Multiple sequence alignment - TraesCS2D01G013500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2D01G013500 chr2D 100.000 7541 0 0 1 7541 6657877 6665417 0.000000e+00 13926.0
1 TraesCS2D01G013500 chr2D 98.004 1052 17 4 4539 5587 356048297 356047247 0.000000e+00 1823.0
2 TraesCS2D01G013500 chr2D 87.962 731 60 12 2772 3496 5541057 5540349 0.000000e+00 837.0
3 TraesCS2D01G013500 chr2D 86.630 733 71 11 2770 3496 5518886 5518175 0.000000e+00 785.0
4 TraesCS2D01G013500 chr2D 86.786 560 50 17 5748 6299 5540351 5539808 3.010000e-168 603.0
5 TraesCS2D01G013500 chr2D 82.232 681 95 18 5748 6421 5518177 5517516 1.420000e-156 564.0
6 TraesCS2D01G013500 chr2D 89.796 98 8 1 6874 6971 557267171 557267266 2.860000e-24 124.0
7 TraesCS2D01G013500 chr2D 90.000 90 6 2 6884 6971 449065495 449065583 6.180000e-21 113.0
8 TraesCS2D01G013500 chr2D 83.036 112 5 7 7424 7521 6647432 6647543 1.040000e-13 89.8
9 TraesCS2D01G013500 chr2D 98.039 51 1 0 5586 5636 643738277 643738227 1.040000e-13 89.8
10 TraesCS2D01G013500 chr2D 98.000 50 1 0 4490 4539 6663511 6663462 3.750000e-13 87.9
11 TraesCS2D01G013500 chr2D 90.476 63 4 2 5586 5647 389094978 389094917 1.740000e-11 82.4
12 TraesCS2D01G013500 chr2B 87.447 2804 272 49 4 2770 3313723 3310963 0.000000e+00 3155.0
13 TraesCS2D01G013500 chr2B 90.834 1331 77 18 2769 4084 3310925 3309625 0.000000e+00 1740.0
14 TraesCS2D01G013500 chr2B 88.140 1172 112 17 2769 3922 5945402 5946564 0.000000e+00 1369.0
15 TraesCS2D01G013500 chr2B 85.939 1017 102 17 2770 3765 5897055 5898051 0.000000e+00 1048.0
16 TraesCS2D01G013500 chr2B 87.589 846 73 18 5633 6456 3308694 3307859 0.000000e+00 952.0
17 TraesCS2D01G013500 chr2B 87.551 731 62 13 2770 3493 5856114 5856822 0.000000e+00 819.0
18 TraesCS2D01G013500 chr2B 86.382 727 73 9 2772 3493 5915782 5916487 0.000000e+00 771.0
19 TraesCS2D01G013500 chr2B 84.164 682 77 17 5747 6421 5952713 5953370 3.840000e-177 632.0
20 TraesCS2D01G013500 chr2B 93.990 416 24 1 4078 4492 3309108 3308693 4.970000e-176 628.0
21 TraesCS2D01G013500 chr2B 84.640 625 74 11 5748 6365 5908213 5908822 3.010000e-168 603.0
22 TraesCS2D01G013500 chr2B 83.309 677 78 23 5753 6421 5916493 5917142 6.520000e-165 592.0
23 TraesCS2D01G013500 chr2B 85.880 517 58 10 5748 6257 5856823 5857331 3.100000e-148 536.0
24 TraesCS2D01G013500 chr2B 86.321 424 54 3 4072 4492 5951691 5952113 6.900000e-125 459.0
25 TraesCS2D01G013500 chr2B 86.256 422 35 10 3076 3493 5907810 5908212 3.230000e-118 436.0
26 TraesCS2D01G013500 chr2B 87.263 369 33 3 6506 6868 3307766 3307406 7.040000e-110 409.0
27 TraesCS2D01G013500 chr2B 89.706 272 22 4 2770 3039 5907546 5907813 7.250000e-90 342.0
28 TraesCS2D01G013500 chr2B 83.871 310 25 19 7254 7541 3306836 3306530 9.640000e-69 272.0
29 TraesCS2D01G013500 chr2B 89.623 212 18 2 3763 3970 5899762 5899973 4.490000e-67 267.0
30 TraesCS2D01G013500 chr2B 86.842 114 11 4 5633 5745 5952112 5952222 2.860000e-24 124.0
31 TraesCS2D01G013500 chr2A 92.615 1503 52 17 141 1592 4963412 4964906 0.000000e+00 2106.0
32 TraesCS2D01G013500 chr2A 93.778 1350 63 12 5633 6972 4968199 4969537 0.000000e+00 2008.0
33 TraesCS2D01G013500 chr2A 97.118 1145 27 2 2769 3907 4966369 4967513 0.000000e+00 1927.0
34 TraesCS2D01G013500 chr2A 94.118 1105 57 7 1670 2770 4965231 4966331 0.000000e+00 1674.0
35 TraesCS2D01G013500 chr2A 93.664 584 18 5 3910 4492 4967635 4968200 0.000000e+00 856.0
36 TraesCS2D01G013500 chr2A 85.071 422 19 19 7155 7541 4970332 4970744 2.550000e-104 390.0
37 TraesCS2D01G013500 chr2A 92.222 90 4 2 6884 6971 593655997 593655909 2.860000e-24 124.0
38 TraesCS2D01G013500 chr2A 96.296 54 2 0 5586 5639 61487285 61487232 1.040000e-13 89.8
39 TraesCS2D01G013500 chr5D 98.002 1051 19 2 4539 5587 46297877 46296827 0.000000e+00 1823.0
40 TraesCS2D01G013500 chr5D 97.911 1053 17 4 4539 5587 299515969 299514918 0.000000e+00 1818.0
41 TraesCS2D01G013500 chr5D 85.011 874 120 11 1670 2536 544496508 544495639 0.000000e+00 878.0
42 TraesCS2D01G013500 chr5D 87.805 82 8 2 6892 6971 107472970 107472889 2.240000e-15 95.3
43 TraesCS2D01G013500 chr5D 94.545 55 3 0 4485 4539 539458855 539458801 1.350000e-12 86.1
44 TraesCS2D01G013500 chr5D 96.000 50 2 0 4490 4539 507553714 507553665 1.740000e-11 82.4
45 TraesCS2D01G013500 chr5D 86.441 59 6 2 6915 6972 432064382 432064439 6.320000e-06 63.9
46 TraesCS2D01G013500 chr4D 98.004 1052 17 4 4539 5587 400177922 400178972 0.000000e+00 1823.0
47 TraesCS2D01G013500 chr4D 85.244 881 105 21 1671 2533 481885480 481886353 0.000000e+00 883.0
48 TraesCS2D01G013500 chr4D 96.364 55 2 0 5588 5642 78369319 78369265 2.900000e-14 91.6
49 TraesCS2D01G013500 chr3D 97.826 1058 19 4 4539 5593 207120474 207121530 0.000000e+00 1823.0
50 TraesCS2D01G013500 chr3D 97.913 1054 19 3 4539 5591 422901952 422900901 0.000000e+00 1821.0
51 TraesCS2D01G013500 chr3D 89.247 93 10 0 6880 6972 428242640 428242732 4.780000e-22 117.0
52 TraesCS2D01G013500 chr3D 84.444 90 13 1 6878 6966 28509316 28509405 3.750000e-13 87.9
53 TraesCS2D01G013500 chr3D 94.643 56 3 0 5588 5643 206968932 206968877 3.750000e-13 87.9
54 TraesCS2D01G013500 chr3D 93.333 60 0 4 5589 5647 27518952 27519008 1.350000e-12 86.1
55 TraesCS2D01G013500 chr1D 97.909 1052 18 4 4539 5587 273875104 273876154 0.000000e+00 1818.0
56 TraesCS2D01G013500 chr1D 97.812 1051 20 3 4539 5587 431783789 431782740 0.000000e+00 1810.0
57 TraesCS2D01G013500 chr1D 85.664 858 112 10 1684 2534 23255048 23254195 0.000000e+00 893.0
58 TraesCS2D01G013500 chr1D 83.097 988 128 27 1581 2533 461376793 461375810 0.000000e+00 863.0
59 TraesCS2D01G013500 chr1D 86.813 91 9 2 6881 6971 77013366 77013453 1.730000e-16 99.0
60 TraesCS2D01G013500 chr1D 88.889 81 8 1 6873 6953 110052459 110052538 1.730000e-16 99.0
61 TraesCS2D01G013500 chr1D 85.915 71 10 0 6890 6960 422058587 422058517 8.110000e-10 76.8
62 TraesCS2D01G013500 chr7D 97.909 1052 16 6 4539 5587 416230681 416229633 0.000000e+00 1816.0
63 TraesCS2D01G013500 chr7D 96.667 60 2 0 7482 7541 39390857 39390798 4.810000e-17 100.0
64 TraesCS2D01G013500 chr7D 96.667 60 2 0 7482 7541 39424941 39424882 4.810000e-17 100.0
65 TraesCS2D01G013500 chr7D 96.667 60 2 0 7482 7541 39466555 39466496 4.810000e-17 100.0
