Multiple sequence alignment - TraesCS2D01G011800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2D01G011800 chr2D 100.000 5394 0 0 1 5394 5685587 5680194 0.000000e+00 9961.0
1 TraesCS2D01G011800 chr2D 84.417 815 77 27 2214 2992 5710640 5709840 0.000000e+00 756.0
2 TraesCS2D01G011800 chr2D 81.686 759 91 24 3075 3825 5709684 5708966 6.020000e-164 588.0
3 TraesCS2D01G011800 chr2D 77.830 424 55 21 717 1135 5712490 5712101 5.440000e-55 226.0
4 TraesCS2D01G011800 chr2D 85.484 62 8 1 3844 3905 5708928 5708868 4.510000e-06 63.9
5 TraesCS2D01G011800 chr2A 89.235 2471 156 45 2214 4631 4170421 4168008 0.000000e+00 2988.0
6 TraesCS2D01G011800 chr2A 96.034 933 22 7 685 1602 4172070 4171138 0.000000e+00 1504.0
7 TraesCS2D01G011800 chr2A 93.798 645 32 7 1576 2215 4171137 4170496 0.000000e+00 963.0
8 TraesCS2D01G011800 chr2A 84.749 577 35 17 4854 5394 4167762 4167203 3.700000e-146 529.0
9 TraesCS2D01G011800 chr2A 96.220 291 10 1 3036 3326 4204447 4204158 4.890000e-130 475.0
10 TraesCS2D01G011800 chr2A 90.312 320 11 5 224 524 4172355 4172037 8.420000e-108 401.0
11 TraesCS2D01G011800 chr2A 91.176 204 13 4 4633 4831 4167956 4167753 6.880000e-69 272.0
12 TraesCS2D01G011800 chr2A 95.902 122 4 1 3 124 4172537 4172417 4.260000e-46 196.0
13 TraesCS2D01G011800 chr2A 89.908 109 4 3 865 971 4172193 4172090 3.390000e-27 134.0
14 TraesCS2D01G011800 chr2A 97.872 47 0 1 178 224 4172419 4172374 4.480000e-11 80.5
15 TraesCS2D01G011800 chr2B 93.822 1473 65 13 751 2215 5677881 5679335 0.000000e+00 2193.0
16 TraesCS2D01G011800 chr2B 94.843 1338 58 6 2577 3907 5679802 5681135 0.000000e+00 2078.0
17 TraesCS2D01G011800 chr2B 92.029 690 41 5 3905 4587 5681294 5681976 0.000000e+00 957.0
18 TraesCS2D01G011800 chr2B 95.778 379 10 3 2214 2587 5679402 5679779 1.660000e-169 606.0
19 TraesCS2D01G011800 chr2B 96.000 75 3 0 4851 4925 5682096 5682170 7.340000e-24 122.0
20 TraesCS2D01G011800 chr2B 97.619 42 0 1 313 354 556849503 556849463 2.700000e-08 71.3
21 TraesCS2D01G011800 chr2B 93.478 46 1 1 314 359 526522494 526522537 3.490000e-07 67.6
22 TraesCS2D01G011800 chr6D 86.122 526 73 0 997 1522 351141839 351141314 7.840000e-158 568.0
23 TraesCS2D01G011800 chr6B 85.932 526 74 0 997 1522 528281972 528282497 3.650000e-156 562.0
24 TraesCS2D01G011800 chr6B 82.495 457 58 13 2910 3347 528282963 528283416 1.100000e-101 381.0
25 TraesCS2D01G011800 chr6A 85.502 538 75 3 985 1522 492280044 492280578 4.720000e-155 558.0
26 TraesCS2D01G011800 chr6A 85.799 338 44 4 3018 3354 492281130 492281464 6.640000e-94 355.0
27 TraesCS2D01G011800 chr6A 90.385 52 4 1 316 367 617575664 617575614 3.490000e-07 67.6
28 TraesCS2D01G011800 chr6A 88.679 53 5 1 313 365 126492881 126492830 4.510000e-06 63.9
29 TraesCS2D01G011800 chr7B 97.778 45 0 1 313 357 219500745 219500702 5.790000e-10 76.8
30 TraesCS2D01G011800 chr5B 97.619 42 0 1 312 353 185030298 185030338 2.700000e-08 71.3
31 TraesCS2D01G011800 chrUn 97.561 41 0 1 314 354 36514163 36514202 9.690000e-08 69.4
32 TraesCS2D01G011800 chr3D 95.349 43 1 1 312 354 351116802 351116761 3.490000e-07 67.6


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2D01G011800 chr2D 5680194 5685587 5393 True 9961.000000 9961 100.000000 1 5394 1 chr2D.!!$R1 5393
1 TraesCS2D01G011800 chr2D 5708868 5712490 3622 True 408.475000 756 82.354250 717 3905 4 chr2D.!!$R2 3188
2 TraesCS2D01G011800 chr2A 4167203 4172537 5334 True 785.277778 2988 92.109556 3 5394 9 chr2A.!!$R2 5391
3 TraesCS2D01G011800 chr2B 5677881 5682170 4289 False 1191.200000 2193 94.494400 751 4925 5 chr2B.!!$F2 4174
4 TraesCS2D01G011800 chr6D 351141314 351141839 525 True 568.000000 568 86.122000 997 1522 1 chr6D.!!$R1 525
5 TraesCS2D01G011800 chr6B 528281972 528283416 1444 False 471.500000 562 84.213500 997 3347 2 chr6B.!!$F1 2350
6 TraesCS2D01G011800 chr6A 492280044 492281464 1420 False 456.500000 558 85.650500 985 3354 2 chr6A.!!$F1 2369

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
135 136 0.036388 CCTCGCTTAGGGCAACTGAA 60.036 55.000 0.0 0.0 42.32 3.02 F
141 142 0.110295 TTAGGGCAACTGAAGCAGCA 59.890 50.000 0.0 0.0 34.37 4.41 F
696 735 0.177141 CATGCCAGCCCCTGAAATTG 59.823 55.000 0.0 0.0 32.44 2.32 F
699 738 0.324275 GCCAGCCCCTGAAATTGGTA 60.324 55.000 0.0 0.0 32.44 3.25 F
700 739 1.689258 GCCAGCCCCTGAAATTGGTAT 60.689 52.381 0.0 0.0 32.44 2.73 F
1140 1199 1.920325 CTTCCTGGGGCAGACTCCA 60.920 63.158 0.0 0.0 32.44 3.86 F
1763 2905 3.570125 CAGATTATGGCTGAGACGTAGGA 59.430 47.826 0.0 0.0 35.39 2.94 F
3251 4723 4.083271 GCATAGAGCTTCTTTCAACCGTTT 60.083 41.667 0.0 0.0 41.15 3.60 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1751 2893 5.955488 TCTTCTTTTCATCCTACGTCTCAG 58.045 41.667 0.00 0.0 0.00 3.35 R
1916 3061 6.090483 TGAGTTCTGAAGGAAAGTACTGAG 57.910 41.667 0.00 0.0 35.51 3.35 R
2495 3805 2.208132 ATTTACCGTGATGCACCCAA 57.792 45.000 0.00 0.0 0.00 4.12 R
2728 4078 7.064064 CAGAAAAGTGAGAAGCGTAAAGTAAC 58.936 38.462 0.00 0.0 0.00 2.50 R
2779 4129 9.807921 ACAAATTATCACTCTTCCCTTCTAAAA 57.192 29.630 0.00 0.0 0.00 1.52 R
2811 4162 4.142182 ACCATGAAGCCGTGAAAAATATGG 60.142 41.667 0.00 0.0 38.71 2.74 R
3288 4760 2.706190 AGGAAGCTACACAAAGTCCAGT 59.294 45.455 0.00 0.0 0.00 4.00 R
4561 6238 0.179250 CTGATCAACGCGACAAACCG 60.179 55.000 15.93 0.0 0.00 4.44 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
25 26 5.173774 TGCACTCTGTTCAAATTTGACTC 57.826 39.130 20.35 15.87 36.83 3.36
56 57 1.615392 CTCTTGTCTTGGGCCCTTTTG 59.385 52.381 25.70 10.39 0.00 2.44
57 58 1.063266 TCTTGTCTTGGGCCCTTTTGT 60.063 47.619 25.70 0.00 0.00 2.83
59 60 0.555769 TGTCTTGGGCCCTTTTGTCT 59.444 50.000 25.70 0.00 0.00 3.41
110 111 3.969553 AGCACCACAGAGTCTATGACTA 58.030 45.455 0.00 0.00 43.53 2.59
121 122 2.809696 GTCTATGACTACTCCTCCTCGC 59.190 54.545 0.00 0.00 0.00 5.03
124 125 3.579534 ATGACTACTCCTCCTCGCTTA 57.420 47.619 0.00 0.00 0.00 3.09
127 128 1.133730 ACTACTCCTCCTCGCTTAGGG 60.134 57.143 2.44 0.00 46.55 3.53
128 129 0.467659 TACTCCTCCTCGCTTAGGGC 60.468 60.000 2.44 0.00 46.55 5.19
129 130 1.758514 CTCCTCCTCGCTTAGGGCA 60.759 63.158 2.44 0.00 46.55 5.36
130 131 1.305802 TCCTCCTCGCTTAGGGCAA 60.306 57.895 2.44 0.00 46.55 4.52
131 132 1.153349 CCTCCTCGCTTAGGGCAAC 60.153 63.158 2.44 0.00 46.55 4.17
132 133 1.617947 CCTCCTCGCTTAGGGCAACT 61.618 60.000 2.44 0.00 46.55 3.16
133 134 0.460987 CTCCTCGCTTAGGGCAACTG 60.461 60.000 2.44 0.00 46.55 3.16
