Multiple sequence alignment - TraesCS2D01G013800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2D01G013800 chr2D 100.000 3461 0 0 1 3461 6708428 6704968 0.000000e+00 6392.0
1 TraesCS2D01G013800 chr2A 95.427 2843 127 2 622 3461 4979117 4981959 0.000000e+00 4527.0
2 TraesCS2D01G013800 chr2A 90.047 422 28 8 1 415 4978680 4979094 5.080000e-148 534.0
3 TraesCS2D01G013800 chr2B 95.113 2844 136 1 621 3461 3291899 3289056 0.000000e+00 4479.0
4 TraesCS2D01G013800 chr4D 83.589 2474 328 35 648 3096 2957860 2955440 0.000000e+00 2248.0
5 TraesCS2D01G013800 chr4D 81.737 334 61 0 3128 3461 2955482 2955149 2.630000e-71 279.0
6 TraesCS2D01G013800 chr4D 81.022 137 19 4 478 609 509064527 509064393 6.110000e-18 102.0
7 TraesCS2D01G013800 chrUn 82.141 2223 329 34 648 2841 47831607 47833790 0.000000e+00 1844.0
8 TraesCS2D01G013800 chrUn 84.052 232 35 2 1 232 47831320 47831549 4.500000e-54 222.0
9 TraesCS2D01G013800 chrUn 82.857 140 24 0 2777 2916 47833798 47833937 3.630000e-25 126.0
10 TraesCS2D01G013800 chr5D 86.022 186 20 6 441 621 386689092 386689276 9.800000e-46 195.0
11 TraesCS2D01G013800 chr5D 80.795 151 25 4 473 621 69431703 69431851 7.850000e-22 115.0
12 TraesCS2D01G013800 chr7B 74.453 411 83 16 648 1047 713042145 713041746 1.290000e-34 158.0
13 TraesCS2D01G013800 chr7B 82.857 105 12 6 111 212 480694883 480694782 4.760000e-14 89.8
14 TraesCS2D01G013800 chr7B 91.935 62 5 0 569 630 402824733 402824672 1.710000e-13 87.9
15 TraesCS2D01G013800 chr7D 81.481 189 28 3 442 624 634071826 634072013 7.740000e-32 148.0
16 TraesCS2D01G013800 chr7D 73.494 415 90 13 647 1048 618488907 618488500 4.660000e-29 139.0
17 TraesCS2D01G013800 chr7D 77.778 180 32 6 449 622 463699738 463699915 1.700000e-18 104.0
18 TraesCS2D01G013800 chr7D 82.857 105 12 6 111 212 458726797 458726696 4.760000e-14 89.8
19 TraesCS2D01G013800 chr7A 73.659 410 92 13 647 1048 712180463 712180062 1.000000e-30 145.0
20 TraesCS2D01G013800 chr1A 80.791 177 24 8 456 623 497487134 497486959 2.800000e-26 130.0
21 TraesCS2D01G013800 chr1A 91.837 49 4 0 130 178 229169492 229169540 6.200000e-08 69.4
22 TraesCS2D01G013800 chr3B 79.581 191 26 8 442 622 263795908 263796095 1.300000e-24 124.0
23 TraesCS2D01G013800 chr6A 76.243 181 31 6 441 621 593564619 593564787 6.150000e-13 86.1
24 TraesCS2D01G013800 chr1D 89.062 64 7 0 569 632 10592722 10592785 2.860000e-11 80.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2D01G013800 chr2D 6704968 6708428 3460 True 6392.000000 6392 100.000000 1 3461 1 chr2D.!!$R1 3460
1 TraesCS2D01G013800 chr2A 4978680 4981959 3279 False 2530.500000 4527 92.737000 1 3461 2 chr2A.!!$F1 3460
2 TraesCS2D01G013800 chr2B 3289056 3291899 2843 True 4479.000000 4479 95.113000 621 3461 1 chr2B.!!$R1 2840
3 TraesCS2D01G013800 chr4D 2955149 2957860 2711 True 1263.500000 2248 82.663000 648 3461 2 chr4D.!!$R2 2813
4 TraesCS2D01G013800 chrUn 47831320 47833937 2617 False 730.666667 1844 83.016667 1 2916 3 chrUn.!!$F1 2915

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
192 193 1.133216 TCGCTCTTCTCGGTGATCTTG 59.867 52.381 0.0 0.0 0.00 3.02 F
1683 1721 0.883814 GCACAGACAGCTTGCTCAGT 60.884 55.000 0.0 0.0 33.26 3.41 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1716 1754 0.037590 TTAACCTCAGCCGCAATGGT 59.962 50.000 0.00 0.0 41.21 3.55 R
2863 2981 1.416401 GGATACAAAGATCTCCGGCCA 59.584 52.381 2.24 0.0 0.00 5.36 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
21 22 1.606601 CTCCTCCACCTCCGTGTCA 60.607 63.158 0.00 0.00 38.41 3.58
93 94 2.766651 ACCCAGTCCACCACGTGT 60.767 61.111 15.65 0.00 0.00 4.49
108 109 1.969589 GTGTTGCCCGTCCGGAATT 60.970 57.895 5.23 0.00 37.50 2.17
120 121 1.151777 CCGGAATTGTCGGGTCGATG 61.152 60.000 0.00 0.00 43.45 3.84
