Multiple sequence alignment - TraesCS2D01G011100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2D01G011100 chr2D 100.000 3170 0 0 1 3170 5426342 5423173 0.000000e+00 5854
1 TraesCS2D01G011100 chr2D 94.007 267 15 1 2904 3170 321031970 321031705 1.370000e-108 403
2 TraesCS2D01G011100 chr2D 92.193 269 20 1 2903 3170 260770453 260770185 2.310000e-101 379
3 TraesCS2D01G011100 chr2D 85.852 311 38 6 2015 2323 5401898 5401592 3.050000e-85 326
4 TraesCS2D01G011100 chr2D 86.207 116 12 4 2572 2684 5401404 5401290 4.290000e-24 122
5 TraesCS2D01G011100 chr2D 87.255 102 11 2 1870 1969 5401997 5401896 7.190000e-22 115
6 TraesCS2D01G011100 chr2A 94.395 2676 95 22 516 3170 4048113 4045472 0.000000e+00 4060
7 TraesCS2D01G011100 chr2B 92.373 2255 112 25 668 2891 5786529 5784304 0.000000e+00 3157
8 TraesCS2D01G011100 chr2B 91.807 2136 102 21 781 2904 6022537 6024611 0.000000e+00 2907
9 TraesCS2D01G011100 chr2B 92.117 1852 99 18 1070 2904 6120409 6122230 0.000000e+00 2567
10 TraesCS2D01G011100 chr2B 93.960 1192 49 5 781 1949 6004527 6005718 0.000000e+00 1781
11 TraesCS2D01G011100 chr2B 91.927 929 53 8 1968 2891 6005842 6006753 0.000000e+00 1280
12 TraesCS2D01G011100 chr2B 88.031 635 48 13 1536 2162 6065048 6065662 0.000000e+00 726
13 TraesCS2D01G011100 chr2B 92.736 413 19 5 668 1072 6119877 6120286 1.270000e-163 586
14 TraesCS2D01G011100 chr2B 90.217 276 24 3 2898 3170 643915346 643915621 1.080000e-94 357
15 TraesCS2D01G011100 chr2B 90.370 270 21 5 2903 3170 236711616 236711350 1.810000e-92 350
16 TraesCS2D01G011100 chr2B 90.404 198 11 5 668 859 6022348 6022543 1.460000e-63 254
17 TraesCS2D01G011100 chr2B 89.899 198 12 5 668 859 6004338 6004533 6.790000e-62 248
18 TraesCS2D01G011100 chr1B 92.164 268 20 1 2904 3170 453201249 453201516 8.300000e-101 377
19 TraesCS2D01G011100 chr4D 91.575 273 20 3 2900 3170 484940926 484941197 1.070000e-99 374
20 TraesCS2D01G011100 chr7B 91.450 269 19 4 2903 3169 684271539 684271273 1.800000e-97 366
21 TraesCS2D01G011100 chr7D 90.037 271 26 1 2897 3167 427141228 427141497 1.810000e-92 350


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2D01G011100 chr2D 5423173 5426342 3169 True 5854.0 5854 100.000000 1 3170 1 chr2D.!!$R1 3169
1 TraesCS2D01G011100 chr2A 4045472 4048113 2641 True 4060.0 4060 94.395000 516 3170 1 chr2A.!!$R1 2654
2 TraesCS2D01G011100 chr2B 5784304 5786529 2225 True 3157.0 3157 92.373000 668 2891 1 chr2B.!!$R1 2223
3 TraesCS2D01G011100 chr2B 6022348 6024611 2263 False 1580.5 2907 91.105500 668 2904 2 chr2B.!!$F4 2236
4 TraesCS2D01G011100 chr2B 6119877 6122230 2353 False 1576.5 2567 92.426500 668 2904 2 chr2B.!!$F5 2236
5 TraesCS2D01G011100 chr2B 6004338 6006753 2415 False 1103.0 1781 91.928667 668 2891 3 chr2B.!!$F3 2223
6 TraesCS2D01G011100 chr2B 6065048 6065662 614 False 726.0 726 88.031000 1536 2162 1 chr2B.!!$F1 626

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
442 443 0.036010 AACAACAGCGATGAGGAGGG 60.036 55.0 8.12 0.0 0.00 4.30 F
1186 1486 0.034756 TCTACGAGCAAAGGCAAGCA 59.965 50.0 0.00 0.0 44.61 3.91 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1864 2188 0.249114 GAGAATCTCCGGCGGAACTC 60.249 60.000 30.59 26.78 0.00 3.01 R
3135 3580 1.445582 GTTGGGAGACGGTAGCACG 60.446 63.158 0.00 0.00 40.31 5.34 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
25 26 2.858745 CCGAGAAGGGAACAAAAAGGA 58.141 47.619 0.00 0.00 35.97 3.36
26 27 3.219281 CCGAGAAGGGAACAAAAAGGAA 58.781 45.455 0.00 0.00 35.97 3.36
27 28 3.634910 CCGAGAAGGGAACAAAAAGGAAA 59.365 43.478 0.00 0.00 35.97 3.13
28 29 4.499188 CCGAGAAGGGAACAAAAAGGAAAC 60.499 45.833 0.00 0.00 35.97 2.78
29 30 4.607955 GAGAAGGGAACAAAAAGGAAACG 58.392 43.478 0.00 0.00 0.00 3.60
30 31 4.274978 AGAAGGGAACAAAAAGGAAACGA 58.725 39.130 0.00 0.00 0.00 3.85
31 32 4.893524 AGAAGGGAACAAAAAGGAAACGAT 59.106 37.500 0.00 0.00 0.00 3.73
32 33 6.066032 AGAAGGGAACAAAAAGGAAACGATA 58.934 36.000 0.00 0.00 0.00 2.92
33 34 6.548251 AGAAGGGAACAAAAAGGAAACGATAA 59.452 34.615 0.00 0.00 0.00 1.75