134 135 0.902984 TCCTCGCTTAGGGCAACTGA 60.903 55.000 2.44 0.00 46.55 3.41
135 136 0.036388 CCTCGCTTAGGGCAACTGAA 60.036 55.000 0.00 0.00 42.32 3.02
136 137 1.363744 CTCGCTTAGGGCAACTGAAG 58.636 55.000 0.00 0.00 41.91 3.02
137 138 0.673644 TCGCTTAGGGCAACTGAAGC 60.674 55.000 0.00 0.00 45.15 3.86
138 139 2.946947 GCTTAGGGCAACTGAAGCA 58.053 52.632 0.76 0.00 46.70 3.91
139 140 0.807496 GCTTAGGGCAACTGAAGCAG 59.193 55.000 0.76 0.00 46.70 4.24
140 141 0.807496 CTTAGGGCAACTGAAGCAGC 59.193 55.000 0.00 0.00 34.37 5.25
141 142 0.110295 TTAGGGCAACTGAAGCAGCA 59.890 50.000 0.00 0.00 34.37 4.41
142 143 0.321919 TAGGGCAACTGAAGCAGCAG 60.322 55.000 0.00 4.50 41.63 4.24
143 144 1.601759 GGGCAACTGAAGCAGCAGA 60.602 57.895 12.11 0.00 39.20 4.26
144 145 1.584380 GGGCAACTGAAGCAGCAGAG 61.584 60.000 12.11 5.95 39.20 3.35
145 146 1.584380 GGCAACTGAAGCAGCAGAGG 61.584 60.000 12.11 5.35 39.20 3.69
146 147 1.874562 CAACTGAAGCAGCAGAGGC 59.125 57.895 12.11 0.00 39.20 4.70
147 148 1.303155 AACTGAAGCAGCAGAGGCC 60.303 57.895 12.11 0.00 42.56 5.19
148 149 2.818714 CTGAAGCAGCAGAGGCCG 60.819 66.667 0.00 0.00 42.56 6.13
149 150 4.399395 TGAAGCAGCAGAGGCCGG 62.399 66.667 0.00 0.00 42.56 6.13
150 151 4.087892 GAAGCAGCAGAGGCCGGA 62.088 66.667 5.05 0.00 42.56 5.14
151 152 4.093291 AAGCAGCAGAGGCCGGAG 62.093 66.667 5.05 0.00 42.56 4.63
173 174 5.497464 GGGATTCCCTCATTTTTCCAAAA 57.503 39.130 14.98 0.00 41.34 2.44
174 175 5.875224 GGGATTCCCTCATTTTTCCAAAAA 58.125 37.500 14.98 0.00 41.34 1.94
175 176 5.705441 GGGATTCCCTCATTTTTCCAAAAAC 59.295 40.000 14.98 0.00 41.34 2.43
176 177 6.295249 GGATTCCCTCATTTTTCCAAAAACA 58.705 36.000 0.00 0.00 40.33 2.83
177 178 6.427853 GGATTCCCTCATTTTTCCAAAAACAG 59.572 38.462 0.00 0.25 40.33 3.16
178 179 5.948742 TCCCTCATTTTTCCAAAAACAGT 57.051 34.783 0.00 0.00 40.33 3.55
179 180 6.306643 TCCCTCATTTTTCCAAAAACAGTT 57.693 33.333 0.00 0.00 40.33 3.16
180 181 6.716284 TCCCTCATTTTTCCAAAAACAGTTT 58.284 32.000 0.00 0.00 40.33 2.66
181 182 6.597280 TCCCTCATTTTTCCAAAAACAGTTTG 59.403 34.615 0.00 0.00 40.33 2.93
182 183 6.374053 CCCTCATTTTTCCAAAAACAGTTTGT 59.626 34.615 0.00 0.00 40.33 2.83
183 184 7.413988 CCCTCATTTTTCCAAAAACAGTTTGTC 60.414 37.037 0.00 0.00 40.33 3.18
184 185 7.334171 CCTCATTTTTCCAAAAACAGTTTGTCT 59.666 33.333 0.00 0.00 40.33 3.41
317 350 2.389713 GCTGCAGCACATAATTACCG 57.610 50.000 33.36 0.00 41.59 4.02
318 351 1.939934 GCTGCAGCACATAATTACCGA 59.060 47.619 33.36 0.00 41.59 4.69
319 352 2.354510 GCTGCAGCACATAATTACCGAA 59.645 45.455 33.36 0.00 41.59 4.30
361 394 6.563222 TTTATATATAAAGCAACACGGCCC 57.437 37.500 12.90 0.00 0.00 5.80
363 396 2.201921 TATAAAGCAACACGGCCCAA 57.798 45.000 0.00 0.00 0.00 4.12
398 431 0.976641 GACAGACACAGGTCATGGGA 59.023 55.000 0.00 0.00 46.80 4.37
417 450 4.586421 TGGGATTGCACAAGTTTGACATTA 59.414 37.500 0.00 0.00 0.00 1.90
476 515 7.954835 TCTTGTGTTGATGATGAAAAGGATTT 58.045 30.769 0.00 0.00 42.41 2.17
488 527 4.825085 TGAAAAGGATTTGTCTTTACGCCT 59.175 37.500 0.00 0.00 39.02 5.52
524 563 3.705072 GGTACCCTCATTGTACTACTGCT 59.295 47.826 0.00 0.00 38.84 4.24
525 564 4.891756 GGTACCCTCATTGTACTACTGCTA 59.108 45.833 0.00 0.00 38.84 3.49
526 565 5.009811 GGTACCCTCATTGTACTACTGCTAG 59.990 48.000 0.00 0.00 38.84 3.42
527 566 3.961408 ACCCTCATTGTACTACTGCTAGG 59.039 47.826 0.00 0.00 0.00 3.02
528 567 3.961408 CCCTCATTGTACTACTGCTAGGT 59.039 47.826 0.00 0.00 0.00 3.08
529 568 5.138276 CCCTCATTGTACTACTGCTAGGTA 58.862 45.833 0.00 0.00 0.00 3.08
530 569 5.241949 CCCTCATTGTACTACTGCTAGGTAG 59.758 48.000 5.02 5.02 43.27 3.18
544 583 4.727507 CTAGGTAGCACATGTCTTGACT 57.272 45.455 0.00 0.00 0.00 3.41
545 584 3.325293 AGGTAGCACATGTCTTGACTG 57.675 47.619 0.00 1.52 0.00 3.51
546 585 2.634940 AGGTAGCACATGTCTTGACTGT 59.365 45.455 0.00 2.08 0.00 3.55
547 586 3.071602 AGGTAGCACATGTCTTGACTGTT 59.928 43.478 0.00 0.00 0.00 3.16
548 587 3.433615 GGTAGCACATGTCTTGACTGTTC 59.566 47.826 0.00 0.19 0.00 3.18
549 588 3.198409 AGCACATGTCTTGACTGTTCA 57.802 42.857 0.00 0.00 0.00 3.18
550 589 3.544684 AGCACATGTCTTGACTGTTCAA 58.455 40.909 0.00 0.00 39.55 2.69
551 590 3.947196 AGCACATGTCTTGACTGTTCAAA 59.053 39.130 0.00 0.00 41.34 2.69
552 591 4.581824 AGCACATGTCTTGACTGTTCAAAT 59.418 37.500 0.00 0.00 41.34 2.32
553 592 5.068198 AGCACATGTCTTGACTGTTCAAATT 59.932 36.000 0.00 0.00 41.34 1.82
554 593 5.750067 GCACATGTCTTGACTGTTCAAATTT 59.250 36.000 0.00 0.00 41.34 1.82
555 594 6.291955 GCACATGTCTTGACTGTTCAAATTTG 60.292 38.462 12.15 12.15 41.34 2.32
556 595 6.974048 CACATGTCTTGACTGTTCAAATTTGA 59.026 34.615 16.91 16.91 41.34 2.69
557 596 7.488792 CACATGTCTTGACTGTTCAAATTTGAA 59.511 33.333 26.01 26.01 41.34 2.69
572 611 9.950680 TTCAAATTTGAAACTGTGAATCTAGTC 57.049 29.630 27.22 0.00 43.62 2.59
573 612 8.567948 TCAAATTTGAAACTGTGAATCTAGTCC 58.432 33.333 18.45 0.00 33.55 3.85
574 613 8.352201 CAAATTTGAAACTGTGAATCTAGTCCA 58.648 33.333 13.08 0.00 0.00 4.02
575 614 7.678947 ATTTGAAACTGTGAATCTAGTCCAG 57.321 36.000 0.00 0.00 0.00 3.86
576 615 6.419484 TTGAAACTGTGAATCTAGTCCAGA 57.581 37.500 0.00 0.00 37.79 3.86
577 616 6.611613 TGAAACTGTGAATCTAGTCCAGAT 57.388 37.500 0.00 0.00 46.48 2.90
578 617 6.401394 TGAAACTGTGAATCTAGTCCAGATG 58.599 40.000 0.00 0.00 43.56 2.90
579 618 6.014242 TGAAACTGTGAATCTAGTCCAGATGT 60.014 38.462 0.00 0.00 43.56 3.06
580 619 7.178451 TGAAACTGTGAATCTAGTCCAGATGTA 59.822 37.037 0.00 0.00 43.56 2.29
581 620 6.458232 ACTGTGAATCTAGTCCAGATGTAC 57.542 41.667 0.00 0.00 43.56 2.90
582 621 6.191315 ACTGTGAATCTAGTCCAGATGTACT 58.809 40.000 0.00 0.00 43.56 2.73
583 622 6.096141 ACTGTGAATCTAGTCCAGATGTACTG 59.904 42.308 0.00 0.00 43.56 2.74
584 623 5.952347 TGTGAATCTAGTCCAGATGTACTGT 59.048 40.000 0.00 0.00 43.56 3.55
585 624 6.127619 TGTGAATCTAGTCCAGATGTACTGTG 60.128 42.308 0.00 0.00 43.56 3.66
586 625 4.927978 ATCTAGTCCAGATGTACTGTGC 57.072 45.455 0.00 0.00 42.69 4.57
587 626 3.024547 TCTAGTCCAGATGTACTGTGCC 58.975 50.000 0.00 0.00 44.40 5.01
588 627 1.944177 AGTCCAGATGTACTGTGCCT 58.056 50.000 0.00 0.00 44.40 4.75
589 628 1.552337 AGTCCAGATGTACTGTGCCTG 59.448 52.381 0.00 0.00 44.40 4.85
590 629 1.550524 GTCCAGATGTACTGTGCCTGA 59.449 52.381 4.28 0.00 44.40 3.86
591 630 1.550524 TCCAGATGTACTGTGCCTGAC 59.449 52.381 4.28 0.00 44.40 3.51
592 631 1.276138 CCAGATGTACTGTGCCTGACA 59.724 52.381 4.28 0.00 44.40 3.58
598 637 2.029518 CTGTGCCTGACAGCGTGA 59.970 61.111 0.00 0.00 45.72 4.35
