Multiple sequence alignment - TraesCS2D01G013000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2D01G013000 chr2D 100.000 3942 0 0 1 3942 6506849 6510790 0.000000e+00 7280.0
1 TraesCS2D01G013000 chr2D 95.833 96 4 0 1 96 585031535 585031630 5.270000e-34 156.0
2 TraesCS2D01G013000 chr2D 82.178 101 17 1 3200 3300 6511262 6511163 7.020000e-13 86.1
3 TraesCS2D01G013000 chr2A 92.182 2149 150 7 1 2149 4906022 4908152 0.000000e+00 3022.0
4 TraesCS2D01G013000 chr2A 88.005 842 71 18 2158 2988 4908586 4909408 0.000000e+00 968.0
5 TraesCS2D01G013000 chrUn 86.677 1231 153 11 1389 2615 16163364 16162141 0.000000e+00 1354.0
6 TraesCS2D01G013000 chr3A 93.750 272 15 2 3199 3470 722237837 722237568 1.320000e-109 407.0
7 TraesCS2D01G013000 chr3A 91.912 272 15 3 3543 3811 722237418 722237151 1.340000e-99 374.0
8 TraesCS2D01G013000 chr3A 90.265 113 9 2 3831 3942 722237166 722237055 3.170000e-31 147.0
9 TraesCS2D01G013000 chr3A 100.000 58 0 0 3479 3536 722237579 722237522 1.500000e-19 108.0
10 TraesCS2D01G013000 chr7B 96.875 96 3 0 1 96 720099477 720099572 1.130000e-35 161.0
11 TraesCS2D01G013000 chr4B 96.842 95 3 0 1 95 255442209 255442303 4.080000e-35 159.0
12 TraesCS2D01G013000 chr4B 95.789 95 4 0 1 95 255666370 255666276 1.900000e-33 154.0
13 TraesCS2D01G013000 chr4B 95.789 95 4 0 1 95 564166514 564166608 1.900000e-33 154.0
14 TraesCS2D01G013000 chr2B 94.845 97 5 0 1 97 646065514 646065418 6.820000e-33 152.0
15 TraesCS2D01G013000 chr1B 93.939 99 6 0 1 99 594836897 594836799 2.450000e-32 150.0
16 TraesCS2D01G013000 chr5D 93.814 97 6 0 1 97 216140659 216140563 3.170000e-31 147.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2D01G013000 chr2D 6506849 6510790 3941 False 7280 7280 100.00000 1 3942 1 chr2D.!!$F1 3941
1 TraesCS2D01G013000 chr2A 4906022 4909408 3386 False 1995 3022 90.09350 1 2988 2 chr2A.!!$F1 2987
2 TraesCS2D01G013000 chrUn 16162141 16163364 1223 True 1354 1354 86.67700 1389 2615 1 chrUn.!!$R1 1226
3 TraesCS2D01G013000 chr3A 722237055 722237837 782 True 259 407 93.98175 3199 3942 4 chr3A.!!$R1 743

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
405 406 0.096454 GAAAACATACGCCTGGACGC 59.904 55.0 0.0 0.0 36.19 5.19 F
938 939 0.256752 CCTTCAGGCATCCACCATCA 59.743 55.0 0.0 0.0 0.00 3.07 F
1188 1189 0.593128 CCTTTCAACCACTCAAGCCG 59.407 55.0 0.0 0.0 0.00 5.52 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2208 2634 0.036306 ACGTGGACAAGGGGAACATC 59.964 55.0 0.00 0.00 0.00 3.06 R
2219 2646 0.181587 ATTTGGGTGACACGTGGACA 59.818 50.0 21.57 16.35 0.00 4.02 R
3050 3485 0.106918 TAAGCCCCCGAATGCGAAAT 60.107 50.0 0.00 0.00 40.82 2.17 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
58 59 2.693797 ACGAGTTTTAGCGAGTCGAA 57.306 45.000 18.61 0.00 41.28 3.71
67 68 1.226435 GCGAGTCGAATCGAGCTGT 60.226 57.895 36.06 0.00 45.56 4.40
110 111 7.450903 TCCAGCCCTATAAATAAGTTAGCTTC 58.549 38.462 0.00 0.00 36.22 3.86
128 129 4.288626 AGCTTCCACCATCCAGTTACTAAA 59.711 41.667 0.00 0.00 0.00 1.85
138 139 7.563924 ACCATCCAGTTACTAAATAGCTAGTGA 59.436 37.037 0.00 0.00 34.03 3.41
251 252 0.788391 CCGTGTTAGTGGCTTTCGTC 59.212 55.000 0.00 0.00 0.00 4.20
258 259 5.407387 GTGTTAGTGGCTTTCGTCAAATAGA 59.593 40.000 0.00 0.00 0.00 1.98
259 260 5.992829 TGTTAGTGGCTTTCGTCAAATAGAA 59.007 36.000 0.00 0.00 0.00 2.10
262 263 6.575162 AGTGGCTTTCGTCAAATAGAAAAT 57.425 33.333 0.00 0.00 36.14 1.82
298 299 8.539117 AAAATAAAAATAGTAGCAGCCTGGAT 57.461 30.769 0.00 0.00 0.00 3.41
299 300 7.516198 AATAAAAATAGTAGCAGCCTGGATG 57.484 36.000 7.77 7.77 0.00 3.51
324 325 6.426646 AGAGAGGATACATGGTGGTTATTC 57.573 41.667 0.00 0.00 41.41 1.75
329 330 6.910191 AGGATACATGGTGGTTATTCATTCA 58.090 36.000 0.00 0.00 41.41 2.57
331 332 8.668653 AGGATACATGGTGGTTATTCATTCATA 58.331 33.333 0.00 0.00 41.41 2.15
374 375 2.695147 CAAAGCTCTCCCAGTTTTGGTT 59.305 45.455 3.69 0.00 45.18 3.67
376 377 1.777272 AGCTCTCCCAGTTTTGGTTCT 59.223 47.619 0.00 0.00 43.40 3.01
383 384 6.133356 TCTCCCAGTTTTGGTTCTAATTTGT 58.867 36.000 0.00 0.00 43.40 2.83
399 400 2.279935 TTGTGGGAAAACATACGCCT 57.720 45.000 0.00 0.00 0.00 5.52
400 401 1.529226 TGTGGGAAAACATACGCCTG 58.471 50.000 0.00 0.00 0.00 4.85
405 406 0.096454 GAAAACATACGCCTGGACGC 59.904 55.000 0.00 0.00 36.19 5.19
415 416 2.100631 CCTGGACGCATCGGTGAAC 61.101 63.158 0.00 0.00 0.00 3.18
464 465 0.601841 GTGTCCGGACATGTCGGTTT 60.602 55.000 38.11 0.00 46.82 3.27
483 484 2.408835 GATGGATGCGGCGGTTTG 59.591 61.111 9.78 0.00 0.00 2.93
508 509 1.741401 CGCTTTGGAGATGCCGACA 60.741 57.895 0.00 0.00 40.66 4.35
522 523 5.747197 AGATGCCGACATAGTAAAAGTTACG 59.253 40.000 0.00 0.00 36.35 3.18
554 555 1.134946 CGGGCTTGCTGATTTAAAGGG 59.865 52.381 0.00 0.00 0.00 3.95
599 600 4.539235 GGCCCACCCACTGAAATT 57.461 55.556 0.00 0.00 0.00 1.82
636 637 6.946583 GGGGAGAACATTTAGTTAGAAAGGTT 59.053 38.462 0.00 0.00 43.75 3.50
667 668 3.623960 CGTTGGTAAAACCTTCACAGTCA 59.376 43.478 0.00 0.00 39.58 3.41
672 673 3.782889 AAAACCTTCACAGTCACAAGC 57.217 42.857 0.00 0.00 0.00 4.01
673 674 2.418368 AACCTTCACAGTCACAAGCA 57.582 45.000 0.00 0.00 0.00 3.91
719 720 5.183969 TGATCCGATAATCCTAGACCTACG 58.816 45.833 0.00 0.00 0.00 3.51
751 752 5.354792 ACGAAAGATCTCTACGTAAGCTTCT 59.645 40.000 16.20 0.00 45.62 2.85
767 768 4.826556 AGCTTCTTAACAATTCGCTCTCT 58.173 39.130 0.00 0.00 0.00 3.10
768 769 4.867608 AGCTTCTTAACAATTCGCTCTCTC 59.132 41.667 0.00 0.00 0.00 3.20
769 770 4.867608 GCTTCTTAACAATTCGCTCTCTCT 59.132 41.667 0.00 0.00 0.00 3.10
782 783 4.104776 CGCTCTCTCTCTCTGATTTTCAC 58.895 47.826 0.00 0.00 0.00 3.18
785 786 2.851235 CTCTCTCTCTGATTTTCACGCG 59.149 50.000 3.53 3.53 0.00 6.01
801 802 3.330720 CGGGTGGGCTCCTTCCTT 61.331 66.667 0.00 0.00 0.00 3.36
812 813 2.389715 CTCCTTCCTTCCCGTATCACT 58.610 52.381 0.00 0.00 0.00 3.41
821 822 4.202030 CCTTCCCGTATCACTAGTCTTCAC 60.202 50.000 0.00 0.00 0.00 3.18
837 838 0.953727 TCACTGTTCATGTTGCCTGC 59.046 50.000 0.00 0.00 0.00 4.85
838 839 0.669619 CACTGTTCATGTTGCCTGCA 59.330 50.000 0.00 0.00 0.00 4.41
847 848 4.746729 TCATGTTGCCTGCAATGTTAATC 58.253 39.130 7.94 0.00 38.28 1.75
849 850 2.233431 TGTTGCCTGCAATGTTAATCCC 59.767 45.455 7.94 0.00 38.28 3.85
852 853 1.065551 GCCTGCAATGTTAATCCCGTC 59.934 52.381 0.00 0.00 0.00 4.79
857 858 3.057876 TGCAATGTTAATCCCGTCACAAC 60.058 43.478 0.00 0.00 0.00 3.32
861 862 5.622770 ATGTTAATCCCGTCACAACTTTC 57.377 39.130 0.00 0.00 0.00 2.62
886 887 8.127327 TCACGTAGATGTAGCATTACTCTTTAC 58.873 37.037 0.00 0.00 0.00 2.01
916 917 2.856760 TGGGAGGAAGTAGCTGAGAT 57.143 50.000 0.00 0.00 0.00 2.75
936 937 0.920763 TCCCTTCAGGCATCCACCAT 60.921 55.000 0.00 0.00 34.51 3.55
937 938 0.466922 CCCTTCAGGCATCCACCATC 60.467 60.000 0.00 0.00 0.00 3.51
938 939 0.256752 CCTTCAGGCATCCACCATCA 59.743 55.000 0.00 0.00 0.00 3.07
939 940 1.386533 CTTCAGGCATCCACCATCAC 58.613 55.000 0.00 0.00 0.00 3.06
