT 58.984 36.000 0.00 0.00 0.00 2.71
2729 4594 5.242838 GTCCACCACCTCAATCAAAATAACA 59.757 40.000 0.00 0.00 0.00 2.41
2730 4595 5.619086 CGTCCACCACCTCAATCAAAATAAC 60.619 44.000 0.00 0.00 0.00 1.89
2731 4596 4.457603 CGTCCACCACCTCAATCAAAATAA 59.542 41.667 0.00 0.00 0.00 1.40
2732 4597 4.006989 CGTCCACCACCTCAATCAAAATA 58.993 43.478 0.00 0.00 0.00 1.40
2733 4598 2.819608 CGTCCACCACCTCAATCAAAAT 59.180 45.455 0.00 0.00 0.00 1.82
2734 4599 2.226330 CGTCCACCACCTCAATCAAAA 58.774 47.619 0.00 0.00 0.00 2.44
2735 4600 1.544537 CCGTCCACCACCTCAATCAAA 60.545 52.381 0.00 0.00 0.00 2.69
2736 4601 0.036164 CCGTCCACCACCTCAATCAA 59.964 55.000 0.00 0.00 0.00 2.57
2737 4602 1.676968 CCGTCCACCACCTCAATCA 59.323 57.895 0.00 0.00 0.00 2.57
2738 4603 1.745489 GCCGTCCACCACCTCAATC 60.745 63.158 0.00 0.00 0.00 2.67
2739 4604 2.351276 GCCGTCCACCACCTCAAT 59.649 61.111 0.00 0.00 0.00 2.57
2740 4605 3.948719 GGCCGTCCACCACCTCAA 61.949 66.667 0.00 0.00 0.00 3.02
2742 4607 4.394712 CTGGCCGTCCACCACCTC 62.395 72.222 0.00 0.00 37.47 3.85
2743 4608 4.954118 TCTGGCCGTCCACCACCT 62.954 66.667 0.00 0.00 37.47 4.00
2744 4609 3.717294 ATCTGGCCGTCCACCACC 61.717 66.667 0.00 0.00 37.47 4.61
2745 4610 1.895020 TACATCTGGCCGTCCACCAC 61.895 60.000 0.00 0.00 37.47 4.16
2746 4611 0.980754 ATACATCTGGCCGTCCACCA 60.981 55.000 0.00 0.00 37.47 4.17
2747 4612 0.249911 GATACATCTGGCCGTCCACC 60.250 60.000 0.00 0.00 37.47 4.61
2748 4613 0.464036 TGATACATCTGGCCGTCCAC 59.536 55.000 0.00 0.00 37.47 4.02
2749 4614 0.752658 CTGATACATCTGGCCGTCCA 59.247 55.000 0.00 0.00 40.85 4.02
2750 4615 0.753262 ACTGATACATCTGGCCGTCC 59.247 55.000 0.00 0.00 0.00 4.79
2751 4616 1.409064 TCACTGATACATCTGGCCGTC 59.591 52.381 0.00 0.00 0.00 4.79
2752 4617 1.485124 TCACTGATACATCTGGCCGT 58.515 50.000 0.00 0.00 0.00 5.68
2753 4618 2.827800 ATCACTGATACATCTGGCCG 57.172 50.000 0.00 0.00 0.00 6.13
2754 4619 7.148340 GCTATTTTATCACTGATACATCTGGCC 60.148 40.741 0.00 0.00 0.00 5.36
2790 4656 1.403323 CGTGCAGAGAGATGCTGTCTA 59.597 52.381 0.00 0.00 46.63 2.59
2791 4657 0.173029 CGTGCAGAGAGATGCTGTCT 59.827 55.000 0.00 0.00 46.63 3.41
2801 4667 1.581934 CACTTTGGAACGTGCAGAGA 58.418 50.000 0.00 0.00 0.00 3.10
2806 4672 1.008538 CAGCCACTTTGGAACGTGC 60.009 57.895 0.00 0.00 40.96 5.34
2810 4676 0.459489 TGCAACAGCCACTTTGGAAC 59.541 50.000 0.00 0.00 40.96 3.62
2822 4712 8.932945 TCTACTAGTATGAAATTCTGCAACAG 57.067 34.615 2.33 0.00 0.00 3.16
2832 4722 7.397761 GGGGATGCTACTCTACTAGTATGAAAT 59.602 40.741 2.33 0.00 39.96 2.17