66 TraesCS2D01G013500 chr7D 96.667 60 2 0 7482 7541 108415982 108416041 4.810000e-17 100.0
67 TraesCS2D01G013500 chr7D 86.170 94 8 4 6879 6971 548774686 548774775 6.230000e-16 97.1
68 TraesCS2D01G013500 chr7D 87.671 73 7 1 5586 5658 208540370 208540440 4.850000e-12 84.2
69 TraesCS2D01G013500 chr7D 92.000 50 4 0 7361 7410 39425096 39425047 3.780000e-08 71.3
70 TraesCS2D01G013500 chr7D 92.000 50 4 0 7361 7410 39466710 39466661 3.780000e-08 71.3
71 TraesCS2D01G013500 chr7D 90.000 50 5 0 7361 7410 39391012 39390963 1.760000e-06 65.8
72 TraesCS2D01G013500 chr4A 83.117 1001 137 16 1563 2536 676168000 676167005 0.000000e+00 883.0
73 TraesCS2D01G013500 chr4A 92.683 82 6 0 6890 6971 590111550 590111631 1.330000e-22 119.0
74 TraesCS2D01G013500 chr4A 85.185 54 6 1 5603 5656 41591276 41591225 4.000000e-03 54.7
75 TraesCS2D01G013500 chr6A 81.391 1107 153 26 1474 2537 480612179 480611083 0.000000e+00 854.0
76 TraesCS2D01G013500 chr6A 98.000 50 1 0 4490 4539 598597090 598597139 3.750000e-13 87.9
77 TraesCS2D01G013500 chr6A 89.062 64 6 1 6897 6960 64063689 64063751 2.260000e-10 78.7
78 TraesCS2D01G013500 chr7A 84.296 866 126 9 1670 2528 16614627 16615489 0.000000e+00 837.0
79 TraesCS2D01G013500 chr7A 90.110 91 8 1 6882 6971 398924426 398924516 4.780000e-22 117.0
80 TraesCS2D01G013500 chr7A 92.982 57 2 2 7356 7410 113373285 113373341 1.740000e-11 82.4
81 TraesCS2D01G013500 chr7B 79.560 318 27 23 7242 7540 688750126 688750424 7.720000e-45 193.0
82 TraesCS2D01G013500 chr7B 85.870 92 9 2 6878 6969 25889633 25889546 2.240000e-15 95.3
83 TraesCS2D01G013500 chr7B 87.671 73 7 1 5586 5658 192854212 192854142 4.850000e-12 84.2
84 TraesCS2D01G013500 chr3B 78.981 314 30 22 7245 7540 729777229 729776934 1.670000e-41 182.0
85 TraesCS2D01G013500 chr3B 92.222 90 6 1 6886 6975 126580150 126580062 7.940000e-25 126.0
86 TraesCS2D01G013500 chr3B 90.217 92 8 1 6881 6971 680423291 680423382 1.330000e-22 119.0
87 TraesCS2D01G013500 chr3A 90.426 94 9 0 6883 6976 700747622 700747715 2.860000e-24 124.0
88 TraesCS2D01G013500 chr3A 92.771 83 6 0 6890 6972 203994035 203993953 3.700000e-23 121.0
89 TraesCS2D01G013500 chr1B 90.323 93 5 3 6877 6969 120657837 120657925 1.330000e-22 119.0
90 TraesCS2D01G013500 chr5A 89.412 85 8 1 6886 6970 383880550 383880467 1.030000e-18 106.0
91 TraesCS2D01G013500 chr5B 89.024 82 7 2 6892 6971 116684168 116684087 4.810000e-17 100.0
92 TraesCS2D01G013500 chr4B 88.750 80 9 0 6893 6972 623325146 623325067 1.730000e-16 99.0
93 TraesCS2D01G013500 chr6B 96.429 56 2 0 4484 4539 171141965 171142020 8.060000e-15 93.5
94 TraesCS2D01G013500 chr6B 98.000 50 1 0 4490 4539 715678944 715678895 3.750000e-13 87.9
95 TraesCS2D01G013500 chr6B 87.302 63 6 1 5594 5656 82018096 82018036 3.780000e-08 71.3
96 TraesCS2D01G013500 chr6D 98.000 50 1 0 4490 4539 469536404 469536355 3.750000e-13 87.9
97 TraesCS2D01G013500 chr6D 96.000 50 2 0 4488 4537 419760169 419760120 1.740000e-11 82.4
98 TraesCS2D01G013500 chr6D 96.000 50 2 0 4488 4537 419760255 419760206 1.740000e-11 82.4
99 TraesCS2D01G013500 chr1A 91.803 61 4 1 5586 5645 464800368 464800308 4.850000e-12 84.2


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2D01G013500 chr2D 6657877 6665417 7540 False 13926.000000 13926 100.000000 1 7541 1 chr2D.!!$F2 7540
1 TraesCS2D01G013500 chr2D 356047247 356048297 1050 True 1823.000000 1823 98.004000 4539 5587 1 chr2D.!!$R2 1048
2 TraesCS2D01G013500 chr2D 5539808 5541057 1249 True 720.000000 837 87.374000 2772 6299 2 chr2D.!!$R6 3527
3 TraesCS2D01G013500 chr2D 5517516 5518886 1370 True 674.500000 785 84.431000 2770 6421 2 chr2D.!!$R5 3651
4 TraesCS2D01G013500 chr2B 5945402 5946564 1162 False 1369.000000 1369 88.140000 2769 3922 1 chr2B.!!$F1 1153
5 TraesCS2D01G013500 chr2B 3306530 3313723 7193 True 1192.666667 3155 88.499000 4 7541 6 chr2B.!!$R1 7537
6 TraesCS2D01G013500 chr2B 5915782 5917142 1360 False 681.500000 771 84.845500 2772 6421 2 chr2B.!!$F5 3649
7 TraesCS2D01G013500 chr2B 5856114 5857331 1217 False 677.500000 819 86.715500 2770 6257 2 chr2B.!!$F2 3487
8 TraesCS2D01G013500 chr2B 5897055 5899973 2918 False 657.500000 1048 87.781000 2770 3970 2 chr2B.!!$F3 1200
9 TraesCS2D01G013500 chr2B 5907546 5908822 1276 False 460.333333 603 86.867333 2770 6365 3 chr2B.!!$F4 3595
10 TraesCS2D01G013500 chr2B 5951691 5953370 1679 False 405.000000 632 85.775667 4072 6421 3 chr2B.!!$F6 2349
11 TraesCS2D01G013500 chr2A 4963412 4970744 7332 False 1493.500000 2106 92.727333 141 7541 6 chr2A.!!$F1 7400
12 TraesCS2D01G013500 chr5D 46296827 46297877 1050 True 1823.000000 1823 98.002000 4539 5587 1 chr5D.!!$R1 1048
13 TraesCS2D01G013500 chr5D 299514918 299515969 1051 True 1818.000000 1818 97.911000 4539 5587 1 chr5D.!!$R3 1048
14 TraesCS2D01G013500 chr5D 544495639 544496508 869 True 878.000000 878 85.011000 1670 2536 1 chr5D.!!$R6 866
15 TraesCS2D01G013500 chr4D 400177922 400178972 1050 False 1823.000000 1823 98.004000 4539 5587 1 chr4D.!!$F1 1048
16 TraesCS2D01G013500 chr4D 481885480 481886353 873 False 883.000000 883 85.244000 1671 2533 1 chr4D.!!$F2 862
17 TraesCS2D01G013500 chr3D 207120474 207121530 1056 False 1823.000000 1823 97.826000 4539 5593 1 chr3D.!!$F3 1054
18 TraesCS2D01G013500 chr3D 422900901 422901952 1051 True 1821.000000 1821 97.913000 4539 5591 1 chr3D.!!$R2 1052
19 TraesCS2D01G013500 chr1D 273875104 273876154 1050 False 1818.000000 1818 97.909000 4539 5587 1 chr1D.!!$F3 1048
20 TraesCS2D01G013500 chr1D 431782740 431783789 1049 True 1810.000000 1810 97.812000 4539 5587 1 chr1D.!!$R3 1048
21 TraesCS2D01G013500 chr1D 23254195 23255048 853 True 893.000000 893 85.664000 1684 2534 1 chr1D.!!$R1 850
22 TraesCS2D01G013500 chr1D 461375810 461376793 983 True 863.000000 863 83.097000 1581 2533 1 chr1D.!!$R4 952
23 TraesCS2D01G013500 chr7D 416229633 416230681 1048 True 1816.000000 1816 97.909000 4539 5587 1 chr7D.!!$R1 1048
24 TraesCS2D01G013500 chr4A 676167005 676168000 995 True 883.000000 883 83.117000 1563 2536 1 chr4A.!!$R2 973
25 TraesCS2D01G013500 chr6A 480611083 480612179 1096 True 854.000000 854 81.391000 1474 2537 1 chr6A.!!$R1 1063
26 TraesCS2D01G013500 chr7A 16614627 16615489 862 False 837.000000 837 84.296000 1670 2528 1 chr7A.!!$F1 858