940 941 0.697658 TTCAGGCATCCACCATCACA 59.302 50.000 0.00 0.00 0.00 3.58
941 942 0.697658 TCAGGCATCCACCATCACAA 59.302 50.000 0.00 0.00 0.00 3.33
942 943 1.075212 TCAGGCATCCACCATCACAAA 59.925 47.619 0.00 0.00 0.00 2.83
943 944 1.475280 CAGGCATCCACCATCACAAAG 59.525 52.381 0.00 0.00 0.00 2.77
944 945 1.076024 AGGCATCCACCATCACAAAGT 59.924 47.619 0.00 0.00 0.00 2.66
945 946 1.895131 GGCATCCACCATCACAAAGTT 59.105 47.619 0.00 0.00 0.00 2.66
946 947 2.353011 GGCATCCACCATCACAAAGTTG 60.353 50.000 0.00 0.00 0.00 3.16
1026 1027 3.003585 TGCAGCGCTTTATAATGGACATG 59.996 43.478 7.50 0.00 0.00 3.21
1032 1033 5.107065 GCGCTTTATAATGGACATGGACTAC 60.107 44.000 0.00 0.00 0.00 2.73
1046 1047 0.752376 GACTACTCAGCGGTAGGGCT 60.752 60.000 15.21 0.00 46.13 5.19
1056 1057 1.014352 CGGTAGGGCTGCAACAATAC 58.986 55.000 0.50 0.00 0.00 1.89
1057 1058 1.677518 CGGTAGGGCTGCAACAATACA 60.678 52.381 0.50 0.00 0.00 2.29
1058 1059 2.654863 GGTAGGGCTGCAACAATACAT 58.345 47.619 0.50 0.00 0.00 2.29
1059 1060 3.742954 CGGTAGGGCTGCAACAATACATA 60.743 47.826 0.50 0.00 0.00 2.29
1064 1065 2.291741 GGCTGCAACAATACATAGCTCC 59.708 50.000 0.50 0.00 0.00 4.70
1074 1075 6.951971 ACAATACATAGCTCCCATATCTTCC 58.048 40.000 0.00 0.00 0.00 3.46
1077 1078 4.442707 ACATAGCTCCCATATCTTCCCAT 58.557 43.478 0.00 0.00 0.00 4.00
1082 1083 4.043435 AGCTCCCATATCTTCCCATAAACC 59.957 45.833 0.00 0.00 0.00 3.27
1185 1186 2.508526 CTCCCCTTTCAACCACTCAAG 58.491 52.381 0.00 0.00 0.00 3.02
1188 1189 0.593128 CCTTTCAACCACTCAAGCCG 59.407 55.000 0.00 0.00 0.00 5.52
1189 1190 1.308998 CTTTCAACCACTCAAGCCGT 58.691 50.000 0.00 0.00 0.00 5.68
1196 1197 0.670546 CCACTCAAGCCGTCGTCAAT 60.671 55.000 0.00 0.00 0.00 2.57
1245 1246 2.743928 GCCACGGCTCTGAACCTG 60.744 66.667 0.00 0.00 38.26 4.00
1493 1494 4.129737 CGACGGGATGCTCCACGT 62.130 66.667 5.94 5.94 42.93 4.49
1500 1501 2.048222 ATGCTCCACGTGGTGTCG 60.048 61.111 32.74 19.97 36.34 4.35
1740 1741 1.590147 CGGGCTCGTCTACTTTGGT 59.410 57.895 0.00 0.00 0.00 3.67
1742 1743 0.606604 GGGCTCGTCTACTTTGGTGA 59.393 55.000 0.00 0.00 0.00 4.02
1746 1747 1.268899 CTCGTCTACTTTGGTGACCGT 59.731 52.381 0.00 0.00 0.00 4.83
1758 1759 3.200593 GACCGTCTCCTCGCGCTA 61.201 66.667 5.56 0.00 0.00 4.26
1761 1762 2.255172 CCGTCTCCTCGCGCTATCT 61.255 63.158 5.56 0.00 0.00 1.98
1768 1769 1.082431 CTCGCGCTATCTGAGGACG 60.082 63.158 5.56 0.00 0.00 4.79
1782 1783 1.226888 GGACGACCTGCCGTATCAC 60.227 63.158 0.00 0.00 43.49 3.06
1818 1819 3.373226 GGTGACCTGAGCACCGTA 58.627 61.111 0.00 0.00 45.50 4.02
1863 1864 3.341043 CGCTCCCCAATGATCGCG 61.341 66.667 0.00 0.00 34.50 5.87
2026 2027 2.513065 GATGGTGCACGACTTTGCCG 62.513 60.000 11.45 0.00 42.25 5.69
2036 2037 1.282930 GACTTTGCCGTCACCGAGAC 61.283 60.000 0.00 0.00 44.02 3.36
2041 2042 2.927580 GCCGTCACCGAGACCTTCA 61.928 63.158 2.96 0.00 44.66 3.02
2052 2053 1.221021 GACCTTCACCGTGATCCCC 59.779 63.158 1.09 0.00 0.00 4.81
2081 2082 3.124921 GGTGTTCGACATGGGCCG 61.125 66.667 0.00 0.00 0.00 6.13
2142 2143 3.145551 GTCTCCCGCTTCGGCCTA 61.146 66.667 0.00 0.00 46.86 3.93
2174 2600 1.450848 TACAGCTGCATGCAGAGCC 60.451 57.895 44.02 28.85 46.30 4.70
2177 2603 2.181021 GCTGCATGCAGAGCCAAC 59.819 61.111 44.02 25.03 46.30 3.77
2179 2605 1.506718 CTGCATGCAGAGCCAACAG 59.493 57.895 38.90 12.55 46.30 3.16
2180 2606 2.181021 GCATGCAGAGCCAACAGC 59.819 61.111 14.21 0.00 44.25 4.40
2181 2607 2.882876 CATGCAGAGCCAACAGCC 59.117 61.111 0.00 0.00 45.47 4.85
2182 2608 1.974875 CATGCAGAGCCAACAGCCA 60.975 57.895 0.00 0.00 45.47 4.75
2185 2611 2.882876 CAGAGCCAACAGCCATGC 59.117 61.111 0.00 0.00 45.47 4.06
2186 2612 1.974875 CAGAGCCAACAGCCATGCA 60.975 57.895 0.00 0.00 45.47 3.96
2187 2613 1.000019 AGAGCCAACAGCCATGCAT 60.000 52.632 0.00 0.00 45.47 3.96
2188 2614 1.141019 GAGCCAACAGCCATGCATG 59.859 57.895 20.19 20.19 45.47 4.06
2189 2615 1.601419 GAGCCAACAGCCATGCATGT 61.601 55.000 24.58 5.31 45.47 3.21
2190 2616 1.153706 GCCAACAGCCATGCATGTC 60.154 57.895 24.58 13.23 34.35 3.06
2198 2624 1.421093 CCATGCATGTCGACACGTG 59.579 57.895 22.71 19.34 41.87 4.49
2208 2634 3.675481 TGTCGACACGTGTCAAAATTTG 58.325 40.909 39.14 24.89 44.99 2.32
2219 2646 5.610398 GTGTCAAAATTTGATGTTCCCCTT 58.390 37.500 11.87 0.00 42.47 3.95
2234 2661 1.597027 CCTTGTCCACGTGTCACCC 60.597 63.158 15.65 0.00 0.00 4.61
2235 2662 1.145156 CTTGTCCACGTGTCACCCA 59.855 57.895 15.65 0.35 0.00 4.51
2236 2663 0.462937 CTTGTCCACGTGTCACCCAA 60.463 55.000 15.65 8.33 0.00 4.12
2237 2664 0.035343 TTGTCCACGTGTCACCCAAA 60.035 50.000 15.65 0.00 0.00 3.28
2238 2665 0.181587 TGTCCACGTGTCACCCAAAT 59.818 50.000 15.65 0.00 0.00 2.32
2252 2679 3.020984 ACCCAAATTTTCACACGTGTCT 58.979 40.909 20.49 0.00 0.00 3.41
2254 2681 4.825085 ACCCAAATTTTCACACGTGTCTAT 59.175 37.500 20.49 6.87 0.00 1.98
2256 2683 5.079406 CCAAATTTTCACACGTGTCTATCG 58.921 41.667 20.49 7.49 0.00 2.92
2257 2684 5.107259 CCAAATTTTCACACGTGTCTATCGA 60.107 40.000 20.49 10.08 0.00 3.59
2258 2685 6.402118 CCAAATTTTCACACGTGTCTATCGAT 60.402 38.462 20.49 2.16 0.00 3.59
2259 2686 5.702622 ATTTTCACACGTGTCTATCGATG 57.297 39.130 20.49 5.11 0.00 3.84
2260 2687 2.844122 TCACACGTGTCTATCGATGG 57.156 50.000 20.49 5.03 0.00 3.51
2262 2689 2.490509 TCACACGTGTCTATCGATGGTT 59.509 45.455 20.49 0.00 0.00 3.67
2263 2690 3.057104 TCACACGTGTCTATCGATGGTTT 60.057 43.478 20.49 0.00 0.00 3.27
2264 2691 3.060761 CACACGTGTCTATCGATGGTTTG 59.939 47.826 20.49 0.00 0.00 2.93
2269 2696 4.403453 GTGTCTATCGATGGTTTGTTTGC 58.597 43.478 8.54 0.00 0.00 3.68
2272 2699 4.631813 GTCTATCGATGGTTTGTTTGCTCT 59.368 41.667 8.54 0.00 0.00 4.09
2273 2700 3.837213 ATCGATGGTTTGTTTGCTCTG 57.163 42.857 0.00 0.00 0.00 3.35
2275 2702 3.734463 TCGATGGTTTGTTTGCTCTGTA 58.266 40.909 0.00 0.00 0.00 2.74
2291 2718 4.083217 GCTCTGTATGTAGGTATGACTCGG 60.083 50.000 0.00 0.00 0.00 4.63
2296 2723 3.204306 TGTAGGTATGACTCGGACGAT 57.796 47.619 0.00 0.00 0.00 3.73
2299 2726 1.955080 AGGTATGACTCGGACGATTCC 59.045 52.381 9.14 0.00 38.77 3.01
2300 2727 1.000496 GGTATGACTCGGACGATTCCC 60.000 57.143 9.14 1.11 38.99 3.97
2314 2741 2.493273 ATTCCCGGATGCGGTGGTTT 62.493 55.000 24.84 1.47 0.00 3.27
2326 2753 2.589442 TGGTTTGACGTGCCGGAC 60.589 61.111 5.05 0.00 0.00 4.79
2404 2831 0.457853 CGGACACCGTCGTCATCATT 60.458 55.000 1.80 0.00 42.73 2.57
2439 2866 2.883253 GCCTGACGCGCTCTTCTC 60.883 66.667 5.73 0.00 0.00 2.87
2518 2945 3.900892 CTCCGGACGGGGATGTCG 61.901 72.222 4.19 0.00 38.23 4.35
2692 3119 1.413767 CTGTCGCGGTGCATCAGTAC 61.414 60.000 6.13 0.00 0.00 2.73
2701 3128 2.202878 CATCAGTACGGCACCGGG 60.203 66.667 14.51 0.00 44.69 5.73
2812 3239 3.177920 GCGAGCACGTCAGAGCTG 61.178 66.667 5.23 0.00 44.19 4.24
2818 3245 4.363990 ACGTCAGAGCTGGCCGTG 62.364 66.667 12.79 0.00 37.25 4.94
2821 3248 2.679996 TCAGAGCTGGCCGTGCTA 60.680 61.111 20.83 5.38 41.30 3.49