192 193 1.133216 TCGCTCTTCTCGGTGATCTTG 59.867 52.381 0.00 0.00 0.00 3.02
259 261 3.220674 TGTTCATGGATGGTGTGTTGA 57.779 42.857 0.00 0.00 0.00 3.18
262 264 2.513753 TCATGGATGGTGTGTTGAACC 58.486 47.619 0.00 0.00 38.26 3.62
272 274 5.355596 TGGTGTGTTGAACCATCATTTTTC 58.644 37.500 0.00 0.00 42.82 2.29
273 275 4.444056 GGTGTGTTGAACCATCATTTTTCG 59.556 41.667 0.00 0.00 37.65 3.46
274 276 5.277825 GTGTGTTGAACCATCATTTTTCGA 58.722 37.500 0.00 0.00 34.96 3.71
275 277 5.920273 GTGTGTTGAACCATCATTTTTCGAT 59.080 36.000 0.00 0.00 34.96 3.59
276 278 5.919707 TGTGTTGAACCATCATTTTTCGATG 59.080 36.000 0.00 0.00 40.01 3.84
285 288 5.220931 CCATCATTTTTCGATGAAGGTCCTC 60.221 44.000 0.00 0.00 42.39 3.71
346 354 7.100409 TCATGATAAATAATCCGACCGCATAA 58.900 34.615 0.00 0.00 33.22 1.90
347 355 6.715344 TGATAAATAATCCGACCGCATAAC 57.285 37.500 0.00 0.00 33.22 1.89
351 359 6.780706 AAATAATCCGACCGCATAACTAAG 57.219 37.500 0.00 0.00 0.00 2.18
373 381 5.713025 AGATGCATACAATCAAACACCAAC 58.287 37.500 0.00 0.00 0.00 3.77
374 382 4.926140 TGCATACAATCAAACACCAACA 57.074 36.364 0.00 0.00 0.00 3.33
375 383 5.268118 TGCATACAATCAAACACCAACAA 57.732 34.783 0.00 0.00 0.00 2.83
376 384 5.046529 TGCATACAATCAAACACCAACAAC 58.953 37.500 0.00 0.00 0.00 3.32
377 385 4.447389 GCATACAATCAAACACCAACAACC 59.553 41.667 0.00 0.00 0.00 3.77
378 386 5.738783 GCATACAATCAAACACCAACAACCT 60.739 40.000 0.00 0.00 0.00 3.50
379 387 4.122143 ACAATCAAACACCAACAACCTG 57.878 40.909 0.00 0.00 0.00 4.00
382 390 1.740585 TCAAACACCAACAACCTGACG 59.259 47.619 0.00 0.00 0.00 4.35
394 402 5.479716 ACAACCTGACGTAAGAAAACAAG 57.520 39.130 0.00 0.00 43.62 3.16
406 414 9.659830 ACGTAAGAAAACAAGAAACAACATATC 57.340 29.630 0.00 0.00 43.62 1.63
415 423 6.932400 ACAAGAAACAACATATCGGTAACAGA 59.068 34.615 0.00 0.00 0.00 3.41
419 427 8.308931 AGAAACAACATATCGGTAACAGACTAA 58.691 33.333 0.00 0.00 0.00 2.24
420 428 7.823149 AACAACATATCGGTAACAGACTAAC 57.177 36.000 0.00 0.00 0.00 2.34
421 429 6.927416 ACAACATATCGGTAACAGACTAACA 58.073 36.000 0.00 0.00 0.00 2.41
425 433 7.928103 ACATATCGGTAACAGACTAACAGTAG 58.072 38.462 0.00 0.00 0.00 2.57
427 435 5.869753 TCGGTAACAGACTAACAGTAGAC 57.130 43.478 0.00 0.00 0.00 2.59
452 460 4.737054 GCACTATGCATAACAGTTTTGCT 58.263 39.130 23.89 14.54 44.26 3.91
453 461 5.879237 GCACTATGCATAACAGTTTTGCTA 58.121 37.500 23.89 13.87 44.26 3.49
454 462 6.321717 GCACTATGCATAACAGTTTTGCTAA 58.678 36.000 23.89 13.80 44.26 3.09
455 463 6.470235 GCACTATGCATAACAGTTTTGCTAAG 59.530 38.462 23.89 21.47 44.26 2.18
456 464 7.530010 CACTATGCATAACAGTTTTGCTAAGT 58.470 34.615 23.89 21.94 37.28 2.24
457 465 7.693951 CACTATGCATAACAGTTTTGCTAAGTC 59.306 37.037 23.89 1.37 37.28 3.01
458 466 6.824305 ATGCATAACAGTTTTGCTAAGTCT 57.176 33.333 23.89 5.08 37.28 3.24
459 467 6.241207 TGCATAACAGTTTTGCTAAGTCTC 57.759 37.500 23.89 0.17 37.28 3.36
460 468 5.762711 TGCATAACAGTTTTGCTAAGTCTCA 59.237 36.000 23.89 4.23 37.28 3.27
461 469 6.262049 TGCATAACAGTTTTGCTAAGTCTCAA 59.738 34.615 23.89 3.63 37.28 3.02
462 470 7.040478 TGCATAACAGTTTTGCTAAGTCTCAAT 60.040 33.333 23.89 0.00 37.28 2.57
463 471 7.483059 GCATAACAGTTTTGCTAAGTCTCAATC 59.517 37.037 18.48 0.00 33.61 2.67
464 472 5.597813 ACAGTTTTGCTAAGTCTCAATCG 57.402 39.130 0.00 0.00 0.00 3.34
465 473 5.297547 ACAGTTTTGCTAAGTCTCAATCGA 58.702 37.500 0.00 0.00 0.00 3.59
466 474 5.177696 ACAGTTTTGCTAAGTCTCAATCGAC 59.822 40.000 0.00 0.00 0.00 4.20
467 475 5.406780 CAGTTTTGCTAAGTCTCAATCGACT 59.593 40.000 0.00 0.00 45.73 4.18
477 485 6.767524 AGTCTCAATCGACTTAGACTTCAT 57.232 37.500 15.87 0.14 44.81 2.57
478 486 7.164230 AGTCTCAATCGACTTAGACTTCATT 57.836 36.000 15.87 0.00 44.81 2.57
479 487 8.282455 AGTCTCAATCGACTTAGACTTCATTA 57.718 34.615 15.87 0.00 44.81 1.90
