Multiple sequence alignment - TraesCS2D01G012300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2D01G012300 chr2D 100.000 2609 0 0 1 2609 5878014 5875406 0.000000e+00 4819.0
1 TraesCS2D01G012300 chr2D 82.784 819 95 27 225 1039 5886046 5885270 0.000000e+00 689.0
2 TraesCS2D01G012300 chr2D 83.803 142 17 5 1652 1792 5883484 5883348 2.110000e-26 130.0
3 TraesCS2D01G012300 chr2A 86.641 1280 89 32 80 1328 4323433 4322205 0.000000e+00 1341.0
4 TraesCS2D01G012300 chr2A 83.062 307 24 9 1393 1694 4322212 4321929 1.200000e-63 254.0
5 TraesCS2D01G012300 chr2A 88.626 211 15 4 2172 2377 4321631 4321425 5.580000e-62 248.0
6 TraesCS2D01G012300 chr2B 85.599 1111 77 28 721 1801 5603339 5604396 0.000000e+00 1088.0
7 TraesCS2D01G012300 chr2B 84.605 734 80 20 1 716 5602584 5603302 0.000000e+00 699.0
8 TraesCS2D01G012300 chr2B 91.416 233 12 3 1947 2171 5604419 5604651 1.950000e-81 313.0
9 TraesCS2D01G012300 chr2B 92.308 65 5 0 2370 2434 5605051 5605115 2.760000e-15 93.5
10 TraesCS2D01G012300 chr2B 88.889 72 4 1 2168 2235 5604758 5604829 4.630000e-13 86.1
11 TraesCS2D01G012300 chr6B 91.883 308 18 4 1867 2171 645340137 645339834 8.630000e-115 424.0
12 TraesCS2D01G012300 chr6B 89.404 151 13 2 1651 1801 645340282 645340135 1.230000e-43 187.0
13 TraesCS2D01G012300 chr6B 93.814 97 5 1 2171 2267 645339727 645339632 7.530000e-31 145.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2D01G012300 chr2D 5875406 5878014 2608 True 4819.000000 4819 100.000000 1 2609 1 chr2D.!!$R1 2608
1 TraesCS2D01G012300 chr2D 5883348 5886046 2698 True 409.500000 689 83.293500 225 1792 2 chr2D.!!$R2 1567
2 TraesCS2D01G012300 chr2A 4321425 4323433 2008 True 614.333333 1341 86.109667 80 2377 3 chr2A.!!$R1 2297
3 TraesCS2D01G012300 chr2B 5602584 5605115 2531 False 455.920000 1088 88.563400 1 2434 5 chr2B.!!$F1 2433
4 TraesCS2D01G012300 chr6B 645339632 645340282 650 True 252.000000 424 91.700333 1651 2267 3 chr6B.!!$R1 616

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
651 683 0.597118 GAGTATGAGCAGAGCGCCAG 60.597 60.0 2.29 0.0 44.04 4.85 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2516 4193 0.035915 GGGGCTTGGTCTTCACTCTC 60.036 60.0 0.0 0.0 0.0 3.2 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
30 31 4.445453 ACTCTCATTGCGCATCAAGATAA 58.555 39.130 12.75 0.00 38.22 1.75
40 41 8.510132 TTGCGCATCAAGATAATATCAAATTG 57.490 30.769 12.75 0.00 0.00 2.32
41 42 7.873910 TGCGCATCAAGATAATATCAAATTGA 58.126 30.769 5.66 0.00 0.00 2.57
75 76 6.936374 GCATGTGCACAATTATGGAAATTAC 58.064 36.000 25.72 0.00 41.59 1.89
100 101 7.063544 ACTCTTTGTCGCATTTATCTACTGTTC 59.936 37.037 0.00 0.00 0.00 3.18
104 108 7.290857 TGTCGCATTTATCTACTGTTCTTTC 57.709 36.000 0.00 0.00 0.00 2.62
171 176 8.270080 TGTCAATACAGAAAACAGTACAAACA 57.730 30.769 0.00 0.00 0.00 2.83
206 233 9.927668 AAGAATATATTTTTAAATCGGCCATGG 57.072 29.630 7.63 7.63 0.00 3.66
218 245 2.825836 CCATGGCACCCGAGCTTC 60.826 66.667 0.00 0.00 34.17 3.86
220 247 3.329889 ATGGCACCCGAGCTTCCA 61.330 61.111 0.00 0.00 34.17 3.53
223 250 2.045926 GCACCCGAGCTTCCATGT 60.046 61.111 0.00 0.00 0.00 3.21
246 273 4.338012 TCATCCACACGAGACTTACCTAA 58.662 43.478 0.00 0.00 0.00 2.69
256 283 7.813627 ACACGAGACTTACCTAAGAATTTCTTC 59.186 37.037 14.75 0.00 37.89 2.87
441 472 9.937175 GTAAGAAACTAAGGTATCAATTCATGC 57.063 33.333 0.00 0.00 0.00 4.06
498 530 2.198827 TGTGTCCCCAACATTGCTAG 57.801 50.000 0.00 0.00 40.80 3.42
604 636 9.685276 ATAGTTCAAATGAATCCATGACACTAA 57.315 29.630 0.00 0.00 36.33 2.24
631 663 9.458374 ACATTTTAAACGATTCAACAAAGGTAG 57.542 29.630 0.00 0.00 0.00 3.18
635 667 4.618920 ACGATTCAACAAAGGTAGGAGT 57.381 40.909 0.00 0.00 0.00 3.85
637 669 6.295719 ACGATTCAACAAAGGTAGGAGTAT 57.704 37.500 0.00 0.00 0.00 2.12
638 670 6.106673 ACGATTCAACAAAGGTAGGAGTATG 58.893 40.000 0.00 0.00 0.00 2.39
639 671 6.070995 ACGATTCAACAAAGGTAGGAGTATGA 60.071 38.462 0.00 0.00 0.00 2.15
640 672 6.477033 CGATTCAACAAAGGTAGGAGTATGAG 59.523 42.308 0.00 0.00 0.00 2.90
641 673 5.086104 TCAACAAAGGTAGGAGTATGAGC 57.914 43.478 0.00 0.00 0.00 4.26
643 675 4.744795 ACAAAGGTAGGAGTATGAGCAG 57.255 45.455 0.00 0.00 0.00 4.24
645 677 4.404073 ACAAAGGTAGGAGTATGAGCAGAG 59.596 45.833 0.00 0.00 0.00 3.35
647 679 1.268352 GGTAGGAGTATGAGCAGAGCG 59.732 57.143 0.00 0.00 0.00 5.03
648 680 0.955178 TAGGAGTATGAGCAGAGCGC 59.045 55.000 0.00 0.00 42.91 5.92
649 681 1.300542 GGAGTATGAGCAGAGCGCC 60.301 63.158 2.29 0.00 44.04 6.53
650 682 1.439228 GAGTATGAGCAGAGCGCCA 59.561 57.895 2.29 0.00 44.04 5.69
651 683 0.597118 GAGTATGAGCAGAGCGCCAG 60.597 60.000 2.29 0.00 44.04 4.85
652 684 1.039785 AGTATGAGCAGAGCGCCAGA 61.040 55.000 2.29 0.00 44.04 3.86
653 685 0.597118 GTATGAGCAGAGCGCCAGAG 60.597 60.000 2.29 0.00 44.04 3.35
654 686 2.360949 TATGAGCAGAGCGCCAGAGC 62.361 60.000 2.29 3.27 44.04 4.09
658 690 4.383861 CAGAGCGCCAGAGCCACA 62.384 66.667 2.29 0.00 38.01 4.17
662 694 1.432270 GAGCGCCAGAGCCACAATAC 61.432 60.000 2.29 0.00 38.01 1.89
668 700 2.095372 GCCAGAGCCACAATACGTTTAC 59.905 50.000 0.00 0.00 0.00 2.01
671 703 1.727880 GAGCCACAATACGTTTACGCA 59.272 47.619 0.00 0.00 44.43 5.24
802 873 2.417243 GCCAACGGAAAAAGATGATGGG 60.417 50.000 0.00 0.00 0.00 4.00
818 893 1.749258 GGGTGAGTCGGCCCATTTC 60.749 63.158 15.45 0.00 44.23 2.17
819 894 1.002624 GGTGAGTCGGCCCATTTCA 60.003 57.895 0.00 0.00 0.00 2.69
985 1082 1.234821 AGAGATCGAGAAGCTAGGCG 58.765 55.000 0.00 0.00 0.00 5.52
986 1083 1.202710 AGAGATCGAGAAGCTAGGCGA 60.203 52.381 7.10 7.10 37.17 5.54
1229 2568 4.517703 CTCCGACGACGACGCCTC 62.518 72.222 14.09 0.00 43.96 4.70
1253 2592 2.844839 GGACGAGGAGGATGGGGG 60.845 72.222 0.00 0.00 0.00 5.40
1294 2633 1.008767 GCCGTCGACGATAAGGAGG 60.009 63.158 37.65 19.51 43.02 4.30