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
981 996 0.395311 ATAGCGTTCCTCCGTCTCCA 60.395 55.000 0.00 0.0 0.00 3.86 F
1335 1372 0.179197 TCGCTCTCGTGCTTAGTTCG 60.179 55.000 0.00 0.0 36.96 3.95 F
1432 1470 0.413037 TCAATCCAAACATGGCCCCT 59.587 50.000 0.00 0.0 0.00 4.79 F
1434 1472 1.065998 CAATCCAAACATGGCCCCTTG 60.066 52.381 0.00 0.0 0.00 3.61 F
3127 3507 0.396435 AACCCGAGTCTGCAATGTGA 59.604 50.000 0.00 0.0 0.00 3.58 F
4255 7015 1.456296 TGTGCATGCAGGATGAGAAC 58.544 50.000 23.41 6.4 39.69 3.01 F
5082 7845 0.039180 AATCGGTGGGGAAGGGAAAC 59.961 55.000 0.00 0.0 0.00 2.78 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2402 2731 0.589223 GAAACAAATGCCGACACCGA 59.411 50.000 0.00 0.0 38.22 4.69 R
3061 3441 2.673368 GTGAAAGTGCAGGGTAGATTCG 59.327 50.000 0.00 0.0 0.00 3.34 R
3127 3507 4.281688 AGTGCATACCTGAAAAAGTGCAAT 59.718 37.500 0.00 0.0 43.25 3.56 R
3550 3940 8.367943 TCATTGACAAAATGATCCAAAAACTG 57.632 30.769 0.00 0.0 32.21 3.16 R
4771 7534 0.460311 GTGACGTCCGGGATCTCATT 59.540 55.000 14.12 0.0 0.00 2.57 R
5322 8087 0.332632 CTTGATCCAGCAAGGGGGAA 59.667 55.000 0.00 0.0 41.15 3.97 R
7141 11055 0.174617 CTGGAGAGTTCTCGGAAGGC 59.825 60.000 3.24 0.0 43.76 4.35 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
26 27 9.675464 TTGTGGTCGTTCTTCCTAATATAAATT 57.325 29.630 0.00 0.00 0.00 1.82
27 28 9.321562 TGTGGTCGTTCTTCCTAATATAAATTC 57.678 33.333 0.00 0.00 0.00 2.17
28 29 9.321562 GTGGTCGTTCTTCCTAATATAAATTCA 57.678 33.333 0.00 0.00 0.00 2.57
61 62 2.896039 CCCCCTGAAATTGTTGGGTTA 58.104 47.619 8.50 0.00 38.03 2.85
107 108 1.625818 AGAGCTAAGGTCCCACAACTG 59.374 52.381 0.00 0.00 0.00 3.16
122 123 6.069905 TCCCACAACTGCTTATGACCTATTTA 60.070 38.462 0.00 0.00 0.00 1.40
130 131 9.331282 ACTGCTTATGACCTATTTATTGAGAAC 57.669 33.333 0.00 0.00 0.00 3.01
252 253 5.072055 TCATTGTGTCTCCATTGAACATGT 58.928 37.500 0.00 0.00 0.00 3.21
274 275 9.185192 CATGTCATAAAAGAAGAAAGTGAAACC 57.815 33.333 0.00 0.00 37.80 3.27
478 482 6.267496 ACTAATTAAAGCACCACATCAACC 57.733 37.500 0.00 0.00 0.00 3.77
484 488 1.915489 AGCACCACATCAACCAGGATA 59.085 47.619 0.00 0.00 0.00 2.59
499 503 5.805728 ACCAGGATACCAAAACTTAGTGAG 58.194 41.667 0.00 0.00 37.17 3.51
542 546 6.128336 CGAAAGCAGAAGATGATCAAAAGACT 60.128 38.462 0.00 0.00 0.00 3.24
543 547 7.063898 CGAAAGCAGAAGATGATCAAAAGACTA 59.936 37.037 0.00 0.00 0.00 2.59
544 548 8.804912 AAAGCAGAAGATGATCAAAAGACTAT 57.195 30.769 0.00 0.00 0.00 2.12
545 549 9.896645 AAAGCAGAAGATGATCAAAAGACTATA 57.103 29.630 0.00 0.00 0.00 1.31
577 581 6.370453 ACAAGGCCCTAAGTTCTAAAGAAAA 58.630 36.000 0.00 0.00 35.58 2.29
644 649 8.147704 AGAAAAACCGATCCACATGTTTTAAAT 58.852 29.630 0.00 0.00 39.31 1.40
717 722 4.933505 TTGCAAATTGTCATGGTCTCAA 57.066 36.364 0.00 0.00 0.00 3.02
857 862 1.000827 CCAGCACCGCAAATTACACAA 60.001 47.619 0.00 0.00 0.00 3.33
973 978 6.312918 TGTCATAGAAAAACATAGCGTTCCTC 59.687 38.462 0.00 0.00 36.59 3.71
981 996 0.395311 ATAGCGTTCCTCCGTCTCCA 60.395 55.000 0.00 0.00 0.00 3.86
1093 1108 4.191544 GGACCAAAAGATGACATCGATGA 58.808 43.478 31.33 10.96 0.00 2.92
1305 1342 4.217983 GGCCCAATTTTGATTGAATGCAAA 59.782 37.500 0.00 0.00 37.59 3.68
1306 1343 5.278858 GGCCCAATTTTGATTGAATGCAAAA 60.279 36.000 13.67 13.67 44.92 2.44
1307 1344 6.214399 GCCCAATTTTGATTGAATGCAAAAA 58.786 32.000 14.64 0.00 44.28 1.94
1335 1372 0.179197 TCGCTCTCGTGCTTAGTTCG 60.179 55.000 0.00 0.00 36.96 3.95
1374 1411 3.197983 ACATGGCCTTAGACCTTAGTGAC 59.802 47.826 3.32 0.00 0.00 3.67
1377 1414 2.416972 GGCCTTAGACCTTAGTGACGTG 60.417 54.545 0.00 0.00 0.00 4.49
1378 1415 2.230750 GCCTTAGACCTTAGTGACGTGT 59.769 50.000 0.00 0.00 0.00 4.49
1379 1416 3.672781 GCCTTAGACCTTAGTGACGTGTC 60.673 52.174 0.00 0.00 0.00 3.67
1381 1418 4.379603 CCTTAGACCTTAGTGACGTGTCTG 60.380 50.000 11.48 0.00 36.95 3.51
1383 1420 1.612463 GACCTTAGTGACGTGTCTGGT 59.388 52.381 0.00 0.00 0.00 4.00
1384 1421 1.612463 ACCTTAGTGACGTGTCTGGTC 59.388 52.381 0.00 0.00 34.99 4.02
1431 1469 0.826062 CTCAATCCAAACATGGCCCC 59.174 55.000 0.00 0.00 0.00 5.80
1432 1470 0.413037 TCAATCCAAACATGGCCCCT 59.587 50.000 0.00 0.00 0.00 4.79
1433 1471 1.203288 TCAATCCAAACATGGCCCCTT 60.203 47.619 0.00 0.00 0.00 3.95
1434 1472 1.065998 CAATCCAAACATGGCCCCTTG 60.066 52.381 0.00 0.00 0.00 3.61
1435 1473 1.266867 ATCCAAACATGGCCCCTTGC 61.267 55.000 0.00 0.00 40.16 4.01
1489 1537 3.647771 GCCTCCCTCCCCGTTGTT 61.648 66.667 0.00 0.00 0.00 2.83
1583 1642 4.530857 GCACGCGTAGGAGGGCAT 62.531 66.667 13.44 0.00 42.53 4.40
1790 2113 3.569210 CCTGGTGGTGGTGAGGCA 61.569 66.667 0.00 0.00 0.00 4.75
1797 2120 4.980805 GTGGTGAGGCAACGGCGA 62.981 66.667 16.62 0.00 46.39 5.54
2318 2647 4.098914 TCTTGAAGGTGTTGCTTGGTAT 57.901 40.909 0.00 0.00 0.00 2.73
2402 2731 5.467063 GGTCTTCTTTTCTTCGTTGATCTGT 59.533 40.000 0.00 0.00 0.00 3.41
2551 2886 4.952460 TCGTAAATAGTTGCCAGGGATAC 58.048 43.478 0.00 0.00 0.00 2.24
3055 3435 5.123979 GGCTACTTGAAACATAAACAGGAGG 59.876 44.000 0.00 0.00 0.00 4.30
3061 3441 6.877611 TGAAACATAAACAGGAGGTTCTTC 57.122 37.500 0.00 0.00 39.29 2.87
3127 3507 0.396435 AACCCGAGTCTGCAATGTGA 59.604 50.000 0.00 0.00 0.00 3.58
3584 3974 9.815936 GGATCATTTTGTCAATGATTTGTTTTC 57.184 29.630 10.61 0.00 44.74 2.29
3612 4010 9.277783 GTATTTCAGCTGATATTCCATTGTACT 57.722 33.333 22.30 0.19 0.00 2.73
3628 4026 4.359434 TGTACTTGTACCCATTCTTGCA 57.641 40.909 8.25 0.00 0.00 4.08
3632 4030 5.179452 ACTTGTACCCATTCTTGCATACT 57.821 39.130 0.00 0.00 0.00 2.12
4020 6255 7.012704 GCAGTGAACACATTATATCACCTTCAT 59.987 37.037 7.68 0.00 42.39 2.57
4021 6256 8.554528 CAGTGAACACATTATATCACCTTCATC 58.445 37.037 7.68 0.00 42.39 2.92
4022 6257 8.267183 AGTGAACACATTATATCACCTTCATCA 58.733 33.333 7.68 0.00 42.39 3.07
4023 6258 8.892723 GTGAACACATTATATCACCTTCATCAA 58.107 33.333 0.00 0.00 36.94 2.57
4024 6259 8.892723 TGAACACATTATATCACCTTCATCAAC 58.107 33.333 0.00 0.00 0.00 3.18
4255 7015 1.456296 TGTGCATGCAGGATGAGAAC 58.544 50.000 23.41 6.40 39.69 3.01
4274 7034 5.960113 AGAACACTGAAGCTACTGAGTATG 58.040 41.667 0.00 0.00 0.00 2.39
4425 7187 6.612049 ACGATTTATTAGGAAGACTTCTCCCT 59.388 38.462 14.72 7.11 0.00 4.20
4430 7192 3.453059 AGGAAGACTTCTCCCTCGTTA 57.547 47.619 14.72 0.00 0.00 3.18
4441 7203 1.607612 CCTCGTTATTGCCCCCACT 59.392 57.895 0.00 0.00 0.00 4.00
4483 7245 5.818857 GGATACAATGGCAATTGAAAAGCAT 59.181 36.000 20.90 0.00 45.17 3.79