34 35 6.911250 AGGGAACAAAAAGGAAACGATAAT 57.089 33.333 0.00 0.00 0.00 1.28
35 36 6.687604 AGGGAACAAAAAGGAAACGATAATG 58.312 36.000 0.00 0.00 0.00 1.90
36 37 5.347635 GGGAACAAAAAGGAAACGATAATGC 59.652 40.000 0.00 0.00 0.00 3.56
37 38 5.347635 GGAACAAAAAGGAAACGATAATGCC 59.652 40.000 0.00 0.00 0.00 4.40
38 39 5.722021 ACAAAAAGGAAACGATAATGCCT 57.278 34.783 0.00 0.00 0.00 4.75
39 40 6.096673 ACAAAAAGGAAACGATAATGCCTT 57.903 33.333 0.00 0.00 40.49 4.35
40 41 6.156519 ACAAAAAGGAAACGATAATGCCTTC 58.843 36.000 0.00 0.00 37.96 3.46
41 42 5.975693 AAAAGGAAACGATAATGCCTTCA 57.024 34.783 0.00 0.00 37.96 3.02
42 43 5.975693 AAAGGAAACGATAATGCCTTCAA 57.024 34.783 0.00 0.00 37.96 2.69
43 44 5.567138 AAGGAAACGATAATGCCTTCAAG 57.433 39.130 0.00 0.00 33.94 3.02
44 45 3.947834 AGGAAACGATAATGCCTTCAAGG 59.052 43.478 0.00 0.00 38.80 3.61
45 46 3.945285 GGAAACGATAATGCCTTCAAGGA 59.055 43.478 7.98 0.00 37.67 3.36
46 47 4.398044 GGAAACGATAATGCCTTCAAGGAA 59.602 41.667 7.98 0.00 37.67 3.36
47 48 5.449177 GGAAACGATAATGCCTTCAAGGAAG 60.449 44.000 7.98 0.00 37.67 3.46
48 49 4.487714 ACGATAATGCCTTCAAGGAAGA 57.512 40.909 7.98 0.00 41.71 2.87
49 50 4.446371 ACGATAATGCCTTCAAGGAAGAG 58.554 43.478 7.98 0.00 41.71 2.85
50 51 4.162320 ACGATAATGCCTTCAAGGAAGAGA 59.838 41.667 7.98 0.00 41.71 3.10
51 52 5.163258 ACGATAATGCCTTCAAGGAAGAGAT 60.163 40.000 7.98 0.00 41.71 2.75
52 53 5.178996 CGATAATGCCTTCAAGGAAGAGATG 59.821 44.000 7.98 0.00 41.71 2.90
53 54 4.581309 AATGCCTTCAAGGAAGAGATGA 57.419 40.909 7.98 0.00 41.71 2.92
54 55 3.340814 TGCCTTCAAGGAAGAGATGAC 57.659 47.619 7.98 0.00 41.71 3.06
55 56 2.639347 TGCCTTCAAGGAAGAGATGACA 59.361 45.455 7.98 0.00 41.71 3.58
56 57 3.006247 GCCTTCAAGGAAGAGATGACAC 58.994 50.000 7.98 0.00 41.71 3.67
57 58 3.604582 CCTTCAAGGAAGAGATGACACC 58.395 50.000 0.00 0.00 41.71 4.16
58 59 3.604582 CTTCAAGGAAGAGATGACACCC 58.395 50.000 0.00 0.00 41.71 4.61
59 60 2.619931 TCAAGGAAGAGATGACACCCA 58.380 47.619 0.00 0.00 0.00 4.51
60 61 3.184628 TCAAGGAAGAGATGACACCCAT 58.815 45.455 0.00 0.00 38.43 4.00
61 62 4.361783 TCAAGGAAGAGATGACACCCATA 58.638 43.478 0.00 0.00 35.17 2.74
62 63 4.406972 TCAAGGAAGAGATGACACCCATAG 59.593 45.833 0.00 0.00 35.17 2.23
63 64 3.312890 AGGAAGAGATGACACCCATAGG 58.687 50.000 0.00 0.00 35.17 2.57
64 65 3.051803 AGGAAGAGATGACACCCATAGGA 60.052 47.826 0.00 0.00 35.17 2.94
65 66 3.323403 GGAAGAGATGACACCCATAGGAG 59.677 52.174 0.00 0.00 35.17 3.69
66 67 3.981516 AGAGATGACACCCATAGGAGA 57.018 47.619 0.00 0.00 35.17 3.71
67 68 3.571590 AGAGATGACACCCATAGGAGAC 58.428 50.000 0.00 0.00 35.17 3.36
68 69 3.052566 AGAGATGACACCCATAGGAGACA 60.053 47.826 0.00 0.00 35.17 3.41
69 70 3.034635 AGATGACACCCATAGGAGACAC 58.965 50.000 0.00 0.00 35.17 3.67
70 71 1.568504 TGACACCCATAGGAGACACC 58.431 55.000 0.00 0.00 36.73 4.16
71 72 1.203250 TGACACCCATAGGAGACACCA 60.203 52.381 0.00 0.00 42.04 4.17
72 73 2.119495 GACACCCATAGGAGACACCAT 58.881 52.381 0.00 0.00 42.04 3.55
73 74 2.505819 GACACCCATAGGAGACACCATT 59.494 50.000 0.00 0.00 42.04 3.16
74 75 2.239654 ACACCCATAGGAGACACCATTG 59.760 50.000 0.00 0.00 42.04 2.82
75 76 2.239654 CACCCATAGGAGACACCATTGT 59.760 50.000 0.00 0.00 42.04 2.71
76 77 2.919602 ACCCATAGGAGACACCATTGTT 59.080 45.455 0.00 0.00 42.04 2.83
77 78 3.333680 ACCCATAGGAGACACCATTGTTT 59.666 43.478 0.00 0.00 42.04 2.83
78 79 3.696051 CCCATAGGAGACACCATTGTTTG 59.304 47.826 0.00 0.00 42.04 2.93
79 80 3.129287 CCATAGGAGACACCATTGTTTGC 59.871 47.826 0.00 0.00 42.04 3.68
80 81 2.363306 AGGAGACACCATTGTTTGCA 57.637 45.000 0.00 0.00 42.04 4.08
81 82 2.880443 AGGAGACACCATTGTTTGCAT 58.120 42.857 0.00 0.00 42.04 3.96
82 83 2.821969 AGGAGACACCATTGTTTGCATC 59.178 45.455 0.00 0.00 42.04 3.91
83 84 2.557924 GGAGACACCATTGTTTGCATCA 59.442 45.455 0.00 0.00 35.47 3.07
84 85 3.366679 GGAGACACCATTGTTTGCATCAG 60.367 47.826 0.00 0.00 35.47 2.90
85 86 3.225104 AGACACCATTGTTTGCATCAGT 58.775 40.909 0.00 0.00 35.47 3.41
86 87 3.638160 AGACACCATTGTTTGCATCAGTT 59.362 39.130 0.00 0.00 35.47 3.16