599 638 1.375140 CTGTGCCTGACAGCGTGAT 60.375 57.895 0.00 0.00 45.72 3.06
600 639 0.952497 CTGTGCCTGACAGCGTGATT 60.952 55.000 0.00 0.00 45.72 2.57
601 640 1.229975 TGTGCCTGACAGCGTGATTG 61.230 55.000 0.00 0.00 34.65 2.67
602 641 1.071299 TGCCTGACAGCGTGATTGT 59.929 52.632 0.00 0.00 34.65 2.71
603 642 0.534877 TGCCTGACAGCGTGATTGTT 60.535 50.000 0.00 0.00 34.65 2.83
604 643 0.593128 GCCTGACAGCGTGATTGTTT 59.407 50.000 0.00 0.00 0.00 2.83
605 644 1.001378 GCCTGACAGCGTGATTGTTTT 60.001 47.619 0.00 0.00 0.00 2.43
606 645 2.918131 GCCTGACAGCGTGATTGTTTTC 60.918 50.000 0.00 0.00 0.00 2.29
607 646 2.563976 CTGACAGCGTGATTGTTTTCG 58.436 47.619 0.00 0.00 0.00 3.46
608 647 1.937223 TGACAGCGTGATTGTTTTCGT 59.063 42.857 0.00 0.00 0.00 3.85
609 648 2.033236 TGACAGCGTGATTGTTTTCGTC 60.033 45.455 0.00 0.00 0.00 4.20
610 649 2.210116 ACAGCGTGATTGTTTTCGTCT 58.790 42.857 0.00 0.00 0.00 4.18
611 650 3.386486 ACAGCGTGATTGTTTTCGTCTA 58.614 40.909 0.00 0.00 0.00 2.59
612 651 3.428870 ACAGCGTGATTGTTTTCGTCTAG 59.571 43.478 0.00 0.00 0.00 2.43
613 652 2.993899 AGCGTGATTGTTTTCGTCTAGG 59.006 45.455 0.00 0.00 0.00 3.02
614 653 2.735134 GCGTGATTGTTTTCGTCTAGGT 59.265 45.455 0.00 0.00 0.00 3.08
615 654 3.922240 GCGTGATTGTTTTCGTCTAGGTA 59.078 43.478 0.00 0.00 0.00 3.08
616 655 4.031426 GCGTGATTGTTTTCGTCTAGGTAG 59.969 45.833 0.00 0.00 0.00 3.18
617 656 4.031426 CGTGATTGTTTTCGTCTAGGTAGC 59.969 45.833 0.00 0.00 0.00 3.58
618 657 4.927425 GTGATTGTTTTCGTCTAGGTAGCA 59.073 41.667 0.00 0.00 0.00 3.49
619 658 4.927425 TGATTGTTTTCGTCTAGGTAGCAC 59.073 41.667 0.00 0.00 0.00 4.40
620 659 3.308438 TGTTTTCGTCTAGGTAGCACC 57.692 47.619 0.00 0.00 38.99 5.01
621 660 2.257034 GTTTTCGTCTAGGTAGCACCG 58.743 52.381 0.00 0.00 44.90 4.94
622 661 1.538047 TTTCGTCTAGGTAGCACCGT 58.462 50.000 0.00 0.00 44.90 4.83
623 662 1.538047 TTCGTCTAGGTAGCACCGTT 58.462 50.000 0.00 0.00 44.90 4.44
624 663 2.401583 TCGTCTAGGTAGCACCGTTA 57.598 50.000 0.00 0.00 44.90 3.18
625 664 2.923121 TCGTCTAGGTAGCACCGTTAT 58.077 47.619 0.00 0.00 44.90 1.89
626 665 3.282021 TCGTCTAGGTAGCACCGTTATT 58.718 45.455 0.00 0.00 44.90 1.40
627 666 3.065786 TCGTCTAGGTAGCACCGTTATTG 59.934 47.826 0.00 0.00 44.90 1.90
628 667 3.121544 GTCTAGGTAGCACCGTTATTGC 58.878 50.000 0.00 0.00 44.90 3.56
629 668 2.101917 TCTAGGTAGCACCGTTATTGCC 59.898 50.000 0.00 0.00 44.90 4.52
630 669 0.616371 AGGTAGCACCGTTATTGCCA 59.384 50.000 0.00 0.00 44.90 4.92
631 670 1.003812 AGGTAGCACCGTTATTGCCAA 59.996 47.619 0.00 0.00 44.90 4.52
632 671 1.400494 GGTAGCACCGTTATTGCCAAG 59.600 52.381 0.00 0.00 41.18 3.61
633 672 2.081462 GTAGCACCGTTATTGCCAAGT 58.919 47.619 0.00 0.00 41.18 3.16
634 673 2.483014 AGCACCGTTATTGCCAAGTA 57.517 45.000 0.00 0.00 41.18 2.24
635 674 2.356135 AGCACCGTTATTGCCAAGTAG 58.644 47.619 0.00 0.00 41.18 2.57
636 675 1.202143 GCACCGTTATTGCCAAGTAGC 60.202 52.381 0.00 0.00 33.58 3.58
637 676 2.080693 CACCGTTATTGCCAAGTAGCA 58.919 47.619 0.00 0.00 42.17 3.49
646 685 2.910199 TGCCAAGTAGCAATGCTAGAG 58.090 47.619 16.10 8.22 42.11 2.43
647 686 2.216898 GCCAAGTAGCAATGCTAGAGG 58.783 52.381 16.10 17.21 42.11 3.69
648 687 2.216898 CCAAGTAGCAATGCTAGAGGC 58.783 52.381 16.10 3.81 42.11 4.70
661 700 3.330267 GCTAGAGGCATCTTATTTCCCG 58.670 50.000 6.05 0.00 41.35 5.14
662 701 3.006967 GCTAGAGGCATCTTATTTCCCGA 59.993 47.826 6.05 0.00 41.35 5.14
663 702 4.503296 GCTAGAGGCATCTTATTTCCCGAA 60.503 45.833 6.05 0.00 41.35 4.30
664 703 4.503714 AGAGGCATCTTATTTCCCGAAA 57.496 40.909 0.00 0.00 28.57 3.46
665 704 5.053978 AGAGGCATCTTATTTCCCGAAAT 57.946 39.130 0.00 7.74 42.95 2.17
666 705 5.066593 AGAGGCATCTTATTTCCCGAAATC 58.933 41.667 5.95 0.00 40.99 2.17
667 706 4.792068 AGGCATCTTATTTCCCGAAATCA 58.208 39.130 5.95 0.00 40.99 2.57
668 707 4.823989 AGGCATCTTATTTCCCGAAATCAG 59.176 41.667 5.95 5.64 40.99 2.90
669 708 4.580580 GGCATCTTATTTCCCGAAATCAGT 59.419 41.667 5.95 0.00 40.99 3.41
670 709 5.067805 GGCATCTTATTTCCCGAAATCAGTT 59.932 40.000 5.95 0.00 40.99 3.16
671 710 6.405842 GGCATCTTATTTCCCGAAATCAGTTT 60.406 38.462 5.95 0.00 40.99 2.66
672 711 7.035612 GCATCTTATTTCCCGAAATCAGTTTT 58.964 34.615 5.95 0.00 40.99 2.43
673 712 7.220875 GCATCTTATTTCCCGAAATCAGTTTTC 59.779 37.037 5.95 0.00 40.99 2.29
674 713 7.153217 TCTTATTTCCCGAAATCAGTTTTCC 57.847 36.000 5.95 0.00 40.60 3.13
675 714 6.946009 TCTTATTTCCCGAAATCAGTTTTCCT 59.054 34.615 5.95 0.00 40.60 3.36
676 715 4.846779 TTTCCCGAAATCAGTTTTCCTG 57.153 40.909 0.00 0.00 40.60 3.86
677 716 2.159382 TCCCGAAATCAGTTTTCCTGC 58.841 47.619 0.00 0.00 40.60 4.85
678 717 1.885887 CCCGAAATCAGTTTTCCTGCA 59.114 47.619 0.00 0.00 40.60 4.41
679 718 2.493278 CCCGAAATCAGTTTTCCTGCAT 59.507 45.455 0.00 0.00 40.60 3.96
680 719 3.504863 CCGAAATCAGTTTTCCTGCATG 58.495 45.455 0.00 0.00 40.60 4.06
681 720 2.919229 CGAAATCAGTTTTCCTGCATGC 59.081 45.455 11.82 11.82 40.60 4.06
682 721 3.256558 GAAATCAGTTTTCCTGCATGCC 58.743 45.455 16.68 0.00 41.25 4.40
683 722 1.927487 ATCAGTTTTCCTGCATGCCA 58.073 45.000 16.68 2.21 41.25 4.92
684 723 1.250328 TCAGTTTTCCTGCATGCCAG 58.750 50.000 16.68 12.32 41.25 4.85
685 724 0.389426 CAGTTTTCCTGCATGCCAGC 60.389 55.000 16.68 0.00 40.36 4.85
686 725 1.079612 GTTTTCCTGCATGCCAGCC 60.080 57.895 16.68 0.00 40.36 4.85
687 726 2.285024 TTTTCCTGCATGCCAGCCC 61.285 57.895 16.68 0.00 40.36 5.19
688 727 4.764771 TTCCTGCATGCCAGCCCC 62.765 66.667 16.68 0.00 40.36 5.80
691 730 4.435970 CTGCATGCCAGCCCCTGA 62.436 66.667 16.68 0.00 34.21 3.86
692 731 3.949885 CTGCATGCCAGCCCCTGAA 62.950 63.158 16.68 0.00 34.21 3.02
693 732 2.681064 GCATGCCAGCCCCTGAAA 60.681 61.111 6.36 0.00 32.44 2.69
694 733 2.062177 GCATGCCAGCCCCTGAAAT 61.062 57.895 6.36 0.00 32.44 2.17
695 734 1.619807 GCATGCCAGCCCCTGAAATT 61.620 55.000 6.36 0.00 32.44 1.82
696 735 0.177141 CATGCCAGCCCCTGAAATTG 59.823 55.000 0.00 0.00 32.44 2.32
697 736 0.979187 ATGCCAGCCCCTGAAATTGG 60.979 55.000 0.00 0.00 32.44 3.16
698 737 1.610379 GCCAGCCCCTGAAATTGGT 60.610 57.895 0.00 0.00 32.44 3.67
699 738 0.324275 GCCAGCCCCTGAAATTGGTA 60.324 55.000 0.00 0.00 32.44 3.25
700 739 1.689258 GCCAGCCCCTGAAATTGGTAT 60.689 52.381 0.00 0.00 32.44 2.73
701 740 2.310538 CCAGCCCCTGAAATTGGTATC 58.689 52.381 0.00 0.00 32.44 2.24
702 741 2.091665 CCAGCCCCTGAAATTGGTATCT 60.092 50.000 0.00 0.00 32.44 1.98
703 742 3.628257 CCAGCCCCTGAAATTGGTATCTT 60.628 47.826 0.00 0.00 32.44 2.40