2908 3343 0.523757 GCGCGTTCCTCACTAGAGAC 60.524 60.000 8.43 0.00 44.98 3.36
2931 3366 0.605589 CTCGCCACTCAGAGGACTTT 59.394 55.000 1.53 0.00 0.00 2.66
2943 3378 5.772004 TCAGAGGACTTTTATCTCCTAGCT 58.228 41.667 0.00 0.00 37.00 3.32
2944 3379 6.912426 TCAGAGGACTTTTATCTCCTAGCTA 58.088 40.000 0.00 0.00 37.00 3.32
2945 3380 7.001674 TCAGAGGACTTTTATCTCCTAGCTAG 58.998 42.308 14.20 14.20 37.00 3.42
2946 3381 5.773176 AGAGGACTTTTATCTCCTAGCTAGC 59.227 44.000 15.74 6.62 37.00 3.42
2959 3394 8.200024 TCTCCTAGCTAGCATAATTTCATTCT 57.800 34.615 18.83 0.00 0.00 2.40
2961 3396 6.652481 TCCTAGCTAGCATAATTTCATTCTGC 59.348 38.462 18.83 0.00 41.16 4.26
2964 3399 9.212641 CTAGCTAGCATAATTTCATTCTGCTTA 57.787 33.333 18.83 2.29 46.46 3.09
2969 3404 7.869800 AGCATAATTTCATTCTGCTTAGCTAC 58.130 34.615 5.60 0.00 46.46 3.58
2982 3417 2.431954 TAGCTACTGGTAAGTCGCCT 57.568 50.000 0.00 0.00 44.21 5.52
2988 3423 4.874396 GCTACTGGTAAGTCGCCTAAAAAT 59.126 41.667 0.00 0.00 38.78 1.82
2989 3424 5.006455 GCTACTGGTAAGTCGCCTAAAAATC 59.994 44.000 0.00 0.00 38.78 2.17
2990 3425 4.901868 ACTGGTAAGTCGCCTAAAAATCA 58.098 39.130 0.00 0.00 26.77 2.57
2991 3426 5.497474 ACTGGTAAGTCGCCTAAAAATCAT 58.503 37.500 0.00 0.00 26.77 2.45
2992 3427 6.646267 ACTGGTAAGTCGCCTAAAAATCATA 58.354 36.000 0.00 0.00 26.77 2.15
2993 3428 7.280356 ACTGGTAAGTCGCCTAAAAATCATAT 58.720 34.615 0.00 0.00 26.77 1.78
2994 3429 7.773690 ACTGGTAAGTCGCCTAAAAATCATATT 59.226 33.333 0.00 0.00 26.77 1.28
2995 3430 8.514330 TGGTAAGTCGCCTAAAAATCATATTT 57.486 30.769 0.00 0.00 0.00 1.40
2996 3431 8.617809 TGGTAAGTCGCCTAAAAATCATATTTC 58.382 33.333 0.00 0.00 0.00 2.17
2997 3432 8.074370 GGTAAGTCGCCTAAAAATCATATTTCC 58.926 37.037 0.00 0.00 0.00 3.13
2998 3433 6.300354 AGTCGCCTAAAAATCATATTTCCG 57.700 37.500 0.00 0.00 0.00 4.30
2999 3434 4.909880 GTCGCCTAAAAATCATATTTCCGC 59.090 41.667 0.00 0.00 0.00 5.54
3000 3435 4.576873 TCGCCTAAAAATCATATTTCCGCA 59.423 37.500 0.00 0.00 0.00 5.69
3001 3436 5.240623 TCGCCTAAAAATCATATTTCCGCAT 59.759 36.000 0.00 0.00 0.00 4.73
3002 3437 5.343058 CGCCTAAAAATCATATTTCCGCATG 59.657 40.000 0.00 0.00 0.00 4.06
3003 3438 6.446318 GCCTAAAAATCATATTTCCGCATGA 58.554 36.000 0.00 0.00 35.72 3.07
3004 3439 6.922957 GCCTAAAAATCATATTTCCGCATGAA 59.077 34.615 0.00 0.00 34.96 2.57
3005 3440 7.115378 GCCTAAAAATCATATTTCCGCATGAAG 59.885 37.037 0.00 0.00 34.96 3.02
3006 3441 7.596248 CCTAAAAATCATATTTCCGCATGAAGG 59.404 37.037 0.00 0.00 34.96 3.46
3007 3442 6.713762 AAAATCATATTTCCGCATGAAGGA 57.286 33.333 0.00 0.74 34.96 3.36
3008 3443 6.713762 AAATCATATTTCCGCATGAAGGAA 57.286 33.333 16.17 16.17 45.19 3.36
3012 3447 2.858622 TTCCGCATGAAGGAAGCAG 58.141 52.632 16.17 0.00 42.33 4.24
3013 3448 1.308069 TTCCGCATGAAGGAAGCAGC 61.308 55.000 16.17 0.00 42.33 5.25
3014 3449 2.768492 CCGCATGAAGGAAGCAGCC 61.768 63.158 0.00 0.00 0.00 4.85
3015 3450 2.796651 GCATGAAGGAAGCAGCCG 59.203 61.111 0.00 0.00 0.00 5.52
3016 3451 2.768492 GCATGAAGGAAGCAGCCGG 61.768 63.158 0.00 0.00 0.00 6.13
3017 3452 1.377725 CATGAAGGAAGCAGCCGGT 60.378 57.895 1.90 0.00 0.00 5.28
3018 3453 1.377725 ATGAAGGAAGCAGCCGGTG 60.378 57.895 1.90 0.89 0.00 4.94
3019 3454 2.747855 GAAGGAAGCAGCCGGTGG 60.748 66.667 1.90 0.00 0.00 4.61
3020 3455 4.351054 AAGGAAGCAGCCGGTGGG 62.351 66.667 1.90 0.00 0.00 4.61
3022 3457 3.712907 GGAAGCAGCCGGTGGGTA 61.713 66.667 1.90 0.00 34.97 3.69
3023 3458 2.349755 GAAGCAGCCGGTGGGTAA 59.650 61.111 1.90 0.00 34.97 2.85
3024 3459 1.302993 GAAGCAGCCGGTGGGTAAA 60.303 57.895 1.90 0.00 34.97 2.01
3025 3460 0.891904 GAAGCAGCCGGTGGGTAAAA 60.892 55.000 1.90 0.00 34.97 1.52
3026 3461 0.251608 AAGCAGCCGGTGGGTAAAAT 60.252 50.000 1.90 0.00 34.97 1.82
3027 3462 0.679960 AGCAGCCGGTGGGTAAAATC 60.680 55.000 1.90 0.00 34.97 2.17
3028 3463 0.679960 GCAGCCGGTGGGTAAAATCT 60.680 55.000 1.90 0.00 34.97 2.40
3029 3464 1.407712 GCAGCCGGTGGGTAAAATCTA 60.408 52.381 1.90 0.00 34.97 1.98
3030 3465 2.942306 GCAGCCGGTGGGTAAAATCTAA 60.942 50.000 1.90 0.00 34.97 2.10
3031 3466 2.943033 CAGCCGGTGGGTAAAATCTAAG 59.057 50.000 1.90 0.00 34.97 2.18
3032 3467 2.841881 AGCCGGTGGGTAAAATCTAAGA 59.158 45.455 1.90 0.00 34.97 2.10
3033 3468 3.264964 AGCCGGTGGGTAAAATCTAAGAA 59.735 43.478 1.90 0.00 34.97 2.52
3034 3469 4.011698 GCCGGTGGGTAAAATCTAAGAAA 58.988 43.478 1.90 0.00 34.97 2.52
3035 3470 4.095932 GCCGGTGGGTAAAATCTAAGAAAG 59.904 45.833 1.90 0.00 34.97 2.62
3036 3471 4.095932 CCGGTGGGTAAAATCTAAGAAAGC 59.904 45.833 0.00 0.00 0.00 3.51
3037 3472 4.201783 CGGTGGGTAAAATCTAAGAAAGCG 60.202 45.833 0.00 0.00 0.00 4.68
3038 3473 4.939439 GGTGGGTAAAATCTAAGAAAGCGA 59.061 41.667 0.00 0.00 0.00 4.93
3039 3474 5.589050 GGTGGGTAAAATCTAAGAAAGCGAT 59.411 40.000 0.00 0.00 0.00 4.58
3040 3475 6.238402 GGTGGGTAAAATCTAAGAAAGCGATC 60.238 42.308 0.00 0.00 0.00 3.69
3041 3476 6.315393 GTGGGTAAAATCTAAGAAAGCGATCA 59.685 38.462 0.00 0.00 0.00 2.92
3042 3477 6.882140 TGGGTAAAATCTAAGAAAGCGATCAA 59.118 34.615 0.00 0.00 0.00 2.57
3043 3478 7.065803 TGGGTAAAATCTAAGAAAGCGATCAAG 59.934 37.037 0.00 0.00 0.00 3.02
3044 3479 6.907748 GGTAAAATCTAAGAAAGCGATCAAGC 59.092 38.462 0.00 0.00 37.41 4.01
3045 3480 5.491635 AAATCTAAGAAAGCGATCAAGCC 57.508 39.130 0.00 0.00 38.01 4.35
3046 3481 3.610040 TCTAAGAAAGCGATCAAGCCA 57.390 42.857 0.00 0.00 38.01 4.75
3047 3482 4.142609 TCTAAGAAAGCGATCAAGCCAT 57.857 40.909 0.00 0.00 38.01 4.40
3048 3483 4.517285 TCTAAGAAAGCGATCAAGCCATT 58.483 39.130 0.00 0.00 38.01 3.16
3049 3484 3.772060 AAGAAAGCGATCAAGCCATTC 57.228 42.857 0.00 0.00 38.01 2.67
3050 3485 2.715046 AGAAAGCGATCAAGCCATTCA 58.285 42.857 0.00 0.00 36.52 2.57
3051 3486 3.285484 AGAAAGCGATCAAGCCATTCAT 58.715 40.909 0.00 0.00 36.52 2.57
3052 3487 3.698040 AGAAAGCGATCAAGCCATTCATT 59.302 39.130 0.00 0.00 36.52 2.57
3053 3488 4.159135 AGAAAGCGATCAAGCCATTCATTT 59.841 37.500 0.00 0.00 36.52 2.32
3054 3489 3.705043 AGCGATCAAGCCATTCATTTC 57.295 42.857 0.00 0.00 38.01 2.17
3055 3490 2.032550 AGCGATCAAGCCATTCATTTCG 59.967 45.455 0.00 0.00 38.01 3.46
3056 3491 2.378806 CGATCAAGCCATTCATTTCGC 58.621 47.619 0.00 0.00 0.00 4.70
3057 3492 2.223317 CGATCAAGCCATTCATTTCGCA 60.223 45.455 0.00 0.00 0.00 5.10
3058 3493 3.549423 CGATCAAGCCATTCATTTCGCAT 60.549 43.478 0.00 0.00 0.00 4.73
3059 3494 3.872511 TCAAGCCATTCATTTCGCATT 57.127 38.095 0.00 0.00 0.00 3.56
3060 3495 3.772932 TCAAGCCATTCATTTCGCATTC 58.227 40.909 0.00 0.00 0.00 2.67
3061 3496 2.480224 AGCCATTCATTTCGCATTCG 57.520 45.000 0.00 0.00 0.00 3.34
3062 3497 1.066002 AGCCATTCATTTCGCATTCGG 59.934 47.619 0.00 0.00 36.13 4.30
3063 3498 1.865248 GCCATTCATTTCGCATTCGGG 60.865 52.381 0.00 0.00 36.13 5.14
3064 3499 1.269206 CCATTCATTTCGCATTCGGGG 60.269 52.381 0.00 0.00 36.13 5.73
3065 3500 1.032014 ATTCATTTCGCATTCGGGGG 58.968 50.000 0.00 0.00 36.13 5.40
3066 3501 1.662438 TTCATTTCGCATTCGGGGGC 61.662 55.000 0.00 0.00 36.13 5.80