87 88 3.719924 ACACCATTGTTTGCATCAGTTG 58.280 40.909 0.00 0.00 28.43 3.16
88 89 4.046487 ACACCATTGTTTGCATCAGTTGC 61.046 43.478 0.00 0.00 42.12 4.17
95 96 2.757099 GCATCAGTTGCCCCCAGG 60.757 66.667 0.00 0.00 46.15 4.45
105 106 3.431658 CCCCCAGGCAAGGATTCT 58.568 61.111 0.00 0.00 0.00 2.40
106 107 1.228510 CCCCCAGGCAAGGATTCTC 59.771 63.158 0.00 0.00 0.00 2.87
107 108 1.228510 CCCCAGGCAAGGATTCTCC 59.771 63.158 0.00 0.00 36.58 3.71
108 109 1.153086 CCCAGGCAAGGATTCTCCG 60.153 63.158 0.00 0.00 42.75 4.63
109 110 1.604378 CCAGGCAAGGATTCTCCGT 59.396 57.895 0.00 0.00 42.75 4.69
110 111 0.745845 CCAGGCAAGGATTCTCCGTG 60.746 60.000 4.93 4.93 46.68 4.94
111 112 0.250234 CAGGCAAGGATTCTCCGTGA 59.750 55.000 12.42 0.00 46.88 4.35
112 113 2.768834 GGCAAGGATTCTCCGTGAC 58.231 57.895 12.42 6.26 46.31 3.67
113 114 0.744771 GGCAAGGATTCTCCGTGACC 60.745 60.000 12.42 9.21 46.56 4.02
114 115 0.250513 GCAAGGATTCTCCGTGACCT 59.749 55.000 12.42 0.00 46.88 3.85
115 116 1.339151 GCAAGGATTCTCCGTGACCTT 60.339 52.381 12.42 0.00 46.88 3.50
116 117 2.350522 CAAGGATTCTCCGTGACCTTG 58.649 52.381 0.00 0.00 46.88 3.61
117 118 1.645710 AGGATTCTCCGTGACCTTGT 58.354 50.000 0.00 0.00 42.75 3.16
118 119 1.978580 AGGATTCTCCGTGACCTTGTT 59.021 47.619 0.00 0.00 42.75 2.83
119 120 2.028020 AGGATTCTCCGTGACCTTGTTC 60.028 50.000 0.00 0.00 42.75 3.18
120 121 1.993370 GATTCTCCGTGACCTTGTTCG 59.007 52.381 0.00 0.00 0.00 3.95
121 122 0.599204 TTCTCCGTGACCTTGTTCGC 60.599 55.000 0.00 0.00 0.00 4.70
122 123 1.300620 CTCCGTGACCTTGTTCGCA 60.301 57.895 0.00 0.00 0.00 5.10
123 124 0.878523 CTCCGTGACCTTGTTCGCAA 60.879 55.000 0.00 0.00 35.53 4.85
124 125 1.155424 TCCGTGACCTTGTTCGCAAC 61.155 55.000 0.00 0.00 32.95 4.17
125 126 1.433053 CCGTGACCTTGTTCGCAACA 61.433 55.000 0.00 0.00 40.21 3.33
126 127 0.042188 CGTGACCTTGTTCGCAACAG 60.042 55.000 2.73 0.00 43.27 3.16
127 128 1.014352 GTGACCTTGTTCGCAACAGT 58.986 50.000 2.73 0.00 43.27 3.55
128 129 2.206750 GTGACCTTGTTCGCAACAGTA 58.793 47.619 2.73 0.00 43.27 2.74
129 130 2.221055 GTGACCTTGTTCGCAACAGTAG 59.779 50.000 2.73 0.00 43.27 2.57
130 131 2.101750 TGACCTTGTTCGCAACAGTAGA 59.898 45.455 2.73 0.00 43.27 2.59
131 132 3.128349 GACCTTGTTCGCAACAGTAGAA 58.872 45.455 2.73 0.00 43.27 2.10
132 133 3.131396 ACCTTGTTCGCAACAGTAGAAG 58.869 45.455 2.73 0.00 43.27 2.85
133 134 3.181469 ACCTTGTTCGCAACAGTAGAAGA 60.181 43.478 2.73 0.00 43.27 2.87
134 135 3.997021 CCTTGTTCGCAACAGTAGAAGAT 59.003 43.478 2.73 0.00 43.27 2.40
135 136 4.452455 CCTTGTTCGCAACAGTAGAAGATT 59.548 41.667 2.73 0.00 43.27 2.40
136 137 4.990543 TGTTCGCAACAGTAGAAGATTG 57.009 40.909 0.00 0.00 36.25 2.67
137 138 3.186409 TGTTCGCAACAGTAGAAGATTGC 59.814 43.478 0.00 0.00 43.18 3.56
138 139 3.319137 TCGCAACAGTAGAAGATTGCT 57.681 42.857 6.28 0.00 44.18 3.91
139 140 2.995939 TCGCAACAGTAGAAGATTGCTG 59.004 45.455 6.28 0.00 44.18 4.41
140 141 2.995939 CGCAACAGTAGAAGATTGCTGA 59.004 45.455 6.28 0.00 44.18 4.26
141 142 3.433274 CGCAACAGTAGAAGATTGCTGAA 59.567 43.478 6.28 0.00 44.18 3.02
142 143 4.667668 CGCAACAGTAGAAGATTGCTGAAC 60.668 45.833 6.28 0.00 44.18 3.18
143 144 4.214119 GCAACAGTAGAAGATTGCTGAACA 59.786 41.667 0.70 0.00 43.26 3.18
144 145 5.277974 GCAACAGTAGAAGATTGCTGAACAA 60.278 40.000 0.70 0.00 43.26 2.83
145 146 6.369005 CAACAGTAGAAGATTGCTGAACAAG 58.631 40.000 0.00 0.00 42.87 3.16
154 155 2.498892 GCTGAACAAGCGCAAACTG 58.501 52.632 11.47 3.48 43.45 3.16
155 156 0.936297 GCTGAACAAGCGCAAACTGG 60.936 55.000 11.47 0.00 43.45 4.00
156 157 0.662619 CTGAACAAGCGCAAACTGGA 59.337 50.000 11.47 0.00 0.00 3.86
157 158 0.662619 TGAACAAGCGCAAACTGGAG 59.337 50.000 11.47 0.00 0.00 3.86
158 159 0.040067 GAACAAGCGCAAACTGGAGG 60.040 55.000 11.47 0.00 0.00 4.30
159 160 1.455383 AACAAGCGCAAACTGGAGGG 61.455 55.000 11.47 0.00 0.00 4.30
160 161 2.985847 AAGCGCAAACTGGAGGGC 60.986 61.111 11.47 0.00 43.19 5.19
163 164 3.726517 CGCAAACTGGAGGGCGTG 61.727 66.667 0.00 0.00 44.11 5.34
164 165 2.594592 GCAAACTGGAGGGCGTGT 60.595 61.111 0.00 0.00 0.00 4.49