2841 4731 3.231818 GCAAGGGGATGCTACTCTACTA 58.768 50.000 0.00 0.00 43.06 1.82
2842 4732 2.043227 GCAAGGGGATGCTACTCTACT 58.957 52.381 0.00 0.00 43.06 2.57
2843 4733 1.762957 TGCAAGGGGATGCTACTCTAC 59.237 52.381 0.67 0.00 46.54 2.59
2844 4734 2.174685 TGCAAGGGGATGCTACTCTA 57.825 50.000 0.67 0.00 46.54 2.43
2845 4735 1.289160 TTGCAAGGGGATGCTACTCT 58.711 50.000 0.00 0.00 46.54 3.24
2846 4736 2.128771 TTTGCAAGGGGATGCTACTC 57.871 50.000 0.00 0.00 46.54 2.59
2847 4737 2.562738 GTTTTTGCAAGGGGATGCTACT 59.437 45.455 0.00 0.00 46.54 2.57
2848 4738 2.298729 TGTTTTTGCAAGGGGATGCTAC 59.701 45.455 0.00 0.00 46.54 3.58
2849 4739 2.562298 CTGTTTTTGCAAGGGGATGCTA 59.438 45.455 0.00 0.00 46.54 3.49
2850 4740 1.345415 CTGTTTTTGCAAGGGGATGCT 59.655 47.619 0.00 0.00 46.54 3.79
2851 4741 1.344114 TCTGTTTTTGCAAGGGGATGC 59.656 47.619 0.00 0.00 46.58 3.91
2852 4742 2.629617 ACTCTGTTTTTGCAAGGGGATG 59.370 45.455 0.00 0.00 0.00 3.51
2853 4743 2.962859 ACTCTGTTTTTGCAAGGGGAT 58.037 42.857 0.00 0.00 0.00 3.85
2854 4744 2.452600 ACTCTGTTTTTGCAAGGGGA 57.547 45.000 0.00 0.00 0.00 4.81
2855 4745 3.119849 CGATACTCTGTTTTTGCAAGGGG 60.120 47.826 0.00 0.00 0.00 4.79
2856 4746 3.670627 GCGATACTCTGTTTTTGCAAGGG 60.671 47.826 0.00 0.00 0.00 3.95
2857 4747 3.058293 TGCGATACTCTGTTTTTGCAAGG 60.058 43.478 0.00 0.00 0.00 3.61
2858 4748 4.145876 TGCGATACTCTGTTTTTGCAAG 57.854 40.909 0.00 0.00 0.00 4.01
2859 4749 4.764679 ATGCGATACTCTGTTTTTGCAA 57.235 36.364 0.00 0.00 34.45 4.08
2877 4793 1.334869 GATGATGGTGTCCCGAAATGC 59.665 52.381 0.00 0.00 0.00 3.56
2977 4922 7.674120 TGATATGAGGACATAAGATTCTGTGG 58.326 38.462 0.00 0.00 41.46 4.17
3127 5076 4.996788 AATGTTGATTGGCAAGGAGATC 57.003 40.909 5.96 0.00 37.12 2.75
3149 5098 1.076485 GGTAGTAGCTGGTCCCCGA 60.076 63.158 0.00 0.00 0.00 5.14
3172 5121 0.179059 GCTTCTTCCTAGCCTGGAGC 60.179 60.000 0.00 0.00 44.25 4.70
3173 5122 1.494960 AGCTTCTTCCTAGCCTGGAG 58.505 55.000 0.00 0.00 39.47 3.86
3680 5683 4.432980 TGAGTTCATCATGATCATGCCT 57.567 40.909 27.68 17.49 38.65 4.75
3831 5835 7.344095 AGATGCTAATTAACGTGGTAGTAGT 57.656 36.000 0.00 0.00 0.00 2.73
4023 10825 4.600012 AATAATTGTCCGCTCTTTCACG 57.400 40.909 0.00 0.00 0.00 4.35
4076 10895 3.584733 AGAACTTCCTCTGCTTTGGTT 57.415 42.857 0.00 0.00 0.00 3.67
4081 10906 7.001073 ACAAAAGATTAGAACTTCCTCTGCTT 58.999 34.615 0.00 0.00 0.00 3.91
4228 11056 3.936453 TGTATTGGGTCACGAAATAGTGC 59.064 43.478 0.00 0.00 41.61 4.40
4258 11086 4.117685 GCGGTCGATTAATAAGAGGTTGT 58.882 43.478 0.00 0.00 0.00 3.32