3067 3502 2.120909 CATTTCGCATTCGGGGGCT 61.121 57.895 0.00 0.00 36.13 5.19
3068 3503 1.379843 ATTTCGCATTCGGGGGCTT 60.380 52.632 0.00 0.00 36.13 4.35
3069 3504 0.106918 ATTTCGCATTCGGGGGCTTA 60.107 50.000 0.00 0.00 36.13 3.09
3070 3505 0.322636 TTTCGCATTCGGGGGCTTAA 60.323 50.000 0.00 0.00 36.13 1.85
3071 3506 0.322636 TTCGCATTCGGGGGCTTAAA 60.323 50.000 0.00 0.00 36.13 1.52
3072 3507 0.322636 TCGCATTCGGGGGCTTAAAA 60.323 50.000 0.00 0.00 36.13 1.52
3073 3508 0.179148 CGCATTCGGGGGCTTAAAAC 60.179 55.000 0.00 0.00 0.00 2.43
3074 3509 0.179148 GCATTCGGGGGCTTAAAACG 60.179 55.000 0.00 0.00 0.00 3.60
3075 3510 1.455248 CATTCGGGGGCTTAAAACGA 58.545 50.000 0.00 0.00 0.00 3.85
3076 3511 1.813786 CATTCGGGGGCTTAAAACGAA 59.186 47.619 0.00 0.00 45.83 3.85
3077 3512 2.203470 TTCGGGGGCTTAAAACGAAT 57.797 45.000 0.00 0.00 38.46 3.34
3078 3513 1.741528 TCGGGGGCTTAAAACGAATC 58.258 50.000 0.00 0.00 0.00 2.52
3079 3514 0.375803 CGGGGGCTTAAAACGAATCG 59.624 55.000 0.00 0.00 0.00 3.34
3080 3515 1.741528 GGGGGCTTAAAACGAATCGA 58.258 50.000 10.55 0.00 0.00 3.59
3081 3516 1.669265 GGGGGCTTAAAACGAATCGAG 59.331 52.381 10.55 0.00 0.00 4.04
3082 3517 2.353323 GGGGCTTAAAACGAATCGAGT 58.647 47.619 10.55 0.00 0.00 4.18
3083 3518 3.524541 GGGGCTTAAAACGAATCGAGTA 58.475 45.455 10.55 0.00 0.00 2.59
3084 3519 3.934579 GGGGCTTAAAACGAATCGAGTAA 59.065 43.478 10.55 3.68 0.00 2.24
3085 3520 4.201753 GGGGCTTAAAACGAATCGAGTAAC 60.202 45.833 10.55 0.69 0.00 2.50
3086 3521 4.201753 GGGCTTAAAACGAATCGAGTAACC 60.202 45.833 10.55 8.20 0.00 2.85
3087 3522 4.628766 GGCTTAAAACGAATCGAGTAACCT 59.371 41.667 10.55 0.00 0.00 3.50
3088 3523 5.807011 GGCTTAAAACGAATCGAGTAACCTA 59.193 40.000 10.55 0.00 0.00 3.08
3089 3524 6.311200 GGCTTAAAACGAATCGAGTAACCTAA 59.689 38.462 10.55 0.00 0.00 2.69
3090 3525 7.148590 GGCTTAAAACGAATCGAGTAACCTAAA 60.149 37.037 10.55 0.00 0.00 1.85
3091 3526 8.223100 GCTTAAAACGAATCGAGTAACCTAAAA 58.777 33.333 10.55 0.00 0.00 1.52
3115 3550 8.682936 AAAATATTCTCAGTCAACTCACAACT 57.317 30.769 0.00 0.00 0.00 3.16
3116 3551 9.778741 AAAATATTCTCAGTCAACTCACAACTA 57.221 29.630 0.00 0.00 0.00 2.24
3117 3552 8.994429 AATATTCTCAGTCAACTCACAACTAG 57.006 34.615 0.00 0.00 0.00 2.57
3118 3553 5.854010 TTCTCAGTCAACTCACAACTAGT 57.146 39.130 0.00 0.00 0.00 2.57
3119 3554 5.440234 TCTCAGTCAACTCACAACTAGTC 57.560 43.478 0.00 0.00 0.00 2.59
3120 3555 4.887655 TCTCAGTCAACTCACAACTAGTCA 59.112 41.667 0.00 0.00 0.00 3.41
3121 3556 5.359860 TCTCAGTCAACTCACAACTAGTCAA 59.640 40.000 0.00 0.00 0.00 3.18
3122 3557 6.040955 TCTCAGTCAACTCACAACTAGTCAAT 59.959 38.462 0.00 0.00 0.00 2.57
3123 3558 6.216569 TCAGTCAACTCACAACTAGTCAATC 58.783 40.000 0.00 0.00 0.00 2.67
3124 3559 5.406780 CAGTCAACTCACAACTAGTCAATCC 59.593 44.000 0.00 0.00 0.00 3.01
3125 3560 4.691216 GTCAACTCACAACTAGTCAATCCC 59.309 45.833 0.00 0.00 0.00 3.85
3126 3561 4.346709 TCAACTCACAACTAGTCAATCCCA 59.653 41.667 0.00 0.00 0.00 4.37
3127 3562 4.974645 ACTCACAACTAGTCAATCCCAA 57.025 40.909 0.00 0.00 0.00 4.12
3128 3563 5.505181 ACTCACAACTAGTCAATCCCAAT 57.495 39.130 0.00 0.00 0.00 3.16
3129 3564 5.880901 ACTCACAACTAGTCAATCCCAATT 58.119 37.500 0.00 0.00 0.00 2.32
3130 3565 6.306987 ACTCACAACTAGTCAATCCCAATTT 58.693 36.000 0.00 0.00 0.00 1.82
3131 3566 6.207417 ACTCACAACTAGTCAATCCCAATTTG 59.793 38.462 0.00 0.00 0.00 2.32
3132 3567 6.068010 TCACAACTAGTCAATCCCAATTTGT 58.932 36.000 0.00 0.00 0.00 2.83
3133 3568 6.016360 TCACAACTAGTCAATCCCAATTTGTG 60.016 38.462 0.00 2.70 37.01 3.33
3134 3569 5.833131 ACAACTAGTCAATCCCAATTTGTGT 59.167 36.000 0.00 0.00 0.00 3.72
3135 3570 6.323739 ACAACTAGTCAATCCCAATTTGTGTT 59.676 34.615 0.00 0.00 0.00 3.32
3136 3571 6.575162 ACTAGTCAATCCCAATTTGTGTTC 57.425 37.500 0.00 0.00 0.00 3.18
3137 3572 6.306987 ACTAGTCAATCCCAATTTGTGTTCT 58.693 36.000 0.00 0.00 0.00 3.01
3138 3573 6.777580 ACTAGTCAATCCCAATTTGTGTTCTT 59.222 34.615 0.00 0.00 0.00 2.52
3139 3574 5.846203 AGTCAATCCCAATTTGTGTTCTTG 58.154 37.500 0.00 0.00 0.00 3.02
3140 3575 5.598005 AGTCAATCCCAATTTGTGTTCTTGA 59.402 36.000 0.00 0.00 0.00 3.02
3141 3576 6.098124 AGTCAATCCCAATTTGTGTTCTTGAA 59.902 34.615 0.00 0.00 0.00 2.69
3142 3577 6.930722 GTCAATCCCAATTTGTGTTCTTGAAT 59.069 34.615 0.00 0.00 0.00 2.57
3143 3578 7.442062 GTCAATCCCAATTTGTGTTCTTGAATT 59.558 33.333 0.00 0.00 0.00 2.17
3144 3579 8.646004 TCAATCCCAATTTGTGTTCTTGAATTA 58.354 29.630 0.00 0.00 0.00 1.40
3145 3580 9.439500 CAATCCCAATTTGTGTTCTTGAATTAT 57.561 29.630 0.00 0.00 0.00 1.28
3149 3584 8.872845 CCCAATTTGTGTTCTTGAATTATTAGC 58.127 33.333 0.00 0.00 0.00 3.09
3150 3585 9.643693 CCAATTTGTGTTCTTGAATTATTAGCT 57.356 29.630 0.00 0.00 0.00 3.32
3189 3624 8.049655 AGAAATCAAATCTGAACTTCTTAGCC 57.950 34.615 0.00 0.00 35.68 3.93
3190 3625 7.887495 AGAAATCAAATCTGAACTTCTTAGCCT 59.113 33.333 0.00 0.00 35.68 4.58
3191 3626 9.167311 GAAATCAAATCTGAACTTCTTAGCCTA 57.833 33.333 0.00 0.00 34.49 3.93
3192 3627 9.692325 AAATCAAATCTGAACTTCTTAGCCTAT 57.308 29.630 0.00 0.00 34.49 2.57
3193 3628 8.674263 ATCAAATCTGAACTTCTTAGCCTATG 57.326 34.615 0.00 0.00 34.49 2.23
3194 3629 6.540189 TCAAATCTGAACTTCTTAGCCTATGC 59.460 38.462 0.00 0.00 37.95 3.14
3195 3630 5.620738 ATCTGAACTTCTTAGCCTATGCA 57.379 39.130 0.00 0.00 41.13 3.96
3196 3631 5.420725 TCTGAACTTCTTAGCCTATGCAA 57.579 39.130 0.00 0.00 41.13 4.08
3197 3632 5.994250 TCTGAACTTCTTAGCCTATGCAAT 58.006 37.500 0.00 0.00 41.13 3.56
3198 3633 5.819379 TCTGAACTTCTTAGCCTATGCAATG 59.181 40.000 0.00 0.00 41.13 2.82
3199 3634 4.883585 TGAACTTCTTAGCCTATGCAATGG 59.116 41.667 0.00 0.00 41.13 3.16
3201 3636 2.957402 TCTTAGCCTATGCAATGGGG 57.043 50.000 9.88 2.52 46.56 4.96
3202 3637 1.425066 TCTTAGCCTATGCAATGGGGG 59.575 52.381 9.88 0.91 46.56 5.40
3226 3661 4.282195 GCAACTAGTATAGGATCAGCACCT 59.718 45.833 0.00 0.00 44.97 4.00
3227 3662 5.565834 GCAACTAGTATAGGATCAGCACCTC 60.566 48.000 0.00 0.00 44.97 3.85
3231 3666 4.551671 AGTATAGGATCAGCACCTCAAGT 58.448 43.478 0.00 0.00 38.76 3.16
3255 3690 0.249955 TCATGCGATCTGGTCAGCAA 59.750 50.000 10.50 0.00 38.90 3.91
3269 3704 1.179152 CAGCAAGACCATTGGATGCA 58.821 50.000 24.15 0.00 0.00 3.96
3275 3710 4.082895 GCAAGACCATTGGATGCATATCTC 60.083 45.833 20.23 0.00 33.68 2.75
3288 3723 7.173949 GGATGCATATCTCATGGTACAGATCG 61.174 46.154 0.00 0.00 35.97 3.69
3364 3799 9.384682 GACATTTTAGTACTCTTAGCGATACTC 57.615 37.037 0.00 0.00 0.00 2.59
3370 3805 6.114089 AGTACTCTTAGCGATACTCACTTGA 58.886 40.000 0.00 0.00 0.00 3.02
3383 3818 5.560966 ACTCACTTGACGTTGTTTGAAAT 57.439 34.783 0.00 0.00 0.00 2.17
3385 3820 5.799936 ACTCACTTGACGTTGTTTGAAATTG 59.200 36.000 0.00 0.00 0.00 2.32
3418 3853 9.760660 CAAGTAAGTTTCTACAGAATATTGTGC 57.239 33.333 12.27 0.00 33.54 4.57
3538 3973 4.817318 TTTTCCTTTTGTTGTTCAGGCT 57.183 36.364 0.00 0.00 0.00 4.58
3539 3974 3.799281 TTCCTTTTGTTGTTCAGGCTG 57.201 42.857 8.58 8.58 0.00 4.85