165 166 2.908073 GCAAACTGGAGGGCGTGTG 61.908 63.158 0.00 0.00 0.00 3.82
166 167 2.594592 AAACTGGAGGGCGTGTGC 60.595 61.111 0.00 0.00 41.71 4.57
167 168 4.988598 AACTGGAGGGCGTGTGCG 62.989 66.667 0.00 0.00 44.10 5.34
169 170 4.680237 CTGGAGGGCGTGTGCGAA 62.680 66.667 0.00 0.00 44.10 4.70
170 171 4.680237 TGGAGGGCGTGTGCGAAG 62.680 66.667 0.00 0.00 44.10 3.79
183 184 4.291047 CGAAGCATGTCACTGGCT 57.709 55.556 0.00 0.00 40.14 4.75
184 185 2.084844 CGAAGCATGTCACTGGCTC 58.915 57.895 0.00 0.00 36.76 4.70
185 186 1.690283 CGAAGCATGTCACTGGCTCG 61.690 60.000 0.00 0.00 36.76 5.03
186 187 1.364626 GAAGCATGTCACTGGCTCGG 61.365 60.000 0.00 0.00 36.76 4.63
187 188 2.809861 AAGCATGTCACTGGCTCGGG 62.810 60.000 0.00 0.00 36.76 5.14
188 189 2.821366 CATGTCACTGGCTCGGGC 60.821 66.667 0.00 0.00 37.82 6.13
202 203 4.968370 GGGCCACCGCTACAAATA 57.032 55.556 4.39 0.00 34.44 1.40
203 204 2.702847 GGGCCACCGCTACAAATAG 58.297 57.895 4.39 0.00 34.44 1.73
204 205 0.818040 GGGCCACCGCTACAAATAGG 60.818 60.000 4.39 0.00 34.44 2.57
205 206 0.179468 GGCCACCGCTACAAATAGGA 59.821 55.000 0.00 0.00 34.44 2.94
206 207 1.583054 GCCACCGCTACAAATAGGAG 58.417 55.000 0.00 0.00 0.00 3.69
207 208 1.138266 GCCACCGCTACAAATAGGAGA 59.862 52.381 0.00 0.00 0.00 3.71
208 209 2.803492 GCCACCGCTACAAATAGGAGAG 60.803 54.545 0.00 0.00 0.00 3.20
209 210 2.431057 CCACCGCTACAAATAGGAGAGT 59.569 50.000 0.00 0.00 0.00 3.24
210 211 3.448686 CACCGCTACAAATAGGAGAGTG 58.551 50.000 0.00 0.00 0.00 3.51
211 212 2.159085 ACCGCTACAAATAGGAGAGTGC 60.159 50.000 0.00 0.00 0.00 4.40
212 213 2.474816 CGCTACAAATAGGAGAGTGCC 58.525 52.381 0.00 0.00 0.00 5.01
213 214 2.101582 CGCTACAAATAGGAGAGTGCCT 59.898 50.000 0.00 0.00 42.15 4.75
214 215 3.723260 GCTACAAATAGGAGAGTGCCTC 58.277 50.000 0.00 0.00 39.50 4.70
215 216 3.133003 GCTACAAATAGGAGAGTGCCTCA 59.867 47.826 5.21 0.00 43.76 3.86
216 217 3.618690 ACAAATAGGAGAGTGCCTCAC 57.381 47.619 5.21 0.00 43.76 3.51
217 218 2.906389 ACAAATAGGAGAGTGCCTCACA 59.094 45.455 5.21 0.00 43.76 3.58
218 219 3.521126 ACAAATAGGAGAGTGCCTCACAT 59.479 43.478 5.21 0.00 43.76 3.21
219 220 4.018960 ACAAATAGGAGAGTGCCTCACATT 60.019 41.667 5.21 0.00 43.76 2.71
220 221 4.414337 AATAGGAGAGTGCCTCACATTC 57.586 45.455 5.21 0.00 43.76 2.67
221 222 0.908198 AGGAGAGTGCCTCACATTCC 59.092 55.000 10.04 10.04 43.76 3.01
222 223 0.107459 GGAGAGTGCCTCACATTCCC 60.107 60.000 5.21 0.00 43.76 3.97
223 224 0.615331 GAGAGTGCCTCACATTCCCA 59.385 55.000 5.21 0.00 41.58 4.37
224 225 1.003580 GAGAGTGCCTCACATTCCCAA 59.996 52.381 5.21 0.00 41.58 4.12
225 226 1.637553 AGAGTGCCTCACATTCCCAAT 59.362 47.619 5.21 0.00 35.68 3.16
226 227 1.747355 GAGTGCCTCACATTCCCAATG 59.253 52.381 0.00 0.00 44.48 2.82
227 228 1.355381 AGTGCCTCACATTCCCAATGA 59.645 47.619 3.24 0.00 41.46 2.57
228 229 1.747355 GTGCCTCACATTCCCAATGAG 59.253 52.381 3.24 0.00 41.46 2.90
232 233 2.928334 CTCACATTCCCAATGAGGAGG 58.072 52.381 3.24 0.00 41.46 4.30
233 234 1.565759 TCACATTCCCAATGAGGAGGG 59.434 52.381 3.24 0.00 46.90 4.30
240 241 2.926778 CCAATGAGGAGGGAGATGAC 57.073 55.000 0.00 0.00 41.22 3.06
241 242 1.069823 CCAATGAGGAGGGAGATGACG 59.930 57.143 0.00 0.00 41.22 4.35
242 243 1.069823 CAATGAGGAGGGAGATGACGG 59.930 57.143 0.00 0.00 0.00 4.79
243 244 1.118356 ATGAGGAGGGAGATGACGGC 61.118 60.000 0.00 0.00 0.00 5.68
244 245 2.835431 AGGAGGGAGATGACGGCG 60.835 66.667 4.80 4.80 0.00 6.46
245 246 2.833582 GGAGGGAGATGACGGCGA 60.834 66.667 16.62 0.00 0.00 5.54
246 247 2.203771 GGAGGGAGATGACGGCGAT 61.204 63.158 16.62 0.00 0.00 4.58
247 248 1.742768 GAGGGAGATGACGGCGATT 59.257 57.895 16.62 0.00 0.00 3.34
248 249 0.598680 GAGGGAGATGACGGCGATTG 60.599 60.000 16.62 0.00 0.00 2.67
249 250 2.247437 GGGAGATGACGGCGATTGC 61.247 63.158 16.62 0.00 41.71 3.56
250 251 1.227380 GGAGATGACGGCGATTGCT 60.227 57.895 16.62 5.24 42.25 3.91
260 261 3.736100 CGATTGCTGCCGCCACAA 61.736 61.111 0.00 0.00 34.43 3.33
261 262 2.887360 GATTGCTGCCGCCACAAT 59.113 55.556 7.48 7.48 36.74 2.71