1295 2634 1.442526 GCCGTCGACGATAAGGAGGA 61.443 60.000 37.65 0.00 43.02 3.71
1296 2635 0.587285 CCGTCGACGATAAGGAGGAG 59.413 60.000 37.65 13.95 43.02 3.69
1297 2636 0.587285 CGTCGACGATAAGGAGGAGG 59.413 60.000 33.35 0.00 43.02 4.30
1298 2637 1.809271 CGTCGACGATAAGGAGGAGGA 60.809 57.143 33.35 0.00 43.02 3.71
1299 2638 1.874872 GTCGACGATAAGGAGGAGGAG 59.125 57.143 0.00 0.00 0.00 3.69
1301 2640 1.202782 CGACGATAAGGAGGAGGAGGA 60.203 57.143 0.00 0.00 0.00 3.71
1302 2641 2.510613 GACGATAAGGAGGAGGAGGAG 58.489 57.143 0.00 0.00 0.00 3.69
1303 2642 1.146152 ACGATAAGGAGGAGGAGGAGG 59.854 57.143 0.00 0.00 0.00 4.30
1304 2643 1.425831 CGATAAGGAGGAGGAGGAGGA 59.574 57.143 0.00 0.00 0.00 3.71
1307 2646 0.556380 AAGGAGGAGGAGGAGGAGGA 60.556 60.000 0.00 0.00 0.00 3.71
1308 2647 0.998945 AGGAGGAGGAGGAGGAGGAG 60.999 65.000 0.00 0.00 0.00 3.69
1309 2648 1.293683 GGAGGAGGAGGAGGAGGAGT 61.294 65.000 0.00 0.00 0.00 3.85
1310 2649 0.185175 GAGGAGGAGGAGGAGGAGTC 59.815 65.000 0.00 0.00 0.00 3.36
1360 2699 2.182030 GCAAGTCGGAGGAGGACG 59.818 66.667 0.00 0.00 39.38 4.79
1361 2700 2.341101 GCAAGTCGGAGGAGGACGA 61.341 63.158 0.00 0.00 39.38 4.20
1365 2707 1.820481 GTCGGAGGAGGACGAGGAG 60.820 68.421 0.00 0.00 40.09 3.69
1377 2719 2.750637 GAGGAGTCCGGCGAGTCA 60.751 66.667 9.30 0.00 39.84 3.41
1380 2722 2.766400 GGAGTCCGGCGAGTCAGAG 61.766 68.421 9.30 0.00 39.84 3.35
1381 2723 2.752238 AGTCCGGCGAGTCAGAGG 60.752 66.667 9.30 0.00 0.00 3.69
1382 2724 2.750637 GTCCGGCGAGTCAGAGGA 60.751 66.667 9.30 0.00 0.00 3.71
1383 2725 2.438614 TCCGGCGAGTCAGAGGAG 60.439 66.667 9.30 0.00 0.00 3.69
1384 2726 3.522731 CCGGCGAGTCAGAGGAGG 61.523 72.222 9.30 0.00 0.00 4.30
1385 2727 2.438614 CGGCGAGTCAGAGGAGGA 60.439 66.667 0.00 0.00 0.00 3.71
1386 2728 2.766400 CGGCGAGTCAGAGGAGGAC 61.766 68.421 0.00 0.00 35.50 3.85
1387 2729 2.766400 GGCGAGTCAGAGGAGGACG 61.766 68.421 0.00 0.00 40.20 4.79
1388 2730 1.745864 GCGAGTCAGAGGAGGACGA 60.746 63.158 0.00 0.00 40.20 4.20
1389 2731 1.711060 GCGAGTCAGAGGAGGACGAG 61.711 65.000 0.00 0.00 40.20 4.18
1390 2732 1.092921 CGAGTCAGAGGAGGACGAGG 61.093 65.000 0.00 0.00 40.20 4.63
1401 2743 0.623911 AGGACGAGGAGGAGGAGGTA 60.624 60.000 0.00 0.00 0.00 3.08
1467 2809 2.821810 GCGGCTTCTGCTCCTTCC 60.822 66.667 0.00 0.00 39.59 3.46
1473 2815 0.393537 CTTCTGCTCCTTCCGCCAAT 60.394 55.000 0.00 0.00 0.00 3.16
1626 2968 3.760684 GCTGATGGTCCACTTCTTTGATT 59.239 43.478 0.00 0.00 0.00 2.57
1627 2969 4.943705 GCTGATGGTCCACTTCTTTGATTA 59.056 41.667 0.00 0.00 0.00 1.75
1628 2970 5.591877 GCTGATGGTCCACTTCTTTGATTAT 59.408 40.000 0.00 0.00 0.00 1.28
1629 2971 6.459298 GCTGATGGTCCACTTCTTTGATTATG 60.459 42.308 0.00 0.00 0.00 1.90
1631 2973 6.375174 TGATGGTCCACTTCTTTGATTATGTG 59.625 38.462 0.00 0.00 0.00 3.21
1640 2997 6.484643 ACTTCTTTGATTATGTGCATAGCGAT 59.515 34.615 0.00 0.00 0.00 4.58
1643 3000 6.482973 TCTTTGATTATGTGCATAGCGATTGA 59.517 34.615 0.00 0.00 0.00 2.57
1694 3056 4.431809 TGTGTTTGTTGAAATGCTGGAAG 58.568 39.130 0.00 0.00 0.00 3.46
1733 3095 8.095792 CAGTGCTCCTATATCTGAATCAAATCT 58.904 37.037 0.00 0.00 0.00 2.40
1738 3100 8.060931 TCCTATATCTGAATCAAATCTCTCCG 57.939 38.462 0.00 0.00 0.00 4.63
1747 3109 7.282585 TGAATCAAATCTCTCCGGAAACATAT 58.717 34.615 5.23 0.00 0.00 1.78
1771 3133 5.453866 ACTAGTCCCTGTACTGTACTGAT 57.546 43.478 21.80 10.16 0.00 2.90
1826 3188 3.518634 TTTTGGTCAGTTGAAGTTGCC 57.481 42.857 0.00 0.00 0.00 4.52
1827 3189 2.136298 TTGGTCAGTTGAAGTTGCCA 57.864 45.000 0.00 0.00 0.00 4.92
1828 3190 2.363306 TGGTCAGTTGAAGTTGCCAT 57.637 45.000 0.00 0.00 0.00 4.40
1829 3191 3.500448 TGGTCAGTTGAAGTTGCCATA 57.500 42.857 0.00 0.00 0.00 2.74
1830 3192 4.032960 TGGTCAGTTGAAGTTGCCATAT 57.967 40.909 0.00 0.00 0.00 1.78
1831 3193 5.172687 TGGTCAGTTGAAGTTGCCATATA 57.827 39.130 0.00 0.00 0.00 0.86
1832 3194 5.565509 TGGTCAGTTGAAGTTGCCATATAA 58.434 37.500 0.00 0.00 0.00 0.98
1833 3195 6.007076 TGGTCAGTTGAAGTTGCCATATAAA 58.993 36.000 0.00 0.00 0.00 1.40
1834 3196 6.663093 TGGTCAGTTGAAGTTGCCATATAAAT 59.337 34.615 0.00 0.00 0.00 1.40
1835 3197 7.178274 TGGTCAGTTGAAGTTGCCATATAAATT 59.822 33.333 0.00 0.00 0.00 1.82
1836 3198 7.702348 GGTCAGTTGAAGTTGCCATATAAATTC 59.298 37.037 0.00 0.00 33.95 2.17
1837 3199 8.243426 GTCAGTTGAAGTTGCCATATAAATTCA 58.757 33.333 0.00 0.00 39.45 2.57
1838 3200 8.801299 TCAGTTGAAGTTGCCATATAAATTCAA 58.199 29.630 7.78 7.78 44.64 2.69
1839 3201 9.421806 CAGTTGAAGTTGCCATATAAATTCAAA 57.578 29.630 11.75 0.00 46.69 2.69
1859 3221 8.455903 TTCAAATGAATTCTCAGTCTGTTTCT 57.544 30.769 7.05 0.00 34.23 2.52
1860 3222 8.455903 TCAAATGAATTCTCAGTCTGTTTCTT 57.544 30.769 7.05 0.00 34.23 2.52
1861 3223 8.347771 TCAAATGAATTCTCAGTCTGTTTCTTG 58.652 33.333 7.05 2.87 34.23 3.02
1862 3224 7.814264 AATGAATTCTCAGTCTGTTTCTTGT 57.186 32.000 7.05 0.00 34.23 3.16
1863 3225 7.814264 ATGAATTCTCAGTCTGTTTCTTGTT 57.186 32.000 7.05 0.00 34.23 2.83
1864 3226 7.019774 TGAATTCTCAGTCTGTTTCTTGTTG 57.980 36.000 7.05 0.00 0.00 3.33
1865 3227 6.038603 TGAATTCTCAGTCTGTTTCTTGTTGG 59.961 38.462 7.05 0.00 0.00 3.77
1866 3228 4.487714 TCTCAGTCTGTTTCTTGTTGGT 57.512 40.909 0.00 0.00 0.00 3.67
1867 3229 5.607939 TCTCAGTCTGTTTCTTGTTGGTA 57.392 39.130 0.00 0.00 0.00 3.25
1868 3230 5.357257 TCTCAGTCTGTTTCTTGTTGGTAC 58.643 41.667 0.00 0.00 0.00 3.34
1873 3235 5.817816 AGTCTGTTTCTTGTTGGTACTGAAG 59.182 40.000 0.00 0.00 0.00 3.02
1888 3250 6.384015 TGGTACTGAAGATATGAACATCCTGT 59.616 38.462 0.00 0.00 0.00 4.00
1889 3251 6.703607 GGTACTGAAGATATGAACATCCTGTG 59.296 42.308 0.00 0.00 0.00 3.66
1919 3281 8.948631 TTGGTTATTTCTGATGCTACTTCTAG 57.051 34.615 0.00 0.00 0.00 2.43
1933 3295 6.890268 TGCTACTTCTAGTAACATCCTCTTGA 59.110 38.462 0.00 0.00 29.00 3.02
1934 3296 7.561722 TGCTACTTCTAGTAACATCCTCTTGAT 59.438 37.037 0.00 0.00 29.00 2.57