3541 3976 3.892284 TCCTTTTGTTGTTCAGGCTGTA 58.108 40.909 15.27 1.01 0.00 2.74
3553 4085 3.141398 TCAGGCTGTACTGAAGCAAAAG 58.859 45.455 15.27 0.00 44.03 2.27
3560 4092 5.507985 GCTGTACTGAAGCAAAAGGAACAAT 60.508 40.000 3.61 0.00 40.52 2.71
3593 4125 7.922278 ACTGAGGATATTTAAAATACGCGTGTA 59.078 33.333 24.59 11.86 34.45 2.90
3595 4127 7.922278 TGAGGATATTTAAAATACGCGTGTACT 59.078 33.333 24.59 8.53 32.26 2.73
3604 4136 5.450376 AATACGCGTGTACTCTTTTGATG 57.550 39.130 24.59 0.00 32.26 3.07
3629 4161 5.799681 AACATTCTTGGTTGCAAAACTTG 57.200 34.783 0.00 0.00 32.01 3.16
3717 4249 3.157087 AGAAGATTTCACGGTGCCAATT 58.843 40.909 2.51 0.00 0.00 2.32
3718 4250 3.191371 AGAAGATTTCACGGTGCCAATTC 59.809 43.478 2.51 4.38 0.00 2.17
3719 4251 2.513753 AGATTTCACGGTGCCAATTCA 58.486 42.857 2.51 0.00 0.00 2.57
3745 4277 5.538433 CACCAAAAAGAAGATTAGTTCCCCA 59.462 40.000 0.00 0.00 0.00 4.96
3806 4341 6.598525 CACATGCGTATCTACAAACAAGAAA 58.401 36.000 0.00 0.00 0.00 2.52
3811 4346 8.722342 TGCGTATCTACAAACAAGAAATTTTC 57.278 30.769 0.66 0.66 0.00 2.29
3812 4347 8.346300 TGCGTATCTACAAACAAGAAATTTTCA 58.654 29.630 11.53 0.00 0.00 2.69
3813 4348 8.627428 GCGTATCTACAAACAAGAAATTTTCAC 58.373 33.333 11.53 0.00 0.00 3.18
3814 4349 9.878599 CGTATCTACAAACAAGAAATTTTCACT 57.121 29.630 11.53 0.00 0.00 3.41
3846 4381 9.950496 ACATATACAGACAAAGAAGATTCTTGT 57.050 29.630 8.53 8.77 46.22 3.16
3863 4398 9.741647 AGATTCTTGTTCTCAAAATTGAAGAAC 57.258 29.630 19.91 19.91 40.99 3.01
3902 4437 3.564644 GGAATGAGATGAACATGCAGAGG 59.435 47.826 0.00 0.00 0.00 3.69
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
9 10 1.149361 AGCTAGCTCGACTCGACTCG 61.149 60.000 12.68 8.00 34.83 4.18
77 78 3.402628 TTATAGGGCTGGAATTCGAGC 57.597 47.619 28.50 28.50 45.32 5.03
110 111 5.930135 AGCTATTTAGTAACTGGATGGTGG 58.070 41.667 0.00 0.00 0.00 4.61
128 129 5.279708 GGAAGGTGTGCATATCACTAGCTAT 60.280 44.000 5.97 0.00 45.81 2.97
138 139 0.034574 TTGGCGGAAGGTGTGCATAT 60.035 50.000 0.00 0.00 0.00 1.78
279 280 4.778213 TCATCCAGGCTGCTACTATTTT 57.222 40.909 9.56 0.00 0.00 1.82
298 299 3.724478 ACCACCATGTATCCTCTCTTCA 58.276 45.455 0.00 0.00 0.00 3.02
299 300 4.762289 AACCACCATGTATCCTCTCTTC 57.238 45.455 0.00 0.00 0.00 2.87
324 325 4.886579 TCCAGACATCCACGATATGAATG 58.113 43.478 0.00 0.00 0.00 2.67
329 330 4.561530 CGGAAATCCAGACATCCACGATAT 60.562 45.833 0.00 0.00 35.14 1.63
331 332 2.483714 CGGAAATCCAGACATCCACGAT 60.484 50.000 0.00 0.00 35.14 3.73
374 375 5.106078 GGCGTATGTTTTCCCACAAATTAGA 60.106 40.000 0.00 0.00 0.00 2.10
376 377 4.767928 AGGCGTATGTTTTCCCACAAATTA 59.232 37.500 0.00 0.00 0.00 1.40
383 384 0.693622 TCCAGGCGTATGTTTTCCCA 59.306 50.000 0.00 0.00 0.00 4.37
399 400 2.047655 GGTTCACCGATGCGTCCA 60.048 61.111 0.00 0.00 0.00 4.02
415 416 1.484653 TCCAACATGGTACCTCATCGG 59.515 52.381 14.36 8.56 39.03 4.18
421 422 4.079253 GTTTGTCATCCAACATGGTACCT 58.921 43.478 14.36 0.00 39.03 3.08
453 454 2.368439 CATCCATCCAAACCGACATGT 58.632 47.619 0.00 0.00 0.00 3.21
464 465 3.636929 AAACCGCCGCATCCATCCA 62.637 57.895 0.00 0.00 0.00 3.41
483 484 1.131315 GCATCTCCAAAGCGAACCTTC 59.869 52.381 0.00 0.00 31.99 3.46
522 523 3.007635 AGCAAGCCCGTAAAACATCTAC 58.992 45.455 0.00 0.00 0.00 2.59
554 555 7.615582 TCATCACTCCACTTTCAATCATAAC 57.384 36.000 0.00 0.00 0.00 1.89
568 569 2.308722 GGGCCCCTTCATCACTCCA 61.309 63.158 12.23 0.00 0.00 3.86
599 600 1.460839 TTCTCCCCTCCTTCCCCTGA 61.461 60.000 0.00 0.00 0.00 3.86
605 606 4.846168 ACTAAATGTTCTCCCCTCCTTC 57.154 45.455 0.00 0.00 0.00 3.46
645 646 3.623960 TGACTGTGAAGGTTTTACCAACG 59.376 43.478 0.00 0.00 41.95 4.10
656 657 3.005554 CCTATGCTTGTGACTGTGAAGG 58.994 50.000 0.00 0.00 0.00 3.46
667 668 5.163405 ACTGTGACGATAATCCTATGCTTGT 60.163 40.000 0.00 0.00 0.00 3.16
672 673 9.476202 TCATAAAACTGTGACGATAATCCTATG 57.524 33.333 0.00 0.00 0.00 2.23
719 720 3.528597 AGAGATCTTTCGTAGTTGCCC 57.471 47.619 0.00 0.00 0.00 5.36
751 752 5.416013 TCAGAGAGAGAGAGCGAATTGTTAA 59.584 40.000 0.00 0.00 0.00 2.01
767 768 1.404181 CCCGCGTGAAAATCAGAGAGA 60.404 52.381 4.92 0.00 0.00 3.10
768 769 1.002366 CCCGCGTGAAAATCAGAGAG 58.998 55.000 4.92 0.00 0.00 3.20
769 770 0.320374 ACCCGCGTGAAAATCAGAGA 59.680 50.000 4.92 0.00 0.00 3.10
785 786 2.677848 GAAGGAAGGAGCCCACCC 59.322 66.667 0.00 0.00 0.00 4.61
795 796 4.208746 AGACTAGTGATACGGGAAGGAAG 58.791 47.826 0.00 0.00 0.00 3.46
801 802 3.945921 CAGTGAAGACTAGTGATACGGGA 59.054 47.826 0.00 0.00 0.00 5.14
812 813 4.065088 GGCAACATGAACAGTGAAGACTA 58.935 43.478 0.00 0.00 0.00 2.59
821 822 2.288579 ACATTGCAGGCAACATGAACAG 60.289 45.455 9.13 0.00 38.88 3.16
837 838 5.371115 AAGTTGTGACGGGATTAACATTG 57.629 39.130 0.00 0.00 0.00 2.82
838 839 5.533154 TGAAAGTTGTGACGGGATTAACATT 59.467 36.000 0.00 0.00 0.00 2.71
847 848 1.790623 CTACGTGAAAGTTGTGACGGG 59.209 52.381 0.00 0.00 36.14 5.28
849 850 3.734231 ACATCTACGTGAAAGTTGTGACG 59.266 43.478 0.00 0.00 37.82 4.35
852 853 4.684242 TGCTACATCTACGTGAAAGTTGTG 59.316 41.667 0.00 0.00 31.23 3.33
857 858 7.197017 AGAGTAATGCTACATCTACGTGAAAG 58.803 38.462 0.00 0.00 0.00 2.62
861 862 7.111732 CGTAAAGAGTAATGCTACATCTACGTG 59.888 40.741 0.00 0.00 0.00 4.49
886 887 1.070758 CTTCCTCCCATCCACATACCG 59.929 57.143 0.00 0.00 0.00 4.02
916 917 1.139498 TGGTGGATGCCTGAAGGGAA 61.139 55.000 0.00 0.00 39.60 3.97
936 937 5.712004 CATATGTTGGATGCAACTTTGTGA 58.288 37.500 27.36 9.51 36.15 3.58
1003 1004 2.354510 TGTCCATTATAAAGCGCTGCAC 59.645 45.455 12.58 0.00 0.00 4.57
1026 1027 1.736365 GCCCTACCGCTGAGTAGTCC 61.736 65.000 0.00 0.00 38.46 3.85
1046 1047 3.643199 TGGGAGCTATGTATTGTTGCA 57.357 42.857 0.00 0.00 0.00 4.08
1056 1057 6.566079 TTATGGGAAGATATGGGAGCTATG 57.434 41.667 0.00 0.00 0.00 2.23
1057 1058 6.069381 GGTTTATGGGAAGATATGGGAGCTAT 60.069 42.308 0.00 0.00 0.00 2.97
1058 1059 5.250774 GGTTTATGGGAAGATATGGGAGCTA 59.749 44.000 0.00 0.00 0.00 3.32
1059 1060 4.043435 GGTTTATGGGAAGATATGGGAGCT 59.957 45.833 0.00 0.00 0.00 4.09
1064 1065 5.018809 CCATGGGTTTATGGGAAGATATGG 58.981 45.833 2.85 0.00 43.16 2.74
1077 1078 1.515020 GCAATGCGCCATGGGTTTA 59.485 52.632 15.13 0.00 32.94 2.01
1128 1129 4.077184 GATGACGGTGGCGGTGGA 62.077 66.667 0.00 0.00 0.00 4.02
1185 1186 2.159747 GGTGTTTAAGATTGACGACGGC 60.160 50.000 0.00 0.00 0.00 5.68
1188 1189 3.810941 TGGTGGTGTTTAAGATTGACGAC 59.189 43.478 0.00 0.00 0.00 4.34
1189 1190 3.810941 GTGGTGGTGTTTAAGATTGACGA 59.189 43.478 0.00 0.00 0.00 4.20
1196 1197 5.134661 CCTTTAAGGTGGTGGTGTTTAAGA 58.865 41.667 2.20 0.00 0.00 2.10
1233 1234 0.676151 CCTCAAGCAGGTTCAGAGCC 60.676 60.000 0.00 0.00 37.53 4.70
1245 1246 2.125512 ATCACGCGGTCCTCAAGC 60.126 61.111 12.47 0.00 0.00 4.01
1374 1375 3.458163 GGGATCTCGCCGGTGACA 61.458 66.667 15.21 3.99 0.00 3.58
1493 1494 3.932580 GATGACGGCAGCGACACCA 62.933 63.158 0.00 0.00 0.00 4.17