704 743 3.382546 CAGCCCCTGAAATTGGTATCTTG 59.617 47.826 0.00 0.00 32.44 3.02
705 744 3.269381 AGCCCCTGAAATTGGTATCTTGA 59.731 43.478 0.00 0.00 0.00 3.02
706 745 4.078980 AGCCCCTGAAATTGGTATCTTGAT 60.079 41.667 0.00 0.00 0.00 2.57
707 746 4.651045 GCCCCTGAAATTGGTATCTTGATT 59.349 41.667 0.00 0.00 0.00 2.57
708 747 5.452356 GCCCCTGAAATTGGTATCTTGATTG 60.452 44.000 0.00 0.00 0.00 2.67
709 748 5.658190 CCCCTGAAATTGGTATCTTGATTGT 59.342 40.000 0.00 0.00 0.00 2.71
710 749 6.833416 CCCCTGAAATTGGTATCTTGATTGTA 59.167 38.462 0.00 0.00 0.00 2.41
711 750 7.201821 CCCCTGAAATTGGTATCTTGATTGTAC 60.202 40.741 0.00 0.00 0.00 2.90
712 751 7.557719 CCCTGAAATTGGTATCTTGATTGTACT 59.442 37.037 0.00 0.00 0.00 2.73
713 752 9.613428 CCTGAAATTGGTATCTTGATTGTACTA 57.387 33.333 0.00 0.00 0.00 1.82
789 828 4.462483 TCTGGCCTGTTCAAATTTGATACC 59.538 41.667 21.10 16.80 37.00 2.73
947 988 2.500910 CCATGGCCCTTGCTGAATTTTA 59.499 45.455 0.00 0.00 37.74 1.52
956 997 6.621380 GCCCTTGCTGAATTTTATTTTCTTGC 60.621 38.462 0.00 0.00 33.53 4.01
993 1042 3.006940 TCAGGTGGTTTAATTAGCAGCG 58.993 45.455 4.47 1.45 45.71 5.18
994 1043 3.006940 CAGGTGGTTTAATTAGCAGCGA 58.993 45.455 4.47 0.00 45.71 4.93
995 1044 3.438781 CAGGTGGTTTAATTAGCAGCGAA 59.561 43.478 4.47 0.00 45.71 4.70
1140 1199 1.920325 CTTCCTGGGGCAGACTCCA 60.920 63.158 0.00 0.00 32.44 3.86
1733 2875 3.676873 GCCAGCATGTGATTTTTGGTAGG 60.677 47.826 0.00 0.00 0.00 3.18
1751 2893 5.127194 TGGTAGGATATCGACAGATTATGGC 59.873 44.000 8.25 0.00 38.26 4.40
1763 2905 3.570125 CAGATTATGGCTGAGACGTAGGA 59.430 47.826 0.00 0.00 35.39 2.94
1852 2997 9.449719 AATTACCCAGTTAGAAGAAATACTGTG 57.550 33.333 0.00 0.00 37.01 3.66
1858 3003 9.667107 CCAGTTAGAAGAAATACTGTGGATTTA 57.333 33.333 0.00 0.00 37.01 1.40
1916 3061 8.980143 TTTGGCTACTAGTCAAATAAAAATGC 57.020 30.769 11.13 0.00 44.00 3.56
2110 3260 6.653320 GGTTGTCACCTGAAAACTATATGTCA 59.347 38.462 8.03 0.00 41.04 3.58
2300 3598 9.162764 GAACAAATAGTAGGCACTAAATTCAGA 57.837 33.333 1.85 0.00 45.48 3.27
2751 4101 6.940714 TGTTACTTTACGCTTCTCACTTTTC 58.059 36.000 0.00 0.00 0.00 2.29
2788 4139 9.796120 TGTTTCATACTTTTGTGTTTTAGAAGG 57.204 29.630 0.00 0.00 0.00 3.46
2811 4162 4.142381 GGAAGAGTGATAATTTGTGGTGGC 60.142 45.833 0.00 0.00 0.00 5.01
3251 4723 4.083271 GCATAGAGCTTCTTTCAACCGTTT 60.083 41.667 0.00 0.00 41.15 3.60
3348 4821 5.470047 ACCTTTTGACTGGAGTACACTAG 57.530 43.478 2.16 2.16 0.00 2.57
3537 5026 3.711704 TCTGAAGTTCCACTCTGTTCCTT 59.288 43.478 0.00 0.00 0.00 3.36
3546 5035 7.824779 AGTTCCACTCTGTTCCTTAATATGTTC 59.175 37.037 0.00 0.00 0.00 3.18
3606 5095 6.115446 TCATCTACCATTCCAAGACAACATC 58.885 40.000 0.00 0.00 0.00 3.06
3628 5117 4.330894 TCACTGCAATTTTCTGAGCTATCG 59.669 41.667 0.00 0.00 0.00 2.92
3747 5236 9.181805 CTCATTAATGCTTAATTGAGCTTGATG 57.818 33.333 21.34 20.57 43.11 3.07
3761 5251 4.284378 GCTTGATGCTATGTTCCTTGAC 57.716 45.455 0.00 0.00 38.95 3.18
3907 5416 7.937649 ACTGGTTTGAGGTAGATTTTTGTTAC 58.062 34.615 0.00 0.00 0.00 2.50
3908 5417 7.558444 ACTGGTTTGAGGTAGATTTTTGTTACA 59.442 33.333 0.00 0.00 0.00 2.41
4024 5697 2.274437 CACACCATCCAGAGATTCGTG 58.726 52.381 0.00 0.00 36.72 4.35
4033 5706 0.681564 AGAGATTCGTGGAGACGGCT 60.682 55.000 0.00 0.00 46.11 5.52
4057 5730 0.957395 ACAACGAGGCCATGCTCTTG 60.957 55.000 5.01 3.27 0.00 3.02
4198 5871 0.107508 CGGAACATGAGGATGCCACT 60.108 55.000 0.00 0.00 32.14 4.00
4365 6041 1.610379 GGGCCCAAAAGCAGGACAT 60.610 57.895 19.95 0.00 30.00 3.06
4380 6056 3.944015 CAGGACATGAAGAAAGATGACCC 59.056 47.826 0.00 0.00 35.69 4.46
4468 6145 4.401202 TGGCGTCTGACTGTATTTCATCTA 59.599 41.667 6.21 0.00 0.00 1.98
4481 6158 8.195165 TGTATTTCATCTAGTAGAGGATTGGG 57.805 38.462 14.87 0.00 34.77 4.12
4509 6186 1.111116 AGGGTTCAGGTCGTTCGTCA 61.111 55.000 0.00 0.00 0.00 4.35
4517 6194 4.624015 TCAGGTCGTTCGTCAACTTATTT 58.376 39.130 0.00 0.00 0.00 1.40
4518 6195 4.446385 TCAGGTCGTTCGTCAACTTATTTG 59.554 41.667 0.00 0.00 36.42 2.32
4519 6196 3.185797 AGGTCGTTCGTCAACTTATTTGC 59.814 43.478 0.00 0.00 34.88 3.68
4561 6238 1.355066 GCTCAGTAGTTGTGCTCCGC 61.355 60.000 0.00 0.00 41.80 5.54
4668 6398 6.447162 TCTGCATCAATATAGTCTTACACCG 58.553 40.000 0.00 0.00 0.00 4.94
4698 6428 4.768130 TTCGACAGTTGTTGGAAAACAA 57.232 36.364 0.04 0.04 40.05 2.83
4704 6434 7.433719 TCGACAGTTGTTGGAAAACAATTATTG 59.566 33.333 3.07 3.07 43.59 1.90
4747 6477 5.517411 CACTTGCACATATTATGTTTGGCTG 59.483 40.000 6.58 7.69 42.70 4.85
4755 6488 8.963725 CACATATTATGTTTGGCTGGATATCAT 58.036 33.333 6.58 0.00 42.70 2.45
4799 6533 3.494048 CCTCACATCATAAGCCTGAGGTC 60.494 52.174 0.00 0.00 42.14 3.85
4811 6546 2.614987 GCCTGAGGTCTGATATGCCATC 60.615 54.545 0.00 0.00 0.00 3.51
4831 6566 5.279006 CCATCACTAAGCCTATTTCTCGCTA 60.279 44.000 0.00 0.00 31.12 4.26
4835 6570 6.043411 CACTAAGCCTATTTCTCGCTAACTT 58.957 40.000 0.00 0.00 31.12 2.66
4836 6571 6.535508 CACTAAGCCTATTTCTCGCTAACTTT 59.464 38.462 0.00 0.00 31.12 2.66
4837 6572 7.064728 CACTAAGCCTATTTCTCGCTAACTTTT 59.935 37.037 0.00 0.00 31.12 2.27
4838 6573 6.819397 AAGCCTATTTCTCGCTAACTTTTT 57.181 33.333 0.00 0.00 31.12 1.94
4860 6595 5.371115 TTTTTGAGGCAACCTATTTCTCG 57.629 39.130 0.00 0.00 31.76 4.04
4861 6596 2.024176 TGAGGCAACCTATTTCTCGC 57.976 50.000 0.00 0.00 31.76 5.03
4862 6597 1.555075 TGAGGCAACCTATTTCTCGCT 59.445 47.619 0.00 0.00 31.76 4.93
4863 6598 2.027192 TGAGGCAACCTATTTCTCGCTT 60.027 45.455 0.00 0.00 31.76 4.68
4864 6599 3.196901 TGAGGCAACCTATTTCTCGCTTA 59.803 43.478 0.00 0.00 31.76 3.09
4865 6600 4.141711 TGAGGCAACCTATTTCTCGCTTAT 60.142 41.667 0.00 0.00 31.76 1.73
4866 6601 4.781934 AGGCAACCTATTTCTCGCTTATT 58.218 39.130 0.00 0.00 28.47 1.40
4927 6662 2.514592 CCACGGCCATCAAGCGAT 60.515 61.111 2.24 0.00 0.00 4.58
4928 6663 2.114670 CCACGGCCATCAAGCGATT 61.115 57.895 2.24 0.00 0.00 3.34
4929 6664 1.656818 CCACGGCCATCAAGCGATTT 61.657 55.000 2.24 0.00 0.00 2.17
4930 6665 0.171007 CACGGCCATCAAGCGATTTT 59.829 50.000 2.24 0.00 0.00 1.82
4931 6666 0.887933 ACGGCCATCAAGCGATTTTT 59.112 45.000 2.24 0.00 0.00 1.94
4932 6667 1.135402 ACGGCCATCAAGCGATTTTTC 60.135 47.619 2.24 0.00 0.00 2.29
4933 6668 1.133025 CGGCCATCAAGCGATTTTTCT 59.867 47.619 2.24 0.00 0.00 2.52
4934 6669 2.415893 CGGCCATCAAGCGATTTTTCTT 60.416 45.455 2.24 0.00 0.00 2.52
4935 6670 3.588955 GGCCATCAAGCGATTTTTCTTT 58.411 40.909 0.00 0.00 0.00 2.52
4936 6671 3.614176 GGCCATCAAGCGATTTTTCTTTC 59.386 43.478 0.00 0.00 0.00 2.62