1935 3297 8.079809 GCTACTTCTAGTAACATCCTCTTGATC 58.920 40.741 0.00 0.00 29.00 2.92
1936 3298 7.962995 ACTTCTAGTAACATCCTCTTGATCA 57.037 36.000 0.00 0.00 0.00 2.92
1941 3303 8.904834 TCTAGTAACATCCTCTTGATCAGTAAC 58.095 37.037 0.00 0.00 0.00 2.50
1949 3311 4.323028 CCTCTTGATCAGTAACCAGCTGAA 60.323 45.833 17.39 0.00 44.82 3.02
2153 3523 8.328864 GCTTATGTTTGATGCTACTTGTAGTAC 58.671 37.037 9.22 0.00 0.00 2.73
2156 3526 5.929992 TGTTTGATGCTACTTGTAGTACCAC 59.070 40.000 9.22 0.00 0.00 4.16
2188 3669 3.788333 ATCAAAAGAATGGTGCATCCG 57.212 42.857 0.00 0.00 39.52 4.18
2223 3708 7.498900 TCTGTTCTTGTTCATGTTGAGTACATT 59.501 33.333 0.00 0.00 45.19 2.71
2235 3720 2.039746 TGAGTACATTTGTGTCCAGGGG 59.960 50.000 0.00 0.00 0.00 4.79
2273 3763 2.766828 GGGGCTCTGTAGTCTGTACAAT 59.233 50.000 0.00 0.00 0.00 2.71
2300 3790 4.651503 AGTGCTGCTAGTCTATGGTGTTAT 59.348 41.667 0.00 0.00 0.00 1.89
2306 3796 8.740906 GCTGCTAGTCTATGGTGTTATTCTATA 58.259 37.037 0.00 0.00 0.00 1.31
2356 3846 6.840780 AGAGCTTGGCAAATAAGTGTATTT 57.159 33.333 0.00 0.00 39.96 1.40
2357 3847 7.938140 AGAGCTTGGCAAATAAGTGTATTTA 57.062 32.000 0.00 0.00 37.75 1.40
2359 3849 8.971073 AGAGCTTGGCAAATAAGTGTATTTATT 58.029 29.630 0.00 0.00 37.75 1.40
2360 3850 8.931385 AGCTTGGCAAATAAGTGTATTTATTG 57.069 30.769 0.00 0.00 37.75 1.90
2361 3851 7.492344 AGCTTGGCAAATAAGTGTATTTATTGC 59.508 33.333 0.00 0.00 37.75 3.56
2362 3852 7.492344 GCTTGGCAAATAAGTGTATTTATTGCT 59.508 33.333 0.00 0.00 37.75 3.91
2363 3853 8.925161 TTGGCAAATAAGTGTATTTATTGCTC 57.075 30.769 0.00 0.00 37.75 4.26
2364 3854 8.060931 TGGCAAATAAGTGTATTTATTGCTCA 57.939 30.769 7.41 2.23 37.75 4.26
2366 3856 9.364989 GGCAAATAAGTGTATTTATTGCTCAAA 57.635 29.630 7.41 0.00 37.75 2.69
2380 4057 4.771590 TGCTCAAATTACCTTTGCTCAG 57.228 40.909 0.00 0.00 43.32 3.35
2386 4063 7.201767 GCTCAAATTACCTTTGCTCAGATATGT 60.202 37.037 0.00 0.00 43.32 2.29
2434 4111 0.331616 GTTGGCACCCCCTTCAGTAT 59.668 55.000 0.00 0.00 0.00 2.12
2435 4112 0.331278 TTGGCACCCCCTTCAGTATG 59.669 55.000 0.00 0.00 37.54 2.39
2436 4113 1.227383 GGCACCCCCTTCAGTATGG 59.773 63.158 0.00 0.00 36.16 2.74
2437 4114 1.227383 GCACCCCCTTCAGTATGGG 59.773 63.158 0.00 0.00 44.03 4.00
2438 4115 1.227383 CACCCCCTTCAGTATGGGC 59.773 63.158 0.00 0.00 42.07 5.36
2439 4116 1.230149 ACCCCCTTCAGTATGGGCA 60.230 57.895 0.00 0.00 42.07 5.36
2440 4117 1.227383 CCCCCTTCAGTATGGGCAC 59.773 63.158 0.00 0.00 42.03 5.01
2454 4131 2.429927 GGCACCATTATTCCCAGCC 58.570 57.895 0.00 0.00 0.00 4.85
2455 4132 0.106015 GGCACCATTATTCCCAGCCT 60.106 55.000 0.00 0.00 37.67 4.58
2456 4133 1.322442 GCACCATTATTCCCAGCCTC 58.678 55.000 0.00 0.00 0.00 4.70
2457 4134 1.133668 GCACCATTATTCCCAGCCTCT 60.134 52.381 0.00 0.00 0.00 3.69
2458 4135 2.106511 GCACCATTATTCCCAGCCTCTA 59.893 50.000 0.00 0.00 0.00 2.43
2459 4136 3.808618 GCACCATTATTCCCAGCCTCTAG 60.809 52.174 0.00 0.00 0.00 2.43
2460 4137 3.648067 CACCATTATTCCCAGCCTCTAGA 59.352 47.826 0.00 0.00 0.00 2.43
2461 4138 4.103153 CACCATTATTCCCAGCCTCTAGAA 59.897 45.833 0.00 0.00 0.00 2.10
2462 4139 4.103311 ACCATTATTCCCAGCCTCTAGAAC 59.897 45.833 0.00 0.00 0.00 3.01
2463 4140 4.103153 CCATTATTCCCAGCCTCTAGAACA 59.897 45.833 0.00 0.00 0.00 3.18
2464 4141 5.222007 CCATTATTCCCAGCCTCTAGAACAT 60.222 44.000 0.00 0.00 0.00 2.71
2465 4142 5.552870 TTATTCCCAGCCTCTAGAACATC 57.447 43.478 0.00 0.00 0.00 3.06
2466 4143 2.856760 TCCCAGCCTCTAGAACATCT 57.143 50.000 0.00 0.00 0.00 2.90
2467 4144 2.392662 TCCCAGCCTCTAGAACATCTG 58.607 52.381 0.00 0.00 0.00 2.90
2468 4145 1.415659 CCCAGCCTCTAGAACATCTGG 59.584 57.143 16.39 16.39 40.43 3.86
2469 4146 2.392662 CCAGCCTCTAGAACATCTGGA 58.607 52.381 17.60 0.00 42.64 3.86
2470 4147 2.768527 CCAGCCTCTAGAACATCTGGAA 59.231 50.000 17.60 0.00 42.64 3.53
2471 4148 3.181467 CCAGCCTCTAGAACATCTGGAAG 60.181 52.174 17.60 2.58 42.64 3.46
2472 4149 3.037549 AGCCTCTAGAACATCTGGAAGG 58.962 50.000 0.00 1.38 33.50 3.46
2473 4150 2.769095 GCCTCTAGAACATCTGGAAGGT 59.231 50.000 0.00 0.00 33.50 3.50
2482 4159 3.853355 CATCTGGAAGGTGGCTAAGAT 57.147 47.619 0.00 0.00 42.85 2.40
2483 4160 4.162040 CATCTGGAAGGTGGCTAAGATT 57.838 45.455 0.00 0.00 42.85 2.40
2484 4161 5.296151 CATCTGGAAGGTGGCTAAGATTA 57.704 43.478 0.00 0.00 42.85 1.75
2485 4162 5.874093 CATCTGGAAGGTGGCTAAGATTAT 58.126 41.667 0.00 0.00 42.85 1.28
2486 4163 5.552870 TCTGGAAGGTGGCTAAGATTATC 57.447 43.478 0.00 0.00 0.00 1.75
2487 4164 4.348168 TCTGGAAGGTGGCTAAGATTATCC 59.652 45.833 0.00 0.00 0.00 2.59
2488 4165 4.044308 TGGAAGGTGGCTAAGATTATCCA 58.956 43.478 0.00 0.00 32.33 3.41
2489 4166 4.103153 TGGAAGGTGGCTAAGATTATCCAG 59.897 45.833 0.00 0.00 30.25 3.86
2490 4167 4.505742 GGAAGGTGGCTAAGATTATCCAGG 60.506 50.000 0.00 0.00 30.25 4.45
2491 4168 2.982488 AGGTGGCTAAGATTATCCAGGG 59.018 50.000 0.00 0.00 30.25 4.45
2492 4169 2.979678 GGTGGCTAAGATTATCCAGGGA 59.020 50.000 0.00 0.00 30.25 4.20
2493 4170 3.589288 GGTGGCTAAGATTATCCAGGGAT 59.411 47.826 6.04 6.04 38.54 3.85
2494 4171 4.566488 GGTGGCTAAGATTATCCAGGGATG 60.566 50.000 11.08 0.00 36.17 3.51
2495 4172 4.287067 GTGGCTAAGATTATCCAGGGATGA 59.713 45.833 11.08 3.03 36.17 2.92
2496 4173 5.045286 GTGGCTAAGATTATCCAGGGATGAT 60.045 44.000 11.08 8.14 36.17 2.45
2497 4174 5.190528 TGGCTAAGATTATCCAGGGATGATC 59.809 44.000 19.92 19.92 43.59 2.92
2502 4179 5.176741 GATTATCCAGGGATGATCTTGCT 57.823 43.478 20.13 0.00 41.50 3.91
2503 4180 4.630644 TTATCCAGGGATGATCTTGCTC 57.369 45.455 11.08 0.00 36.17 4.26
2504 4181 1.135094 TCCAGGGATGATCTTGCTCC 58.865 55.000 0.00 0.00 0.00 4.70
2505 4182 0.250209 CCAGGGATGATCTTGCTCCG 60.250 60.000 0.00 0.00 0.00 4.63
2506 4183 0.467384 CAGGGATGATCTTGCTCCGT 59.533 55.000 0.00 0.00 0.00 4.69
2507 4184 0.755686 AGGGATGATCTTGCTCCGTC 59.244 55.000 0.00 0.00 0.00 4.79