1500 1501 0.737715 AAGACGAAGATGACGGCAGC 60.738 55.000 0.00 0.00 41.61 5.25
1599 1600 1.976474 GATGGCCTTTGGGAACGCA 60.976 57.895 3.32 0.00 33.58 5.24
1676 1677 3.853330 CATCAACGACGCCGGCAG 61.853 66.667 28.98 21.29 40.78 4.85
1677 1678 4.673298 ACATCAACGACGCCGGCA 62.673 61.111 28.98 4.72 40.78 5.69
1684 1685 1.136336 GCCGTTTCTGACATCAACGAC 60.136 52.381 16.83 5.63 44.85 4.34
1728 1729 1.268899 AGACGGTCACCAAAGTAGACG 59.731 52.381 11.27 0.00 33.18 4.18
1740 1741 3.963687 TAGCGCGAGGAGACGGTCA 62.964 63.158 12.10 0.00 40.87 4.02
1742 1743 2.516460 ATAGCGCGAGGAGACGGT 60.516 61.111 12.10 0.00 43.27 4.83
1746 1747 2.622965 CTCAGATAGCGCGAGGAGA 58.377 57.895 12.10 0.00 0.00 3.71
1758 1759 2.418910 CGGCAGGTCGTCCTCAGAT 61.419 63.158 0.00 0.00 43.07 2.90
1761 1762 1.379443 ATACGGCAGGTCGTCCTCA 60.379 57.895 0.73 0.00 43.07 3.86
1803 1804 2.646175 GCCTACGGTGCTCAGGTCA 61.646 63.158 0.00 0.00 0.00 4.02
1818 1819 4.699522 GCGAAGTCCAACCGGCCT 62.700 66.667 0.00 0.00 0.00 5.19
1851 1852 3.585990 GGGTGCGCGATCATTGGG 61.586 66.667 12.10 0.00 0.00 4.12
1883 1884 2.939261 GCGAAGAGTTCCCCGGTGA 61.939 63.158 0.00 0.00 0.00 4.02
1890 1891 2.448705 GCTCAGCGCGAAGAGTTCC 61.449 63.158 23.21 8.64 34.39 3.62
1893 1894 1.137825 GTAGCTCAGCGCGAAGAGT 59.862 57.895 23.21 15.05 45.59 3.24
2026 2027 1.080705 CGGTGAAGGTCTCGGTGAC 60.081 63.158 1.67 1.67 44.63 3.67
2036 2037 2.186903 CGGGGATCACGGTGAAGG 59.813 66.667 15.72 0.00 0.00 3.46
2041 2042 3.075005 CTGGTCGGGGATCACGGT 61.075 66.667 2.09 0.00 0.00 4.83
2081 2082 4.530857 AGCCGCCACGTAGCATCC 62.531 66.667 6.80 0.00 0.00 3.51
2142 2143 2.359850 TGTACGTACCGCGGGAGT 60.360 61.111 31.76 26.09 46.52 3.85
2160 2586 2.181021 GTTGGCTCTGCATGCAGC 59.819 61.111 37.48 28.88 43.31 5.25
2174 2600 0.179181 GTCGACATGCATGGCTGTTG 60.179 55.000 29.31 14.49 32.20 3.33
2177 2603 1.426621 GTGTCGACATGCATGGCTG 59.573 57.895 29.31 21.80 32.20 4.85
2179 2605 2.390599 ACGTGTCGACATGCATGGC 61.391 57.895 32.43 26.62 36.36 4.40
2180 2606 1.291184 ACACGTGTCGACATGCATGG 61.291 55.000 32.43 22.33 36.36 3.66
2181 2607 0.093535 GACACGTGTCGACATGCATG 59.906 55.000 32.43 26.11 36.36 4.06
2182 2608 2.445274 GACACGTGTCGACATGCAT 58.555 52.632 32.43 22.58 36.36 3.96
2198 2624 5.610398 ACAAGGGGAACATCAAATTTTGAC 58.390 37.500 13.80 1.93 43.48 3.18
2208 2634 0.036306 ACGTGGACAAGGGGAACATC 59.964 55.000 0.00 0.00 0.00 3.06
2219 2646 0.181587 ATTTGGGTGACACGTGGACA 59.818 50.000 21.57 16.35 0.00 4.02
2234 2661 5.911421 TCGATAGACACGTGTGAAAATTTG 58.089 37.500 28.82 8.07 42.67 2.32
2252 2679 4.323417 ACAGAGCAAACAAACCATCGATA 58.677 39.130 0.00 0.00 0.00 2.92
2254 2681 2.571212 ACAGAGCAAACAAACCATCGA 58.429 42.857 0.00 0.00 0.00 3.59
2256 2683 5.376854 ACATACAGAGCAAACAAACCATC 57.623 39.130 0.00 0.00 0.00 3.51
2257 2684 5.415701 CCTACATACAGAGCAAACAAACCAT 59.584 40.000 0.00 0.00 0.00 3.55
2258 2685 4.759693 CCTACATACAGAGCAAACAAACCA 59.240 41.667 0.00 0.00 0.00 3.67
2259 2686 4.760204 ACCTACATACAGAGCAAACAAACC 59.240 41.667 0.00 0.00 0.00 3.27
2260 2687 5.941948 ACCTACATACAGAGCAAACAAAC 57.058 39.130 0.00 0.00 0.00 2.93
2262 2689 6.816640 GTCATACCTACATACAGAGCAAACAA 59.183 38.462 0.00 0.00 0.00 2.83
2263 2690 6.154534 AGTCATACCTACATACAGAGCAAACA 59.845 38.462 0.00 0.00 0.00 2.83
2264 2691 6.574350 AGTCATACCTACATACAGAGCAAAC 58.426 40.000 0.00 0.00 0.00 2.93
2269 2696 5.179742 GTCCGAGTCATACCTACATACAGAG 59.820 48.000 0.00 0.00 0.00 3.35
2272 2699 3.811497 CGTCCGAGTCATACCTACATACA 59.189 47.826 0.00 0.00 0.00 2.29
2273 2700 4.060900 TCGTCCGAGTCATACCTACATAC 58.939 47.826 0.00 0.00 0.00 2.39
2275 2702 3.204306 TCGTCCGAGTCATACCTACAT 57.796 47.619 0.00 0.00 0.00 2.29
2300 2727 2.867472 GTCAAACCACCGCATCCG 59.133 61.111 0.00 0.00 0.00 4.18
2326 2753 0.320247 AGACGTGGAAGCAGAAGCAG 60.320 55.000 0.00 0.00 45.49 4.24
2395 2822 3.911989 GCAGGAGCAAATGATGACG 57.088 52.632 0.00 0.00 41.58 4.35
2425 2852 2.529005 CTTCCGAGAAGAGCGCGTCA 62.529 60.000 8.43 0.00 38.18 4.35
2737 3164 1.215423 TCCTCCCTCTCATCATCGTCA 59.785 52.381 0.00 0.00 0.00 4.35
2739 3166 1.698506 GTCCTCCCTCTCATCATCGT 58.301 55.000 0.00 0.00 0.00 3.73
2742 3169 1.480312 CCTCGTCCTCCCTCTCATCAT 60.480 57.143 0.00 0.00 0.00 2.45
2747 3174 2.123640 CCCCTCGTCCTCCCTCTC 60.124 72.222 0.00 0.00 0.00 3.20
2806 3233 2.363018 TCTAGCACGGCCAGCTCT 60.363 61.111 21.74 6.04 42.32 4.09
2818 3245 1.878522 CATGGTGACCGCGTCTAGC 60.879 63.158 4.92 0.27 43.95 3.42
2821 3248 2.994995 TCCATGGTGACCGCGTCT 60.995 61.111 12.58 0.00 33.15 4.18
2908 3343 2.183811 CTCTGAGTGGCGAGCTGG 59.816 66.667 0.00 0.00 0.00 4.85
2918 3353 5.596772 GCTAGGAGATAAAAGTCCTCTGAGT 59.403 44.000 3.66 0.00 42.55 3.41
2954 3389 5.665459 ACTTACCAGTAGCTAAGCAGAATG 58.335 41.667 0.00 0.00 40.87 2.67
2955 3390 5.450688 CGACTTACCAGTAGCTAAGCAGAAT 60.451 44.000 0.00 0.00 31.22 2.40
2959 3394 2.159282 GCGACTTACCAGTAGCTAAGCA 60.159 50.000 0.00 0.00 45.57 3.91
2969 3404 7.730364 ATATGATTTTTAGGCGACTTACCAG 57.270 36.000 0.00 0.00 43.67 4.00
2976 3411 4.909880 GCGGAAATATGATTTTTAGGCGAC 59.090 41.667 0.00 0.00 0.00 5.19
2978 3413 4.854399 TGCGGAAATATGATTTTTAGGCG 58.146 39.130 0.00 0.00 0.00 5.52
2979 3414 6.446318 TCATGCGGAAATATGATTTTTAGGC 58.554 36.000 0.00 0.00 0.00 3.93
2980 3415 7.596248 CCTTCATGCGGAAATATGATTTTTAGG 59.404 37.037 0.00 0.00 34.44 2.69
2982 3417 8.231692 TCCTTCATGCGGAAATATGATTTTTA 57.768 30.769 1.55 0.00 34.44 1.52
2988 3423 3.565482 GCTTCCTTCATGCGGAAATATGA 59.435 43.478 14.62 0.00 39.86 2.15
2989 3424 3.316029 TGCTTCCTTCATGCGGAAATATG 59.684 43.478 14.62 6.87 39.86 1.78
2990 3425 3.554934 TGCTTCCTTCATGCGGAAATAT 58.445 40.909 14.62 0.00 39.86 1.28
2991 3426 2.945008 CTGCTTCCTTCATGCGGAAATA 59.055 45.455 14.62 7.88 39.86 1.40
2992 3427 1.747355 CTGCTTCCTTCATGCGGAAAT 59.253 47.619 14.62 0.00 39.86 2.17
2993 3428 1.167851 CTGCTTCCTTCATGCGGAAA 58.832 50.000 14.62 3.83 39.86 3.13
2994 3429 1.308069 GCTGCTTCCTTCATGCGGAA 61.308 55.000 13.49 13.49 38.18 4.30
2995 3430 1.746615 GCTGCTTCCTTCATGCGGA 60.747 57.895 0.00 0.00 34.07 5.54
2996 3431 2.768492 GGCTGCTTCCTTCATGCGG 61.768 63.158 0.00 0.00 35.10 5.69
2997 3432 2.796651 GGCTGCTTCCTTCATGCG 59.203 61.111 0.00 0.00 0.00 4.73
2998 3433 2.768492 CCGGCTGCTTCCTTCATGC 61.768 63.158 0.00 0.00 0.00 4.06
2999 3434 1.377725 ACCGGCTGCTTCCTTCATG 60.378 57.895 0.00 0.00 0.00 3.07
3000 3435 1.377725 CACCGGCTGCTTCCTTCAT 60.378 57.895 0.00 0.00 0.00 2.57
3001 3436 2.032528 CACCGGCTGCTTCCTTCA 59.967 61.111 0.00 0.00 0.00 3.02
3002 3437 2.747855 CCACCGGCTGCTTCCTTC 60.748 66.667 0.00 0.00 0.00 3.46
3003 3438 4.351054 CCCACCGGCTGCTTCCTT 62.351 66.667 0.00 0.00 0.00 3.36
3005 3440 2.757980 TTTACCCACCGGCTGCTTCC 62.758 60.000 0.00 0.00 0.00 3.46
3006 3441 0.891904 TTTTACCCACCGGCTGCTTC 60.892 55.000 0.00 0.00 0.00 3.86
3007 3442 0.251608 ATTTTACCCACCGGCTGCTT 60.252 50.000 0.00 0.00 0.00 3.91