4937 6672 4.236935 GCCATCAAGCGATTTTTCTTTCA 58.763 39.130 0.00 0.00 0.00 2.69
4938 6673 4.866486 GCCATCAAGCGATTTTTCTTTCAT 59.134 37.500 0.00 0.00 0.00 2.57
4939 6674 6.035843 GCCATCAAGCGATTTTTCTTTCATA 58.964 36.000 0.00 0.00 0.00 2.15
4940 6675 6.698766 GCCATCAAGCGATTTTTCTTTCATAT 59.301 34.615 0.00 0.00 0.00 1.78
4941 6676 7.096312 GCCATCAAGCGATTTTTCTTTCATATC 60.096 37.037 0.00 0.00 0.00 1.63
4952 6687 9.996554 ATTTTTCTTTCATATCGGTTTTCCTTT 57.003 25.926 0.00 0.00 37.95 3.11
4960 6695 8.755696 TCATATCGGTTTTCCTTTCATTTTTG 57.244 30.769 0.00 0.00 37.95 2.44
4965 6700 4.025229 GGTTTTCCTTTCATTTTTGGCGTC 60.025 41.667 0.00 0.00 36.94 5.19
4982 6717 0.368227 GTCTGCGCTTGATTCGAGTG 59.632 55.000 9.73 9.71 0.00 3.51
4987 6722 0.094216 CGCTTGATTCGAGTGCAGTG 59.906 55.000 0.00 0.00 0.00 3.66
4998 6733 1.152756 GTGCAGTGGGTTGGGTTCT 60.153 57.895 0.00 0.00 0.00 3.01
5017 6752 2.100749 TCTGTTTTGTCAGAGACTCGCA 59.899 45.455 0.00 0.00 39.20 5.10
5038 6773 2.182842 CGGCCTGGTATGCTGCTTC 61.183 63.158 0.00 0.00 0.00 3.86
5090 6826 9.640963 TTTTTATTTCTGTTCGTTTCTTTTCCA 57.359 25.926 0.00 0.00 0.00 3.53
5149 6885 6.904463 TCCTTTATTTTAGCTCCCGTTTTT 57.096 33.333 0.00 0.00 0.00 1.94
5179 6932 4.555708 CGTCCAATTCAAAATTGTCCGTCA 60.556 41.667 10.55 0.00 0.00 4.35
5187 6940 8.687824 ATTCAAAATTGTCCGTCATGTATTTC 57.312 30.769 0.00 0.00 0.00 2.17
5204 6957 7.119605 TGTATTTCAAAAATGTTCAGCATGC 57.880 32.000 10.51 10.51 37.96 4.06
5209 6962 4.025896 TCAAAAATGTTCAGCATGCGTTTG 60.026 37.500 13.01 5.48 37.96 2.93
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 4.036734 GTCAAATTTGAACAGAGTGCAGGA 59.963 41.667 22.07 0.00 39.21 3.86
1 2 4.037208 AGTCAAATTTGAACAGAGTGCAGG 59.963 41.667 22.07 0.00 39.21 4.85
25 26 4.153117 CCCAAGACAAGAGAGAACAAATCG 59.847 45.833 0.00 0.00 0.00 3.34
56 57 8.697067 CATGTCAAATTTGAATGAACAAGAGAC 58.303 33.333 22.07 6.65 39.21 3.36
57 58 8.415553 ACATGTCAAATTTGAATGAACAAGAGA 58.584 29.630 29.59 8.56 39.21 3.10
59 60 9.462174 GTACATGTCAAATTTGAATGAACAAGA 57.538 29.630 29.59 13.12 39.21 3.02
121 122 0.807496 GCTGCTTCAGTTGCCCTAAG 59.193 55.000 0.00 0.00 33.43 2.18
124 125 1.602888 CTGCTGCTTCAGTTGCCCT 60.603 57.895 0.00 0.00 33.43 5.19
126 127 1.584380 CCTCTGCTGCTTCAGTTGCC 61.584 60.000 0.00 0.00 35.63 4.52
127 128 1.874562 CCTCTGCTGCTTCAGTTGC 59.125 57.895 0.00 0.00 35.63 4.17
128 129 1.584380 GGCCTCTGCTGCTTCAGTTG 61.584 60.000 0.00 1.25 37.74 3.16
129 130 1.303155 GGCCTCTGCTGCTTCAGTT 60.303 57.895 0.00 0.00 37.74 3.16
130 131 2.350514 GGCCTCTGCTGCTTCAGT 59.649 61.111 0.00 0.00 37.74 3.41
131 132 2.818714 CGGCCTCTGCTGCTTCAG 60.819 66.667 0.00 0.21 36.98 3.02
132 133 4.399395 CCGGCCTCTGCTGCTTCA 62.399 66.667 0.00 0.00 42.87 3.02
133 134 4.087892 TCCGGCCTCTGCTGCTTC 62.088 66.667 0.00 0.00 42.87 3.86
134 135 4.093291 CTCCGGCCTCTGCTGCTT 62.093 66.667 0.00 0.00 42.87 3.91
138 139 4.488911 ATCCCTCCGGCCTCTGCT 62.489 66.667 0.00 0.00 37.74 4.24
139 140 3.468326 GAATCCCTCCGGCCTCTGC 62.468 68.421 0.00 0.00 0.00 4.26
140 141 2.812619 GGAATCCCTCCGGCCTCTG 61.813 68.421 0.00 0.00 33.37 3.35
141 142 2.446802 GGAATCCCTCCGGCCTCT 60.447 66.667 0.00 0.00 33.37 3.69
142 143 3.561241 GGGAATCCCTCCGGCCTC 61.561 72.222 11.95 0.00 46.51 4.70
150 151 5.610557 TTTTTGGAAAAATGAGGGAATCCCT 59.389 36.000 23.07 23.07 43.75 4.20
151 152 5.497464 TTTTGGAAAAATGAGGGAATCCC 57.503 39.130 11.16 11.16 45.90 3.85
152 153 6.295249 TGTTTTTGGAAAAATGAGGGAATCC 58.705 36.000 0.84 0.00 39.75 3.01
153 154 6.992123 ACTGTTTTTGGAAAAATGAGGGAATC 59.008 34.615 0.84 0.00 39.75 2.52
154 155 6.899089 ACTGTTTTTGGAAAAATGAGGGAAT 58.101 32.000 0.84 0.00 39.75 3.01
155 156 6.306643 ACTGTTTTTGGAAAAATGAGGGAA 57.693 33.333 0.84 0.00 39.75 3.97
156 157 5.948742 ACTGTTTTTGGAAAAATGAGGGA 57.051 34.783 0.84 0.00 39.75 4.20
157 158 6.374053 ACAAACTGTTTTTGGAAAAATGAGGG 59.626 34.615 2.41 0.00 39.75 4.30
158 159 7.334171 AGACAAACTGTTTTTGGAAAAATGAGG 59.666 33.333 2.41 0.00 39.75 3.86
159 160 8.255394 AGACAAACTGTTTTTGGAAAAATGAG 57.745 30.769 2.41 3.69 39.75 2.90
160 161 8.614469 AAGACAAACTGTTTTTGGAAAAATGA 57.386 26.923 2.41 0.00 39.75 2.57
161 162 9.328721 GAAAGACAAACTGTTTTTGGAAAAATG 57.671 29.630 2.41 0.00 39.75 2.32
162 163 9.061435 TGAAAGACAAACTGTTTTTGGAAAAAT 57.939 25.926 2.41 0.00 39.75 1.82
163 164 8.438676 TGAAAGACAAACTGTTTTTGGAAAAA 57.561 26.923 2.41 0.00 35.23 1.94
164 165 7.172361 CCTGAAAGACAAACTGTTTTTGGAAAA 59.828 33.333 2.41 0.00 35.23 2.29
165 166 6.648725 CCTGAAAGACAAACTGTTTTTGGAAA 59.351 34.615 2.41 0.00 35.23 3.13
166 167 6.162777 CCTGAAAGACAAACTGTTTTTGGAA 58.837 36.000 2.41 0.00 35.23 3.53
167 168 5.719173 CCTGAAAGACAAACTGTTTTTGGA 58.281 37.500 2.41 0.00 35.23 3.53
168 169 4.329801 GCCTGAAAGACAAACTGTTTTTGG 59.670 41.667 2.41 0.00 35.23 3.28
169 170 4.329801 GGCCTGAAAGACAAACTGTTTTTG 59.670 41.667 2.41 0.00 35.23 2.44
170 171 4.503910 GGCCTGAAAGACAAACTGTTTTT 58.496 39.130 2.41 0.00 37.38 1.94
171 172 3.118775 GGGCCTGAAAGACAAACTGTTTT 60.119 43.478 0.84 0.00 34.07 2.43
172 173 2.430694 GGGCCTGAAAGACAAACTGTTT 59.569 45.455 0.84 0.00 34.07 2.83
173 174 2.031870 GGGCCTGAAAGACAAACTGTT 58.968 47.619 0.84 0.00 34.07 3.16
174 175 1.064017 TGGGCCTGAAAGACAAACTGT 60.064 47.619 4.53 0.00 34.07 3.55
175 176 1.338020 GTGGGCCTGAAAGACAAACTG 59.662 52.381 4.53 0.00 34.07 3.16
176 177 1.692411 GTGGGCCTGAAAGACAAACT 58.308 50.000 4.53 0.00 34.07 2.66
177 178 0.673985 GGTGGGCCTGAAAGACAAAC 59.326 55.000 4.53 0.00 34.07 2.93
178 179 0.469144 GGGTGGGCCTGAAAGACAAA 60.469 55.000 4.53 0.00 34.07 2.83
179 180 1.152830 GGGTGGGCCTGAAAGACAA 59.847 57.895 4.53 0.00 34.07 3.18
180 181 2.840753 GGGGTGGGCCTGAAAGACA 61.841 63.158 4.53 0.00 34.07 3.41
181 182 2.035783 GGGGTGGGCCTGAAAGAC 59.964 66.667 4.53 0.00 34.07 3.01
182 183 2.121506 AGGGGTGGGCCTGAAAGA 60.122 61.111 4.53 0.00 34.07 2.52
183 184 2.036256 CAGGGGTGGGCCTGAAAG 59.964 66.667 4.53 0.00 36.26 2.62
184 185 2.088096 TTCAGGGGTGGGCCTGAAA 61.088 57.895 4.53 0.00 46.01 2.69
325 358 2.271944 ATATAAAGCGGGGTGGAAGC 57.728 50.000 0.00 0.00 0.00 3.86
361 394 4.083164 TCTGTCAATTATGTGCTGCAGTTG 60.083 41.667 16.64 9.95 0.00 3.16
363 396 3.438087 GTCTGTCAATTATGTGCTGCAGT 59.562 43.478 16.64 0.00 0.00 4.40
417 450 5.536161 CAGCAAGGGCCATTGTATAATAACT 59.464 40.000 29.20 13.53 42.56 2.24
428 466 2.543635 AGAAATTCAGCAAGGGCCATT 58.456 42.857 6.18 0.00 42.56 3.16