2508 4185 0.755686 GGGATGATCTTGCTCCGTCT 59.244 55.000 0.00 0.00 0.00 4.18
2509 4186 1.964223 GGGATGATCTTGCTCCGTCTA 59.036 52.381 0.00 0.00 0.00 2.59
2510 4187 2.288518 GGGATGATCTTGCTCCGTCTAC 60.289 54.545 0.00 0.00 0.00 2.59
2511 4188 2.362397 GGATGATCTTGCTCCGTCTACA 59.638 50.000 0.00 0.00 0.00 2.74
2512 4189 2.941453 TGATCTTGCTCCGTCTACAC 57.059 50.000 0.00 0.00 0.00 2.90
2513 4190 2.167662 TGATCTTGCTCCGTCTACACA 58.832 47.619 0.00 0.00 0.00 3.72
2514 4191 2.560981 TGATCTTGCTCCGTCTACACAA 59.439 45.455 0.00 0.00 0.00 3.33
2515 4192 3.006430 TGATCTTGCTCCGTCTACACAAA 59.994 43.478 0.00 0.00 0.00 2.83
2516 4193 3.026630 TCTTGCTCCGTCTACACAAAG 57.973 47.619 0.00 0.00 0.00 2.77
2517 4194 2.626266 TCTTGCTCCGTCTACACAAAGA 59.374 45.455 0.00 0.00 0.00 2.52
2518 4195 2.724977 TGCTCCGTCTACACAAAGAG 57.275 50.000 0.00 0.00 0.00 2.85
2519 4196 2.235891 TGCTCCGTCTACACAAAGAGA 58.764 47.619 0.00 0.00 0.00 3.10
2520 4197 2.229062 TGCTCCGTCTACACAAAGAGAG 59.771 50.000 0.00 0.00 0.00 3.20
2521 4198 2.229302 GCTCCGTCTACACAAAGAGAGT 59.771 50.000 0.00 0.00 0.00 3.24
2522 4199 3.827625 CTCCGTCTACACAAAGAGAGTG 58.172 50.000 0.00 0.00 42.56 3.51
2523 4200 3.483421 TCCGTCTACACAAAGAGAGTGA 58.517 45.455 0.00 0.00 40.16 3.41
2524 4201 3.887110 TCCGTCTACACAAAGAGAGTGAA 59.113 43.478 0.00 0.00 40.16 3.18
2525 4202 4.023107 TCCGTCTACACAAAGAGAGTGAAG 60.023 45.833 0.00 0.00 40.16 3.02
2526 4203 4.023107 CCGTCTACACAAAGAGAGTGAAGA 60.023 45.833 0.00 0.00 40.16 2.87
2527 4204 4.912766 CGTCTACACAAAGAGAGTGAAGAC 59.087 45.833 0.00 0.00 40.16 3.01
2528 4205 5.224135 GTCTACACAAAGAGAGTGAAGACC 58.776 45.833 0.00 0.00 40.16 3.85
2529 4206 4.893524 TCTACACAAAGAGAGTGAAGACCA 59.106 41.667 0.00 0.00 40.16 4.02
2530 4207 4.487714 ACACAAAGAGAGTGAAGACCAA 57.512 40.909 0.00 0.00 40.16 3.67
2531 4208 4.446371 ACACAAAGAGAGTGAAGACCAAG 58.554 43.478 0.00 0.00 40.16 3.61
2532 4209 3.249559 CACAAAGAGAGTGAAGACCAAGC 59.750 47.826 0.00 0.00 39.30 4.01
2533 4210 2.810852 CAAAGAGAGTGAAGACCAAGCC 59.189 50.000 0.00 0.00 0.00 4.35
2534 4211 0.980423 AGAGAGTGAAGACCAAGCCC 59.020 55.000 0.00 0.00 0.00 5.19
2535 4212 0.035915 GAGAGTGAAGACCAAGCCCC 60.036 60.000 0.00 0.00 0.00 5.80
2536 4213 0.474660 AGAGTGAAGACCAAGCCCCT 60.475 55.000 0.00 0.00 0.00 4.79
2537 4214 0.035915 GAGTGAAGACCAAGCCCCTC 60.036 60.000 0.00 0.00 0.00 4.30
2538 4215 1.376037 GTGAAGACCAAGCCCCTCG 60.376 63.158 0.00 0.00 0.00 4.63
2539 4216 2.436824 GAAGACCAAGCCCCTCGC 60.437 66.667 0.00 0.00 37.98 5.03
2551 4228 2.756829 GCCCCTCGCTTTTCTAGATAC 58.243 52.381 0.00 0.00 0.00 2.24
2552 4229 2.102588 GCCCCTCGCTTTTCTAGATACA 59.897 50.000 0.00 0.00 0.00 2.29
2553 4230 3.431766 GCCCCTCGCTTTTCTAGATACAA 60.432 47.826 0.00 0.00 0.00 2.41
2554 4231 4.120589 CCCCTCGCTTTTCTAGATACAAC 58.879 47.826 0.00 0.00 0.00 3.32
2555 4232 4.382685 CCCCTCGCTTTTCTAGATACAACA 60.383 45.833 0.00 0.00 0.00 3.33
2556 4233 5.360591 CCCTCGCTTTTCTAGATACAACAT 58.639 41.667 0.00 0.00 0.00 2.71
2557 4234 6.462487 CCCCTCGCTTTTCTAGATACAACATA 60.462 42.308 0.00 0.00 0.00 2.29
2558 4235 6.421202 CCCTCGCTTTTCTAGATACAACATAC 59.579 42.308 0.00 0.00 0.00 2.39
2559 4236 7.203910 CCTCGCTTTTCTAGATACAACATACT 58.796 38.462 0.00 0.00 0.00 2.12
2560 4237 7.707035 CCTCGCTTTTCTAGATACAACATACTT 59.293 37.037 0.00 0.00 0.00 2.24
2561 4238 8.997621 TCGCTTTTCTAGATACAACATACTTT 57.002 30.769 0.00 0.00 0.00 2.66
2562 4239 8.869897 TCGCTTTTCTAGATACAACATACTTTG 58.130 33.333 0.00 0.00 0.00 2.77
2563 4240 7.636359 CGCTTTTCTAGATACAACATACTTTGC 59.364 37.037 0.00 0.00 0.00 3.68
2564 4241 8.450964 GCTTTTCTAGATACAACATACTTTGCA 58.549 33.333 0.00 0.00 0.00 4.08
2573 4250 9.289303 GATACAACATACTTTGCAATTTGTAGG 57.711 33.333 0.00 8.68 32.95 3.18
2574 4251 7.049799 ACAACATACTTTGCAATTTGTAGGT 57.950 32.000 14.73 14.73 32.44 3.08
2575 4252 8.172352 ACAACATACTTTGCAATTTGTAGGTA 57.828 30.769 18.34 2.87 31.18 3.08
2576 4253 8.296713 ACAACATACTTTGCAATTTGTAGGTAG 58.703 33.333 18.34 6.50 31.18 3.18
2577 4254 6.852664 ACATACTTTGCAATTTGTAGGTAGC 58.147 36.000 17.27 0.00 29.90 3.58
2578 4255 6.659242 ACATACTTTGCAATTTGTAGGTAGCT 59.341 34.615 17.27 0.00 29.90 3.32
2579 4256 5.629079 ACTTTGCAATTTGTAGGTAGCTC 57.371 39.130 0.00 0.00 0.00 4.09
2580 4257 4.459337 ACTTTGCAATTTGTAGGTAGCTCC 59.541 41.667 0.00 0.00 0.00 4.70
2581 4258 2.999331 TGCAATTTGTAGGTAGCTCCC 58.001 47.619 0.00 0.00 36.75 4.30
2582 4259 2.307392 TGCAATTTGTAGGTAGCTCCCA 59.693 45.455 0.00 0.00 36.75 4.37
2583 4260 3.053693 TGCAATTTGTAGGTAGCTCCCAT 60.054 43.478 0.00 0.00 36.75 4.00
2584 4261 3.954258 GCAATTTGTAGGTAGCTCCCATT 59.046 43.478 0.00 0.00 36.75 3.16
2585 4262 4.402474 GCAATTTGTAGGTAGCTCCCATTT 59.598 41.667 0.00 0.00 36.75 2.32
2586 4263 5.450550 GCAATTTGTAGGTAGCTCCCATTTC 60.451 44.000 0.00 0.00 36.75 2.17
2587 4264 5.717119 ATTTGTAGGTAGCTCCCATTTCT 57.283 39.130 0.00 0.00 36.75 2.52
2588 4265 4.755266 TTGTAGGTAGCTCCCATTTCTC 57.245 45.455 0.00 0.00 36.75 2.87
2589 4266 3.039011 TGTAGGTAGCTCCCATTTCTCC 58.961 50.000 0.00 0.00 36.75 3.71
2590 4267 1.512735 AGGTAGCTCCCATTTCTCCC 58.487 55.000 0.00 0.00 36.75 4.30
2591 4268 1.010170 AGGTAGCTCCCATTTCTCCCT 59.990 52.381 0.00 0.00 36.75 4.20
2592 4269 1.141858 GGTAGCTCCCATTTCTCCCTG 59.858 57.143 0.00 0.00 0.00 4.45
2593 4270 1.840635 GTAGCTCCCATTTCTCCCTGT 59.159 52.381 0.00 0.00 0.00 4.00
2594 4271 2.270434 AGCTCCCATTTCTCCCTGTA 57.730 50.000 0.00 0.00 0.00 2.74
2595 4272 2.781667 AGCTCCCATTTCTCCCTGTAT 58.218 47.619 0.00 0.00 0.00 2.29
2596 4273 3.941629 AGCTCCCATTTCTCCCTGTATA 58.058 45.455 0.00 0.00 0.00 1.47
2597 4274 4.507342 AGCTCCCATTTCTCCCTGTATAT 58.493 43.478 0.00 0.00 0.00 0.86
2598 4275 4.534103 AGCTCCCATTTCTCCCTGTATATC 59.466 45.833 0.00 0.00 0.00 1.63