3008 3443 0.679960 GATTTTACCCACCGGCTGCT 60.680 55.000 0.00 0.00 0.00 4.24
3009 3444 0.679960 AGATTTTACCCACCGGCTGC 60.680 55.000 0.00 0.00 0.00 5.25
3010 3445 2.702592 TAGATTTTACCCACCGGCTG 57.297 50.000 0.00 0.00 0.00 4.85
3011 3446 2.841881 TCTTAGATTTTACCCACCGGCT 59.158 45.455 0.00 0.00 0.00 5.52
3012 3447 3.271055 TCTTAGATTTTACCCACCGGC 57.729 47.619 0.00 0.00 0.00 6.13
3013 3448 4.095932 GCTTTCTTAGATTTTACCCACCGG 59.904 45.833 0.00 0.00 0.00 5.28
3014 3449 4.201783 CGCTTTCTTAGATTTTACCCACCG 60.202 45.833 0.00 0.00 0.00 4.94
3015 3450 4.939439 TCGCTTTCTTAGATTTTACCCACC 59.061 41.667 0.00 0.00 0.00 4.61
3016 3451 6.315393 TGATCGCTTTCTTAGATTTTACCCAC 59.685 38.462 0.00 0.00 0.00 4.61
3017 3452 6.411376 TGATCGCTTTCTTAGATTTTACCCA 58.589 36.000 0.00 0.00 0.00 4.51
3018 3453 6.920569 TGATCGCTTTCTTAGATTTTACCC 57.079 37.500 0.00 0.00 0.00 3.69
3019 3454 6.907748 GCTTGATCGCTTTCTTAGATTTTACC 59.092 38.462 0.00 0.00 0.00 2.85
3020 3455 6.907748 GGCTTGATCGCTTTCTTAGATTTTAC 59.092 38.462 0.00 0.00 0.00 2.01
3021 3456 6.597672 TGGCTTGATCGCTTTCTTAGATTTTA 59.402 34.615 0.00 0.00 0.00 1.52
3022 3457 5.415701 TGGCTTGATCGCTTTCTTAGATTTT 59.584 36.000 0.00 0.00 0.00 1.82
3023 3458 4.943705 TGGCTTGATCGCTTTCTTAGATTT 59.056 37.500 0.00 0.00 0.00 2.17
3024 3459 4.517285 TGGCTTGATCGCTTTCTTAGATT 58.483 39.130 0.00 0.00 0.00 2.40
3025 3460 4.142609 TGGCTTGATCGCTTTCTTAGAT 57.857 40.909 0.00 0.00 0.00 1.98
3026 3461 3.610040 TGGCTTGATCGCTTTCTTAGA 57.390 42.857 0.00 0.00 0.00 2.10
3027 3462 4.333649 TGAATGGCTTGATCGCTTTCTTAG 59.666 41.667 0.00 0.00 0.00 2.18
3028 3463 4.260985 TGAATGGCTTGATCGCTTTCTTA 58.739 39.130 0.00 0.00 0.00 2.10
3029 3464 3.084039 TGAATGGCTTGATCGCTTTCTT 58.916 40.909 0.00 0.00 0.00 2.52
3030 3465 2.715046 TGAATGGCTTGATCGCTTTCT 58.285 42.857 0.00 0.00 0.00 2.52
3031 3466 3.705043 ATGAATGGCTTGATCGCTTTC 57.295 42.857 0.00 0.00 0.00 2.62
3032 3467 4.427312 GAAATGAATGGCTTGATCGCTTT 58.573 39.130 0.00 0.00 0.00 3.51
3033 3468 3.488047 CGAAATGAATGGCTTGATCGCTT 60.488 43.478 0.00 0.00 0.00 4.68
3034 3469 2.032550 CGAAATGAATGGCTTGATCGCT 59.967 45.455 0.00 0.00 0.00 4.93
3035 3470 2.378806 CGAAATGAATGGCTTGATCGC 58.621 47.619 0.00 0.00 0.00 4.58
3036 3471 2.223317 TGCGAAATGAATGGCTTGATCG 60.223 45.455 0.00 0.00 0.00 3.69
3037 3472 3.425577 TGCGAAATGAATGGCTTGATC 57.574 42.857 0.00 0.00 0.00 2.92
3038 3473 4.365723 GAATGCGAAATGAATGGCTTGAT 58.634 39.130 0.00 0.00 0.00 2.57
3039 3474 3.731565 CGAATGCGAAATGAATGGCTTGA 60.732 43.478 0.00 0.00 40.82 3.02
3040 3475 2.532723 CGAATGCGAAATGAATGGCTTG 59.467 45.455 0.00 0.00 40.82 4.01
3041 3476 2.480073 CCGAATGCGAAATGAATGGCTT 60.480 45.455 0.00 0.00 40.82 4.35
3042 3477 1.066002 CCGAATGCGAAATGAATGGCT 59.934 47.619 0.00 0.00 40.82 4.75
3043 3478 1.480205 CCGAATGCGAAATGAATGGC 58.520 50.000 0.00 0.00 40.82 4.40
3044 3479 1.269206 CCCCGAATGCGAAATGAATGG 60.269 52.381 0.00 0.00 40.82 3.16
3045 3480 1.269206 CCCCCGAATGCGAAATGAATG 60.269 52.381 0.00 0.00 40.82 2.67
3046 3481 1.032014 CCCCCGAATGCGAAATGAAT 58.968 50.000 0.00 0.00 40.82 2.57
3047 3482 1.662438 GCCCCCGAATGCGAAATGAA 61.662 55.000 0.00 0.00 40.82 2.57
3048 3483 2.118404 GCCCCCGAATGCGAAATGA 61.118 57.895 0.00 0.00 40.82 2.57
3049 3484 1.666209 AAGCCCCCGAATGCGAAATG 61.666 55.000 0.00 0.00 40.82 2.32
3050 3485 0.106918 TAAGCCCCCGAATGCGAAAT 60.107 50.000 0.00 0.00 40.82 2.17
3051 3486 0.322636 TTAAGCCCCCGAATGCGAAA 60.323 50.000 0.00 0.00 40.82 3.46
3052 3487 0.322636 TTTAAGCCCCCGAATGCGAA 60.323 50.000 0.00 0.00 40.82 4.70
3053 3488 0.322636 TTTTAAGCCCCCGAATGCGA 60.323 50.000 0.00 0.00 40.82 5.10
3054 3489 0.179148 GTTTTAAGCCCCCGAATGCG 60.179 55.000 0.00 0.00 37.24 4.73
3055 3490 0.179148 CGTTTTAAGCCCCCGAATGC 60.179 55.000 0.00 0.00 0.00 3.56
3056 3491 1.455248 TCGTTTTAAGCCCCCGAATG 58.545 50.000 0.00 0.00 0.00 2.67
3057 3492 2.203470 TTCGTTTTAAGCCCCCGAAT 57.797 45.000 0.00 0.00 33.13 3.34
3058 3493 2.086094 GATTCGTTTTAAGCCCCCGAA 58.914 47.619 0.00 0.00 41.16 4.30
3059 3494 1.741528 GATTCGTTTTAAGCCCCCGA 58.258 50.000 0.00 0.00 0.00 5.14
3060 3495 0.375803 CGATTCGTTTTAAGCCCCCG 59.624 55.000 0.00 0.00 0.00 5.73
3061 3496 1.669265 CTCGATTCGTTTTAAGCCCCC 59.331 52.381 5.89 0.00 0.00 5.40
3062 3497 2.353323 ACTCGATTCGTTTTAAGCCCC 58.647 47.619 5.89 0.00 0.00 5.80
3063 3498 4.201753 GGTTACTCGATTCGTTTTAAGCCC 60.202 45.833 5.89 0.00 0.00 5.19
3064 3499 4.628766 AGGTTACTCGATTCGTTTTAAGCC 59.371 41.667 5.89 6.72 0.00 4.35
3065 3500 5.774878 AGGTTACTCGATTCGTTTTAAGC 57.225 39.130 5.89 10.79 0.00 3.09
3089 3524 9.125026 AGTTGTGAGTTGACTGAGAATATTTTT 57.875 29.630 0.00 0.00 0.00 1.94
3090 3525 8.682936 AGTTGTGAGTTGACTGAGAATATTTT 57.317 30.769 0.00 0.00 0.00 1.82
3091 3526 9.429359 CTAGTTGTGAGTTGACTGAGAATATTT 57.571 33.333 0.00 0.00 0.00 1.40
3092 3527 8.589338 ACTAGTTGTGAGTTGACTGAGAATATT 58.411 33.333 0.00 0.00 0.00 1.28
3093 3528 8.128322 ACTAGTTGTGAGTTGACTGAGAATAT 57.872 34.615 0.00 0.00 0.00 1.28
3094 3529 7.230712 TGACTAGTTGTGAGTTGACTGAGAATA 59.769 37.037 0.00 0.00 0.00 1.75
3095 3530 6.040955 TGACTAGTTGTGAGTTGACTGAGAAT 59.959 38.462 0.00 0.00 0.00 2.40
3096 3531 5.359860 TGACTAGTTGTGAGTTGACTGAGAA 59.640 40.000 0.00 0.00 0.00 2.87
3097 3532 4.887655 TGACTAGTTGTGAGTTGACTGAGA 59.112 41.667 0.00 0.00 0.00 3.27
3098 3533 5.188327 TGACTAGTTGTGAGTTGACTGAG 57.812 43.478 0.00 0.00 0.00 3.35
3099 3534 5.592104 TTGACTAGTTGTGAGTTGACTGA 57.408 39.130 0.00 0.00 0.00 3.41
3100 3535 5.406780 GGATTGACTAGTTGTGAGTTGACTG 59.593 44.000 0.00 0.00 0.00 3.51
3101 3536 5.511545 GGGATTGACTAGTTGTGAGTTGACT 60.512 44.000 0.00 0.00 0.00 3.41
3102 3537 4.691216 GGGATTGACTAGTTGTGAGTTGAC 59.309 45.833 0.00 0.00 0.00 3.18
3103 3538 4.346709 TGGGATTGACTAGTTGTGAGTTGA 59.653 41.667 0.00 0.00 0.00 3.18
3104 3539 4.641396 TGGGATTGACTAGTTGTGAGTTG 58.359 43.478 0.00 0.00 0.00 3.16
3105 3540 4.974645 TGGGATTGACTAGTTGTGAGTT 57.025 40.909 0.00 0.00 0.00 3.01
3106 3541 4.974645 TTGGGATTGACTAGTTGTGAGT 57.025 40.909 0.00 0.00 0.00 3.41
3107 3542 6.207417 ACAAATTGGGATTGACTAGTTGTGAG 59.793 38.462 0.00 0.00 0.00 3.51
3108 3543 6.016360 CACAAATTGGGATTGACTAGTTGTGA 60.016 38.462 12.28 0.00 37.63 3.58
3109 3544 6.151691 CACAAATTGGGATTGACTAGTTGTG 58.848 40.000 0.00 0.00 0.00 3.33
3110 3545 5.833131 ACACAAATTGGGATTGACTAGTTGT 59.167 36.000 0.65 0.00 0.00 3.32
3111 3546 6.331369 ACACAAATTGGGATTGACTAGTTG 57.669 37.500 0.65 0.00 0.00 3.16
3112 3547 6.777580 AGAACACAAATTGGGATTGACTAGTT 59.222 34.615 0.65 0.00 0.00 2.24
3113 3548 6.306987 AGAACACAAATTGGGATTGACTAGT 58.693 36.000 0.65 0.00 0.00 2.57
3114 3549 6.824305 AGAACACAAATTGGGATTGACTAG 57.176 37.500 0.65 0.00 0.00 2.57
3115 3550 6.775142 TCAAGAACACAAATTGGGATTGACTA 59.225 34.615 0.65 0.00 0.00 2.59
3116 3551 5.598005 TCAAGAACACAAATTGGGATTGACT 59.402 36.000 0.65 0.00 0.00 3.41