476 515 1.823169 AAGGGCGAGGCGTAAAGACA 61.823 55.000 0.00 0.00 0.00 3.41
488 527 1.828979 GGTACCAATTTCAAGGGCGA 58.171 50.000 7.15 0.00 0.00 5.54
524 563 3.832490 ACAGTCAAGACATGTGCTACCTA 59.168 43.478 1.15 0.00 0.00 3.08
525 564 2.634940 ACAGTCAAGACATGTGCTACCT 59.365 45.455 1.15 0.00 0.00 3.08
526 565 3.045601 ACAGTCAAGACATGTGCTACC 57.954 47.619 1.15 0.00 0.00 3.18
527 566 4.058124 TGAACAGTCAAGACATGTGCTAC 58.942 43.478 1.15 0.00 0.00 3.58
528 567 4.335400 TGAACAGTCAAGACATGTGCTA 57.665 40.909 1.15 0.00 0.00 3.49
529 568 3.198409 TGAACAGTCAAGACATGTGCT 57.802 42.857 1.15 0.00 0.00 4.40
530 569 3.969117 TTGAACAGTCAAGACATGTGC 57.031 42.857 1.15 3.94 38.88 4.57
531 570 6.974048 TCAAATTTGAACAGTCAAGACATGTG 59.026 34.615 18.45 0.00 44.49 3.21
532 571 7.099266 TCAAATTTGAACAGTCAAGACATGT 57.901 32.000 18.45 0.00 44.49 3.21
533 572 7.990541 TTCAAATTTGAACAGTCAAGACATG 57.009 32.000 26.01 0.00 44.49 3.21
534 573 8.253113 AGTTTCAAATTTGAACAGTCAAGACAT 58.747 29.630 28.78 11.56 45.99 3.06
535 574 7.541783 CAGTTTCAAATTTGAACAGTCAAGACA 59.458 33.333 28.78 10.98 45.99 3.41
536 575 7.542130 ACAGTTTCAAATTTGAACAGTCAAGAC 59.458 33.333 28.78 21.33 45.99 3.01
537 576 7.541783 CACAGTTTCAAATTTGAACAGTCAAGA 59.458 33.333 28.78 12.29 45.99 3.02
538 577 7.541783 TCACAGTTTCAAATTTGAACAGTCAAG 59.458 33.333 28.78 17.47 45.99 3.02
539 578 7.374272 TCACAGTTTCAAATTTGAACAGTCAA 58.626 30.769 28.78 13.61 45.99 3.18
540 579 6.918626 TCACAGTTTCAAATTTGAACAGTCA 58.081 32.000 28.78 14.27 45.99 3.41
541 580 7.810766 TTCACAGTTTCAAATTTGAACAGTC 57.189 32.000 28.78 19.36 45.99 3.51
542 581 8.253113 AGATTCACAGTTTCAAATTTGAACAGT 58.747 29.630 28.78 23.09 45.99 3.55
543 582 8.638685 AGATTCACAGTTTCAAATTTGAACAG 57.361 30.769 28.78 22.56 45.99 3.16
544 583 9.734620 CTAGATTCACAGTTTCAAATTTGAACA 57.265 29.630 28.78 18.40 45.99 3.18
545 584 9.736023 ACTAGATTCACAGTTTCAAATTTGAAC 57.264 29.630 28.78 22.64 45.99 3.18
546 585 9.950680 GACTAGATTCACAGTTTCAAATTTGAA 57.049 29.630 26.01 26.01 44.78 2.69
547 586 8.567948 GGACTAGATTCACAGTTTCAAATTTGA 58.432 33.333 16.91 16.91 34.92 2.69
548 587 8.352201 TGGACTAGATTCACAGTTTCAAATTTG 58.648 33.333 12.15 12.15 0.00 2.32
549 588 8.463930 TGGACTAGATTCACAGTTTCAAATTT 57.536 30.769 0.00 0.00 0.00 1.82
550 589 7.939039 TCTGGACTAGATTCACAGTTTCAAATT 59.061 33.333 0.00 0.00 0.00 1.82
551 590 7.453393 TCTGGACTAGATTCACAGTTTCAAAT 58.547 34.615 0.00 0.00 0.00 2.32
552 591 6.826668 TCTGGACTAGATTCACAGTTTCAAA 58.173 36.000 0.00 0.00 0.00 2.69
553 592 6.419484 TCTGGACTAGATTCACAGTTTCAA 57.581 37.500 0.00 0.00 0.00 2.69
554 593 6.014242 ACATCTGGACTAGATTCACAGTTTCA 60.014 38.462 0.00 0.00 43.68 2.69
555 594 6.402222 ACATCTGGACTAGATTCACAGTTTC 58.598 40.000 0.00 0.00 43.68 2.78
556 595 6.365970 ACATCTGGACTAGATTCACAGTTT 57.634 37.500 0.00 0.00 43.68 2.66
557 596 6.665680 AGTACATCTGGACTAGATTCACAGTT 59.334 38.462 0.00 0.00 43.68 3.16
558 597 6.096141 CAGTACATCTGGACTAGATTCACAGT 59.904 42.308 0.00 0.00 43.68 3.55
559 598 6.096141 ACAGTACATCTGGACTAGATTCACAG 59.904 42.308 0.00 0.55 43.68 3.66
560 599 5.952347 ACAGTACATCTGGACTAGATTCACA 59.048 40.000 0.00 0.00 43.68 3.58
561 600 6.269315 CACAGTACATCTGGACTAGATTCAC 58.731 44.000 0.00 0.64 43.68 3.18
562 601 5.163509 GCACAGTACATCTGGACTAGATTCA 60.164 44.000 0.00 0.00 43.68 2.57
563 602 5.285651 GCACAGTACATCTGGACTAGATTC 58.714 45.833 0.00 0.00 43.68 2.52
564 603 4.100189 GGCACAGTACATCTGGACTAGATT 59.900 45.833 0.00 0.00 43.68 2.40
570 609 6.931418 CTGTCAGGCACAGTACATCTGGAC 62.931 54.167 0.00 0.00 46.81 4.02
571 610 4.936502 CTGTCAGGCACAGTACATCTGGA 61.937 52.174 0.00 0.00 46.81 3.86
572 611 2.676176 CTGTCAGGCACAGTACATCTGG 60.676 54.545 0.00 0.00 46.81 3.86
573 612 2.614779 CTGTCAGGCACAGTACATCTG 58.385 52.381 0.00 0.00 46.81 2.90
582 621 1.071299 AATCACGCTGTCAGGCACA 59.929 52.632 1.14 0.00 0.00 4.57
583 622 1.230635 ACAATCACGCTGTCAGGCAC 61.231 55.000 1.14 0.00 0.00 5.01
584 623 0.534877 AACAATCACGCTGTCAGGCA 60.535 50.000 1.14 0.00 0.00 4.75
585 624 0.593128 AAACAATCACGCTGTCAGGC 59.407 50.000 1.14 0.00 0.00 4.85
586 625 2.662791 CGAAAACAATCACGCTGTCAGG 60.663 50.000 1.14 0.00 0.00 3.86
587 626 2.032894 ACGAAAACAATCACGCTGTCAG 60.033 45.455 0.00 0.00 0.00 3.51
588 627 1.937223 ACGAAAACAATCACGCTGTCA 59.063 42.857 0.00 0.00 0.00 3.58
589 628 2.221055 AGACGAAAACAATCACGCTGTC 59.779 45.455 0.00 0.00 0.00 3.51
590 629 2.210116 AGACGAAAACAATCACGCTGT 58.790 42.857 0.00 0.00 0.00 4.40
591 630 2.949714 AGACGAAAACAATCACGCTG 57.050 45.000 0.00 0.00 0.00 5.18
592 631 2.993899 CCTAGACGAAAACAATCACGCT 59.006 45.455 0.00 0.00 0.00 5.07
593 632 2.735134 ACCTAGACGAAAACAATCACGC 59.265 45.455 0.00 0.00 0.00 5.34
594 633 4.031426 GCTACCTAGACGAAAACAATCACG 59.969 45.833 0.00 0.00 0.00 4.35
595 634 4.927425 TGCTACCTAGACGAAAACAATCAC 59.073 41.667 0.00 0.00 0.00 3.06
596 635 4.927425 GTGCTACCTAGACGAAAACAATCA 59.073 41.667 0.00 0.00 0.00 2.57
597 636 4.329256 GGTGCTACCTAGACGAAAACAATC 59.671 45.833 0.00 0.00 34.73 2.67
598 637 4.251268 GGTGCTACCTAGACGAAAACAAT 58.749 43.478 0.00 0.00 34.73 2.71
599 638 3.656559 GGTGCTACCTAGACGAAAACAA 58.343 45.455 0.00 0.00 34.73 2.83
600 639 2.352030 CGGTGCTACCTAGACGAAAACA 60.352 50.000 0.00 0.00 35.66 2.83
601 640 2.257034 CGGTGCTACCTAGACGAAAAC 58.743 52.381 0.00 0.00 35.66 2.43
602 641 1.888512 ACGGTGCTACCTAGACGAAAA 59.111 47.619 0.00 0.00 35.66 2.29
603 642 1.538047 ACGGTGCTACCTAGACGAAA 58.462 50.000 0.00 0.00 35.66 3.46
604 643 1.538047 AACGGTGCTACCTAGACGAA 58.462 50.000 0.00 0.00 35.66 3.85
605 644 2.401583 TAACGGTGCTACCTAGACGA 57.598 50.000 0.00 0.00 35.66 4.20
606 645 3.369385 CAATAACGGTGCTACCTAGACG 58.631 50.000 0.00 0.00 35.66 4.18
607 646 3.121544 GCAATAACGGTGCTACCTAGAC 58.878 50.000 0.00 0.00 39.00 2.59
608 647 2.101917 GGCAATAACGGTGCTACCTAGA 59.898 50.000 0.00 0.00 41.88 2.43
609 648 2.159014 TGGCAATAACGGTGCTACCTAG 60.159 50.000 4.21 0.00 41.88 3.02
610 649 1.832366 TGGCAATAACGGTGCTACCTA 59.168 47.619 4.21 0.00 41.88 3.08
611 650 0.616371 TGGCAATAACGGTGCTACCT 59.384 50.000 4.21 0.00 41.88 3.08
612 651 1.400494 CTTGGCAATAACGGTGCTACC 59.600 52.381 0.00 0.00 41.88 3.18
613 652 2.081462 ACTTGGCAATAACGGTGCTAC 58.919 47.619 0.00 0.00 41.88 3.58
614 653 2.483014 ACTTGGCAATAACGGTGCTA 57.517 45.000 0.00 0.00 41.88 3.49
615 654 2.356135 CTACTTGGCAATAACGGTGCT 58.644 47.619 0.00 0.00 41.88 4.40
616 655 1.202143 GCTACTTGGCAATAACGGTGC 60.202 52.381 0.00 0.00 41.45 5.01