2599 4276 4.323868 GCTCCCATTTCTCCCTGTATATCC 60.324 50.000 0.00 0.00 0.00 2.59
2600 4277 4.175962 TCCCATTTCTCCCTGTATATCCC 58.824 47.826 0.00 0.00 0.00 3.85
2601 4278 3.267031 CCCATTTCTCCCTGTATATCCCC 59.733 52.174 0.00 0.00 0.00 4.81
2602 4279 4.179133 CCATTTCTCCCTGTATATCCCCT 58.821 47.826 0.00 0.00 0.00 4.79
2603 4280 4.018960 CCATTTCTCCCTGTATATCCCCTG 60.019 50.000 0.00 0.00 0.00 4.45
2604 4281 4.295905 TTTCTCCCTGTATATCCCCTGT 57.704 45.455 0.00 0.00 0.00 4.00
2605 4282 3.544698 TCTCCCTGTATATCCCCTGTC 57.455 52.381 0.00 0.00 0.00 3.51
2606 4283 3.072086 TCTCCCTGTATATCCCCTGTCT 58.928 50.000 0.00 0.00 0.00 3.41
2607 4284 3.471306 TCTCCCTGTATATCCCCTGTCTT 59.529 47.826 0.00 0.00 0.00 3.01
2608 4285 4.077982 TCTCCCTGTATATCCCCTGTCTTT 60.078 45.833 0.00 0.00 0.00 2.52
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
30 31 6.343716 TGCAACACACCTTCAATTTGATAT 57.656 33.333 0.00 0.00 0.00 1.63
40 41 3.184094 GCACATGCAACACACCTTC 57.816 52.632 0.00 0.00 41.59 3.46
61 62 8.050778 TGCGACAAAGAGTAATTTCCATAATT 57.949 30.769 0.00 0.00 0.00 1.40
75 76 6.893958 ACAGTAGATAAATGCGACAAAGAG 57.106 37.500 0.00 0.00 0.00 2.85
100 101 5.401674 GCGGAAACATACGTATCTAGGAAAG 59.598 44.000 4.74 0.00 0.00 2.62
104 108 3.979495 GTGCGGAAACATACGTATCTAGG 59.021 47.826 4.74 0.00 0.00 3.02
143 147 9.781834 TTTGTACTGTTTTCTGTATTGACAAAG 57.218 29.630 0.00 0.00 34.63 2.77
206 233 1.648467 GAACATGGAAGCTCGGGTGC 61.648 60.000 0.00 0.00 0.00 5.01
218 245 2.002586 GTCTCGTGTGGATGAACATGG 58.997 52.381 0.00 0.00 37.61 3.66
220 247 3.685139 AAGTCTCGTGTGGATGAACAT 57.315 42.857 0.00 0.00 31.49 2.71
223 250 3.162666 AGGTAAGTCTCGTGTGGATGAA 58.837 45.455 0.00 0.00 0.00 2.57
246 273 9.535878 CGCTAGGTCTTAATTAGAAGAAATTCT 57.464 33.333 0.00 0.00 37.20 2.40
256 283 4.441415 CGCTGTTCGCTAGGTCTTAATTAG 59.559 45.833 0.00 0.00 36.13 1.73
260 287 2.273370 CGCTGTTCGCTAGGTCTTAA 57.727 50.000 0.00 0.00 36.13 1.85
380 409 4.980573 TGCTGGTTGTTACAAACTCCTAT 58.019 39.130 14.51 0.00 0.00 2.57
441 472 4.685169 AGAAACACGATACATTTGCCTG 57.315 40.909 0.00 0.00 0.00 4.85
498 530 1.692411 AGAAAGGTTGACACCCTTGC 58.308 50.000 4.86 3.05 45.63 4.01
593 625 8.964420 ATCGTTTAAAATGTTTAGTGTCATGG 57.036 30.769 0.00 0.00 0.00 3.66
604 636 8.710835 ACCTTTGTTGAATCGTTTAAAATGTT 57.289 26.923 0.00 0.00 0.00 2.71
620 652 4.832248 TGCTCATACTCCTACCTTTGTTG 58.168 43.478 0.00 0.00 0.00 3.33
631 663 1.300542 GGCGCTCTGCTCATACTCC 60.301 63.158 7.64 0.00 45.43 3.85
635 667 1.738432 CTCTGGCGCTCTGCTCATA 59.262 57.895 7.64 0.00 45.43 2.15
637 669 4.447989 GCTCTGGCGCTCTGCTCA 62.448 66.667 7.64 0.00 45.43 4.26
641 673 3.767228 TATTGTGGCTCTGGCGCTCTG 62.767 57.143 7.64 1.60 39.38 3.35
643 675 1.153369 TATTGTGGCTCTGGCGCTC 60.153 57.895 7.64 0.00 39.38 5.03
645 677 2.813179 CGTATTGTGGCTCTGGCGC 61.813 63.158 0.00 0.00 39.81 6.53
647 679 1.165270 AAACGTATTGTGGCTCTGGC 58.835 50.000 0.00 0.00 37.82 4.85
648 680 2.347452 CGTAAACGTATTGTGGCTCTGG 59.653 50.000 0.00 0.00 34.11 3.86
649 681 2.222729 GCGTAAACGTATTGTGGCTCTG 60.223 50.000 4.24 0.00 42.22 3.35
650 682 1.997606 GCGTAAACGTATTGTGGCTCT 59.002 47.619 4.24 0.00 42.22 4.09
651 683 1.727880 TGCGTAAACGTATTGTGGCTC 59.272 47.619 4.24 0.00 42.22 4.70
652 684 1.798283 TGCGTAAACGTATTGTGGCT 58.202 45.000 4.24 0.00 42.22 4.75
653 685 2.096119 AGTTGCGTAAACGTATTGTGGC 60.096 45.455 4.24 0.00 44.04 5.01
654 686 3.184783 TCAGTTGCGTAAACGTATTGTGG 59.815 43.478 4.24 0.00 44.04 4.17
655 687 4.377911 TCAGTTGCGTAAACGTATTGTG 57.622 40.909 4.24 0.00 44.04 3.33
656 688 4.318974 GGTTCAGTTGCGTAAACGTATTGT 60.319 41.667 4.24 0.00 44.04 2.71
657 689 4.145997 GGTTCAGTTGCGTAAACGTATTG 58.854 43.478 4.24 2.46 44.04 1.90
658 690 3.187022 GGGTTCAGTTGCGTAAACGTATT 59.813 43.478 4.24 0.00 44.04 1.89
662 694 0.938713 TGGGTTCAGTTGCGTAAACG 59.061 50.000 0.00 0.00 44.04 3.60
668 700 8.918961 TTAAATATATTTTGGGTTCAGTTGCG 57.081 30.769 15.64 0.00 0.00 4.85
790 861 2.941415 GCCGACTCACCCATCATCTTTT 60.941 50.000 0.00 0.00 0.00 2.27
802 873 1.463674 AATGAAATGGGCCGACTCAC 58.536 50.000 0.00 0.00 0.00 3.51
818 893 0.321475 AATGGGTTTGGCGCCAAATG 60.321 50.000 46.39 0.00 45.90 2.32
819 894 0.399833 AAATGGGTTTGGCGCCAAAT 59.600 45.000 46.39 32.71 45.90 2.32
862 946 1.821258 GGCGGGAGAGTTTATCGGT 59.179 57.895 0.00 0.00 0.00 4.69
985 1082 0.749649 ACCATGGCGAGTGAGATCTC 59.250 55.000 16.21 16.21 0.00 2.75
986 1083 0.463204 CACCATGGCGAGTGAGATCT 59.537 55.000 13.04 0.00 36.01 2.75
1228 2567 1.677966 CCTCCTCGTCCTTGTCCGA 60.678 63.158 0.00 0.00 0.00 4.55
1229 2568 1.038130 ATCCTCCTCGTCCTTGTCCG 61.038 60.000 0.00 0.00 0.00 4.79
1286 2625 1.792651 CCTCCTCCTCCTCCTCCTTAT 59.207 57.143 0.00 0.00 0.00 1.73
1294 2633 1.152839 CGGACTCCTCCTCCTCCTC 60.153 68.421 0.00 0.00 33.79 3.71
1295 2634 2.695970 CCGGACTCCTCCTCCTCCT 61.696 68.421 0.00 0.00 33.79 3.69
1296 2635 2.123640 CCGGACTCCTCCTCCTCC 60.124 72.222 0.00 0.00 33.79 4.30
1297 2636 2.123640 CCCGGACTCCTCCTCCTC 60.124 72.222 0.73 0.00 33.79 3.71
1298 2637 3.756783 CCCCGGACTCCTCCTCCT 61.757 72.222 0.73 0.00 33.79 3.69
1299 2638 3.742248 CTCCCCGGACTCCTCCTCC 62.742 73.684 0.73 0.00 33.79 4.30
1301 2640 2.947785 ACTCCCCGGACTCCTCCT 60.948 66.667 0.73 0.00 33.79 3.69
1302 2641 2.442458 GACTCCCCGGACTCCTCC 60.442 72.222 0.73 0.00 0.00 4.30
1303 2642 2.829458 CGACTCCCCGGACTCCTC 60.829 72.222 0.73 0.00 0.00 3.71
1312 2651 3.139469 GTCCTCGTCCGACTCCCC 61.139 72.222 0.00 0.00 0.00 4.81
1313 2652 3.507009 CGTCCTCGTCCGACTCCC 61.507 72.222 0.00 0.00 0.00 4.30
1316 2655 2.436292 CCTCGTCCTCGTCCGACT 60.436 66.667 0.00 0.00 38.33 4.18
1317 2656 2.435586 TCCTCGTCCTCGTCCGAC 60.436 66.667 0.00 0.00 38.33 4.79
1323 2662 1.820481 GGACTCCTCCTCGTCCTCG 60.820 68.421 0.00 0.00 44.90 4.63