480 488 8.908903 AGTCTCAATCGACTTAGACTTCATTAT 58.091 33.333 15.87 0.00 44.81 1.28
481 489 8.963130 GTCTCAATCGACTTAGACTTCATTATG 58.037 37.037 13.04 0.00 36.32 1.90
482 490 8.687242 TCTCAATCGACTTAGACTTCATTATGT 58.313 33.333 0.00 0.00 0.00 2.29
483 491 8.858003 TCAATCGACTTAGACTTCATTATGTC 57.142 34.615 0.00 0.00 0.00 3.06
484 492 8.687242 TCAATCGACTTAGACTTCATTATGTCT 58.313 33.333 0.00 0.00 44.56 3.41
485 493 8.963130 CAATCGACTTAGACTTCATTATGTCTC 58.037 37.037 0.00 0.00 41.92 3.36
486 494 6.716438 TCGACTTAGACTTCATTATGTCTCG 58.284 40.000 0.00 0.00 41.92 4.04
487 495 5.910166 CGACTTAGACTTCATTATGTCTCGG 59.090 44.000 0.00 0.00 41.92 4.63
488 496 6.458478 CGACTTAGACTTCATTATGTCTCGGT 60.458 42.308 0.00 0.00 41.92 4.69
489 497 6.797454 ACTTAGACTTCATTATGTCTCGGTC 58.203 40.000 0.00 0.00 41.92 4.79
490 498 4.294416 AGACTTCATTATGTCTCGGTCG 57.706 45.455 0.00 0.00 39.04 4.79
491 499 3.945921 AGACTTCATTATGTCTCGGTCGA 59.054 43.478 0.00 0.00 39.04 4.20
492 500 4.580995 AGACTTCATTATGTCTCGGTCGAT 59.419 41.667 0.00 0.00 39.04 3.59
493 501 4.611943 ACTTCATTATGTCTCGGTCGATG 58.388 43.478 0.00 0.00 0.00 3.84
494 502 4.098044 ACTTCATTATGTCTCGGTCGATGT 59.902 41.667 0.00 0.00 0.00 3.06
495 503 4.649088 TCATTATGTCTCGGTCGATGTT 57.351 40.909 0.00 0.00 0.00 2.71
496 504 5.761165 TCATTATGTCTCGGTCGATGTTA 57.239 39.130 0.00 0.00 0.00 2.41
497 505 6.327279 TCATTATGTCTCGGTCGATGTTAT 57.673 37.500 0.00 0.00 0.00 1.89
498 506 6.745116 TCATTATGTCTCGGTCGATGTTATT 58.255 36.000 0.00 0.00 0.00 1.40
499 507 7.207383 TCATTATGTCTCGGTCGATGTTATTT 58.793 34.615 0.00 0.00 0.00 1.40
500 508 7.709182 TCATTATGTCTCGGTCGATGTTATTTT 59.291 33.333 0.00 0.00 0.00 1.82
501 509 8.974408 CATTATGTCTCGGTCGATGTTATTTTA 58.026 33.333 0.00 0.00 0.00 1.52
502 510 6.823678 ATGTCTCGGTCGATGTTATTTTAC 57.176 37.500 0.00 0.00 0.00 2.01
503 511 5.712004 TGTCTCGGTCGATGTTATTTTACA 58.288 37.500 0.00 0.00 0.00 2.41
504 512 6.334989 TGTCTCGGTCGATGTTATTTTACAT 58.665 36.000 0.00 0.00 41.30 2.29
505 513 6.814644 TGTCTCGGTCGATGTTATTTTACATT 59.185 34.615 0.00 0.00 38.80 2.71
506 514 7.117454 GTCTCGGTCGATGTTATTTTACATTG 58.883 38.462 0.00 0.00 38.80 2.82
507 515 7.009815 GTCTCGGTCGATGTTATTTTACATTGA 59.990 37.037 0.00 0.00 43.41 2.57
508 516 7.709182 TCTCGGTCGATGTTATTTTACATTGAT 59.291 33.333 9.26 0.00 45.78 2.57
509 517 7.847487 TCGGTCGATGTTATTTTACATTGATC 58.153 34.615 9.26 8.12 45.78 2.92
510 518 7.492994 TCGGTCGATGTTATTTTACATTGATCA 59.507 33.333 14.40 0.00 44.83 2.92
511 519 8.282592 CGGTCGATGTTATTTTACATTGATCAT 58.717 33.333 14.40 0.00 44.83 2.45
512 520 9.385902 GGTCGATGTTATTTTACATTGATCATG 57.614 33.333 10.82 0.00 45.78 3.07
513 521 8.895845 GTCGATGTTATTTTACATTGATCATGC 58.104 33.333 9.26 0.00 45.78 4.06
514 522 8.619546 TCGATGTTATTTTACATTGATCATGCA 58.380 29.630 0.00 0.00 41.69 3.96
515 523 9.401873 CGATGTTATTTTACATTGATCATGCAT 57.598 29.630 0.00 0.00 40.78 3.96
524 532 9.667989 TTTACATTGATCATGCATTTAGATTCG 57.332 29.630 0.00 0.00 36.14 3.34
525 533 7.268199 ACATTGATCATGCATTTAGATTCGT 57.732 32.000 0.00 0.00 36.14 3.85
526 534 8.382030 ACATTGATCATGCATTTAGATTCGTA 57.618 30.769 0.00 0.00 36.14 3.43
527 535 8.285394 ACATTGATCATGCATTTAGATTCGTAC 58.715 33.333 0.00 0.00 36.14 3.67
528 536 7.784633 TTGATCATGCATTTAGATTCGTACA 57.215 32.000 0.00 0.00 0.00 2.90
529 537 7.784633 TGATCATGCATTTAGATTCGTACAA 57.215 32.000 0.00 0.00 0.00 2.41
530 538 8.207521 TGATCATGCATTTAGATTCGTACAAA 57.792 30.769 0.00 0.00 0.00 2.83
531 539 8.672815 TGATCATGCATTTAGATTCGTACAAAA 58.327 29.630 0.00 0.00 0.00 2.44
532 540 9.669353 GATCATGCATTTAGATTCGTACAAAAT 57.331 29.630 0.00 0.00 0.00 1.82
534 542 9.853555 TCATGCATTTAGATTCGTACAAAATTT 57.146 25.926 0.00 0.00 0.00 1.82