3117 3552 5.841810 TCAAGAACACAAATTGGGATTGAC 58.158 37.500 0.65 0.00 0.00 3.18
3118 3553 6.477053 TTCAAGAACACAAATTGGGATTGA 57.523 33.333 0.65 6.70 0.00 2.57
3119 3554 7.733402 AATTCAAGAACACAAATTGGGATTG 57.267 32.000 0.65 4.39 0.00 2.67
3123 3558 8.872845 GCTAATAATTCAAGAACACAAATTGGG 58.127 33.333 0.00 0.00 0.00 4.12
3124 3559 9.643693 AGCTAATAATTCAAGAACACAAATTGG 57.356 29.630 0.00 0.00 0.00 3.16
3163 3598 8.518702 GGCTAAGAAGTTCAGATTTGATTTCTT 58.481 33.333 20.38 20.38 43.09 2.52
3164 3599 7.887495 AGGCTAAGAAGTTCAGATTTGATTTCT 59.113 33.333 5.50 7.37 38.34 2.52
3165 3600 8.049655 AGGCTAAGAAGTTCAGATTTGATTTC 57.950 34.615 5.50 0.00 32.27 2.17
3166 3601 9.692325 ATAGGCTAAGAAGTTCAGATTTGATTT 57.308 29.630 5.50 0.00 32.27 2.17
3167 3602 9.118300 CATAGGCTAAGAAGTTCAGATTTGATT 57.882 33.333 5.50 0.00 32.27 2.57
3168 3603 7.228308 GCATAGGCTAAGAAGTTCAGATTTGAT 59.772 37.037 5.50 0.00 36.96 2.57
3169 3604 6.540189 GCATAGGCTAAGAAGTTCAGATTTGA 59.460 38.462 5.50 0.00 36.96 2.69
3170 3605 6.317140 TGCATAGGCTAAGAAGTTCAGATTTG 59.683 38.462 5.50 0.00 41.91 2.32
3171 3606 6.418101 TGCATAGGCTAAGAAGTTCAGATTT 58.582 36.000 5.50 0.00 41.91 2.17
3172 3607 5.994250 TGCATAGGCTAAGAAGTTCAGATT 58.006 37.500 5.50 0.00 41.91 2.40
3173 3608 5.620738 TGCATAGGCTAAGAAGTTCAGAT 57.379 39.130 5.50 0.00 41.91 2.90
3174 3609 5.420725 TTGCATAGGCTAAGAAGTTCAGA 57.579 39.130 5.50 0.00 41.91 3.27
3175 3610 5.008415 CCATTGCATAGGCTAAGAAGTTCAG 59.992 44.000 5.50 0.00 41.91 3.02
3176 3611 4.883585 CCATTGCATAGGCTAAGAAGTTCA 59.116 41.667 5.50 0.00 41.91 3.18
3177 3612 4.276926 CCCATTGCATAGGCTAAGAAGTTC 59.723 45.833 0.00 0.00 41.91 3.01
3178 3613 4.210331 CCCATTGCATAGGCTAAGAAGTT 58.790 43.478 0.00 0.00 41.91 2.66
3179 3614 3.435601 CCCCATTGCATAGGCTAAGAAGT 60.436 47.826 0.00 0.00 41.91 3.01
3180 3615 3.152341 CCCCATTGCATAGGCTAAGAAG 58.848 50.000 0.00 0.00 41.91 2.85
3181 3616 2.158475 CCCCCATTGCATAGGCTAAGAA 60.158 50.000 0.00 0.00 41.91 2.52
3182 3617 1.425066 CCCCCATTGCATAGGCTAAGA 59.575 52.381 0.00 0.00 41.91 2.10
3183 3618 1.915141 CCCCCATTGCATAGGCTAAG 58.085 55.000 0.00 0.00 41.91 2.18
3199 3634 3.515901 CTGATCCTATACTAGTTGCCCCC 59.484 52.174 0.00 0.00 0.00 5.40
3200 3635 3.055747 GCTGATCCTATACTAGTTGCCCC 60.056 52.174 0.00 0.00 0.00 5.80
3201 3636 3.578716 TGCTGATCCTATACTAGTTGCCC 59.421 47.826 0.00 0.00 0.00 5.36
3202 3637 4.561105 GTGCTGATCCTATACTAGTTGCC 58.439 47.826 0.00 0.00 0.00 4.52
3203 3638 4.282195 AGGTGCTGATCCTATACTAGTTGC 59.718 45.833 0.00 0.00 33.04 4.17
3204 3639 5.536538 TGAGGTGCTGATCCTATACTAGTTG 59.463 44.000 0.00 0.00 35.20 3.16
3226 3661 1.211743 GATCGCATGATCGCACTTGA 58.788 50.000 0.00 0.00 41.51 3.02
3227 3662 3.723347 GATCGCATGATCGCACTTG 57.277 52.632 0.00 0.00 41.51 3.16
3255 3690 4.987963 TGAGATATGCATCCAATGGTCT 57.012 40.909 0.19 0.00 0.00 3.85
3269 3704 5.012893 TGCTCGATCTGTACCATGAGATAT 58.987 41.667 0.00 0.00 0.00 1.63
3275 3710 3.256879 ACCTATGCTCGATCTGTACCATG 59.743 47.826 0.00 0.00 0.00 3.66
3288 3723 2.107204 ACCATCAATCCCACCTATGCTC 59.893 50.000 0.00 0.00 0.00 4.26
3364 3799 6.810888 ATCAATTTCAAACAACGTCAAGTG 57.189 33.333 0.00 0.00 0.00 3.16
3370 3805 6.627395 TGGTCTATCAATTTCAAACAACGT 57.373 33.333 0.00 0.00 0.00 3.99
3383 3818 9.085645 TCTGTAGAAACTTACTTGGTCTATCAA 57.914 33.333 0.00 0.00 0.00 2.57
3486 3921 9.857656 AGACATGATGGTTTTGTAGATTCATAT 57.142 29.630 0.00 0.00 0.00 1.78
3487 3922 9.685276 AAGACATGATGGTTTTGTAGATTCATA 57.315 29.630 0.00 0.00 0.00 2.15
3488 3923 8.585471 AAGACATGATGGTTTTGTAGATTCAT 57.415 30.769 0.00 0.00 0.00 2.57
3489 3924 8.408043 AAAGACATGATGGTTTTGTAGATTCA 57.592 30.769 0.00 0.00 0.00 2.57
3536 3971 3.315191 TGTTCCTTTTGCTTCAGTACAGC 59.685 43.478 0.00 0.00 37.82 4.40
3538 3973 7.575414 TTATTGTTCCTTTTGCTTCAGTACA 57.425 32.000 0.00 0.00 0.00 2.90
3539 3974 8.865590 TTTTATTGTTCCTTTTGCTTCAGTAC 57.134 30.769 0.00 0.00 0.00 2.73
3569 4101 7.922278 AGTACACGCGTATTTTAAATATCCTCA 59.078 33.333 13.44 0.00 0.00 3.86
3570 4102 8.290663 AGTACACGCGTATTTTAAATATCCTC 57.709 34.615 13.44 0.00 0.00 3.71
3586 4118 2.333926 TCCATCAAAAGAGTACACGCG 58.666 47.619 3.53 3.53 0.00 6.01
3588 4120 5.666969 TGTTTCCATCAAAAGAGTACACG 57.333 39.130 0.00 0.00 0.00 4.49
3593 4125 6.324770 ACCAAGAATGTTTCCATCAAAAGAGT 59.675 34.615 0.00 0.00 0.00 3.24
3595 4127 6.729690 ACCAAGAATGTTTCCATCAAAAGA 57.270 33.333 0.00 0.00 0.00 2.52
3604 4136 4.875536 AGTTTTGCAACCAAGAATGTTTCC 59.124 37.500 0.00 0.00 32.70 3.13
3652 4184 6.201234 GGAACTGTGTAGAGAGAACTGTTTTC 59.799 42.308 3.05 3.05 36.49 2.29
3717 4249 7.176690 GGGAACTAATCTTCTTTTTGGTGATGA 59.823 37.037 0.00 0.00 0.00 2.92
3718 4250 7.315890 GGGAACTAATCTTCTTTTTGGTGATG 58.684 38.462 0.00 0.00 0.00 3.07
3719 4251 6.437477 GGGGAACTAATCTTCTTTTTGGTGAT 59.563 38.462 0.00 0.00 0.00 3.06
3768 4303 2.664568 CGCATGTGCTCCTGAATTTTTG 59.335 45.455 3.25 0.00 39.32 2.44
3820 4355 9.950496 ACAAGAATCTTCTTTGTCTGTATATGT 57.050 29.630 2.45 0.00 44.70 2.29
3824 4359 9.213799 GAGAACAAGAATCTTCTTTGTCTGTAT 57.786 33.333 14.93 1.67 44.70 2.29
3825 4360 8.204160 TGAGAACAAGAATCTTCTTTGTCTGTA 58.796 33.333 14.93 6.06 44.70 2.74
3826 4361 7.050377 TGAGAACAAGAATCTTCTTTGTCTGT 58.950 34.615 14.93 4.70 44.70 3.41
3827 4362 7.488187 TGAGAACAAGAATCTTCTTTGTCTG 57.512 36.000 14.93 4.20 44.70 3.51
3828 4363 8.511604 TTTGAGAACAAGAATCTTCTTTGTCT 57.488 30.769 11.82 11.82 44.70 3.41
3829 4364 9.741647 ATTTTGAGAACAAGAATCTTCTTTGTC 57.258 29.630 2.45 0.00 44.70 3.18
3834 4369 9.962783 CTTCAATTTTGAGAACAAGAATCTTCT 57.037 29.630 0.00 0.00 38.61 2.85
3835 4370 9.956720 TCTTCAATTTTGAGAACAAGAATCTTC 57.043 29.630 0.00 0.00 38.61 2.87
3837 4372 9.741647 GTTCTTCAATTTTGAGAACAAGAATCT 57.258 29.630 19.42 0.00 40.69 2.40
3838 4373 8.685536 CGTTCTTCAATTTTGAGAACAAGAATC 58.314 33.333 21.63 11.18 40.83 2.52
3839 4374 7.649306 CCGTTCTTCAATTTTGAGAACAAGAAT 59.351 33.333 21.63 0.00 40.83 2.40
3840 4375 6.972328 CCGTTCTTCAATTTTGAGAACAAGAA 59.028 34.615 21.63 13.63 40.83 2.52
3841 4376 6.317642 TCCGTTCTTCAATTTTGAGAACAAGA 59.682 34.615 21.63 17.54 40.83 3.02
3842 4377 6.494842 TCCGTTCTTCAATTTTGAGAACAAG 58.505 36.000 21.63 16.43 40.83 3.16
3843 4378 6.443934 TCCGTTCTTCAATTTTGAGAACAA 57.556 33.333 21.63 13.52 40.83 2.83
3844 4379 5.008613 CCTCCGTTCTTCAATTTTGAGAACA 59.991 40.000 21.63 11.52 40.83 3.18
3845 4380 5.452777 CCTCCGTTCTTCAATTTTGAGAAC 58.547 41.667 16.87 16.87 39.35 3.01
3846 4381 4.518970 CCCTCCGTTCTTCAATTTTGAGAA 59.481 41.667 0.00 0.00 38.61 2.87
3863 4398 2.124570 CACATCAAGCCCCCTCCG 60.125 66.667 0.00 0.00 0.00 4.63
3917 4452 2.583593 GCGTCTGATCCGTCTGCC 60.584 66.667 0.00 0.00 0.00 4.85
3921 4456 1.586564 CTTCGGCGTCTGATCCGTC 60.587 63.158 6.85 2.37 45.44 4.79
3924 4459 2.893398 ACCTTCGGCGTCTGATCC 59.107 61.111 6.85 0.00 0.00 3.36


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.