1345 2684 1.378778 CCTCGTCCTCCTCCGACTT 60.379 63.158 0.00 0.00 0.00 3.01
1360 2699 2.750637 TGACTCGCCGGACTCCTC 60.751 66.667 5.05 0.00 0.00 3.71
1361 2700 2.752238 CTGACTCGCCGGACTCCT 60.752 66.667 5.05 0.00 0.00 3.69
1365 2707 2.750637 TCCTCTGACTCGCCGGAC 60.751 66.667 5.05 0.00 0.00 4.79
1377 2719 1.641552 CCTCCTCCTCGTCCTCCTCT 61.642 65.000 0.00 0.00 0.00 3.69
1380 2722 1.152839 CTCCTCCTCCTCGTCCTCC 60.153 68.421 0.00 0.00 0.00 4.30
1381 2723 1.152839 CCTCCTCCTCCTCGTCCTC 60.153 68.421 0.00 0.00 0.00 3.71
1382 2724 0.623911 TACCTCCTCCTCCTCGTCCT 60.624 60.000 0.00 0.00 0.00 3.85
1383 2725 0.179012 CTACCTCCTCCTCCTCGTCC 60.179 65.000 0.00 0.00 0.00 4.79
1384 2726 0.820482 GCTACCTCCTCCTCCTCGTC 60.820 65.000 0.00 0.00 0.00 4.20
1385 2727 1.227946 GCTACCTCCTCCTCCTCGT 59.772 63.158 0.00 0.00 0.00 4.18
1386 2728 1.894756 CGCTACCTCCTCCTCCTCG 60.895 68.421 0.00 0.00 0.00 4.63
1387 2729 2.197605 GCGCTACCTCCTCCTCCTC 61.198 68.421 0.00 0.00 0.00 3.71
1388 2730 2.123640 GCGCTACCTCCTCCTCCT 60.124 66.667 0.00 0.00 0.00 3.69
1389 2731 2.123640 AGCGCTACCTCCTCCTCC 60.124 66.667 8.99 0.00 0.00 4.30
1390 2732 2.548295 CGAGCGCTACCTCCTCCTC 61.548 68.421 11.50 0.00 0.00 3.71
1430 2772 1.293498 GCGACAGCCTTCTTCCTCA 59.707 57.895 0.00 0.00 37.42 3.86
1449 2791 3.191539 GAAGGAGCAGAAGCCGCG 61.192 66.667 0.00 0.00 43.56 6.46
1626 2968 2.416747 GCCTCAATCGCTATGCACATA 58.583 47.619 0.00 0.00 0.00 2.29
1627 2969 1.233019 GCCTCAATCGCTATGCACAT 58.767 50.000 0.00 0.00 0.00 3.21
1628 2970 1.153597 CGCCTCAATCGCTATGCACA 61.154 55.000 0.00 0.00 0.00 4.57
1629 2971 1.154205 ACGCCTCAATCGCTATGCAC 61.154 55.000 0.00 0.00 0.00 4.57
1631 2973 0.875908 TCACGCCTCAATCGCTATGC 60.876 55.000 0.00 0.00 0.00 3.14
1640 2997 1.266178 TCTCCAAGATCACGCCTCAA 58.734 50.000 0.00 0.00 0.00 3.02
1643 3000 0.179062 GCATCTCCAAGATCACGCCT 60.179 55.000 0.00 0.00 31.32 5.52
1671 3032 4.462508 TCCAGCATTTCAACAAACACAA 57.537 36.364 0.00 0.00 0.00 3.33
1694 3056 0.394565 AGCACTGACAACAGACCTCC 59.605 55.000 0.00 0.00 46.03 4.30
1733 3095 5.537674 GGGACTAGTAATATGTTTCCGGAGA 59.462 44.000 3.34 0.00 0.00 3.71
1738 3100 8.142551 CAGTACAGGGACTAGTAATATGTTTCC 58.857 40.741 0.00 0.00 36.02 3.13
1747 3109 6.378661 TCAGTACAGTACAGGGACTAGTAA 57.621 41.667 13.37 0.00 36.02 2.24
1811 3173 8.243426 TGAATTTATATGGCAACTTCAACTGAC 58.757 33.333 0.00 0.00 37.61 3.51
1833 3195 9.075678 AGAAACAGACTGAGAATTCATTTGAAT 57.924 29.630 10.08 0.00 45.91 2.57
1834 3196 8.455903 AGAAACAGACTGAGAATTCATTTGAA 57.544 30.769 10.08 0.00 38.56 2.69
1835 3197 8.347771 CAAGAAACAGACTGAGAATTCATTTGA 58.652 33.333 10.08 0.00 31.68 2.69
1836 3198 8.133627 ACAAGAAACAGACTGAGAATTCATTTG 58.866 33.333 10.08 10.78 31.68 2.32
1837 3199 8.230472 ACAAGAAACAGACTGAGAATTCATTT 57.770 30.769 10.08 0.00 31.68 2.32
1838 3200 7.814264 ACAAGAAACAGACTGAGAATTCATT 57.186 32.000 10.08 0.00 31.68 2.57
1839 3201 7.255381 CCAACAAGAAACAGACTGAGAATTCAT 60.255 37.037 10.08 0.00 31.68 2.57
1840 3202 6.038603 CCAACAAGAAACAGACTGAGAATTCA 59.961 38.462 10.08 0.00 0.00 2.57
1841 3203 6.038714 ACCAACAAGAAACAGACTGAGAATTC 59.961 38.462 10.08 7.97 0.00 2.17
1842 3204 5.888161 ACCAACAAGAAACAGACTGAGAATT 59.112 36.000 10.08 0.00 0.00 2.17
1843 3205 5.440610 ACCAACAAGAAACAGACTGAGAAT 58.559 37.500 10.08 0.00 0.00 2.40
1844 3206 4.843728 ACCAACAAGAAACAGACTGAGAA 58.156 39.130 10.08 0.00 0.00 2.87
1845 3207 4.487714 ACCAACAAGAAACAGACTGAGA 57.512 40.909 10.08 0.00 0.00 3.27
1846 3208 5.235186 CAGTACCAACAAGAAACAGACTGAG 59.765 44.000 10.08 0.00 34.98 3.35
1847 3209 5.105106 TCAGTACCAACAAGAAACAGACTGA 60.105 40.000 10.08 0.00 38.67 3.41
1848 3210 5.116180 TCAGTACCAACAAGAAACAGACTG 58.884 41.667 0.00 0.00 34.46 3.51
1849 3211 5.353394 TCAGTACCAACAAGAAACAGACT 57.647 39.130 0.00 0.00 0.00 3.24
1850 3212 5.815740 TCTTCAGTACCAACAAGAAACAGAC 59.184 40.000 0.00 0.00 0.00 3.51
1851 3213 5.984725 TCTTCAGTACCAACAAGAAACAGA 58.015 37.500 0.00 0.00 0.00 3.41
1852 3214 6.867662 ATCTTCAGTACCAACAAGAAACAG 57.132 37.500 0.00 0.00 0.00 3.16
1853 3215 8.154203 TCATATCTTCAGTACCAACAAGAAACA 58.846 33.333 0.00 0.00 0.00 2.83
1854 3216 8.547967 TCATATCTTCAGTACCAACAAGAAAC 57.452 34.615 0.00 0.00 0.00 2.78
1855 3217 8.999431 GTTCATATCTTCAGTACCAACAAGAAA 58.001 33.333 0.00 0.00 0.00 2.52
1856 3218 8.154203 TGTTCATATCTTCAGTACCAACAAGAA 58.846 33.333 0.00 0.00 0.00 2.52
1857 3219 7.676004 TGTTCATATCTTCAGTACCAACAAGA 58.324 34.615 0.00 0.00 0.00 3.02
1858 3220 7.905604 TGTTCATATCTTCAGTACCAACAAG 57.094 36.000 0.00 0.00 0.00 3.16
1859 3221 7.552687 GGATGTTCATATCTTCAGTACCAACAA 59.447 37.037 0.00 0.00 0.00 2.83
1860 3222 7.047891 GGATGTTCATATCTTCAGTACCAACA 58.952 38.462 0.00 0.00 0.00 3.33
1861 3223 7.225538 CAGGATGTTCATATCTTCAGTACCAAC 59.774 40.741 0.00 0.00 0.00 3.77
1862 3224 7.275183 CAGGATGTTCATATCTTCAGTACCAA 58.725 38.462 0.00 0.00 0.00 3.67
1863 3225 6.820335 CAGGATGTTCATATCTTCAGTACCA 58.180 40.000 0.00 0.00 0.00 3.25
1888 3250 6.899393 AGCATCAGAAATAACCAAGAAACA 57.101 33.333 0.00 0.00 0.00 2.83
1889 3251 8.045176 AGTAGCATCAGAAATAACCAAGAAAC 57.955 34.615 0.00 0.00 0.00 2.78
1919 3281 6.640518 TGGTTACTGATCAAGAGGATGTTAC 58.359 40.000 0.00 0.00 36.00 2.50
1933 3295 3.679389 CTGGTTTCAGCTGGTTACTGAT 58.321 45.455 15.13 0.00 43.40 2.90
1934 3296 3.126001 CTGGTTTCAGCTGGTTACTGA 57.874 47.619 15.13 0.00 42.30 3.41
1949 3311 5.736813 ACATTTGCAATTCATATGCTGGTT 58.263 33.333 0.00 0.00 44.14 3.67
2153 3523 9.403110 CATTCTTTTGATTAAACAAGAGAGTGG 57.597 33.333 22.39 12.49 40.91 4.00
2156 3526 9.403110 CACCATTCTTTTGATTAAACAAGAGAG 57.597 33.333 15.28 9.26 40.34 3.20
2223 3708 2.449518 TCTGCCCCCTGGACACAA 60.450 61.111 0.00 0.00 0.00 3.33
2235 3720 2.583520 CTGTCCCTCTGCTCTGCC 59.416 66.667 0.00 0.00 0.00 4.85