262 263 1.517694 GATTGCTGCCGCCACAATG 60.518 57.895 11.51 0.00 34.28 2.82
263 264 2.894240 GATTGCTGCCGCCACAATGG 62.894 60.000 11.51 0.00 41.55 3.16
264 265 4.972733 TGCTGCCGCCACAATGGT 62.973 61.111 0.00 0.00 40.46 3.55
265 266 4.120331 GCTGCCGCCACAATGGTC 62.120 66.667 0.00 0.00 40.46 4.02
266 267 3.443045 CTGCCGCCACAATGGTCC 61.443 66.667 0.00 0.00 40.46 4.46
267 268 4.277009 TGCCGCCACAATGGTCCA 62.277 61.111 0.00 0.00 40.46 4.02
268 269 3.747976 GCCGCCACAATGGTCCAC 61.748 66.667 0.00 0.00 40.46 4.02
269 270 2.282110 CCGCCACAATGGTCCACA 60.282 61.111 0.00 0.00 40.46 4.17
270 271 1.900981 CCGCCACAATGGTCCACAA 60.901 57.895 0.00 0.00 40.46 3.33
271 272 1.285641 CGCCACAATGGTCCACAAC 59.714 57.895 0.00 0.00 40.46 3.32
279 280 2.668550 GGTCCACAACCTCCGTGC 60.669 66.667 0.00 0.00 45.45 5.34
280 281 2.668550 GTCCACAACCTCCGTGCC 60.669 66.667 0.00 0.00 32.85 5.01
281 282 4.308458 TCCACAACCTCCGTGCCG 62.308 66.667 0.00 0.00 32.85 5.69
293 294 2.904866 GTGCCGGTTCTGCCACAA 60.905 61.111 1.90 0.00 36.97 3.33
294 295 2.594303 TGCCGGTTCTGCCACAAG 60.594 61.111 1.90 0.00 36.97 3.16
295 296 4.043200 GCCGGTTCTGCCACAAGC 62.043 66.667 1.90 0.00 44.14 4.01
326 327 3.049674 CGCACCGACACCAGCATT 61.050 61.111 0.00 0.00 0.00 3.56
327 328 2.562912 GCACCGACACCAGCATTG 59.437 61.111 0.00 0.00 0.00 2.82
328 329 2.562912 CACCGACACCAGCATTGC 59.437 61.111 0.00 0.00 0.00 3.56
329 330 2.672996 ACCGACACCAGCATTGCC 60.673 61.111 4.70 0.00 0.00 4.52
330 331 2.672651 CCGACACCAGCATTGCCA 60.673 61.111 4.70 0.00 0.00 4.92
331 332 2.562912 CGACACCAGCATTGCCAC 59.437 61.111 4.70 0.00 0.00 5.01
332 333 1.968017 CGACACCAGCATTGCCACT 60.968 57.895 4.70 0.00 0.00 4.00
333 334 1.878775 GACACCAGCATTGCCACTC 59.121 57.895 4.70 0.00 0.00 3.51
334 335 1.589716 GACACCAGCATTGCCACTCC 61.590 60.000 4.70 0.00 0.00 3.85
335 336 2.036256 ACCAGCATTGCCACTCCC 59.964 61.111 4.70 0.00 0.00 4.30
336 337 2.757099 CCAGCATTGCCACTCCCC 60.757 66.667 4.70 0.00 0.00 4.81
337 338 2.357836 CAGCATTGCCACTCCCCT 59.642 61.111 4.70 0.00 0.00 4.79
338 339 1.751927 CAGCATTGCCACTCCCCTC 60.752 63.158 4.70 0.00 0.00 4.30
339 340 2.233566 AGCATTGCCACTCCCCTCA 61.234 57.895 4.70 0.00 0.00 3.86
340 341 2.048603 GCATTGCCACTCCCCTCAC 61.049 63.158 0.00 0.00 0.00 3.51
341 342 1.746615 CATTGCCACTCCCCTCACG 60.747 63.158 0.00 0.00 0.00 4.35
342 343 3.628646 ATTGCCACTCCCCTCACGC 62.629 63.158 0.00 0.00 0.00 5.34
344 345 4.329545 GCCACTCCCCTCACGCAA 62.330 66.667 0.00 0.00 0.00 4.85
357 358 2.597217 CGCAAGTTCCTGGGCCAA 60.597 61.111 8.04 0.00 0.00 4.52
358 359 2.919494 CGCAAGTTCCTGGGCCAAC 61.919 63.158 8.04 2.57 0.00 3.77
359 360 1.832167 GCAAGTTCCTGGGCCAACA 60.832 57.895 8.04 0.00 0.00 3.33
360 361 1.398958 GCAAGTTCCTGGGCCAACAA 61.399 55.000 8.04 0.00 0.00 2.83
361 362 0.389025 CAAGTTCCTGGGCCAACAAC 59.611 55.000 8.04 13.23 0.00 3.32
362 363 0.759060 AAGTTCCTGGGCCAACAACC 60.759 55.000 19.02 3.34 0.00 3.77
363 364 2.203422 TTCCTGGGCCAACAACCG 60.203 61.111 8.04 0.00 0.00 4.44
364 365 3.063197 TTCCTGGGCCAACAACCGT 62.063 57.895 8.04 0.00 0.00 4.83
365 366 3.294493 CCTGGGCCAACAACCGTG 61.294 66.667 8.04 0.00 0.00 4.94
366 367 2.203280 CTGGGCCAACAACCGTGA 60.203 61.111 8.04 0.00 0.00 4.35
367 368 1.826054 CTGGGCCAACAACCGTGAA 60.826 57.895 8.04 0.00 0.00 3.18
368 369 1.379977 TGGGCCAACAACCGTGAAA 60.380 52.632 2.13 0.00 0.00 2.69
369 370 0.757188 TGGGCCAACAACCGTGAAAT 60.757 50.000 2.13 0.00 0.00 2.17
370 371 1.249407 GGGCCAACAACCGTGAAATA 58.751 50.000 4.39 0.00 0.00 1.40
371 372 1.068125 GGGCCAACAACCGTGAAATAC 60.068 52.381 4.39 0.00 0.00 1.89
372 373 1.883926 GGCCAACAACCGTGAAATACT 59.116 47.619 0.00 0.00 0.00 2.12
373 374 3.075884 GGCCAACAACCGTGAAATACTA 58.924 45.455 0.00 0.00 0.00 1.82
374 375 3.126343 GGCCAACAACCGTGAAATACTAG 59.874 47.826 0.00 0.00 0.00 2.57
375 376 3.425758 GCCAACAACCGTGAAATACTAGC 60.426 47.826 0.00 0.00 0.00 3.42
376 377 3.126343 CCAACAACCGTGAAATACTAGCC 59.874 47.826 0.00 0.00 0.00 3.93
377 378 2.981898 ACAACCGTGAAATACTAGCCC 58.018 47.619 0.00 0.00 0.00 5.19