617 656 2.080693 TGCTACTTGGCAATAACGGTG 58.919 47.619 0.00 0.00 39.43 4.94
618 657 2.483014 TGCTACTTGGCAATAACGGT 57.517 45.000 0.00 0.00 39.43 4.83
626 665 2.420547 CCTCTAGCATTGCTACTTGGCA 60.421 50.000 14.33 0.00 40.44 4.92
627 666 2.216898 CCTCTAGCATTGCTACTTGGC 58.783 52.381 14.33 0.00 40.44 4.52
628 667 2.216898 GCCTCTAGCATTGCTACTTGG 58.783 52.381 14.33 15.63 42.97 3.61
639 678 9.536554 ATTTCGGGAAATAAGATGCCTCTAGCA 62.537 40.741 4.89 0.00 46.65 3.49
640 679 3.006967 TCGGGAAATAAGATGCCTCTAGC 59.993 47.826 0.00 0.00 44.14 3.42
641 680 4.873746 TCGGGAAATAAGATGCCTCTAG 57.126 45.455 0.00 0.00 0.00 2.43
642 681 5.623956 TTTCGGGAAATAAGATGCCTCTA 57.376 39.130 0.00 0.00 0.00 2.43
643 682 4.503714 TTTCGGGAAATAAGATGCCTCT 57.496 40.909 0.00 0.00 0.00 3.69
644 683 4.821805 TGATTTCGGGAAATAAGATGCCTC 59.178 41.667 6.63 0.00 40.77 4.70
645 684 4.792068 TGATTTCGGGAAATAAGATGCCT 58.208 39.130 6.63 0.00 40.77 4.75
646 685 4.580580 ACTGATTTCGGGAAATAAGATGCC 59.419 41.667 20.43 3.57 40.27 4.40
647 686 5.757850 ACTGATTTCGGGAAATAAGATGC 57.242 39.130 20.43 4.15 40.27 3.91
648 687 7.702348 GGAAAACTGATTTCGGGAAATAAGATG 59.298 37.037 20.43 7.32 46.93 2.90
649 688 7.615757 AGGAAAACTGATTTCGGGAAATAAGAT 59.384 33.333 20.43 9.62 46.93 2.40
650 689 6.946009 AGGAAAACTGATTTCGGGAAATAAGA 59.054 34.615 20.43 3.65 46.93 2.10
651 690 7.158099 AGGAAAACTGATTTCGGGAAATAAG 57.842 36.000 14.36 14.36 46.93 1.73
667 706 1.538687 GGCTGGCATGCAGGAAAACT 61.539 55.000 21.36 0.00 34.04 2.66
668 707 1.079612 GGCTGGCATGCAGGAAAAC 60.080 57.895 21.36 0.00 34.04 2.43
669 708 2.285024 GGGCTGGCATGCAGGAAAA 61.285 57.895 21.36 0.00 34.04 2.29
670 709 2.681064 GGGCTGGCATGCAGGAAA 60.681 61.111 21.36 0.00 34.04 3.13
671 710 4.764771 GGGGCTGGCATGCAGGAA 62.765 66.667 21.36 0.45 34.04 3.36
674 713 3.949885 TTCAGGGGCTGGCATGCAG 62.950 63.158 21.36 15.53 34.04 4.41
675 714 2.808761 ATTTCAGGGGCTGGCATGCA 62.809 55.000 21.36 4.79 34.04 3.96
676 715 1.619807 AATTTCAGGGGCTGGCATGC 61.620 55.000 9.90 9.90 31.51 4.06
677 716 0.177141 CAATTTCAGGGGCTGGCATG 59.823 55.000 2.88 1.25 31.51 4.06
678 717 0.979187 CCAATTTCAGGGGCTGGCAT 60.979 55.000 2.88 0.00 31.51 4.40
679 718 1.610086 CCAATTTCAGGGGCTGGCA 60.610 57.895 2.88 0.00 31.51 4.92
680 719 0.324275 TACCAATTTCAGGGGCTGGC 60.324 55.000 0.00 0.00 31.51 4.85
681 720 2.091665 AGATACCAATTTCAGGGGCTGG 60.092 50.000 0.00 0.00 31.51 4.85
682 721 3.303351 AGATACCAATTTCAGGGGCTG 57.697 47.619 0.00 0.00 0.00 4.85
683 722 3.269381 TCAAGATACCAATTTCAGGGGCT 59.731 43.478 0.00 0.00 0.00 5.19
684 723 3.631250 TCAAGATACCAATTTCAGGGGC 58.369 45.455 0.00 0.00 0.00 5.80
685 724 5.658190 ACAATCAAGATACCAATTTCAGGGG 59.342 40.000 0.00 0.00 0.00 4.79
686 725 6.780457 ACAATCAAGATACCAATTTCAGGG 57.220 37.500 0.00 0.00 0.00 4.45
687 726 8.511604 AGTACAATCAAGATACCAATTTCAGG 57.488 34.615 0.00 0.00 0.00 3.86
691 730 8.893727 GCAGTAGTACAATCAAGATACCAATTT 58.106 33.333 2.52 0.00 0.00 1.82
692 731 7.499232 GGCAGTAGTACAATCAAGATACCAATT 59.501 37.037 2.52 0.00 0.00 2.32
693 732 6.992715 GGCAGTAGTACAATCAAGATACCAAT 59.007 38.462 2.52 0.00 0.00 3.16
694 733 6.346096 GGCAGTAGTACAATCAAGATACCAA 58.654 40.000 2.52 0.00 0.00 3.67
695 734 5.163343 GGGCAGTAGTACAATCAAGATACCA 60.163 44.000 2.52 0.00 0.00 3.25
696 735 5.298347 GGGCAGTAGTACAATCAAGATACC 58.702 45.833 2.52 0.00 0.00 2.73
697 736 5.070580 AGGGGCAGTAGTACAATCAAGATAC 59.929 44.000 2.52 0.00 0.00 2.24
698 737 5.070446 CAGGGGCAGTAGTACAATCAAGATA 59.930 44.000 2.52 0.00 0.00 1.98
699 738 4.040755 AGGGGCAGTAGTACAATCAAGAT 58.959 43.478 2.52 0.00 0.00 2.40
700 739 3.197766 CAGGGGCAGTAGTACAATCAAGA 59.802 47.826 2.52 0.00 0.00 3.02
701 740 3.197766 TCAGGGGCAGTAGTACAATCAAG 59.802 47.826 2.52 0.00 0.00 3.02
702 741 3.178046 TCAGGGGCAGTAGTACAATCAA 58.822 45.455 2.52 0.00 0.00 2.57
703 742 2.827755 TCAGGGGCAGTAGTACAATCA 58.172 47.619 2.52 0.00 0.00 2.57
704 743 3.906720 TTCAGGGGCAGTAGTACAATC 57.093 47.619 2.52 0.00 0.00 2.67
705 744 4.862641 ATTTCAGGGGCAGTAGTACAAT 57.137 40.909 2.52 0.00 0.00 2.71
706 745 4.042311 TCAATTTCAGGGGCAGTAGTACAA 59.958 41.667 2.52 0.00 0.00 2.41
707 746 3.585289 TCAATTTCAGGGGCAGTAGTACA 59.415 43.478 2.52 0.00 0.00 2.90
708 747 4.216411 TCAATTTCAGGGGCAGTAGTAC 57.784 45.455 0.00 0.00 0.00 2.73
709 748 6.558775 AGATATCAATTTCAGGGGCAGTAGTA 59.441 38.462 5.32 0.00 0.00 1.82
710 749 5.370880 AGATATCAATTTCAGGGGCAGTAGT 59.629 40.000 5.32 0.00 0.00 2.73
711 750 5.874093 AGATATCAATTTCAGGGGCAGTAG 58.126 41.667 5.32 0.00 0.00 2.57
712 751 5.912149 AGATATCAATTTCAGGGGCAGTA 57.088 39.130 5.32 0.00 0.00 2.74
713 752 4.803329 AGATATCAATTTCAGGGGCAGT 57.197 40.909 5.32 0.00 0.00 4.40
714 753 5.135383 TCAAGATATCAATTTCAGGGGCAG 58.865 41.667 5.32 0.00 0.00 4.85
715 754 5.128033 TCAAGATATCAATTTCAGGGGCA 57.872 39.130 5.32 0.00 0.00 5.36
789 828 2.128035 GGCACCGTTCAGATAGATTCG 58.872 52.381 0.00 0.00 0.00 3.34
956 997 6.694447 ACCACCTGAATTTTCATCATCAAAG 58.306 36.000 0.00 0.00 36.46 2.77
969 1014 5.393027 CGCTGCTAATTAAACCACCTGAATT 60.393 40.000 0.00 0.00 0.00 2.17
993 1042 1.087501 GGTTGTCGCCCATCTTCTTC 58.912 55.000 0.00 0.00 0.00 2.87
994 1043 0.693049 AGGTTGTCGCCCATCTTCTT 59.307 50.000 0.00 0.00 0.00 2.52
995 1044 0.036010 CAGGTTGTCGCCCATCTTCT 60.036 55.000 0.00 0.00 0.00 2.85
1733 2875 6.033341 GTCTCAGCCATAATCTGTCGATATC 58.967 44.000 0.00 0.00 33.48 1.63
1751 2893 5.955488 TCTTCTTTTCATCCTACGTCTCAG 58.045 41.667 0.00 0.00 0.00 3.35
1871 3016 7.497249 AGCCAAATTTCAGAGATGTACTATGTC 59.503 37.037 0.00 0.00 38.74 3.06
1892 3037 8.348285 AGCATTTTTATTTGACTAGTAGCCAA 57.652 30.769 0.00 0.00 0.00 4.52
1916 3061 6.090483 TGAGTTCTGAAGGAAAGTACTGAG 57.910 41.667 0.00 0.00 35.51 3.35
2337 3639 4.292186 ACTGTTGCTTCCACACTATCAT 57.708 40.909 0.00 0.00 0.00 2.45
2343 3645 5.054477 TCTACTTAACTGTTGCTTCCACAC 58.946 41.667 2.69 0.00 0.00 3.82
2495 3805 2.208132 ATTTACCGTGATGCACCCAA 57.792 45.000 0.00 0.00 0.00 4.12
2728 4078 7.064064 CAGAAAAGTGAGAAGCGTAAAGTAAC 58.936 38.462 0.00 0.00 0.00 2.50
2779 4129 9.807921 ACAAATTATCACTCTTCCCTTCTAAAA 57.192 29.630 0.00 0.00 0.00 1.52
2788 4139 4.142381 GCCACCACAAATTATCACTCTTCC 60.142 45.833 0.00 0.00 0.00 3.46
2811 4162 4.142182 ACCATGAAGCCGTGAAAAATATGG 60.142 41.667 0.00 0.00 38.71 2.74
3251 4723 3.074390 TCCTGCTGAGGGAAAGATGAAAA 59.926 43.478 0.00 0.00 40.25 2.29
3288 4760 2.706190 AGGAAGCTACACAAAGTCCAGT 59.294 45.455 0.00 0.00 0.00 4.00