537 545 9.906660 TGCATTTAGATTCGTACAAAATTTTCT 57.093 25.926 0.00 0.00 0.00 2.52
560 568 9.838975 TTCTTTTCAATTTTTCCTTTTTCTTGC 57.161 25.926 0.00 0.00 0.00 4.01
561 569 8.458052 TCTTTTCAATTTTTCCTTTTTCTTGCC 58.542 29.630 0.00 0.00 0.00 4.52
562 570 7.693969 TTTCAATTTTTCCTTTTTCTTGCCA 57.306 28.000 0.00 0.00 0.00 4.92
563 571 7.878547 TTCAATTTTTCCTTTTTCTTGCCAT 57.121 28.000 0.00 0.00 0.00 4.40
564 572 8.970859 TTCAATTTTTCCTTTTTCTTGCCATA 57.029 26.923 0.00 0.00 0.00 2.74
565 573 9.571816 TTCAATTTTTCCTTTTTCTTGCCATAT 57.428 25.926 0.00 0.00 0.00 1.78
569 577 9.875691 ATTTTTCCTTTTTCTTGCCATATACTC 57.124 29.630 0.00 0.00 0.00 2.59
570 578 8.415950 TTTTCCTTTTTCTTGCCATATACTCA 57.584 30.769 0.00 0.00 0.00 3.41
571 579 7.391148 TTCCTTTTTCTTGCCATATACTCAC 57.609 36.000 0.00 0.00 0.00 3.51
572 580 6.721318 TCCTTTTTCTTGCCATATACTCACT 58.279 36.000 0.00 0.00 0.00 3.41
573 581 6.823689 TCCTTTTTCTTGCCATATACTCACTC 59.176 38.462 0.00 0.00 0.00 3.51
574 582 6.238211 CCTTTTTCTTGCCATATACTCACTCG 60.238 42.308 0.00 0.00 0.00 4.18
575 583 5.592104 TTTCTTGCCATATACTCACTCGA 57.408 39.130 0.00 0.00 0.00 4.04
576 584 4.569761 TCTTGCCATATACTCACTCGAC 57.430 45.455 0.00 0.00 0.00 4.20
577 585 4.207955 TCTTGCCATATACTCACTCGACT 58.792 43.478 0.00 0.00 0.00 4.18
578 586 5.374071 TCTTGCCATATACTCACTCGACTA 58.626 41.667 0.00 0.00 0.00 2.59
579 587 5.826208 TCTTGCCATATACTCACTCGACTAA 59.174 40.000 0.00 0.00 0.00 2.24
580 588 5.690997 TGCCATATACTCACTCGACTAAG 57.309 43.478 0.00 0.00 0.00 2.18
581 589 5.374071 TGCCATATACTCACTCGACTAAGA 58.626 41.667 0.00 0.00 0.00 2.10
582 590 5.238868 TGCCATATACTCACTCGACTAAGAC 59.761 44.000 0.00 0.00 0.00 3.01
583 591 5.470777 GCCATATACTCACTCGACTAAGACT 59.529 44.000 0.00 0.00 0.00 3.24
584 592 6.016943 GCCATATACTCACTCGACTAAGACTT 60.017 42.308 0.00 0.00 0.00 3.01
585 593 7.356540 CCATATACTCACTCGACTAAGACTTG 58.643 42.308 0.00 0.00 0.00 3.16
586 594 5.821516 ATACTCACTCGACTAAGACTTGG 57.178 43.478 0.00 0.00 0.00 3.61
587 595 3.488363 ACTCACTCGACTAAGACTTGGT 58.512 45.455 3.54 3.54 0.00 3.67
588 596 3.890147 ACTCACTCGACTAAGACTTGGTT 59.110 43.478 5.60 0.00 0.00 3.67
589 597 5.068636 ACTCACTCGACTAAGACTTGGTTA 58.931 41.667 5.60 0.00 0.00 2.85
590 598 5.533903 ACTCACTCGACTAAGACTTGGTTAA 59.466 40.000 5.60 0.00 0.00 2.01
591 599 6.010294 TCACTCGACTAAGACTTGGTTAAG 57.990 41.667 5.60 8.72 39.86 1.85
602 610 4.931661 ACTTGGTTAAGTCTCAGTCGAA 57.068 40.909 0.00 0.00 43.53 3.71
603 611 5.470047 ACTTGGTTAAGTCTCAGTCGAAT 57.530 39.130 0.00 0.00 43.53 3.34
604 612 5.230942 ACTTGGTTAAGTCTCAGTCGAATG 58.769 41.667 6.51 6.51 43.53 2.67
605 613 5.010719 ACTTGGTTAAGTCTCAGTCGAATGA 59.989 40.000 15.60 15.60 43.53 2.57
606 614 5.060662 TGGTTAAGTCTCAGTCGAATGAG 57.939 43.478 31.52 31.52 46.70 2.90
607 615 8.871851 ACTTGGTTAAGTCTCAGTCGAATGAGA 61.872 40.741 34.63 34.63 43.53 3.27
615 623 3.951663 TCAGTCGAATGAGACCTAGACA 58.048 45.455 12.21 0.00 41.83 3.41
616 624 3.690139 TCAGTCGAATGAGACCTAGACAC 59.310 47.826 12.21 0.00 41.83 3.67
617 625 3.440522 CAGTCGAATGAGACCTAGACACA 59.559 47.826 7.15 0.00 41.83 3.72
618 626 3.440872 AGTCGAATGAGACCTAGACACAC 59.559 47.826 0.00 0.00 41.83 3.82
619 627 2.753452 TCGAATGAGACCTAGACACACC 59.247 50.000 0.00 0.00 0.00 4.16
633 641 3.264193 AGACACACCCTATGCAGAAATGA 59.736 43.478 0.00 0.00 0.00 2.57
651 659 3.866703 TGAAGGTTGGTTGACATACCA 57.133 42.857 5.66 5.66 46.23 3.25
759 767 4.827481 GCGATGTAGGCCTCGAAA 57.173 55.556 9.68 0.00 35.28 3.46
837 845 1.376683 GCCATGGTGAAGGTACGCA 60.377 57.895 14.67 0.00 0.00 5.24
840 848 1.338674 CCATGGTGAAGGTACGCAAGA 60.339 52.381 2.57 0.00 43.62 3.02
1590 1628 2.201732 GAGAAGTTGTTCTGCGACACA 58.798 47.619 0.00 0.00 43.50 3.72
1653 1691 3.183323 CCGGCGAACGCGTTGTAT 61.183 61.111 31.89 4.58 43.06 2.29