378 379 2.303600 ACAACCGTGAAATACTAGCCCA 59.696 45.455 0.00 0.00 0.00 5.36
379 380 2.676342 CAACCGTGAAATACTAGCCCAC 59.324 50.000 0.00 0.00 0.00 4.61
380 381 1.134907 ACCGTGAAATACTAGCCCACG 60.135 52.381 0.00 0.00 46.83 4.94
381 382 1.567504 CGTGAAATACTAGCCCACGG 58.432 55.000 0.00 0.00 44.51 4.94
382 383 1.134907 CGTGAAATACTAGCCCACGGT 60.135 52.381 0.00 0.00 44.51 4.83
383 384 2.547826 GTGAAATACTAGCCCACGGTC 58.452 52.381 0.00 0.00 0.00 4.79
384 385 1.135527 TGAAATACTAGCCCACGGTCG 59.864 52.381 0.00 0.00 0.00 4.79
385 386 1.406539 GAAATACTAGCCCACGGTCGA 59.593 52.381 0.00 0.00 0.00 4.20
386 387 1.700955 AATACTAGCCCACGGTCGAT 58.299 50.000 0.00 0.00 0.00 3.59
387 388 0.959553 ATACTAGCCCACGGTCGATG 59.040 55.000 0.00 0.00 0.00 3.84
388 389 1.731433 TACTAGCCCACGGTCGATGC 61.731 60.000 0.00 0.00 0.00 3.91
389 390 3.792053 CTAGCCCACGGTCGATGCC 62.792 68.421 0.00 0.00 0.00 4.40
405 406 4.161295 CCGGCCGCATGGAAGAGA 62.161 66.667 22.85 0.00 37.49 3.10
406 407 2.125147 CGGCCGCATGGAAGAGAA 60.125 61.111 14.67 0.00 37.49 2.87
407 408 2.464459 CGGCCGCATGGAAGAGAAC 61.464 63.158 14.67 0.00 37.49 3.01
408 409 2.115291 GGCCGCATGGAAGAGAACC 61.115 63.158 0.00 0.00 37.49 3.62
409 410 2.115291 GCCGCATGGAAGAGAACCC 61.115 63.158 0.00 0.00 37.49 4.11
410 411 1.604378 CCGCATGGAAGAGAACCCT 59.396 57.895 0.00 0.00 37.49 4.34
411 412 0.745845 CCGCATGGAAGAGAACCCTG 60.746 60.000 0.00 0.00 37.49 4.45
412 413 0.745845 CGCATGGAAGAGAACCCTGG 60.746 60.000 0.00 0.00 0.00 4.45
413 414 0.329596 GCATGGAAGAGAACCCTGGT 59.670 55.000 0.00 0.00 0.00 4.00
414 415 1.952367 GCATGGAAGAGAACCCTGGTG 60.952 57.143 0.00 0.00 0.00 4.17
415 416 1.352352 CATGGAAGAGAACCCTGGTGT 59.648 52.381 0.00 0.00 0.00 4.16
416 417 1.518367 TGGAAGAGAACCCTGGTGTT 58.482 50.000 0.92 0.92 0.00 3.32
417 418 1.142870 TGGAAGAGAACCCTGGTGTTG 59.857 52.381 5.46 0.00 0.00 3.33
418 419 1.143073 GGAAGAGAACCCTGGTGTTGT 59.857 52.381 5.46 2.07 0.00 3.32
419 420 2.495084 GAAGAGAACCCTGGTGTTGTC 58.505 52.381 13.62 13.62 38.44 3.18
420 421 0.765510 AGAGAACCCTGGTGTTGTCC 59.234 55.000 16.22 5.00 38.82 4.02
421 422 0.602905 GAGAACCCTGGTGTTGTCCG 60.603 60.000 11.58 0.00 33.64 4.79
422 423 2.203294 AACCCTGGTGTTGTCCGC 60.203 61.111 0.00 0.00 0.00 5.54
423 424 2.951475 GAACCCTGGTGTTGTCCGCA 62.951 60.000 5.46 0.00 0.00 5.69
424 425 2.203280 CCCTGGTGTTGTCCGCAA 60.203 61.111 0.00 0.00 0.00 4.85
439 440 2.543578 GCAACAACAGCGATGAGGA 58.456 52.632 8.12 0.00 0.00 3.71
440 441 0.445436 GCAACAACAGCGATGAGGAG 59.555 55.000 8.12 0.00 0.00 3.69
441 442 1.081892 CAACAACAGCGATGAGGAGG 58.918 55.000 8.12 0.00 0.00 4.30
442 443 0.036010 AACAACAGCGATGAGGAGGG 60.036 55.000 8.12 0.00 0.00 4.30
443 444 1.153289 CAACAGCGATGAGGAGGGG 60.153 63.158 8.12 0.00 0.00 4.79
444 445 3.036429 AACAGCGATGAGGAGGGGC 62.036 63.158 8.12 0.00 0.00 5.80
445 446 3.473647 CAGCGATGAGGAGGGGCA 61.474 66.667 0.00 0.00 0.00 5.36
446 447 2.688666 AGCGATGAGGAGGGGCAA 60.689 61.111 0.00 0.00 0.00 4.52
447 448 2.203126 GCGATGAGGAGGGGCAAG 60.203 66.667 0.00 0.00 0.00 4.01
448 449 2.507944 CGATGAGGAGGGGCAAGG 59.492 66.667 0.00 0.00 0.00 3.61
449 450 2.922234 GATGAGGAGGGGCAAGGG 59.078 66.667 0.00 0.00 0.00 3.95
450 451 1.694169 GATGAGGAGGGGCAAGGGA 60.694 63.158 0.00 0.00 0.00 4.20
451 452 1.695597 ATGAGGAGGGGCAAGGGAG 60.696 63.158 0.00 0.00 0.00 4.30
452 453 2.041265 GAGGAGGGGCAAGGGAGA 59.959 66.667 0.00 0.00 0.00 3.71
453 454 2.041928 AGGAGGGGCAAGGGAGAG 59.958 66.667 0.00 0.00 0.00 3.20
454 455 3.093172 GGAGGGGCAAGGGAGAGG 61.093 72.222 0.00 0.00 0.00 3.69
455 456 3.093172 GAGGGGCAAGGGAGAGGG 61.093 72.222 0.00 0.00 0.00 4.30
456 457 3.626596 AGGGGCAAGGGAGAGGGA 61.627 66.667 0.00 0.00 0.00 4.20
457 458 2.614013 GGGGCAAGGGAGAGGGAA 60.614 66.667 0.00 0.00 0.00 3.97
458 459 2.009302 GGGGCAAGGGAGAGGGAAT 61.009 63.158 0.00 0.00 0.00 3.01
459 460 1.584717 GGGGCAAGGGAGAGGGAATT 61.585 60.000 0.00 0.00 0.00 2.17
460 461 0.396278 GGGCAAGGGAGAGGGAATTG 60.396 60.000 0.00 0.00 0.00 2.32