4492 7254 8.027440 TGGCAATTGAAAAGCATGTTTAATAC 57.973 30.769 10.34 0.00 0.00 1.89
4493 7255 7.877097 TGGCAATTGAAAAGCATGTTTAATACT 59.123 29.630 10.34 0.00 0.00 2.12
4494 7256 8.382875 GGCAATTGAAAAGCATGTTTAATACTC 58.617 33.333 10.34 0.00 0.00 2.59
4495 7257 8.382875 GCAATTGAAAAGCATGTTTAATACTCC 58.617 33.333 10.34 0.00 0.00 3.85
4496 7258 8.872845 CAATTGAAAAGCATGTTTAATACTCCC 58.127 33.333 0.00 0.00 0.00 4.30
4497 7259 7.775053 TTGAAAAGCATGTTTAATACTCCCT 57.225 32.000 0.00 0.00 0.00 4.20
4498 7260 7.391148 TGAAAAGCATGTTTAATACTCCCTC 57.609 36.000 0.00 0.00 0.00 4.30
4499 7261 7.175104 TGAAAAGCATGTTTAATACTCCCTCT 58.825 34.615 0.00 0.00 0.00 3.69
4500 7262 7.121168 TGAAAAGCATGTTTAATACTCCCTCTG 59.879 37.037 0.00 0.00 0.00 3.35
4501 7263 5.700402 AGCATGTTTAATACTCCCTCTGT 57.300 39.130 0.00 0.00 0.00 3.41
4502 7264 5.675538 AGCATGTTTAATACTCCCTCTGTC 58.324 41.667 0.00 0.00 0.00 3.51
4503 7265 4.816925 GCATGTTTAATACTCCCTCTGTCC 59.183 45.833 0.00 0.00 0.00 4.02
4504 7266 5.368989 CATGTTTAATACTCCCTCTGTCCC 58.631 45.833 0.00 0.00 0.00 4.46
4505 7267 4.431378 TGTTTAATACTCCCTCTGTCCCA 58.569 43.478 0.00 0.00 0.00 4.37
4506 7268 4.847512 TGTTTAATACTCCCTCTGTCCCAA 59.152 41.667 0.00 0.00 0.00 4.12
4507 7269 5.311121 TGTTTAATACTCCCTCTGTCCCAAA 59.689 40.000 0.00 0.00 0.00 3.28
4508 7270 6.183361 TGTTTAATACTCCCTCTGTCCCAAAA 60.183 38.462 0.00 0.00 0.00 2.44
4509 7271 6.652205 TTAATACTCCCTCTGTCCCAAAAT 57.348 37.500 0.00 0.00 0.00 1.82
4510 7272 7.758820 TTAATACTCCCTCTGTCCCAAAATA 57.241 36.000 0.00 0.00 0.00 1.40
4511 7273 6.652205 AATACTCCCTCTGTCCCAAAATAA 57.348 37.500 0.00 0.00 0.00 1.40
4512 7274 4.576330 ACTCCCTCTGTCCCAAAATAAG 57.424 45.455 0.00 0.00 0.00 1.73
4513 7275 3.916989 ACTCCCTCTGTCCCAAAATAAGT 59.083 43.478 0.00 0.00 0.00 2.24
4514 7276 4.263506 ACTCCCTCTGTCCCAAAATAAGTG 60.264 45.833 0.00 0.00 0.00 3.16
4515 7277 3.913799 TCCCTCTGTCCCAAAATAAGTGA 59.086 43.478 0.00 0.00 0.00 3.41
4516 7278 4.010349 CCCTCTGTCCCAAAATAAGTGAC 58.990 47.826 0.00 0.00 0.00 3.67
4517 7279 4.263506 CCCTCTGTCCCAAAATAAGTGACT 60.264 45.833 0.00 0.00 0.00 3.41
4518 7280 4.938226 CCTCTGTCCCAAAATAAGTGACTC 59.062 45.833 0.00 0.00 0.00 3.36
4519 7281 4.566004 TCTGTCCCAAAATAAGTGACTCG 58.434 43.478 0.00 0.00 0.00 4.18
4520 7282 4.282449 TCTGTCCCAAAATAAGTGACTCGA 59.718 41.667 0.00 0.00 0.00 4.04
4521 7283 4.566004 TGTCCCAAAATAAGTGACTCGAG 58.434 43.478 11.84 11.84 0.00 4.04
4522 7284 4.039973 TGTCCCAAAATAAGTGACTCGAGT 59.960 41.667 20.18 20.18 0.00 4.18
4523 7285 4.995487 GTCCCAAAATAAGTGACTCGAGTT 59.005 41.667 21.08 6.08 0.00 3.01
4524 7286 5.469084 GTCCCAAAATAAGTGACTCGAGTTT 59.531 40.000 21.08 12.75 0.00 2.66
4525 7287 5.468746 TCCCAAAATAAGTGACTCGAGTTTG 59.531 40.000 21.08 16.23 0.00 2.93
4526 7288 5.238650 CCCAAAATAAGTGACTCGAGTTTGT 59.761 40.000 21.08 5.70 0.00 2.83
4527 7289 6.425721 CCCAAAATAAGTGACTCGAGTTTGTA 59.574 38.462 21.08 10.21 0.00 2.41
4528 7290 7.288672 CCAAAATAAGTGACTCGAGTTTGTAC 58.711 38.462 21.08 15.71 0.00 2.90
4529 7291 7.170998 CCAAAATAAGTGACTCGAGTTTGTACT 59.829 37.037 21.08 17.56 37.31 2.73
4530 7292 9.188588 CAAAATAAGTGACTCGAGTTTGTACTA 57.811 33.333 21.08 7.42 33.84 1.82
4531 7293 9.754382 AAAATAAGTGACTCGAGTTTGTACTAA 57.246 29.630 21.08 1.57 33.84 2.24
4532 7294 8.739649 AATAAGTGACTCGAGTTTGTACTAAC 57.260 34.615 21.08 11.62 33.84 2.34
4533 7295 6.388435 AAGTGACTCGAGTTTGTACTAACT 57.612 37.500 21.08 20.40 40.92 2.24
4534 7296 6.388435 AGTGACTCGAGTTTGTACTAACTT 57.612 37.500 21.08 7.79 38.43 2.66
4535 7297 6.803642 AGTGACTCGAGTTTGTACTAACTTT 58.196 36.000 21.08 8.61 38.43 2.66
4536 7298 7.934457 AGTGACTCGAGTTTGTACTAACTTTA 58.066 34.615 21.08 12.61 38.43 1.85
4537 7299 8.074972 AGTGACTCGAGTTTGTACTAACTTTAG 58.925 37.037 21.08 20.77 38.43 1.85
4771 7534 2.567985 GAAAGTTGTTTGGAGTCCCGA 58.432 47.619 6.74 0.00 34.29 5.14
5007 7770 2.239907 ACCAAGATCCCACCTTAGAAGC 59.760 50.000 0.00 0.00 0.00 3.86
5082 7845 0.039180 AATCGGTGGGGAAGGGAAAC 59.961 55.000 0.00 0.00 0.00 2.78
5188 7951 4.479993 GAGGCGCATGGGAGCAGT 62.480 66.667 14.90 0.00 42.14 4.40
5322 8087 2.022625 TGGATCTCCATCAACCTCTCCT 60.023 50.000 0.00 0.00 42.01 3.69
5525 8290 4.223032 TCTTTTCCCTCTCGTTGCTAGAAT 59.777 41.667 0.00 0.00 0.00 2.40
5555 8320 4.323417 AGATTGTTCTTGGTGATGCGTAA 58.677 39.130 0.00 0.00 0.00 3.18
5556 8321 4.943705 AGATTGTTCTTGGTGATGCGTAAT 59.056 37.500 0.00 0.00 0.00 1.89
5587 8353 2.839486 TTCTGCAACGATCTCCAACT 57.161 45.000 0.00 0.00 0.00 3.16
5591 8357 4.245660 TCTGCAACGATCTCCAACTAAAG 58.754 43.478 0.00 0.00 0.00 1.85
5592 8358 3.997021 CTGCAACGATCTCCAACTAAAGT 59.003 43.478 0.00 0.00 0.00 2.66
5594 8360 5.543714 TGCAACGATCTCCAACTAAAGTTA 58.456 37.500 0.00 0.00 36.32 2.24
5595 8361 5.637810 TGCAACGATCTCCAACTAAAGTTAG 59.362 40.000 0.00 0.00 36.32 2.34
5596 8362 5.638234 GCAACGATCTCCAACTAAAGTTAGT 59.362 40.000 0.00 0.00 45.43 2.24
5597 8363 6.810182 GCAACGATCTCCAACTAAAGTTAGTA 59.190 38.462 4.20 0.00 42.86 1.82
5598 8364 7.201418 GCAACGATCTCCAACTAAAGTTAGTAC 60.201 40.741 4.20 0.00 42.86 2.73
5599 8365 7.458409 ACGATCTCCAACTAAAGTTAGTACA 57.542 36.000 4.20 0.00 42.86 2.90
5600 8366 7.889469 ACGATCTCCAACTAAAGTTAGTACAA 58.111 34.615 4.20 0.00 42.86 2.41
5601 8367 8.362639 ACGATCTCCAACTAAAGTTAGTACAAA 58.637 33.333 4.20 0.00 42.86 2.83
5602 8368 8.645487 CGATCTCCAACTAAAGTTAGTACAAAC 58.355 37.037 4.20 0.00 42.86 2.93
5603 8369 9.708092 GATCTCCAACTAAAGTTAGTACAAACT 57.292 33.333 4.20 0.00 42.86 2.66
5604 8370 9.708092 ATCTCCAACTAAAGTTAGTACAAACTC 57.292 33.333 4.20 0.00 42.86 3.01
5605 8371 7.864379 TCTCCAACTAAAGTTAGTACAAACTCG 59.136 37.037 4.20 0.00 42.86 4.18
5606 8372 7.715657 TCCAACTAAAGTTAGTACAAACTCGA 58.284 34.615 4.20 0.00 42.86 4.04
5607 8373 7.864379 TCCAACTAAAGTTAGTACAAACTCGAG 59.136 37.037 11.84 11.84 42.86 4.04
5608 8374 7.650903 CCAACTAAAGTTAGTACAAACTCGAGT 59.349 37.037 13.58 13.58 42.86 4.18
5609 8375 8.689069 CAACTAAAGTTAGTACAAACTCGAGTC 58.311 37.037 20.33 5.76 42.86 3.36
5610 8376 7.934457 ACTAAAGTTAGTACAAACTCGAGTCA 58.066 34.615 20.33 1.60 41.92 3.41
5611 8377 7.859875 ACTAAAGTTAGTACAAACTCGAGTCAC 59.140 37.037 20.33 14.01 41.92 3.67
5612 8378 6.388435 AAGTTAGTACAAACTCGAGTCACT 57.612 37.500 20.33 19.79 38.76 3.41