2263 3753 2.350522 CAGCACTGGGATTGTACAGAC 58.649 52.381 0.00 0.00 38.09 3.51
2273 3763 2.034878 CATAGACTAGCAGCACTGGGA 58.965 52.381 0.00 0.00 0.00 4.37
2364 3854 7.615365 TCCAACATATCTGAGCAAAGGTAATTT 59.385 33.333 0.00 0.00 0.00 1.82
2366 3856 6.662755 TCCAACATATCTGAGCAAAGGTAAT 58.337 36.000 0.00 0.00 0.00 1.89
2367 3857 6.061022 TCCAACATATCTGAGCAAAGGTAA 57.939 37.500 0.00 0.00 0.00 2.85
2371 4048 6.095860 TGGAATTCCAACATATCTGAGCAAAG 59.904 38.462 25.13 0.00 44.35 2.77
2397 4074 0.956633 ACTGCATCTGTTTGGCACTG 59.043 50.000 0.00 0.00 33.34 3.66
2402 4079 3.502237 GCCAACTGCATCTGTTTGG 57.498 52.632 0.00 0.00 40.77 3.28
2435 4112 1.115326 GGCTGGGAATAATGGTGCCC 61.115 60.000 0.00 0.00 41.08 5.36
2436 4113 0.106015 AGGCTGGGAATAATGGTGCC 60.106 55.000 0.00 0.00 39.19 5.01
2437 4114 1.133668 AGAGGCTGGGAATAATGGTGC 60.134 52.381 0.00 0.00 0.00 5.01
2438 4115 3.648067 TCTAGAGGCTGGGAATAATGGTG 59.352 47.826 0.00 0.00 0.00 4.17
2439 4116 3.941629 TCTAGAGGCTGGGAATAATGGT 58.058 45.455 0.00 0.00 0.00 3.55
2440 4117 4.103153 TGTTCTAGAGGCTGGGAATAATGG 59.897 45.833 0.00 0.00 0.00 3.16
2441 4118 5.296151 TGTTCTAGAGGCTGGGAATAATG 57.704 43.478 0.00 0.00 0.00 1.90
2442 4119 5.848921 AGATGTTCTAGAGGCTGGGAATAAT 59.151 40.000 0.00 0.00 0.00 1.28
2443 4120 5.070981 CAGATGTTCTAGAGGCTGGGAATAA 59.929 44.000 0.00 0.00 0.00 1.40
2444 4121 4.590647 CAGATGTTCTAGAGGCTGGGAATA 59.409 45.833 0.00 0.00 0.00 1.75
2445 4122 3.390639 CAGATGTTCTAGAGGCTGGGAAT 59.609 47.826 0.00 0.00 0.00 3.01
2446 4123 2.768527 CAGATGTTCTAGAGGCTGGGAA 59.231 50.000 0.00 0.00 0.00 3.97
2447 4124 2.392662 CAGATGTTCTAGAGGCTGGGA 58.607 52.381 0.00 0.00 0.00 4.37
2448 4125 1.415659 CCAGATGTTCTAGAGGCTGGG 59.584 57.143 17.65 4.85 39.30 4.45
2449 4126 2.392662 TCCAGATGTTCTAGAGGCTGG 58.607 52.381 18.64 18.64 43.20 4.85
2450 4127 3.181467 CCTTCCAGATGTTCTAGAGGCTG 60.181 52.174 0.00 0.00 0.00 4.85
2451 4128 3.037549 CCTTCCAGATGTTCTAGAGGCT 58.962 50.000 0.00 0.00 0.00 4.58
2452 4129 2.769095 ACCTTCCAGATGTTCTAGAGGC 59.231 50.000 0.00 0.00 0.00 4.70
2453 4130 3.133721 CCACCTTCCAGATGTTCTAGAGG 59.866 52.174 0.00 0.00 0.00 3.69
2454 4131 3.431486 GCCACCTTCCAGATGTTCTAGAG 60.431 52.174 0.00 0.00 0.00 2.43
2455 4132 2.501723 GCCACCTTCCAGATGTTCTAGA 59.498 50.000 0.00 0.00 0.00 2.43
2456 4133 2.503356 AGCCACCTTCCAGATGTTCTAG 59.497 50.000 0.00 0.00 0.00 2.43
2457 4134 2.551270 AGCCACCTTCCAGATGTTCTA 58.449 47.619 0.00 0.00 0.00 2.10
2458 4135 1.366319 AGCCACCTTCCAGATGTTCT 58.634 50.000 0.00 0.00 0.00 3.01
2459 4136 3.055094 TCTTAGCCACCTTCCAGATGTTC 60.055 47.826 0.00 0.00 0.00 3.18
2460 4137 2.912956 TCTTAGCCACCTTCCAGATGTT 59.087 45.455 0.00 0.00 0.00 2.71
2461 4138 2.551270 TCTTAGCCACCTTCCAGATGT 58.449 47.619 0.00 0.00 0.00 3.06
2462 4139 3.853355 ATCTTAGCCACCTTCCAGATG 57.147 47.619 0.00 0.00 0.00 2.90
2463 4140 5.013599 GGATAATCTTAGCCACCTTCCAGAT 59.986 44.000 0.00 0.00 39.00 2.90
2464 4141 4.348168 GGATAATCTTAGCCACCTTCCAGA 59.652 45.833 0.00 0.00 39.00 3.86
2465 4142 4.103153 TGGATAATCTTAGCCACCTTCCAG 59.897 45.833 2.87 0.00 43.69 3.86
2466 4143 4.044308 TGGATAATCTTAGCCACCTTCCA 58.956 43.478 2.87 0.00 43.69 3.53
2467 4144 4.505742 CCTGGATAATCTTAGCCACCTTCC 60.506 50.000 2.87 0.00 43.69 3.46
2468 4145 4.505742 CCCTGGATAATCTTAGCCACCTTC 60.506 50.000 2.87 0.00 43.69 3.46
2469 4146 3.395941 CCCTGGATAATCTTAGCCACCTT 59.604 47.826 2.87 0.00 43.69 3.50
2470 4147 2.982488 CCCTGGATAATCTTAGCCACCT 59.018 50.000 2.87 0.00 43.69 4.00
2471 4148 2.979678 TCCCTGGATAATCTTAGCCACC 59.020 50.000 2.87 0.00 43.69 4.61
2472 4149 4.287067 TCATCCCTGGATAATCTTAGCCAC 59.713 45.833 2.87 0.00 43.69 5.01
2473 4150 4.502415 TCATCCCTGGATAATCTTAGCCA 58.498 43.478 6.75 6.75 46.11 4.75
2474 4151 5.428131 AGATCATCCCTGGATAATCTTAGCC 59.572 44.000 6.07 0.00 36.48 3.93
2475 4152 6.558488 AGATCATCCCTGGATAATCTTAGC 57.442 41.667 6.07 0.00 36.48 3.09
2476 4153 6.822676 GCAAGATCATCCCTGGATAATCTTAG 59.177 42.308 19.66 15.59 43.84 2.18
2477 4154 6.503217 AGCAAGATCATCCCTGGATAATCTTA 59.497 38.462 19.66 0.00 43.84 2.10
2478 4155 5.312708 AGCAAGATCATCCCTGGATAATCTT 59.687 40.000 15.93 15.93 45.54 2.40
2479 4156 4.850963 AGCAAGATCATCCCTGGATAATCT 59.149 41.667 6.07 6.07 40.36 2.40
2480 4157 5.176741 AGCAAGATCATCCCTGGATAATC 57.823 43.478 1.55 1.55 31.11 1.75
2481 4158 4.018597 GGAGCAAGATCATCCCTGGATAAT 60.019 45.833 0.00 0.00 32.93 1.28
2482 4159 3.328931 GGAGCAAGATCATCCCTGGATAA 59.671 47.826 0.00 0.00 32.93 1.75
2483 4160 2.909006 GGAGCAAGATCATCCCTGGATA 59.091 50.000 0.00 0.00 32.93 2.59
2484 4161 1.704070 GGAGCAAGATCATCCCTGGAT 59.296 52.381 0.00 0.00 34.81 3.41
2485 4162 1.135094 GGAGCAAGATCATCCCTGGA 58.865 55.000 0.00 0.00 0.00 3.86
2486 4163 0.250209 CGGAGCAAGATCATCCCTGG 60.250 60.000 0.00 0.00 0.00 4.45
2487 4164 0.467384 ACGGAGCAAGATCATCCCTG 59.533 55.000 0.00 0.00 0.00 4.45
2488 4165 0.755686 GACGGAGCAAGATCATCCCT 59.244 55.000 0.00 0.00 0.00 4.20
2489 4166 0.755686 AGACGGAGCAAGATCATCCC 59.244 55.000 0.00 0.00 0.00 3.85
2490 4167 2.362397 TGTAGACGGAGCAAGATCATCC 59.638 50.000 0.00 0.00 0.00 3.51
2491 4168 3.181486 TGTGTAGACGGAGCAAGATCATC 60.181 47.826 0.00 0.00 0.00 2.92
2492 4169 2.760650 TGTGTAGACGGAGCAAGATCAT 59.239 45.455 0.00 0.00 0.00 2.45
2493 4170 2.167662 TGTGTAGACGGAGCAAGATCA 58.832 47.619 0.00 0.00 0.00 2.92
2494 4171 2.941453 TGTGTAGACGGAGCAAGATC 57.059 50.000 0.00 0.00 0.00 2.75
2495 4172 3.258372 TCTTTGTGTAGACGGAGCAAGAT 59.742 43.478 0.00 0.00 0.00 2.40
2496 4173 2.626266 TCTTTGTGTAGACGGAGCAAGA 59.374 45.455 0.00 0.00 0.00 3.02
2497 4174 2.989840 CTCTTTGTGTAGACGGAGCAAG 59.010 50.000 0.00 0.00 0.00 4.01
2498 4175 2.626266 TCTCTTTGTGTAGACGGAGCAA 59.374 45.455 0.00 0.00 0.00 3.91
2499 4176 2.229062 CTCTCTTTGTGTAGACGGAGCA 59.771 50.000 0.00 0.00 0.00 4.26