461 462 0.332972 GGCAAGGGAGAGGGAATTGT 59.667 55.000 0.00 0.00 0.00 2.71
462 463 1.683319 GGCAAGGGAGAGGGAATTGTC 60.683 57.143 0.00 0.00 0.00 3.18
463 464 2.014068 GCAAGGGAGAGGGAATTGTCG 61.014 57.143 0.00 0.00 0.00 4.35
464 465 0.912486 AAGGGAGAGGGAATTGTCGG 59.088 55.000 0.00 0.00 0.00 4.79
465 466 0.252742 AGGGAGAGGGAATTGTCGGT 60.253 55.000 0.00 0.00 0.00 4.69
466 467 0.618981 GGGAGAGGGAATTGTCGGTT 59.381 55.000 0.00 0.00 0.00 4.44
467 468 1.835531 GGGAGAGGGAATTGTCGGTTA 59.164 52.381 0.00 0.00 0.00 2.85
468 469 2.158943 GGGAGAGGGAATTGTCGGTTAG 60.159 54.545 0.00 0.00 0.00 2.34
469 470 2.158943 GGAGAGGGAATTGTCGGTTAGG 60.159 54.545 0.00 0.00 0.00 2.69
470 471 2.500504 GAGAGGGAATTGTCGGTTAGGT 59.499 50.000 0.00 0.00 0.00 3.08
471 472 2.910977 AGAGGGAATTGTCGGTTAGGTT 59.089 45.455 0.00 0.00 0.00 3.50
472 473 4.098894 AGAGGGAATTGTCGGTTAGGTTA 58.901 43.478 0.00 0.00 0.00 2.85
473 474 4.081254 AGAGGGAATTGTCGGTTAGGTTAC 60.081 45.833 0.00 0.00 0.00 2.50
474 475 3.842436 AGGGAATTGTCGGTTAGGTTACT 59.158 43.478 0.00 0.00 0.00 2.24
475 476 5.025453 AGGGAATTGTCGGTTAGGTTACTA 58.975 41.667 0.00 0.00 0.00 1.82
476 477 5.664457 AGGGAATTGTCGGTTAGGTTACTAT 59.336 40.000 0.00 0.00 0.00 2.12
477 478 6.157471 AGGGAATTGTCGGTTAGGTTACTATT 59.843 38.462 0.00 0.00 0.00 1.73
478 479 6.481313 GGGAATTGTCGGTTAGGTTACTATTC 59.519 42.308 0.00 0.00 35.06 1.75
479 480 6.199719 GGAATTGTCGGTTAGGTTACTATTCG 59.800 42.308 0.00 0.00 35.97 3.34
480 481 5.643379 TTGTCGGTTAGGTTACTATTCGT 57.357 39.130 0.00 0.00 0.00 3.85
481 482 4.985413 TGTCGGTTAGGTTACTATTCGTG 58.015 43.478 0.00 0.00 0.00 4.35
482 483 4.458989 TGTCGGTTAGGTTACTATTCGTGT 59.541 41.667 0.00 0.00 0.00 4.49
483 484 5.030936 GTCGGTTAGGTTACTATTCGTGTC 58.969 45.833 0.00 0.00 0.00 3.67
484 485 4.031028 CGGTTAGGTTACTATTCGTGTCG 58.969 47.826 0.00 0.00 0.00 4.35
485 486 3.793492 GGTTAGGTTACTATTCGTGTCGC 59.207 47.826 0.00 0.00 0.00 5.19
486 487 4.439289 GGTTAGGTTACTATTCGTGTCGCT 60.439 45.833 0.00 0.00 0.00 4.93
487 488 3.417690 AGGTTACTATTCGTGTCGCTC 57.582 47.619 0.00 0.00 0.00 5.03
488 489 2.107178 GGTTACTATTCGTGTCGCTCG 58.893 52.381 0.00 0.00 0.00 5.03
489 490 2.223112 GGTTACTATTCGTGTCGCTCGA 60.223 50.000 1.02 1.02 35.50 4.04
490 491 3.027710 GTTACTATTCGTGTCGCTCGAG 58.972 50.000 8.45 8.45 38.52 4.04
491 492 0.248134 ACTATTCGTGTCGCTCGAGC 60.248 55.000 27.64 27.64 38.52 5.03
552 553 9.567848 AAGCAAATTTTATGTAGTAAATGGTCG 57.432 29.630 0.00 0.00 32.56 4.79
554 555 9.349145 GCAAATTTTATGTAGTAAATGGTCGTT 57.651 29.630 0.00 0.00 32.56 3.85
601 602 0.343372 TGGGATCTACCTCCTTGGCT 59.657 55.000 0.00 0.00 40.22 4.75
608 609 2.236395 TCTACCTCCTTGGCTTGCTAAC 59.764 50.000 0.00 0.00 40.22 2.34
634 635 5.831702 TTTCTCCTAGTTAAGCTACCTCG 57.168 43.478 0.00 0.00 0.00 4.63
635 636 3.212685 TCTCCTAGTTAAGCTACCTCGC 58.787 50.000 0.00 0.00 0.00 5.03
641 642 2.735134 AGTTAAGCTACCTCGCAAAACG 59.265 45.455 0.00 0.00 45.62 3.60
656 657 2.964924 AAACGCGTGCACTTGCTTCG 62.965 55.000 14.98 10.46 42.66 3.79
678 679 4.318760 CGTACATAATGTCTCCATTTGCCG 60.319 45.833 0.00 0.00 41.50 5.69
682 683 1.549203 ATGTCTCCATTTGCCGCTTT 58.451 45.000 0.00 0.00 0.00 3.51
691 692 0.820871 TTTGCCGCTTTTTCACCAGT 59.179 45.000 0.00 0.00 0.00 4.00
739 740 3.530265 ATAATTGCACATGGTTGGCAG 57.470 42.857 0.00 0.00 38.97 4.85
836 996 3.680937 CGTATGCCCTTTACGTCAGAAAA 59.319 43.478 0.00 0.00 38.06 2.29
1022 1192 1.605712 GGCGACTCACTTTGCAGTAGT 60.606 52.381 0.00 0.00 0.00 2.73
1173 1473 1.022735 GAAGGCGACATCCTCTACGA 58.977 55.000 0.00 0.00 34.82 3.43
1183 1483 0.973632 TCCTCTACGAGCAAAGGCAA 59.026 50.000 0.00 0.00 44.61 4.52
1186 1486 0.034756 TCTACGAGCAAAGGCAAGCA 59.965 50.000 0.00 0.00 44.61 3.91
1338 1641 4.019141 TCTCCGGCCTTGTTTAAAGGATAA 60.019 41.667 8.31 0.00 39.81 1.75
1339 1642 4.266714 TCCGGCCTTGTTTAAAGGATAAG 58.733 43.478 8.31 0.00 39.81 1.73
1354 1669 4.904241 AGGATAAGTATGCCTCTGAATGC 58.096 43.478 0.00 0.00 0.00 3.56
1448 1764 2.278854 GAGGTCTTCAGCATCTTCAGC 58.721 52.381 0.00 0.00 0.00 4.26