5613 8379 6.388435 AGTTAGTACAAACTCGAGTCACTT 57.612 37.500 20.33 6.87 34.60 3.16
5614 8380 7.502120 AGTTAGTACAAACTCGAGTCACTTA 57.498 36.000 20.33 10.67 34.60 2.24
5615 8381 8.108551 AGTTAGTACAAACTCGAGTCACTTAT 57.891 34.615 20.33 1.04 34.60 1.73
5616 8382 8.574737 AGTTAGTACAAACTCGAGTCACTTATT 58.425 33.333 20.33 5.22 34.60 1.40
5617 8383 9.189723 GTTAGTACAAACTCGAGTCACTTATTT 57.810 33.333 20.33 4.41 37.15 1.40
5618 8384 9.754382 TTAGTACAAACTCGAGTCACTTATTTT 57.246 29.630 20.33 3.59 37.15 1.82
5619 8385 8.073355 AGTACAAACTCGAGTCACTTATTTTG 57.927 34.615 20.33 18.12 0.00 2.44
5620 8386 6.300354 ACAAACTCGAGTCACTTATTTTGG 57.700 37.500 20.33 0.00 0.00 3.28
5621 8387 5.238650 ACAAACTCGAGTCACTTATTTTGGG 59.761 40.000 20.33 0.00 0.00 4.12
5622 8388 4.884668 ACTCGAGTCACTTATTTTGGGA 57.115 40.909 13.58 0.00 0.00 4.37
5623 8389 4.566987 ACTCGAGTCACTTATTTTGGGAC 58.433 43.478 13.58 0.00 0.00 4.46
5624 8390 3.581755 TCGAGTCACTTATTTTGGGACG 58.418 45.455 0.00 0.00 33.84 4.79
5625 8391 2.671396 CGAGTCACTTATTTTGGGACGG 59.329 50.000 0.00 0.00 33.84 4.79
5626 8392 3.615592 CGAGTCACTTATTTTGGGACGGA 60.616 47.826 0.00 0.00 33.84 4.69
5627 8393 3.933332 GAGTCACTTATTTTGGGACGGAG 59.067 47.826 0.00 0.00 33.84 4.63
5628 8394 3.007635 GTCACTTATTTTGGGACGGAGG 58.992 50.000 0.00 0.00 0.00 4.30
5629 8395 2.026636 TCACTTATTTTGGGACGGAGGG 60.027 50.000 0.00 0.00 0.00 4.30
5630 8396 2.026636 CACTTATTTTGGGACGGAGGGA 60.027 50.000 0.00 0.00 0.00 4.20
5631 8397 2.238898 ACTTATTTTGGGACGGAGGGAG 59.761 50.000 0.00 0.00 0.00 4.30
5632 8398 1.961133 TATTTTGGGACGGAGGGAGT 58.039 50.000 0.00 0.00 0.00 3.85
5633 8399 1.961133 ATTTTGGGACGGAGGGAGTA 58.039 50.000 0.00 0.00 0.00 2.59
5637 8403 2.077687 TGGGACGGAGGGAGTATAAC 57.922 55.000 0.00 0.00 0.00 1.89
5645 8411 4.120589 CGGAGGGAGTATAACTTTGAAGC 58.879 47.826 0.00 0.00 0.00 3.86
5686 8452 8.551205 ACTGATTTACAAGCATATATGAACACG 58.449 33.333 17.10 2.25 0.00 4.49
5699 8465 9.433317 CATATATGAACACGTTTTGTCCAATAC 57.567 33.333 6.92 0.00 37.51 1.89
5709 8475 5.746245 CGTTTTGTCCAATACAGCTTTGAAA 59.254 36.000 0.00 0.00 39.87 2.69
5714 8480 7.759489 TGTCCAATACAGCTTTGAAACTTAT 57.241 32.000 0.00 0.00 33.01 1.73
5715 8481 8.856153 TGTCCAATACAGCTTTGAAACTTATA 57.144 30.769 0.00 0.00 33.01 0.98
5942 9209 6.611381 CATAACGAATGGACACTCATTTTGT 58.389 36.000 0.00 0.00 37.47 2.83
6011 9278 6.644347 TCATTCTCCTAAAGGTTCTGCTAAG 58.356 40.000 0.00 0.00 36.34 2.18
6025 9293 2.548057 CTGCTAAGCGAAGTTGGTTTGA 59.452 45.455 0.00 0.00 0.00 2.69
6245 9526 5.181690 TCAAGTAGTGCCAATGTTGTTTC 57.818 39.130 0.00 0.00 0.00 2.78
6415 9699 6.146347 GTCCACTGAAGTAGATGTCAAAAGAC 59.854 42.308 0.00 0.00 0.00 3.01
6542 9869 0.881118 AACACCATCGTGCCATGAAC 59.119 50.000 0.00 0.00 44.40 3.18
6668 9995 5.932027 AAATTATAGGGGAAGGAGGAAGG 57.068 43.478 0.00 0.00 0.00 3.46
6695 10022 7.364585 CCCTATACATGATGATCCTTCTCTTCC 60.365 44.444 0.00 0.00 0.00 3.46
6766 10099 2.489985 CCATGTTGGGGAGGTTGTTGTA 60.490 50.000 0.00 0.00 32.67 2.41
6767 10100 3.430453 CATGTTGGGGAGGTTGTTGTAT 58.570 45.455 0.00 0.00 0.00 2.29
6768 10101 4.568804 CCATGTTGGGGAGGTTGTTGTATA 60.569 45.833 0.00 0.00 32.67 1.47
6769 10102 4.938575 TGTTGGGGAGGTTGTTGTATAT 57.061 40.909 0.00 0.00 0.00 0.86
6770 10103 6.361433 CATGTTGGGGAGGTTGTTGTATATA 58.639 40.000 0.00 0.00 0.00 0.86
6780 10113 7.927629 GGAGGTTGTTGTATATATTACCGTTGA 59.072 37.037 0.00 0.00 0.00 3.18
6794 10127 4.413495 ACCGTTGAAATTATGGAACGTG 57.587 40.909 0.00 0.00 39.58 4.49
6811 10144 4.389664 ACGTGAATCGAATTGAGTTGTG 57.610 40.909 0.00 0.00 42.86 3.33
6868 10205 6.183360 TGCTGTGCATGCATTATCTGAAATAA 60.183 34.615 25.64 0.00 35.31 1.40
6869 10206 6.866770 GCTGTGCATGCATTATCTGAAATAAT 59.133 34.615 25.64 0.00 0.00 1.28
6870 10207 8.024865 GCTGTGCATGCATTATCTGAAATAATA 58.975 33.333 25.64 0.00 0.00 0.98
6911 10248 7.184067 AGTCCCTCTGTAACTTAATGTAAGG 57.816 40.000 0.47 0.00 40.08 2.69
6972 10309 3.606595 AAAAGTTACCGAGGGAGTAGC 57.393 47.619 0.00 0.00 0.00 3.58
6974 10311 2.528673 AGTTACCGAGGGAGTAGCTT 57.471 50.000 0.00 0.00 28.07 3.74
6975 10312 2.817665 AGTTACCGAGGGAGTAGCTTT 58.182 47.619 0.00 0.00 28.07 3.51
6976 10313 2.496470 AGTTACCGAGGGAGTAGCTTTG 59.504 50.000 0.00 0.00 28.07 2.77
6977 10314 0.822164 TACCGAGGGAGTAGCTTTGC 59.178 55.000 0.00 0.00 0.00 3.68
6978 10315 0.905337 ACCGAGGGAGTAGCTTTGCT 60.905 55.000 0.00 0.00 43.41 3.91
6979 10316 0.250513 CCGAGGGAGTAGCTTTGCTT 59.749 55.000 0.00 0.00 40.44 3.91
6980 10317 1.363744 CGAGGGAGTAGCTTTGCTTG 58.636 55.000 0.00 0.00 40.44 4.01
6981 10318 1.743996 GAGGGAGTAGCTTTGCTTGG 58.256 55.000 0.00 0.00 40.44 3.61
6984 10321 1.279271 GGGAGTAGCTTTGCTTGGAGA 59.721 52.381 0.00 0.00 40.44 3.71
6989 10326 4.853007 AGTAGCTTTGCTTGGAGATTCAT 58.147 39.130 0.00 0.00 40.44 2.57
6991 10328 2.758979 AGCTTTGCTTGGAGATTCATGG 59.241 45.455 0.00 0.00 33.89 3.66
6995 10332 1.358787 TGCTTGGAGATTCATGGGGTT 59.641 47.619 0.00 0.00 0.00 4.11
7008 10345 3.135348 TCATGGGGTTCTAGAAGCAGATG 59.865 47.826 30.11 27.26 40.33 2.90
7009 10346 2.551270 TGGGGTTCTAGAAGCAGATGT 58.449 47.619 30.11 0.00 40.33 3.06
7037 10379 4.760047 CCGTGGCTTCGAGGTGGG 62.760 72.222 0.00 0.00 0.00 4.61
7051 10393 4.278513 TGGGTGGGCCGGTCAAAG 62.279 66.667 9.07 0.00 34.97 2.77
7052 10394 3.961414 GGGTGGGCCGGTCAAAGA 61.961 66.667 9.07 0.00 34.97 2.52
7053 10395 2.355115 GGTGGGCCGGTCAAAGAT 59.645 61.111 9.07 0.00 0.00 2.40
7054 10396 1.749258 GGTGGGCCGGTCAAAGATC 60.749 63.158 9.07 0.00 0.00 2.75
7056 10398 2.227757 TGGGCCGGTCAAAGATCCA 61.228 57.895 9.07 0.00 0.00 3.41
7057 10399 1.749258 GGGCCGGTCAAAGATCCAC 60.749 63.158 9.07 0.00 0.00 4.02
7062 10404 1.749258 GGTCAAAGATCCACCCCGC 60.749 63.158 0.00 0.00 0.00 6.13
7067 10409 4.552365 AGATCCACCCCGCATGCG 62.552 66.667 32.60 32.60 39.44 4.73
7072 10414 3.208383 CACCCCGCATGCGCAATA 61.208 61.111 34.00 0.00 38.40 1.90
7078 10420 0.110509 CCGCATGCGCAATATCAGAC 60.111 55.000 34.00 0.00 38.40 3.51
7084 10426 1.069765 CGCAATATCAGACGGGCCT 59.930 57.895 0.84 0.00 0.00 5.19
7110 11024 1.910580 TTTCGCTAGAGGGCCCCAAG 61.911 60.000 21.43 14.96 0.00 3.61
7130 11044 2.125673 CCGTGGGGAAGTGCGTAG 60.126 66.667 0.00 0.00 34.06 3.51
7143 11057 0.947180 TGCGTAGAACGAACAAGGCC 60.947 55.000 3.22 0.00 46.05 5.19
7145 11059 1.792006 CGTAGAACGAACAAGGCCTT 58.208 50.000 13.78 13.78 46.05 4.35