2500 4177 2.229302 ACTCTCTTTGTGTAGACGGAGC 59.771 50.000 0.00 0.00 0.00 4.70
2501 4178 3.502595 TCACTCTCTTTGTGTAGACGGAG 59.497 47.826 0.00 0.00 36.83 4.63
2502 4179 3.483421 TCACTCTCTTTGTGTAGACGGA 58.517 45.455 0.00 0.00 36.83 4.69
2503 4180 3.917329 TCACTCTCTTTGTGTAGACGG 57.083 47.619 0.00 0.00 36.83 4.79
2504 4181 4.912766 GTCTTCACTCTCTTTGTGTAGACG 59.087 45.833 14.38 0.00 45.49 4.18
2506 4183 4.893524 TGGTCTTCACTCTCTTTGTGTAGA 59.106 41.667 0.00 0.00 38.74 2.59
2507 4184 5.201713 TGGTCTTCACTCTCTTTGTGTAG 57.798 43.478 0.00 0.00 36.83 2.74
2508 4185 5.601662 CTTGGTCTTCACTCTCTTTGTGTA 58.398 41.667 0.00 0.00 36.83 2.90
2509 4186 4.446371 CTTGGTCTTCACTCTCTTTGTGT 58.554 43.478 0.00 0.00 36.83 3.72
2510 4187 3.249559 GCTTGGTCTTCACTCTCTTTGTG 59.750 47.826 0.00 0.00 36.82 3.33
2511 4188 3.471680 GCTTGGTCTTCACTCTCTTTGT 58.528 45.455 0.00 0.00 0.00 2.83
2512 4189 2.810852 GGCTTGGTCTTCACTCTCTTTG 59.189 50.000 0.00 0.00 0.00 2.77
2513 4190 2.224646 GGGCTTGGTCTTCACTCTCTTT 60.225 50.000 0.00 0.00 0.00 2.52
2514 4191 1.349357 GGGCTTGGTCTTCACTCTCTT 59.651 52.381 0.00 0.00 0.00 2.85
2515 4192 0.980423 GGGCTTGGTCTTCACTCTCT 59.020 55.000 0.00 0.00 0.00 3.10
2516 4193 0.035915 GGGGCTTGGTCTTCACTCTC 60.036 60.000 0.00 0.00 0.00 3.20
2517 4194 0.474660 AGGGGCTTGGTCTTCACTCT 60.475 55.000 0.00 0.00 0.00 3.24
2518 4195 0.035915 GAGGGGCTTGGTCTTCACTC 60.036 60.000 0.00 0.00 0.00 3.51
2519 4196 1.831652 CGAGGGGCTTGGTCTTCACT 61.832 60.000 0.00 0.00 0.00 3.41
2520 4197 1.376037 CGAGGGGCTTGGTCTTCAC 60.376 63.158 0.00 0.00 0.00 3.18
2521 4198 3.068881 CGAGGGGCTTGGTCTTCA 58.931 61.111 0.00 0.00 0.00 3.02
2522 4199 2.436824 GCGAGGGGCTTGGTCTTC 60.437 66.667 0.00 0.00 39.11 2.87
2531 4208 2.102588 TGTATCTAGAAAAGCGAGGGGC 59.897 50.000 0.00 0.00 44.05 5.80
2532 4209 4.120589 GTTGTATCTAGAAAAGCGAGGGG 58.879 47.826 0.00 0.00 0.00 4.79
2533 4210 4.755411 TGTTGTATCTAGAAAAGCGAGGG 58.245 43.478 0.00 0.00 0.00 4.30
2534 4211 7.203910 AGTATGTTGTATCTAGAAAAGCGAGG 58.796 38.462 0.00 0.00 0.00 4.63
2535 4212 8.635877 AAGTATGTTGTATCTAGAAAAGCGAG 57.364 34.615 0.00 0.00 0.00 5.03
2536 4213 8.869897 CAAAGTATGTTGTATCTAGAAAAGCGA 58.130 33.333 0.00 0.00 0.00 4.93
2537 4214 7.636359 GCAAAGTATGTTGTATCTAGAAAAGCG 59.364 37.037 0.00 0.00 0.00 4.68
2538 4215 8.450964 TGCAAAGTATGTTGTATCTAGAAAAGC 58.549 33.333 0.00 0.00 0.00 3.51
2547 4224 9.289303 CCTACAAATTGCAAAGTATGTTGTATC 57.711 33.333 1.71 0.00 0.00 2.24
2548 4225 8.802267 ACCTACAAATTGCAAAGTATGTTGTAT 58.198 29.630 1.71 0.00 0.00 2.29
2549 4226 8.172352 ACCTACAAATTGCAAAGTATGTTGTA 57.828 30.769 1.71 10.27 0.00 2.41
2550 4227 7.049799 ACCTACAAATTGCAAAGTATGTTGT 57.950 32.000 1.71 9.70 0.00 3.32
2551 4228 7.273381 GCTACCTACAAATTGCAAAGTATGTTG 59.727 37.037 1.71 11.47 0.00 3.33
2552 4229 7.176690 AGCTACCTACAAATTGCAAAGTATGTT 59.823 33.333 1.71 0.00 0.00 2.71
2553 4230 6.659242 AGCTACCTACAAATTGCAAAGTATGT 59.341 34.615 1.71 12.06 0.00 2.29
2554 4231 7.088589 AGCTACCTACAAATTGCAAAGTATG 57.911 36.000 1.71 6.97 0.00 2.39
2555 4232 6.318900 GGAGCTACCTACAAATTGCAAAGTAT 59.681 38.462 1.71 0.00 35.41 2.12
2556 4233 5.646360 GGAGCTACCTACAAATTGCAAAGTA 59.354 40.000 1.71 6.42 35.41 2.24
2557 4234 4.459337 GGAGCTACCTACAAATTGCAAAGT 59.541 41.667 1.71 5.48 35.41 2.66
2558 4235 4.142381 GGGAGCTACCTACAAATTGCAAAG 60.142 45.833 8.12 0.00 38.98 2.77
2559 4236 3.761752 GGGAGCTACCTACAAATTGCAAA 59.238 43.478 8.12 0.00 38.98 3.68
2560 4237 3.245087 TGGGAGCTACCTACAAATTGCAA 60.245 43.478 18.18 0.00 38.98 4.08
2561 4238 2.307392 TGGGAGCTACCTACAAATTGCA 59.693 45.455 18.18 0.00 38.98 4.08
2562 4239 2.999331 TGGGAGCTACCTACAAATTGC 58.001 47.619 18.18 0.00 38.98 3.56
2563 4240 5.888161 AGAAATGGGAGCTACCTACAAATTG 59.112 40.000 18.18 0.00 38.98 2.32
2564 4241 6.079712 AGAAATGGGAGCTACCTACAAATT 57.920 37.500 18.18 3.85 38.98 1.82
2565 4242 5.398012 GGAGAAATGGGAGCTACCTACAAAT 60.398 44.000 18.18 0.00 38.98 2.32
2566 4243 4.080526 GGAGAAATGGGAGCTACCTACAAA 60.081 45.833 18.18 0.00 38.98 2.83
2567 4244 3.454812 GGAGAAATGGGAGCTACCTACAA 59.545 47.826 18.18 0.00 38.98 2.41
2568 4245 3.039011 GGAGAAATGGGAGCTACCTACA 58.961 50.000 18.18 0.00 38.98 2.74
2569 4246 2.369203 GGGAGAAATGGGAGCTACCTAC 59.631 54.545 18.18 4.88 38.98 3.18
2570 4247 2.250273 AGGGAGAAATGGGAGCTACCTA 59.750 50.000 18.18 2.63 41.21 3.08
2571 4248 1.010170 AGGGAGAAATGGGAGCTACCT 59.990 52.381 18.18 0.00 38.17 3.08
2572 4249 1.141858 CAGGGAGAAATGGGAGCTACC 59.858 57.143 8.55 8.55 32.54 3.18
2573 4250 1.840635 ACAGGGAGAAATGGGAGCTAC 59.159 52.381 0.00 0.00 0.00 3.58
2574 4251 2.270434 ACAGGGAGAAATGGGAGCTA 57.730 50.000 0.00 0.00 0.00 3.32
2575 4252 2.270434 TACAGGGAGAAATGGGAGCT 57.730 50.000 0.00 0.00 0.00 4.09
2576 4253 4.323868 GGATATACAGGGAGAAATGGGAGC 60.324 50.000 0.00 0.00 0.00 4.70
2577 4254 4.226168 GGGATATACAGGGAGAAATGGGAG 59.774 50.000 0.00 0.00 0.00 4.30
2578 4255 4.175962 GGGATATACAGGGAGAAATGGGA 58.824 47.826 0.00 0.00 0.00 4.37
2579 4256 3.267031 GGGGATATACAGGGAGAAATGGG 59.733 52.174 0.00 0.00 0.00 4.00
2580 4257 4.018960 CAGGGGATATACAGGGAGAAATGG 60.019 50.000 0.00 0.00 0.00 3.16
2581 4258 4.599241 ACAGGGGATATACAGGGAGAAATG 59.401 45.833 0.00 0.00 0.00 2.32
2582 4259 4.844348 ACAGGGGATATACAGGGAGAAAT 58.156 43.478 0.00 0.00 0.00 2.17
2583 4260 4.077982 AGACAGGGGATATACAGGGAGAAA 60.078 45.833 0.00 0.00 0.00 2.52
2584 4261 3.471306 AGACAGGGGATATACAGGGAGAA 59.529 47.826 0.00 0.00 0.00 2.87
2585 4262 3.072086 AGACAGGGGATATACAGGGAGA 58.928 50.000 0.00 0.00 0.00 3.71
2586 4263 3.551635 AGACAGGGGATATACAGGGAG 57.448 52.381 0.00 0.00 0.00 4.30
2587 4264 4.295905 AAAGACAGGGGATATACAGGGA 57.704 45.455 0.00 0.00 0.00 4.20


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.