4278 11106 5.065218 AGCTGTTCTTAGTAATTGGATTGCG 59.935 40.000 0.00 0.00 0.00 4.85
4279 11107 6.442513 AGCTGTTCTTAGTAATTGGATTGC 57.557 37.500 0.00 0.00 0.00 3.56
4281 11109 6.316390 CCGAAGCTGTTCTTAGTAATTGGATT 59.684 38.462 0.00 0.00 34.56 3.01
4290 11118 3.470645 AACACCGAAGCTGTTCTTAGT 57.529 42.857 0.00 0.00 34.56 2.24
4307 11138 8.458573 AGACCAAATGTTGTCAGTAAATAACA 57.541 30.769 0.00 0.00 37.43 2.41
4323 11162 4.508461 TCTGCAACATCAAGACCAAATG 57.492 40.909 0.00 0.00 0.00 2.32
4324 11163 4.081862 CCATCTGCAACATCAAGACCAAAT 60.082 41.667 0.00 0.00 0.00 2.32
4585 11453 2.229784 GTGAATCTTGTGGCCTTCCTTG 59.770 50.000 3.32 0.00 0.00 3.61
4771 11639 2.389715 ACCTTGCTCGGTCTAGCTAAT 58.610 47.619 0.00 0.00 43.19 1.73
4884 11752 3.699134 GAACCCATCCAGGACGCCC 62.699 68.421 0.00 0.00 41.22 6.13
5113 11987 3.864789 AGAACACCAGGTGAATCTTGT 57.135 42.857 27.39 5.53 36.96 3.16
5114 11988 5.707298 ACATAAGAACACCAGGTGAATCTTG 59.293 40.000 33.06 26.36 40.39 3.02
5115 11989 5.707298 CACATAAGAACACCAGGTGAATCTT 59.293 40.000 30.75 30.75 41.67 2.40
5116 11990 5.221925 ACACATAAGAACACCAGGTGAATCT 60.222 40.000 27.39 23.22 36.96 2.40
5117 11991 5.003804 ACACATAAGAACACCAGGTGAATC 58.996 41.667 27.39 21.48 36.96 2.52
5118 11992 4.761739 CACACATAAGAACACCAGGTGAAT 59.238 41.667 27.39 14.25 36.96 2.57
5119 11993 4.133820 CACACATAAGAACACCAGGTGAA 58.866 43.478 27.39 6.23 36.96 3.18
5120 11994 3.389656 TCACACATAAGAACACCAGGTGA 59.610 43.478 27.39 3.12 36.96 4.02
5121 11995 3.738982 TCACACATAAGAACACCAGGTG 58.261 45.455 18.93 18.93 39.75 4.00
5122 11996 4.041567 TGATCACACATAAGAACACCAGGT 59.958 41.667 0.00 0.00 0.00 4.00
5123 11997 4.578871 TGATCACACATAAGAACACCAGG 58.421 43.478 0.00 0.00 0.00 4.45
5165 12039 0.873054 GCAGCGAGATGATTCCCATG 59.127 55.000 0.00 0.00 35.17 3.66
5167 12041 1.146930 GGCAGCGAGATGATTCCCA 59.853 57.895 0.00 0.00 0.00 4.37
5279 12204 6.183360 ACAAATCATATCCGAGACTGCTACTT 60.183 38.462 0.00 0.00 0.00 2.24
5281 12206 5.403766 CACAAATCATATCCGAGACTGCTAC 59.596 44.000 0.00 0.00 0.00 3.58
5282 12207 5.532557 CACAAATCATATCCGAGACTGCTA 58.467 41.667 0.00 0.00 0.00 3.49
5283 12208 4.375272 CACAAATCATATCCGAGACTGCT 58.625 43.478 0.00 0.00 0.00 4.24
5284 12209 3.059325 GCACAAATCATATCCGAGACTGC 60.059 47.826 0.00 0.00 0.00 4.40
5285 12210 4.375272 AGCACAAATCATATCCGAGACTG 58.625 43.478 0.00 0.00 0.00 3.51
5501 13675 1.288419 TTGTGTATGCGTCACAGCGG 61.288 55.000 9.93 0.00 44.71 5.52


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.