1668 1706 1.253100 TGTATGACAGGTCGAGCACA 58.747 50.000 18.15 13.63 0.00 4.57
1683 1721 0.883814 GCACAGACAGCTTGCTCAGT 60.884 55.000 0.00 0.00 33.26 3.41
2121 2167 1.786937 AGACGATGCTCTTCATCCCT 58.213 50.000 0.00 0.00 46.93 4.20
2343 2389 3.257561 CTCGCCATCGACGCAAGG 61.258 66.667 7.07 0.00 40.21 3.61
2435 2481 2.835431 CTCCGTCGGGATGAGGCT 60.835 66.667 12.29 0.00 42.83 4.58
2460 2506 1.285950 CTCGTTGGTGTCGAGCTGA 59.714 57.895 0.00 0.00 45.77 4.26
2604 2650 2.325661 TGGAGTTGATGGAGAGGTCA 57.674 50.000 0.00 0.00 0.00 4.02
2877 2995 1.524482 GAGCTGGCCGGAGATCTTT 59.476 57.895 18.31 0.00 0.00 2.52
2880 2998 0.178068 GCTGGCCGGAGATCTTTGTA 59.822 55.000 18.31 0.00 0.00 2.41
2910 3028 1.376553 GAGCACCTCAAGGCTGGAC 60.377 63.158 0.00 0.00 41.22 4.02
3055 3173 1.004440 AGCAGGTTCTTCAGCGACC 60.004 57.895 0.00 0.00 0.00 4.79
3110 3228 1.230324 GAGAGCAGGTTGGTGTTGAC 58.770 55.000 0.00 0.00 0.00 3.18
3123 3241 1.668151 GTTGACCACCAGCGACTCC 60.668 63.158 0.00 0.00 0.00 3.85
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
15 16 4.742201 CAGGGGCGGTCTGACACG 62.742 72.222 10.38 11.54 29.51 4.49
93 94 1.673009 GACAATTCCGGACGGGCAA 60.673 57.895 1.83 0.00 34.94 4.52
105 106 1.451387 GCCCATCGACCCGACAATT 60.451 57.895 0.00 0.00 39.18 2.32
108 109 3.770040 CAGCCCATCGACCCGACA 61.770 66.667 0.00 0.00 39.18 4.35
192 193 1.536284 GCAGAGTACGGGTACATGCTC 60.536 57.143 21.81 8.90 42.57 4.26
262 264 5.587844 AGAGGACCTTCATCGAAAAATGATG 59.412 40.000 0.00 0.00 43.62 3.07
272 274 9.595823 TTAAGTTAATAAAGAGGACCTTCATCG 57.404 33.333 0.00 0.00 31.60 3.84
302 305 7.477144 TCATGATGTTTTCGATTAACGCTAT 57.523 32.000 0.00 0.00 42.26 2.97
315 318 8.289618 CGGTCGGATTATTTATCATGATGTTTT 58.710 33.333 18.72 3.32 34.77 2.43
335 340 1.792949 GCATCTTAGTTATGCGGTCGG 59.207 52.381 0.00 0.00 40.27 4.79
346 354 6.658816 TGGTGTTTGATTGTATGCATCTTAGT 59.341 34.615 0.19 0.00 0.00 2.24
347 355 7.087409 TGGTGTTTGATTGTATGCATCTTAG 57.913 36.000 0.19 0.00 0.00 2.18
351 359 5.468592 TGTTGGTGTTTGATTGTATGCATC 58.531 37.500 0.19 0.00 0.00 3.91
357 365 4.950475 TCAGGTTGTTGGTGTTTGATTGTA 59.050 37.500 0.00 0.00 0.00 2.41
373 381 5.728351 TCTTGTTTTCTTACGTCAGGTTG 57.272 39.130 0.00 0.00 0.00 3.77
374 382 6.149807 TGTTTCTTGTTTTCTTACGTCAGGTT 59.850 34.615 0.00 0.00 0.00 3.50
375 383 5.644636 TGTTTCTTGTTTTCTTACGTCAGGT 59.355 36.000 0.00 0.00 0.00 4.00
376 384 6.114221 TGTTTCTTGTTTTCTTACGTCAGG 57.886 37.500 0.00 0.00 0.00 3.86
377 385 7.018826 TGTTGTTTCTTGTTTTCTTACGTCAG 58.981 34.615 0.00 0.00 0.00 3.51
378 386 6.900189 TGTTGTTTCTTGTTTTCTTACGTCA 58.100 32.000 0.00 0.00 0.00 4.35
379 387 7.964545 ATGTTGTTTCTTGTTTTCTTACGTC 57.035 32.000 0.00 0.00 0.00 4.34
382 390 9.113876 CCGATATGTTGTTTCTTGTTTTCTTAC 57.886 33.333 0.00 0.00 0.00 2.34
394 402 6.963049 AGTCTGTTACCGATATGTTGTTTC 57.037 37.500 0.00 0.00 0.00 2.78
406 414 5.391736 CCAGTCTACTGTTAGTCTGTTACCG 60.392 48.000 9.17 0.00 42.27 4.02
415 423 4.142138 GCATAGTGCCAGTCTACTGTTAGT 60.142 45.833 9.17 3.61 42.27 2.24
419 427 2.179427 TGCATAGTGCCAGTCTACTGT 58.821 47.619 9.17 0.00 44.23 3.55
420 428 2.967599 TGCATAGTGCCAGTCTACTG 57.032 50.000 3.02 3.02 44.23 2.74
421 429 4.405680 TGTTATGCATAGTGCCAGTCTACT 59.594 41.667 6.50 0.00 44.23 2.57
425 433 3.535561 ACTGTTATGCATAGTGCCAGTC 58.464 45.455 17.55 2.90 44.23 3.51
427 435 4.970662 AAACTGTTATGCATAGTGCCAG 57.029 40.909 6.50 13.08 44.23 4.85
430 438 4.737054 AGCAAAACTGTTATGCATAGTGC 58.263 39.130 6.50 8.95 45.29 4.40
432 440 7.607991 AGACTTAGCAAAACTGTTATGCATAGT 59.392 33.333 6.50 0.19 42.45 2.12
433 441 7.978982 AGACTTAGCAAAACTGTTATGCATAG 58.021 34.615 6.50 0.00 42.45 2.23
434 442 7.606073 TGAGACTTAGCAAAACTGTTATGCATA 59.394 33.333 1.16 1.16 42.45 3.14