3348 4821 4.065088 TCCAGCTATTGTGTGAAGTGAAC 58.935 43.478 0.00 0.00 0.00 3.18
3401 4874 9.511144 AATGCGCTACTGGTATTTAAATAAAAC 57.489 29.630 9.73 0.56 0.00 2.43
3606 5095 4.585364 CGATAGCTCAGAAAATTGCAGTG 58.415 43.478 0.00 0.00 0.00 3.66
3628 5117 2.716217 ACTTGCTCCATTAGGACTTGC 58.284 47.619 0.00 0.00 39.61 4.01
3679 5168 9.971922 GATTTATAGCTAAATGACTGGCAAAAT 57.028 29.630 0.00 0.00 37.61 1.82
3747 5236 4.437930 GCAATCACTGTCAAGGAACATAGC 60.438 45.833 0.00 0.00 0.00 2.97
3907 5416 8.668510 ACATAATACTAGCTCTTCACCATTTG 57.331 34.615 0.00 0.00 0.00 2.32
3908 5417 9.686683 AAACATAATACTAGCTCTTCACCATTT 57.313 29.630 0.00 0.00 0.00 2.32
4024 5697 3.319198 TTGTCCCCAGCCGTCTCC 61.319 66.667 0.00 0.00 0.00 3.71
4033 5706 2.933287 ATGGCCTCGTTGTCCCCA 60.933 61.111 3.32 0.00 0.00 4.96
4057 5730 3.319198 TTCACGGTCAGGGCCTCC 61.319 66.667 0.95 1.02 0.00 4.30
4186 5859 3.315142 GACGGCAGTGGCATCCTCA 62.315 63.158 17.80 0.00 43.71 3.86
4207 5880 3.378399 GACCAGGGCCTCTTCGCTC 62.378 68.421 0.95 0.00 0.00 5.03
4241 5914 1.153568 CATCCGGCTTTGCTCGAGA 60.154 57.895 18.75 0.00 0.00 4.04
4342 6018 1.305549 CTGCTTTTGGGCCCCATCT 60.306 57.895 22.27 0.00 31.53 2.90
4365 6041 5.045869 AGGTTAATCGGGTCATCTTTCTTCA 60.046 40.000 0.00 0.00 0.00 3.02
4380 6056 3.926616 ACTGGTGTTCAGAGGTTAATCG 58.073 45.455 0.00 0.00 46.18 3.34
4468 6145 4.803329 AATGAATGCCCAATCCTCTACT 57.197 40.909 0.00 0.00 0.00 2.57
4481 6158 2.614057 CGACCTGAACCCTAATGAATGC 59.386 50.000 0.00 0.00 0.00 3.56
4509 6186 1.904287 TCGGGTGCAGCAAATAAGTT 58.096 45.000 19.06 0.00 0.00 2.66
4517 6194 2.031674 ATGATCGATCGGGTGCAGCA 62.032 55.000 20.03 4.57 0.00 4.41
4518 6195 1.287730 GATGATCGATCGGGTGCAGC 61.288 60.000 20.03 7.55 0.00 5.25
4519 6196 2.819667 GATGATCGATCGGGTGCAG 58.180 57.895 20.03 0.00 0.00 4.41
4561 6238 0.179250 CTGATCAACGCGACAAACCG 60.179 55.000 15.93 0.00 0.00 4.44
4687 6417 4.754114 TGGCAGCAATAATTGTTTTCCAAC 59.246 37.500 0.00 0.00 35.44 3.77
4689 6419 4.040217 AGTGGCAGCAATAATTGTTTTCCA 59.960 37.500 0.00 0.00 0.00 3.53
4698 6428 3.285484 CTGGAGAAGTGGCAGCAATAAT 58.715 45.455 0.00 0.00 0.00 1.28
4704 6434 1.270839 TGTAACTGGAGAAGTGGCAGC 60.271 52.381 0.00 0.00 39.81 5.25
4758 6491 9.866655 ATGTGAGGCCTTAAGATAAAATTATCA 57.133 29.630 6.77 0.00 41.52 2.15
4772 6506 3.048600 AGGCTTATGATGTGAGGCCTTA 58.951 45.455 6.77 0.00 46.36 2.69
4799 6533 4.283363 AGGCTTAGTGATGGCATATCAG 57.717 45.455 0.00 0.00 0.00 2.90
4811 6546 5.593010 AGTTAGCGAGAAATAGGCTTAGTG 58.407 41.667 0.00 0.00 38.19 2.74
4838 6573 4.320935 GCGAGAAATAGGTTGCCTCAAAAA 60.321 41.667 0.00 0.00 34.61 1.94
4839 6574 3.190535 GCGAGAAATAGGTTGCCTCAAAA 59.809 43.478 0.00 0.00 34.61 2.44
4840 6575 2.747446 GCGAGAAATAGGTTGCCTCAAA 59.253 45.455 0.00 0.00 34.61 2.69
4841 6576 2.027192 AGCGAGAAATAGGTTGCCTCAA 60.027 45.455 0.00 0.00 34.61 3.02
4842 6577 1.555075 AGCGAGAAATAGGTTGCCTCA 59.445 47.619 0.00 0.00 34.61 3.86
4843 6578 2.317530 AGCGAGAAATAGGTTGCCTC 57.682 50.000 0.00 0.00 34.61 4.70
4844 6579 2.789409 AAGCGAGAAATAGGTTGCCT 57.211 45.000 0.00 0.00 37.71 4.75
4845 6580 4.789802 GCAATAAGCGAGAAATAGGTTGCC 60.790 45.833 0.00 0.00 34.86 4.52
4846 6581 4.282873 GCAATAAGCGAGAAATAGGTTGC 58.717 43.478 0.00 0.00 33.66 4.17
4860 6595 4.335272 GCTAACTCAAACTCGCAATAAGC 58.665 43.478 0.00 0.00 40.87 3.09
4861 6596 4.569029 CGCTAACTCAAACTCGCAATAAG 58.431 43.478 0.00 0.00 0.00 1.73
4862 6597 3.181524 GCGCTAACTCAAACTCGCAATAA 60.182 43.478 0.00 0.00 41.84 1.40
4863 6598 2.347452 GCGCTAACTCAAACTCGCAATA 59.653 45.455 0.00 0.00 41.84 1.90
4864 6599 1.128692 GCGCTAACTCAAACTCGCAAT 59.871 47.619 0.00 0.00 41.84 3.56
4865 6600 0.511221 GCGCTAACTCAAACTCGCAA 59.489 50.000 0.00 0.00 41.84 4.85
4866 6601 0.319555 AGCGCTAACTCAAACTCGCA 60.320 50.000 8.99 0.00 44.27 5.10
4915 6650 4.236935 TGAAAGAAAAATCGCTTGATGGC 58.763 39.130 0.00 0.00 31.07 4.40
4925 6660 9.639601 AAGGAAAACCGATATGAAAGAAAAATC 57.360 29.630 0.00 0.00 0.00 2.17
4926 6661 9.996554 AAAGGAAAACCGATATGAAAGAAAAAT 57.003 25.926 0.00 0.00 0.00 1.82
4927 6662 9.471084 GAAAGGAAAACCGATATGAAAGAAAAA 57.529 29.630 0.00 0.00 0.00 1.94
4928 6663 8.634444 TGAAAGGAAAACCGATATGAAAGAAAA 58.366 29.630 0.00 0.00 0.00 2.29
4929 6664 8.172352 TGAAAGGAAAACCGATATGAAAGAAA 57.828 30.769 0.00 0.00 0.00 2.52
4930 6665 7.753309 TGAAAGGAAAACCGATATGAAAGAA 57.247 32.000 0.00 0.00 0.00 2.52
4931 6666 7.938140 ATGAAAGGAAAACCGATATGAAAGA 57.062 32.000 0.00 0.00 0.00 2.52
4932 6667 8.986477 AAATGAAAGGAAAACCGATATGAAAG 57.014 30.769 0.00 0.00 0.00 2.62
4933 6668 9.771534 AAAAATGAAAGGAAAACCGATATGAAA 57.228 25.926 0.00 0.00 0.00 2.69
4934 6669 9.202273 CAAAAATGAAAGGAAAACCGATATGAA 57.798 29.630 0.00 0.00 0.00 2.57
4935 6670 7.816995 CCAAAAATGAAAGGAAAACCGATATGA 59.183 33.333 0.00 0.00 0.00 2.15
4936 6671 7.412891 GCCAAAAATGAAAGGAAAACCGATATG 60.413 37.037 0.00 0.00 0.00 1.78
4937 6672 6.593770 GCCAAAAATGAAAGGAAAACCGATAT 59.406 34.615 0.00 0.00 0.00 1.63
4938 6673 5.929415 GCCAAAAATGAAAGGAAAACCGATA 59.071 36.000 0.00 0.00 0.00 2.92
4939 6674 4.754618 GCCAAAAATGAAAGGAAAACCGAT 59.245 37.500 0.00 0.00 0.00 4.18
4940 6675 4.123506 GCCAAAAATGAAAGGAAAACCGA 58.876 39.130 0.00 0.00 0.00 4.69
4941 6676 3.059935 CGCCAAAAATGAAAGGAAAACCG 60.060 43.478 0.00 0.00 0.00 4.44
4965 6700 1.059994 GCACTCGAATCAAGCGCAG 59.940 57.895 11.47 0.72 0.00 5.18
4974 6709 0.606401 CCAACCCACTGCACTCGAAT 60.606 55.000 0.00 0.00 0.00 3.34
4982 6717 0.755327 AACAGAACCCAACCCACTGC 60.755 55.000 0.00 0.00 32.67 4.40
4987 6722 2.100749 CTGACAAAACAGAACCCAACCC 59.899 50.000 0.00 0.00 39.94 4.11
4998 6733 2.595124 TGCGAGTCTCTGACAAAACA 57.405 45.000 0.00 0.00 34.60 2.83
5027 6762 4.708726 ATGGTTTTGAGAAGCAGCATAC 57.291 40.909 0.00 0.00 0.00 2.39
5065 6801 9.810545 ATGGAAAAGAAACGAACAGAAATAAAA 57.189 25.926 0.00 0.00 0.00 1.52
5070 6806 9.458374 GAAATATGGAAAAGAAACGAACAGAAA 57.542 29.630 0.00 0.00 0.00 2.52
5073 6809 7.593825 AGGAAATATGGAAAAGAAACGAACAG 58.406 34.615 0.00 0.00 0.00 3.16
5149 6885 6.568869 ACAATTTTGAATTGGACGAGAACAA 58.431 32.000 15.45 0.00 33.56 2.83
5159 6895 5.229423 ACATGACGGACAATTTTGAATTGG 58.771 37.500 15.45 3.48 33.56 3.16
5179 6932 7.412129 CGCATGCTGAACATTTTTGAAATACAT 60.412 33.333 17.13 0.00 36.64 2.29
5187 6940 4.025896 TCAAACGCATGCTGAACATTTTTG 60.026 37.500 17.13 13.26 36.64 2.44


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.