7146 11060 1.725164 CGTAGAACGAACAAGGCCTTC 59.275 52.381 17.29 3.47 46.05 3.46
7147 11061 2.074576 GTAGAACGAACAAGGCCTTCC 58.925 52.381 17.29 7.01 0.00 3.46
7148 11062 0.602905 AGAACGAACAAGGCCTTCCG 60.603 55.000 17.29 20.69 37.47 4.30
7149 11063 0.601841 GAACGAACAAGGCCTTCCGA 60.602 55.000 27.88 0.00 37.47 4.55
7150 11064 0.602905 AACGAACAAGGCCTTCCGAG 60.603 55.000 27.88 16.26 37.47 4.63
7151 11065 1.292223 CGAACAAGGCCTTCCGAGA 59.708 57.895 17.29 0.00 37.47 4.04
7152 11066 0.320421 CGAACAAGGCCTTCCGAGAA 60.320 55.000 17.29 0.00 37.47 2.87
7153 11067 1.157585 GAACAAGGCCTTCCGAGAAC 58.842 55.000 17.29 0.00 37.47 3.01
7186 11135 1.810441 CTCGCTTGCTGCCTCTCTG 60.810 63.158 0.00 0.00 38.78 3.35
7236 11197 2.659016 CTCCCGTGAGCAGCTTGA 59.341 61.111 0.00 0.00 0.00 3.02
7358 11487 4.760047 CGGAAGGGGGTCACGCTG 62.760 72.222 0.00 0.00 42.22 5.18
7456 11586 2.534396 CCCCCACTGGTGCCTACAA 61.534 63.158 0.00 0.00 0.00 2.41
7459 11589 0.981183 CCCACTGGTGCCTACAACTA 59.019 55.000 0.00 0.00 33.30 2.24
7481 11611 8.329203 ACTAATTCAGTTCTGAGATTGGTTTC 57.671 34.615 14.20 0.00 31.59 2.78
7498 11642 2.526304 TTCTTCAGGTGTTCTCGGTG 57.474 50.000 0.00 0.00 0.00 4.94
7531 11675 0.533755 GAGGGATCAAGATGGTGCCG 60.534 60.000 0.00 0.00 44.49 5.69
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 9.675464 AATTTATATTAGGAAGAACGACCACAA 57.325 29.630 0.00 0.00 0.00 3.33
2 3 9.321562 TGAATTTATATTAGGAAGAACGACCAC 57.678 33.333 0.00 0.00 0.00 4.16
98 99 2.496899 AGGTCATAAGCAGTTGTGGG 57.503 50.000 0.00 0.00 0.00 4.61
107 108 8.589335 TCGTTCTCAATAAATAGGTCATAAGC 57.411 34.615 0.00 0.00 0.00 3.09
189 190 6.341408 ACCTGTAGATTTATCCCCAAATGT 57.659 37.500 0.00 0.00 0.00 2.71
252 253 7.562454 ACGGTTTCACTTTCTTCTTTTATGA 57.438 32.000 0.00 0.00 0.00 2.15
478 482 5.122396 GTGCTCACTAAGTTTTGGTATCCTG 59.878 44.000 0.00 0.00 0.00 3.86
484 488 4.460263 TCATGTGCTCACTAAGTTTTGGT 58.540 39.130 1.47 0.00 0.00 3.67
499 503 1.739466 TCGCTTTGAGGAATCATGTGC 59.261 47.619 0.00 0.00 0.00 4.57
577 581 2.290323 ACAAGCATCTACGAAGGCCTTT 60.290 45.455 21.54 7.26 0.00 3.11
717 722 7.171508 CGCAGAAGGTGTATGTCATTTATGTAT 59.828 37.037 0.00 0.00 0.00 2.29
787 792 4.220572 GCTTATTGCGGTTTTGTCGTTAA 58.779 39.130 0.00 0.00 0.00 2.01
857 862 9.620660 CAAATTACGTTAGCTTTTGGAACTATT 57.379 29.630 0.00 0.00 0.00 1.73
973 978 2.350057 TCTAGAGGATGTGGAGACGG 57.650 55.000 0.00 0.00 0.00 4.79
981 996 7.408805 AGGGACATAGATAGATCTAGAGGATGT 59.591 40.741 16.35 16.35 42.20 3.06
1059 1074 1.523154 TTTGGTCCACCGATGCTTGC 61.523 55.000 0.00 0.00 39.43 4.01
1307 1344 2.290641 AGCACGAGAGCGAACAATTTTT 59.709 40.909 0.00 0.00 41.64 1.94
1308 1345 1.873591 AGCACGAGAGCGAACAATTTT 59.126 42.857 0.00 0.00 41.64 1.82
1309 1346 1.512926 AGCACGAGAGCGAACAATTT 58.487 45.000 0.00 0.00 41.64 1.82
1310 1347 1.512926 AAGCACGAGAGCGAACAATT 58.487 45.000 0.00 0.00 41.64 2.32
1311 1348 2.263077 CTAAGCACGAGAGCGAACAAT 58.737 47.619 0.00 0.00 41.64 2.71
1312 1349 1.000607 ACTAAGCACGAGAGCGAACAA 60.001 47.619 0.00 0.00 41.64 2.83
1313 1350 0.596577 ACTAAGCACGAGAGCGAACA 59.403 50.000 0.00 0.00 41.64 3.18
1318 1355 1.914700 CTTCGAACTAAGCACGAGAGC 59.085 52.381 0.00 0.00 37.36 4.09
1335 1372 5.863935 GGCCATGTTTGATTGAGTTTACTTC 59.136 40.000 0.00 0.00 0.00 3.01
1374 1411 2.343758 CCCACAGGACCAGACACG 59.656 66.667 0.00 0.00 33.47 4.49
1377 1414 1.286248 ATAACCCCACAGGACCAGAC 58.714 55.000 0.00 0.00 39.89 3.51
1378 1415 2.053747 AATAACCCCACAGGACCAGA 57.946 50.000 0.00 0.00 39.89 3.86
1379 1416 2.899303 AAATAACCCCACAGGACCAG 57.101 50.000 0.00 0.00 39.89 4.00
1381 1418 4.165372 TGATCTAAATAACCCCACAGGACC 59.835 45.833 0.00 0.00 39.89 4.46
1383 1420 6.849697 ACTATGATCTAAATAACCCCACAGGA 59.150 38.462 0.00 0.00 39.89 3.86
1384 1421 7.079451 ACTATGATCTAAATAACCCCACAGG 57.921 40.000 0.00 0.00 43.78 4.00
1470 1518 4.101448 CAACGGGGAGGGAGGCTG 62.101 72.222 0.00 0.00 0.00 4.85
1942 2265 3.672295 GAGCGGCAAGAGGGGACAG 62.672 68.421 1.45 0.00 0.00 3.51
1953 2276 3.454587 AACCACAACTCGAGCGGCA 62.455 57.895 13.61 0.00 0.00 5.69
1958 2281 0.951040 GGGAGCAACCACAACTCGAG 60.951 60.000 11.84 11.84 41.20 4.04
2148 2476 4.720902 TCGGTACCGGACGAGCCA 62.721 66.667 32.80 9.30 40.25 4.75
2185 2513 0.905357 CTTCAGGAAGGTCCGATGGT 59.095 55.000 1.01 0.00 42.75 3.55
2258 2587 2.542824 GCCGTTGTTGCATGTACAAGTT 60.543 45.455 13.53 0.00 36.27 2.66
2318 2647 1.862602 TAGCACTCTGAAGCGTCGCA 61.863 55.000 21.09 0.00 35.48 5.10
2353 2682 3.775654 GGTGCACCCTCCGGAGAG 61.776 72.222 33.39 23.33 40.09 3.20
2402 2731 0.589223 GAAACAAATGCCGACACCGA 59.411 50.000 0.00 0.00 38.22 4.69
2758 3095 7.910162 CCGAATGAGTACCACAATTTAATGAAG 59.090 37.037 0.00 0.00 0.00 3.02
2851 3227 3.753774 GTGGTTTCACACATGCTCG 57.246 52.632 0.00 0.00 43.13 5.03
3055 3435 2.930682 GTGCAGGGTAGATTCGAAGAAC 59.069 50.000 3.35 1.38 45.90 3.01
3061 3441 2.673368 GTGAAAGTGCAGGGTAGATTCG 59.327 50.000 0.00 0.00 0.00 3.34
3127 3507 4.281688 AGTGCATACCTGAAAAAGTGCAAT 59.718 37.500 0.00 0.00 43.25 3.56
3550 3940 8.367943 TCATTGACAAAATGATCCAAAAACTG 57.632 30.769 0.00 0.00 32.21 3.16
3563 3953 7.784633 ACCGAAAACAAATCATTGACAAAAT 57.215 28.000 0.00 0.00 38.94 1.82
3584 3974 6.205464 ACAATGGAATATCAGCTGAAATACCG 59.795 38.462 22.50 11.53 0.00 4.02
3612 4010 4.917385 ACAGTATGCAAGAATGGGTACAA 58.083 39.130 0.00 0.00 42.53 2.41
3628 4026 0.981183 TTGGGCCTTGTCGACAGTAT 59.019 50.000 19.11 0.00 0.00 2.12
3632 4030 2.112297 GGTTGGGCCTTGTCGACA 59.888 61.111 15.76 15.76 0.00 4.35
3708 4106 4.595762 AACTTCCAGCGTTCTAAGTACA 57.404 40.909 0.00 0.00 32.09 2.90
3715 4113 6.635030 AGAAATTTAAACTTCCAGCGTTCT 57.365 33.333 5.80 0.00 0.00 3.01
3800 5912 5.120399 TGCCGAGGTACATAAGTTAATTGG 58.880 41.667 0.00 0.00 0.00 3.16
4232 6992 4.094830 TCTCATCCTGCATGCACATATT 57.905 40.909 18.46 0.00 31.70 1.28
4255 7015 3.862267 GCACATACTCAGTAGCTTCAGTG 59.138 47.826 0.00 0.00 0.00 3.66
4274 7034 3.578688 GAATGGTTTCACATTGGAGCAC 58.421 45.455 0.00 0.00 40.92 4.40
4425 7187 0.834612 CCTAGTGGGGGCAATAACGA 59.165 55.000 0.00 0.00 0.00 3.85
4430 7192 0.853530 GGAATCCTAGTGGGGGCAAT 59.146 55.000 0.00 0.00 35.33 3.56
4483 7245 4.431378 TGGGACAGAGGGAGTATTAAACA 58.569 43.478 0.00 0.00 0.00 2.83
4492 7254 4.019321 TCACTTATTTTGGGACAGAGGGAG 60.019 45.833 0.00 0.00 42.39 4.30