437 445 6.241207 TGAGACTTAGCAAAACTGTTATGC 57.759 37.500 0.00 0.00 40.34 3.14
438 446 7.689812 CGATTGAGACTTAGCAAAACTGTTATG 59.310 37.037 0.00 0.00 0.00 1.90
439 447 7.602644 TCGATTGAGACTTAGCAAAACTGTTAT 59.397 33.333 0.00 0.00 0.00 1.89
440 448 6.926826 TCGATTGAGACTTAGCAAAACTGTTA 59.073 34.615 0.00 0.00 0.00 2.41
441 449 5.758296 TCGATTGAGACTTAGCAAAACTGTT 59.242 36.000 0.00 0.00 0.00 3.16
442 450 5.177696 GTCGATTGAGACTTAGCAAAACTGT 59.822 40.000 0.00 0.00 38.09 3.55
443 451 5.612865 GTCGATTGAGACTTAGCAAAACTG 58.387 41.667 0.00 0.00 38.09 3.16
444 452 5.847670 GTCGATTGAGACTTAGCAAAACT 57.152 39.130 0.00 0.00 38.09 2.66
455 463 8.963130 CATAATGAAGTCTAAGTCGATTGAGAC 58.037 37.037 15.91 15.91 41.23 3.36
456 464 8.687242 ACATAATGAAGTCTAAGTCGATTGAGA 58.313 33.333 0.00 0.00 0.00 3.27
457 465 8.864069 ACATAATGAAGTCTAAGTCGATTGAG 57.136 34.615 0.00 0.00 0.00 3.02
458 466 8.687242 AGACATAATGAAGTCTAAGTCGATTGA 58.313 33.333 0.00 0.00 42.92 2.57
459 467 8.864069 AGACATAATGAAGTCTAAGTCGATTG 57.136 34.615 0.00 0.00 42.92 2.67
460 468 7.858382 CGAGACATAATGAAGTCTAAGTCGATT 59.142 37.037 0.00 0.00 44.61 3.34
461 469 7.356540 CGAGACATAATGAAGTCTAAGTCGAT 58.643 38.462 0.00 0.00 44.61 3.59
462 470 6.238402 CCGAGACATAATGAAGTCTAAGTCGA 60.238 42.308 0.00 0.00 44.61 4.20
463 471 5.910166 CCGAGACATAATGAAGTCTAAGTCG 59.090 44.000 0.00 0.00 44.61 4.18
464 472 6.797454 ACCGAGACATAATGAAGTCTAAGTC 58.203 40.000 0.00 0.00 44.61 3.01
465 473 6.458478 CGACCGAGACATAATGAAGTCTAAGT 60.458 42.308 0.00 0.00 44.61 2.24
466 474 5.910166 CGACCGAGACATAATGAAGTCTAAG 59.090 44.000 0.00 0.00 44.61 2.18
467 475 5.587443 TCGACCGAGACATAATGAAGTCTAA 59.413 40.000 0.00 0.00 44.61 2.10
468 476 5.121105 TCGACCGAGACATAATGAAGTCTA 58.879 41.667 0.00 0.00 44.61 2.59
470 478 4.288670 TCGACCGAGACATAATGAAGTC 57.711 45.455 0.00 0.00 35.02 3.01
471 479 4.098044 ACATCGACCGAGACATAATGAAGT 59.902 41.667 0.00 0.00 0.00 3.01
472 480 4.611943 ACATCGACCGAGACATAATGAAG 58.388 43.478 0.00 0.00 0.00 3.02
473 481 4.649088 ACATCGACCGAGACATAATGAA 57.351 40.909 0.00 0.00 0.00 2.57
474 482 4.649088 AACATCGACCGAGACATAATGA 57.351 40.909 0.00 0.00 0.00 2.57
475 483 7.408132 AAATAACATCGACCGAGACATAATG 57.592 36.000 0.00 0.00 0.00 1.90
476 484 8.975439 GTAAAATAACATCGACCGAGACATAAT 58.025 33.333 0.00 0.00 0.00 1.28
477 485 7.975058 TGTAAAATAACATCGACCGAGACATAA 59.025 33.333 0.00 0.00 0.00 1.90
478 486 7.482474 TGTAAAATAACATCGACCGAGACATA 58.518 34.615 0.00 0.00 0.00 2.29
479 487 6.334989 TGTAAAATAACATCGACCGAGACAT 58.665 36.000 0.00 0.00 0.00 3.06
480 488 5.712004 TGTAAAATAACATCGACCGAGACA 58.288 37.500 0.00 0.00 0.00 3.41
481 489 6.823678 ATGTAAAATAACATCGACCGAGAC 57.176 37.500 0.00 0.00 35.08 3.36
482 490 7.036829 TCAATGTAAAATAACATCGACCGAGA 58.963 34.615 0.00 0.00 39.16 4.04
483 491 7.229228 TCAATGTAAAATAACATCGACCGAG 57.771 36.000 0.00 0.00 39.16 4.63
484 492 7.492994 TGATCAATGTAAAATAACATCGACCGA 59.507 33.333 0.00 0.00 39.16 4.69
485 493 7.626446 TGATCAATGTAAAATAACATCGACCG 58.374 34.615 0.00 0.00 39.16 4.79
486 494 9.385902 CATGATCAATGTAAAATAACATCGACC 57.614 33.333 0.00 0.00 39.16 4.79
487 495 8.895845 GCATGATCAATGTAAAATAACATCGAC 58.104 33.333 0.00 0.00 39.16 4.20
488 496 8.619546 TGCATGATCAATGTAAAATAACATCGA 58.380 29.630 0.00 0.00 39.16 3.59
489 497 8.785468 TGCATGATCAATGTAAAATAACATCG 57.215 30.769 0.00 0.00 39.16 3.84
498 506 9.667989 CGAATCTAAATGCATGATCAATGTAAA 57.332 29.630 0.00 0.00 38.65 2.01
499 507 8.839343 ACGAATCTAAATGCATGATCAATGTAA 58.161 29.630 0.00 0.00 38.65 2.41
500 508 8.382030 ACGAATCTAAATGCATGATCAATGTA 57.618 30.769 0.00 0.00 38.65 2.29
501 509 7.268199 ACGAATCTAAATGCATGATCAATGT 57.732 32.000 0.00 0.00 38.65 2.71
502 510 8.284693 TGTACGAATCTAAATGCATGATCAATG 58.715 33.333 0.00 0.00 39.49 2.82
503 511 8.382030 TGTACGAATCTAAATGCATGATCAAT 57.618 30.769 0.00 0.00 0.00 2.57
504 512 7.784633 TGTACGAATCTAAATGCATGATCAA 57.215 32.000 0.00 0.00 0.00 2.57
505 513 7.784633 TTGTACGAATCTAAATGCATGATCA 57.215 32.000 0.00 0.00 0.00 2.92
506 514 9.669353 ATTTTGTACGAATCTAAATGCATGATC 57.331 29.630 0.00 0.00 0.00 2.92
508 516 9.853555 AAATTTTGTACGAATCTAAATGCATGA 57.146 25.926 0.00 0.00 0.00 3.07
511 519 9.906660 AGAAAATTTTGTACGAATCTAAATGCA 57.093 25.926 8.47 0.00 0.00 3.96
534 542 9.838975 GCAAGAAAAAGGAAAAATTGAAAAGAA 57.161 25.926 0.00 0.00 0.00 2.52
535 543 8.458052 GGCAAGAAAAAGGAAAAATTGAAAAGA 58.542 29.630 0.00 0.00 0.00 2.52
536 544 8.242739 TGGCAAGAAAAAGGAAAAATTGAAAAG 58.757 29.630 0.00 0.00 0.00 2.27
537 545 8.115490 TGGCAAGAAAAAGGAAAAATTGAAAA 57.885 26.923 0.00 0.00 0.00 2.29
538 546 7.693969 TGGCAAGAAAAAGGAAAAATTGAAA 57.306 28.000 0.00 0.00 0.00 2.69
539 547 7.878547 ATGGCAAGAAAAAGGAAAAATTGAA 57.121 28.000 0.00 0.00 0.00 2.69
543 551 9.875691 GAGTATATGGCAAGAAAAAGGAAAAAT 57.124 29.630 0.00 0.00 0.00 1.82
544 552 8.865090 TGAGTATATGGCAAGAAAAAGGAAAAA 58.135 29.630 0.00 0.00 0.00 1.94
545 553 8.303876 GTGAGTATATGGCAAGAAAAAGGAAAA 58.696 33.333 0.00 0.00 0.00 2.29
546 554 7.669722 AGTGAGTATATGGCAAGAAAAAGGAAA 59.330 33.333 0.00 0.00 0.00 3.13
547 555 7.175104 AGTGAGTATATGGCAAGAAAAAGGAA 58.825 34.615 0.00 0.00 0.00 3.36
548 556 6.721318 AGTGAGTATATGGCAAGAAAAAGGA 58.279 36.000 0.00 0.00 0.00 3.36
549 557 6.238211 CGAGTGAGTATATGGCAAGAAAAAGG 60.238 42.308 0.00 0.00 0.00 3.11
550 558 6.535150 TCGAGTGAGTATATGGCAAGAAAAAG 59.465 38.462 0.00 0.00 0.00 2.27
551 559 6.312918 GTCGAGTGAGTATATGGCAAGAAAAA 59.687 38.462 0.00 0.00 0.00 1.94
552 560 5.810587 GTCGAGTGAGTATATGGCAAGAAAA 59.189 40.000 0.00 0.00 0.00 2.29
553 561 5.127194 AGTCGAGTGAGTATATGGCAAGAAA 59.873 40.000 0.00 0.00 0.00 2.52
554 562 4.645136 AGTCGAGTGAGTATATGGCAAGAA 59.355 41.667 0.00 0.00 0.00 2.52
555 563 4.207955 AGTCGAGTGAGTATATGGCAAGA 58.792 43.478 0.00 0.00 0.00 3.02
556 564 4.576216 AGTCGAGTGAGTATATGGCAAG 57.424 45.455 0.00 0.00 0.00 4.01
557 565 5.826208 TCTTAGTCGAGTGAGTATATGGCAA 59.174 40.000 11.41 0.00 30.25 4.52
558 566 5.238868 GTCTTAGTCGAGTGAGTATATGGCA 59.761 44.000 11.41 0.00 30.25 4.92
559 567 5.470777 AGTCTTAGTCGAGTGAGTATATGGC 59.529 44.000 11.41 0.00 30.25 4.40
560 568 7.356540 CAAGTCTTAGTCGAGTGAGTATATGG 58.643 42.308 11.41 0.00 30.25 2.74
561 569 7.012515 ACCAAGTCTTAGTCGAGTGAGTATATG 59.987 40.741 11.41 7.20 30.25 1.78
562 570 7.055378 ACCAAGTCTTAGTCGAGTGAGTATAT 58.945 38.462 11.41 0.00 30.25 0.86
563 571 6.413052 ACCAAGTCTTAGTCGAGTGAGTATA 58.587 40.000 11.41 0.00 30.25 1.47
564 572 5.254901 ACCAAGTCTTAGTCGAGTGAGTAT 58.745 41.667 11.41 0.00 30.25 2.12
565 573 4.649692 ACCAAGTCTTAGTCGAGTGAGTA 58.350 43.478 11.41 0.00 0.00 2.59
566 574 3.488363 ACCAAGTCTTAGTCGAGTGAGT 58.512 45.455 11.41 0.00 0.00 3.41
567 575 4.506886 AACCAAGTCTTAGTCGAGTGAG 57.493 45.455 5.70 5.70 0.00 3.51
568 576 5.533903 ACTTAACCAAGTCTTAGTCGAGTGA 59.466 40.000 2.10 0.00 41.25 3.41
569 577 5.770417 ACTTAACCAAGTCTTAGTCGAGTG 58.230 41.667 2.10 0.00 41.25 3.51
581 589 8.871851 TCTCATTCGACTGAGACTTAACCAAGT 61.872 40.741 26.33 0.00 45.13 3.16
582 590 5.470368 TCATTCGACTGAGACTTAACCAAG 58.530 41.667 0.65 0.00 37.81 3.61
583 591 5.243060 TCTCATTCGACTGAGACTTAACCAA 59.757 40.000 26.33 6.23 45.13 3.67
584 592 4.765339 TCTCATTCGACTGAGACTTAACCA 59.235 41.667 26.33 6.86 45.13 3.67
585 593 5.312120 TCTCATTCGACTGAGACTTAACC 57.688 43.478 26.33 0.00 45.13 2.85
593 601 3.942115 TGTCTAGGTCTCATTCGACTGAG 59.058 47.826 22.96 22.96 43.33 3.35
594 602 3.690139 GTGTCTAGGTCTCATTCGACTGA 59.310 47.826 5.28 5.28 34.38 3.41
595 603 3.440522 TGTGTCTAGGTCTCATTCGACTG 59.559 47.826 0.00 0.00 34.38 3.51