4493 7255 3.913799 TCACTTATTTTGGGACAGAGGGA 59.086 43.478 0.00 0.00 42.39 4.20
4494 7256 4.010349 GTCACTTATTTTGGGACAGAGGG 58.990 47.826 0.00 0.00 42.39 4.30
4495 7257 4.911390 AGTCACTTATTTTGGGACAGAGG 58.089 43.478 0.00 0.00 42.39 3.69
4496 7258 4.627467 CGAGTCACTTATTTTGGGACAGAG 59.373 45.833 0.00 0.00 42.39 3.35
4497 7259 4.282449 TCGAGTCACTTATTTTGGGACAGA 59.718 41.667 0.00 0.00 42.39 3.41
4498 7260 4.566004 TCGAGTCACTTATTTTGGGACAG 58.434 43.478 0.00 0.00 42.39 3.51
4499 7261 4.039973 ACTCGAGTCACTTATTTTGGGACA 59.960 41.667 13.58 0.00 0.00 4.02
4500 7262 4.566987 ACTCGAGTCACTTATTTTGGGAC 58.433 43.478 13.58 0.00 0.00 4.46
4501 7263 4.884668 ACTCGAGTCACTTATTTTGGGA 57.115 40.909 13.58 0.00 0.00 4.37
4502 7264 5.238650 ACAAACTCGAGTCACTTATTTTGGG 59.761 40.000 20.33 0.00 0.00 4.12
4503 7265 6.300354 ACAAACTCGAGTCACTTATTTTGG 57.700 37.500 20.33 0.00 0.00 3.28
4504 7266 8.073355 AGTACAAACTCGAGTCACTTATTTTG 57.927 34.615 20.33 18.12 0.00 2.44
4505 7267 9.754382 TTAGTACAAACTCGAGTCACTTATTTT 57.246 29.630 20.33 3.59 37.15 1.82
4506 7268 9.189723 GTTAGTACAAACTCGAGTCACTTATTT 57.810 33.333 20.33 4.41 37.15 1.40
4507 7269 8.574737 AGTTAGTACAAACTCGAGTCACTTATT 58.425 33.333 20.33 5.22 34.60 1.40
4508 7270 8.108551 AGTTAGTACAAACTCGAGTCACTTAT 57.891 34.615 20.33 1.04 34.60 1.73
4509 7271 7.502120 AGTTAGTACAAACTCGAGTCACTTA 57.498 36.000 20.33 10.67 34.60 2.24
4510 7272 6.388435 AGTTAGTACAAACTCGAGTCACTT 57.612 37.500 20.33 6.87 34.60 3.16
4511 7273 6.388435 AAGTTAGTACAAACTCGAGTCACT 57.612 37.500 20.33 19.79 38.76 3.41
4512 7274 7.859875 ACTAAAGTTAGTACAAACTCGAGTCAC 59.140 37.037 20.33 14.01 41.92 3.67
4513 7275 7.859377 CACTAAAGTTAGTACAAACTCGAGTCA 59.141 37.037 20.33 1.60 41.82 3.41
4514 7276 7.859875 ACACTAAAGTTAGTACAAACTCGAGTC 59.140 37.037 20.33 5.76 41.82 3.36
4515 7277 7.710896 ACACTAAAGTTAGTACAAACTCGAGT 58.289 34.615 13.58 13.58 41.82 4.18
4516 7278 9.837525 ATACACTAAAGTTAGTACAAACTCGAG 57.162 33.333 11.84 11.84 41.82 4.04
4520 7282 9.846248 CCGTATACACTAAAGTTAGTACAAACT 57.154 33.333 3.32 0.00 41.82 2.66
4521 7283 9.076596 CCCGTATACACTAAAGTTAGTACAAAC 57.923 37.037 3.32 1.20 41.82 2.93
4522 7284 9.019656 TCCCGTATACACTAAAGTTAGTACAAA 57.980 33.333 3.32 0.00 41.82 2.83
4523 7285 8.574251 TCCCGTATACACTAAAGTTAGTACAA 57.426 34.615 3.32 0.00 41.82 2.41
4524 7286 8.752005 ATCCCGTATACACTAAAGTTAGTACA 57.248 34.615 3.32 0.00 41.82 2.90
4525 7287 9.455847 CAATCCCGTATACACTAAAGTTAGTAC 57.544 37.037 3.32 0.00 41.82 2.73
4526 7288 9.407380 TCAATCCCGTATACACTAAAGTTAGTA 57.593 33.333 3.32 0.00 41.82 1.82
4527 7289 8.297470 TCAATCCCGTATACACTAAAGTTAGT 57.703 34.615 3.32 0.00 44.42 2.24
4528 7290 9.760077 AATCAATCCCGTATACACTAAAGTTAG 57.240 33.333 3.32 0.00 36.82 2.34
4529 7291 9.537192 CAATCAATCCCGTATACACTAAAGTTA 57.463 33.333 3.32 0.00 0.00 2.24
4530 7292 8.262227 TCAATCAATCCCGTATACACTAAAGTT 58.738 33.333 3.32 0.00 0.00 2.66
4531 7293 7.788026 TCAATCAATCCCGTATACACTAAAGT 58.212 34.615 3.32 0.00 0.00 2.66
4532 7294 8.657074 TTCAATCAATCCCGTATACACTAAAG 57.343 34.615 3.32 0.00 0.00 1.85
4533 7295 9.268268 GATTCAATCAATCCCGTATACACTAAA 57.732 33.333 3.32 0.00 35.66 1.85
4534 7296 8.827177 GATTCAATCAATCCCGTATACACTAA 57.173 34.615 3.32 0.00 35.66 2.24
4761 7524 1.414158 GGATCTCATTCGGGACTCCA 58.586 55.000 0.00 0.00 0.00 3.86
4771 7534 0.460311 GTGACGTCCGGGATCTCATT 59.540 55.000 14.12 0.00 0.00 2.57
5322 8087 0.332632 CTTGATCCAGCAAGGGGGAA 59.667 55.000 0.00 0.00 41.15 3.97
5525 8290 6.867519 TCACCAAGAACAATCTATGGAGTA 57.132 37.500 11.44 0.00 37.33 2.59
5587 8353 7.934457 AGTGACTCGAGTTTGTACTAACTTTA 58.066 34.615 21.08 12.61 38.43 1.85
5591 8357 8.739649 AATAAGTGACTCGAGTTTGTACTAAC 57.260 34.615 21.08 11.62 33.84 2.34
5592 8358 9.754382 AAAATAAGTGACTCGAGTTTGTACTAA 57.246 29.630 21.08 1.57 33.84 2.24
5594 8360 7.170998 CCAAAATAAGTGACTCGAGTTTGTACT 59.829 37.037 21.08 17.56 37.31 2.73
5595 8361 7.288672 CCAAAATAAGTGACTCGAGTTTGTAC 58.711 38.462 21.08 15.71 0.00 2.90
5596 8362 6.425721 CCCAAAATAAGTGACTCGAGTTTGTA 59.574 38.462 21.08 10.21 0.00 2.41
5597 8363 5.238650 CCCAAAATAAGTGACTCGAGTTTGT 59.761 40.000 21.08 5.70 0.00 2.83
5598 8364 5.468746 TCCCAAAATAAGTGACTCGAGTTTG 59.531 40.000 21.08 16.23 0.00 2.93
5599 8365 5.469084 GTCCCAAAATAAGTGACTCGAGTTT 59.531 40.000 21.08 12.75 0.00 2.66
5600 8366 4.995487 GTCCCAAAATAAGTGACTCGAGTT 59.005 41.667 21.08 6.08 0.00 3.01
5601 8367 4.566987 GTCCCAAAATAAGTGACTCGAGT 58.433 43.478 20.18 20.18 0.00 4.18
5602 8368 3.612860 CGTCCCAAAATAAGTGACTCGAG 59.387 47.826 11.84 11.84 0.00 4.04
5603 8369 3.581755 CGTCCCAAAATAAGTGACTCGA 58.418 45.455 0.00 0.00 0.00 4.04
5604 8370 2.671396 CCGTCCCAAAATAAGTGACTCG 59.329 50.000 0.00 0.00 0.00 4.18
5605 8371 3.933332 CTCCGTCCCAAAATAAGTGACTC 59.067 47.826 0.00 0.00 0.00 3.36
5606 8372 3.307480 CCTCCGTCCCAAAATAAGTGACT 60.307 47.826 0.00 0.00 0.00 3.41
5607 8373 3.007635 CCTCCGTCCCAAAATAAGTGAC 58.992 50.000 0.00 0.00 0.00 3.67
5608 8374 2.026636 CCCTCCGTCCCAAAATAAGTGA 60.027 50.000 0.00 0.00 0.00 3.41
5609 8375 2.026636 TCCCTCCGTCCCAAAATAAGTG 60.027 50.000 0.00 0.00 0.00 3.16
5610 8376 2.238898 CTCCCTCCGTCCCAAAATAAGT 59.761 50.000 0.00 0.00 0.00 2.24
5611 8377 2.238898 ACTCCCTCCGTCCCAAAATAAG 59.761 50.000 0.00 0.00 0.00 1.73
5612 8378 2.271777 ACTCCCTCCGTCCCAAAATAA 58.728 47.619 0.00 0.00 0.00 1.40
5613 8379 1.961133 ACTCCCTCCGTCCCAAAATA 58.039 50.000 0.00 0.00 0.00 1.40
5614 8380 1.961133 TACTCCCTCCGTCCCAAAAT 58.039 50.000 0.00 0.00 0.00 1.82
5615 8381 1.961133 ATACTCCCTCCGTCCCAAAA 58.039 50.000 0.00 0.00 0.00 2.44
5616 8382 2.767960 GTTATACTCCCTCCGTCCCAAA 59.232 50.000 0.00 0.00 0.00 3.28
5617 8383 2.023695 AGTTATACTCCCTCCGTCCCAA 60.024 50.000 0.00 0.00 0.00 4.12
5618 8384 1.572415 AGTTATACTCCCTCCGTCCCA 59.428 52.381 0.00 0.00 0.00 4.37
5619 8385 2.378378 AGTTATACTCCCTCCGTCCC 57.622 55.000 0.00 0.00 0.00 4.46
5620 8386 3.703052 TCAAAGTTATACTCCCTCCGTCC 59.297 47.826 0.00 0.00 0.00 4.79
5621 8387 4.996788 TCAAAGTTATACTCCCTCCGTC 57.003 45.455 0.00 0.00 0.00 4.79
5622 8388 4.382793 GCTTCAAAGTTATACTCCCTCCGT 60.383 45.833 0.00 0.00 0.00 4.69
5623 8389 4.120589 GCTTCAAAGTTATACTCCCTCCG 58.879 47.826 0.00 0.00 0.00 4.63
5624 8390 5.099042 TGCTTCAAAGTTATACTCCCTCC 57.901 43.478 0.00 0.00 0.00 4.30