596 604 3.440872 GTGTGTCTAGGTCTCATTCGACT 59.559 47.826 0.00 0.00 34.38 4.18
597 605 3.427773 GGTGTGTCTAGGTCTCATTCGAC 60.428 52.174 0.00 0.00 0.00 4.20
598 606 2.753452 GGTGTGTCTAGGTCTCATTCGA 59.247 50.000 0.00 0.00 0.00 3.71
599 607 2.159226 GGGTGTGTCTAGGTCTCATTCG 60.159 54.545 0.00 0.00 0.00 3.34
600 608 3.100671 AGGGTGTGTCTAGGTCTCATTC 58.899 50.000 0.00 0.00 0.00 2.67
601 609 3.191888 AGGGTGTGTCTAGGTCTCATT 57.808 47.619 0.00 0.00 0.00 2.57
602 610 2.930109 AGGGTGTGTCTAGGTCTCAT 57.070 50.000 0.00 0.00 0.00 2.90
603 611 3.632333 CATAGGGTGTGTCTAGGTCTCA 58.368 50.000 0.00 0.00 0.00 3.27
604 612 2.362717 GCATAGGGTGTGTCTAGGTCTC 59.637 54.545 0.00 0.00 0.00 3.36
605 613 2.292257 TGCATAGGGTGTGTCTAGGTCT 60.292 50.000 0.00 0.00 0.00 3.85
606 614 2.101582 CTGCATAGGGTGTGTCTAGGTC 59.898 54.545 0.00 0.00 0.00 3.85
607 615 2.111384 CTGCATAGGGTGTGTCTAGGT 58.889 52.381 0.00 0.00 0.00 3.08
608 616 2.388735 TCTGCATAGGGTGTGTCTAGG 58.611 52.381 0.00 0.00 0.00 3.02
609 617 4.471904 TTTCTGCATAGGGTGTGTCTAG 57.528 45.455 0.00 0.00 0.00 2.43
610 618 4.469586 TCATTTCTGCATAGGGTGTGTCTA 59.530 41.667 0.00 0.00 0.00 2.59
611 619 3.264193 TCATTTCTGCATAGGGTGTGTCT 59.736 43.478 0.00 0.00 0.00 3.41
612 620 3.609853 TCATTTCTGCATAGGGTGTGTC 58.390 45.455 0.00 0.00 0.00 3.67
613 621 3.719268 TCATTTCTGCATAGGGTGTGT 57.281 42.857 0.00 0.00 0.00 3.72
614 622 3.379372 CCTTCATTTCTGCATAGGGTGTG 59.621 47.826 0.00 0.00 0.00 3.82
615 623 3.010584 ACCTTCATTTCTGCATAGGGTGT 59.989 43.478 0.00 0.00 0.00 4.16
616 624 3.624777 ACCTTCATTTCTGCATAGGGTG 58.375 45.455 0.00 0.00 0.00 4.61
617 625 4.019174 CAACCTTCATTTCTGCATAGGGT 58.981 43.478 0.00 0.00 0.00 4.34
618 626 3.382546 CCAACCTTCATTTCTGCATAGGG 59.617 47.826 0.00 0.00 0.00 3.53
619 627 4.019174 ACCAACCTTCATTTCTGCATAGG 58.981 43.478 0.00 0.00 0.00 2.57
765 773 1.382522 CCAACAACATCCTCATCGGG 58.617 55.000 0.00 0.00 0.00 5.14
822 830 1.338769 GGTCTTGCGTACCTTCACCAT 60.339 52.381 0.00 0.00 33.97 3.55
828 836 0.034896 CACAGGGTCTTGCGTACCTT 59.965 55.000 2.41 0.00 37.18 3.50
837 845 3.637273 GGGTCGGCACAGGGTCTT 61.637 66.667 0.00 0.00 0.00 3.01
1095 1127 2.671177 CGTGAAGAAGCTGTGGCCG 61.671 63.158 0.00 0.00 39.73 6.13
1590 1628 1.002087 GACAACCTCGTCACCCTCAAT 59.998 52.381 0.00 0.00 35.88 2.57
1653 1691 1.106944 TGTCTGTGCTCGACCTGTCA 61.107 55.000 0.00 0.00 0.00 3.58
1668 1706 1.139654 TCACAACTGAGCAAGCTGTCT 59.860 47.619 0.00 0.00 32.77 3.41
1683 1721 0.757561 TCCCGGCGAGGATATCACAA 60.758 55.000 9.30 0.00 45.00 3.33
1686 1724 4.865629 ATCCCGGCGAGGATATCA 57.134 55.556 22.80 2.45 45.14 2.15
1710 1748 2.045926 AGCCGCAATGGTCTCACC 60.046 61.111 0.00 0.00 41.21 4.02
1716 1754 0.037590 TTAACCTCAGCCGCAATGGT 59.962 50.000 0.00 0.00 41.21 3.55
1908 1946 1.750399 CCCCGTGCCAGAATCCTTG 60.750 63.158 0.00 0.00 0.00 3.61
2091 2137 0.173708 GCATCGTCTTCCTCGACCTT 59.826 55.000 0.00 0.00 40.07 3.50
2295 2341 2.649034 GACCTCTCGCACAACCGA 59.351 61.111 0.00 0.00 35.68 4.69
2423 2469 0.829602 GATCTCCAGCCTCATCCCGA 60.830 60.000 0.00 0.00 0.00 5.14
2435 2481 0.526211 CGACACCAACGAGATCTCCA 59.474 55.000 17.13 0.00 0.00 3.86
2796 2842 3.615110 CGATATACACCACCATGCTCTCC 60.615 52.174 0.00 0.00 0.00 3.71
2863 2981 1.416401 GGATACAAAGATCTCCGGCCA 59.584 52.381 2.24 0.00 0.00 5.36
2877 2995 3.592814 CTCGGCCTCGCGGATACA 61.593 66.667 6.13 0.00 37.27 2.29
2910 3028 1.649664 CCGACTCATTCTCCAAGCTG 58.350 55.000 0.00 0.00 0.00 4.24
3087 3205 4.021925 ACCAACCTGCTCTCCGGC 62.022 66.667 0.00 0.00 0.00 6.13
3123 3241 4.389576 GGCAACTTGACGGCGCTG 62.390 66.667 16.39 16.39 0.00 5.18
3234 3352 2.100631 GTCGGATGCCAACCTGACG 61.101 63.158 1.65 0.00 0.00 4.35


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.