5625 8391 8.910351 ATATTGCTTCAAAGTTATACTCCCTC 57.090 34.615 0.00 0.00 0.00 4.30
5686 8452 6.756542 AGTTTCAAAGCTGTATTGGACAAAAC 59.243 34.615 0.00 0.00 37.70 2.43
5709 8475 6.365520 CCAAACAATAGGGGAGCTTATAAGT 58.634 40.000 13.91 1.21 0.00 2.24
5714 8480 2.357777 GCCCAAACAATAGGGGAGCTTA 60.358 50.000 0.00 0.00 45.08 3.09
5715 8481 1.619704 GCCCAAACAATAGGGGAGCTT 60.620 52.381 0.00 0.00 45.08 3.74
5719 8486 2.241176 CTGTAGCCCAAACAATAGGGGA 59.759 50.000 0.00 0.00 45.08 4.81
5942 9209 6.194235 AGTGGGCAATGGTCATAGAAATTAA 58.806 36.000 0.00 0.00 0.00 1.40
6011 9278 2.202295 TTGCTTCAAACCAACTTCGC 57.798 45.000 0.00 0.00 0.00 4.70
6025 9293 1.002468 GCGAGTGTCACAACATTGCTT 60.002 47.619 5.62 0.00 37.81 3.91
6245 9526 2.481854 CATGCATCGGAGAGAAGAAGG 58.518 52.381 0.00 0.00 43.63 3.46
6521 9848 1.153978 CATGGCACGATGGTGTTGC 60.154 57.895 9.74 0.00 46.13 4.17
6526 9853 1.745115 CGGTTCATGGCACGATGGT 60.745 57.895 0.00 0.00 0.00 3.55
6552 9879 3.496884 TGTCTCAATGGAAACTACAACGC 59.503 43.478 0.00 0.00 0.00 4.84
6668 9995 5.424895 AGAGAAGGATCATCATGTATAGGGC 59.575 44.000 0.00 0.00 0.00 5.19
6767 10100 9.545105 ACGTTCCATAATTTCAACGGTAATATA 57.455 29.630 7.83 0.00 44.63 0.86
6768 10101 8.339714 CACGTTCCATAATTTCAACGGTAATAT 58.660 33.333 7.83 0.00 44.63 1.28
6769 10102 7.548427 TCACGTTCCATAATTTCAACGGTAATA 59.452 33.333 7.83 0.00 44.63 0.98
6770 10103 6.372103 TCACGTTCCATAATTTCAACGGTAAT 59.628 34.615 7.83 0.00 44.63 1.89
6780 10113 7.757526 TCAATTCGATTCACGTTCCATAATTT 58.242 30.769 0.00 0.00 43.13 1.82
6794 10127 5.582269 TCTCCATCACAACTCAATTCGATTC 59.418 40.000 0.00 0.00 0.00 2.52
6811 10144 7.147312 TGATCAACAAAACAACAATCTCCATC 58.853 34.615 0.00 0.00 0.00 3.51
6868 10205 6.844917 AGGGACTAGTATTTACTTGCCAGTAT 59.155 38.462 0.00 0.00 36.02 2.12
6869 10206 6.200114 AGGGACTAGTATTTACTTGCCAGTA 58.800 40.000 0.00 0.00 36.02 2.74
6870 10207 5.030820 AGGGACTAGTATTTACTTGCCAGT 58.969 41.667 0.00 0.00 36.02 4.00
6888 10225 6.817140 CACCTTACATTAAGTTACAGAGGGAC 59.183 42.308 0.00 0.00 33.96 4.46
6961 10298 1.363744 CAAGCAAAGCTACTCCCTCG 58.636 55.000 0.00 0.00 38.25 4.63
6972 10309 2.429610 CCCCATGAATCTCCAAGCAAAG 59.570 50.000 0.00 0.00 0.00 2.77
6974 10311 1.358787 ACCCCATGAATCTCCAAGCAA 59.641 47.619 0.00 0.00 0.00 3.91
6975 10312 1.002069 ACCCCATGAATCTCCAAGCA 58.998 50.000 0.00 0.00 0.00 3.91
6976 10313 2.027385 GAACCCCATGAATCTCCAAGC 58.973 52.381 0.00 0.00 0.00 4.01
6977 10314 3.659183 AGAACCCCATGAATCTCCAAG 57.341 47.619 0.00 0.00 0.00 3.61
6978 10315 4.370776 TCTAGAACCCCATGAATCTCCAA 58.629 43.478 0.00 0.00 0.00 3.53
6979 10316 4.007581 TCTAGAACCCCATGAATCTCCA 57.992 45.455 0.00 0.00 0.00 3.86
6980 10317 4.745172 GCTTCTAGAACCCCATGAATCTCC 60.745 50.000 0.00 0.00 0.00 3.71
6981 10318 4.141620 TGCTTCTAGAACCCCATGAATCTC 60.142 45.833 0.00 0.00 0.00 2.75
6984 10321 3.782523 TCTGCTTCTAGAACCCCATGAAT 59.217 43.478 0.00 0.00 0.00 2.57
6989 10326 2.551270 ACATCTGCTTCTAGAACCCCA 58.449 47.619 0.00 0.00 0.00 4.96
6991 10328 5.966742 AAAAACATCTGCTTCTAGAACCC 57.033 39.130 0.00 0.00 0.00 4.11
7017 10354 4.003788 ACCTCGAAGCCACGGTGG 62.004 66.667 22.87 22.87 41.55 4.61
7018 10355 2.738521 CACCTCGAAGCCACGGTG 60.739 66.667 5.03 5.03 40.71 4.94
7019 10356 4.003788 CCACCTCGAAGCCACGGT 62.004 66.667 0.61 0.00 0.00 4.83
7037 10379 1.749258 GGATCTTTGACCGGCCCAC 60.749 63.158 0.00 0.00 0.00 4.61
7047 10389 2.008268 GCATGCGGGGTGGATCTTTG 62.008 60.000 0.00 0.00 0.00 2.77
7062 10404 0.514255 CCCGTCTGATATTGCGCATG 59.486 55.000 12.75 0.00 0.00 4.06
7067 10409 0.886490 CCAGGCCCGTCTGATATTGC 60.886 60.000 0.00 0.00 36.93 3.56
7072 10414 1.213296 AATAACCAGGCCCGTCTGAT 58.787 50.000 0.00 0.00 36.93 2.90
7078 10420 1.029947 AGCGAAAATAACCAGGCCCG 61.030 55.000 0.00 0.00 0.00 6.13
7084 10426 2.420967 GGCCCTCTAGCGAAAATAACCA 60.421 50.000 0.00 0.00 0.00 3.67
7113 11027 2.125673 CTACGCACTTCCCCACGG 60.126 66.667 0.00 0.00 0.00 4.94
7114 11028 1.012486 GTTCTACGCACTTCCCCACG 61.012 60.000 0.00 0.00 0.00 4.94
7124 11038 0.947180 GGCCTTGTTCGTTCTACGCA 60.947 55.000 0.00 0.00 42.21 5.24
7130 11044 0.601841 TCGGAAGGCCTTGTTCGTTC 60.602 55.000 26.25 6.22 0.00 3.95
7139 11053 0.973496 GGAGAGTTCTCGGAAGGCCT 60.973 60.000 0.00 0.00 43.76 5.19
7140 11054 1.258445 TGGAGAGTTCTCGGAAGGCC 61.258 60.000 0.00 0.00 43.76 5.19
7141 11055 0.174617 CTGGAGAGTTCTCGGAAGGC 59.825 60.000 3.24 0.00 43.76 4.35
7143 11057 0.174617 GCCTGGAGAGTTCTCGGAAG 59.825 60.000 0.00 3.71 43.76 3.46
7145 11059 2.046864 CGCCTGGAGAGTTCTCGGA 61.047 63.158 0.00 0.00 43.76 4.55
7146 11060 2.492090 CGCCTGGAGAGTTCTCGG 59.508 66.667 0.00 1.64 43.76 4.63
7147 11061 2.492090 CCGCCTGGAGAGTTCTCG 59.508 66.667 0.00 0.00 43.76 4.04
7148 11062 2.185608 GCCGCCTGGAGAGTTCTC 59.814 66.667 0.00 0.39 42.14 2.87
7149 11063 3.764466 CGCCGCCTGGAGAGTTCT 61.764 66.667 0.00 0.00 37.19 3.01
7150 11064 4.821589 CCGCCGCCTGGAGAGTTC 62.822 72.222 0.00 0.00 37.19 3.01
7171 11120 2.046120 AGCAGAGAGGCAGCAAGC 60.046 61.111 0.00 0.00 44.65 4.01
7172 11121 1.449956 GGAGCAGAGAGGCAGCAAG 60.450 63.158 0.00 0.00 35.83 4.01
7173 11122 2.667418 GGAGCAGAGAGGCAGCAA 59.333 61.111 0.00 0.00 35.83 3.91
7174 11123 3.397439 GGGAGCAGAGAGGCAGCA 61.397 66.667 0.00 0.00 35.83 4.41
7175 11124 3.397439 TGGGAGCAGAGAGGCAGC 61.397 66.667 0.00 0.00 35.83 5.25
7176 11125 2.583520 GTGGGAGCAGAGAGGCAG 59.416 66.667 0.00 0.00 35.83 4.85
7177 11126 3.005539 GGTGGGAGCAGAGAGGCA 61.006 66.667 0.00 0.00 35.83 4.75
7178 11127 4.154347 CGGTGGGAGCAGAGAGGC 62.154 72.222 0.00 0.00 0.00 4.70
7179 11128 4.154347 GCGGTGGGAGCAGAGAGG 62.154 72.222 0.00 0.00 34.19 3.69
7218 11179 2.435586 CAAGCTGCTCACGGGAGG 60.436 66.667 18.15 1.02 41.67 4.30
7219 11180 1.739562 GTCAAGCTGCTCACGGGAG 60.740 63.158 11.30 11.30 44.33 4.30
7442 11572 4.323417 TGAATTAGTTGTAGGCACCAGTG 58.677 43.478 0.00 0.00 0.00 3.66
7445 11575 4.634012 ACTGAATTAGTTGTAGGCACCA 57.366 40.909 0.00 0.00 35.67 4.17
7456 11586 8.160106 AGAAACCAATCTCAGAACTGAATTAGT 58.840 33.333 6.01 5.80 42.89 2.24
7459 11589 7.503566 TGAAGAAACCAATCTCAGAACTGAATT 59.496 33.333 6.01 6.30 39.39 2.17
7481 11611 0.320771 CCCACCGAGAACACCTGAAG 60.321 60.000 0.00 0.00 0.00 3.02
7498 11642 3.732849 CCTCTGAACCTGGGGCCC 61.733 72.222 18.17 18.17 0.00 5.80


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.