1611 1927 1.612726 GCAACCTGACAAGCCTGATCT 60.613 52.381 0.00 0.00 0.00 2.75
1781 2104 9.078990 TCATTGTATGTTAAACCACCAATACAA 57.921 29.630 8.10 8.10 37.55 2.41
1864 2188 1.602311 GGGAATATGCTGACTGGCAG 58.398 55.000 14.16 14.16 45.75 4.85
2543 2983 3.596214 TCCTTTTGCGATCTACACCTTC 58.404 45.455 0.00 0.00 0.00 3.46
2653 3093 0.257039 GTGGCCTTCATCATCCAGGT 59.743 55.000 3.32 0.00 0.00 4.00
2695 3135 8.200024 AGCTAAGCAGGATCTAGAAATAATGA 57.800 34.615 0.00 0.00 0.00 2.57
2867 3307 8.336806 CGTATGAACCAGTACAACTTTGTTTAA 58.663 33.333 0.00 0.00 42.35 1.52
2878 3318 9.030301 GTACAACTTTGTTTAAGCATGAACATT 57.970 29.630 0.00 0.00 42.35 2.71
2943 3387 4.193893 CCCCCGGCATCTGCATCA 62.194 66.667 0.00 0.00 44.36 3.07
2996 3440 9.860898 ATAAGCAAAATATTCAACAAAGTCTCC 57.139 29.630 0.00 0.00 0.00 3.71
3003 3447 8.697507 AATATTCAACAAAGTCTCCAAGTCTT 57.302 30.769 0.00 0.00 0.00 3.01
3055 3500 2.285834 GCATGAAAACGAGATAGCCACG 60.286 50.000 0.00 0.00 0.00 4.94
3119 3564 1.745232 TACATGACCGCCATCCAAAC 58.255 50.000 0.00 0.00 31.94 2.93
3134 3579 1.743394 CCAAACCGGTTGAAGATAGCC 59.257 52.381 23.08 0.00 39.87 3.93
3135 3580 1.743394 CAAACCGGTTGAAGATAGCCC 59.257 52.381 23.08 0.00 39.87 5.19
3153 3598 1.445582 CGTGCTACCGTCTCCCAAC 60.446 63.158 0.00 0.00 0.00 3.77
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
5 6 2.858745 TCCTTTTTGTTCCCTTCTCGG 58.141 47.619 0.00 0.00 0.00 4.63
6 7 4.607955 GTTTCCTTTTTGTTCCCTTCTCG 58.392 43.478 0.00 0.00 0.00 4.04
7 8 4.337274 TCGTTTCCTTTTTGTTCCCTTCTC 59.663 41.667 0.00 0.00 0.00 2.87
8 9 4.274978 TCGTTTCCTTTTTGTTCCCTTCT 58.725 39.130 0.00 0.00 0.00 2.85
9 10 4.642445 TCGTTTCCTTTTTGTTCCCTTC 57.358 40.909 0.00 0.00 0.00 3.46
10 11 6.718522 TTATCGTTTCCTTTTTGTTCCCTT 57.281 33.333 0.00 0.00 0.00 3.95
11 12 6.687604 CATTATCGTTTCCTTTTTGTTCCCT 58.312 36.000 0.00 0.00 0.00 4.20
12 13 5.347635 GCATTATCGTTTCCTTTTTGTTCCC 59.652 40.000 0.00 0.00 0.00 3.97
13 14 5.347635 GGCATTATCGTTTCCTTTTTGTTCC 59.652 40.000 0.00 0.00 0.00 3.62
14 15 6.156519 AGGCATTATCGTTTCCTTTTTGTTC 58.843 36.000 0.00 0.00 0.00 3.18
15 16 6.096673 AGGCATTATCGTTTCCTTTTTGTT 57.903 33.333 0.00 0.00 0.00 2.83
16 17 5.722021 AGGCATTATCGTTTCCTTTTTGT 57.278 34.783 0.00 0.00 0.00 2.83
17 18 6.155827 TGAAGGCATTATCGTTTCCTTTTTG 58.844 36.000 0.00 0.00 37.28 2.44
18 19 6.339587 TGAAGGCATTATCGTTTCCTTTTT 57.660 33.333 0.00 0.00 37.28 1.94
19 20 5.975693 TGAAGGCATTATCGTTTCCTTTT 57.024 34.783 0.00 0.00 37.28 2.27
20 21 5.105756 CCTTGAAGGCATTATCGTTTCCTTT 60.106 40.000 0.00 0.00 37.28 3.11
21 22 4.399303 CCTTGAAGGCATTATCGTTTCCTT 59.601 41.667 0.00 0.00 39.63 3.36
22 23 3.947834 CCTTGAAGGCATTATCGTTTCCT 59.052 43.478 0.00 0.00 0.00 3.36
23 24 3.945285 TCCTTGAAGGCATTATCGTTTCC 59.055 43.478 6.30 0.00 34.61 3.13
24 25 5.354234 TCTTCCTTGAAGGCATTATCGTTTC 59.646 40.000 6.30 0.00 39.82 2.78
25 26 5.253330 TCTTCCTTGAAGGCATTATCGTTT 58.747 37.500 6.30 0.00 39.82 3.60
26 27 4.843728 TCTTCCTTGAAGGCATTATCGTT 58.156 39.130 6.30 0.00 39.82 3.85
27 28 4.162320 TCTCTTCCTTGAAGGCATTATCGT 59.838 41.667 6.30 0.00 39.82 3.73
28 29 4.697514 TCTCTTCCTTGAAGGCATTATCG 58.302 43.478 6.30 0.00 39.82 2.92
29 30 6.204495 GTCATCTCTTCCTTGAAGGCATTATC 59.796 42.308 6.30 0.00 39.82 1.75
30 31 6.060788 GTCATCTCTTCCTTGAAGGCATTAT 58.939 40.000 6.30 0.00 39.82 1.28
31 32 5.045651 TGTCATCTCTTCCTTGAAGGCATTA 60.046 40.000 6.30 0.00 39.82 1.90
32 33 4.263639 TGTCATCTCTTCCTTGAAGGCATT 60.264 41.667 6.30 0.00 39.82 3.56
33 34 3.265221 TGTCATCTCTTCCTTGAAGGCAT 59.735 43.478 6.30 0.00 39.82 4.40
34 35 2.639347 TGTCATCTCTTCCTTGAAGGCA 59.361 45.455 6.30 0.00 39.82 4.75
35 36 3.006247 GTGTCATCTCTTCCTTGAAGGC 58.994 50.000 6.30 0.00 39.82 4.35
36 37 3.604582 GGTGTCATCTCTTCCTTGAAGG 58.395 50.000 4.45 4.45 39.82 3.46
37 38 3.008375 TGGGTGTCATCTCTTCCTTGAAG 59.992 47.826 0.00 0.00 40.65 3.02
38 39 2.978978 TGGGTGTCATCTCTTCCTTGAA 59.021 45.455 0.00 0.00 0.00 2.69
39 40 2.619931 TGGGTGTCATCTCTTCCTTGA 58.380 47.619 0.00 0.00 0.00 3.02
40 41 3.641434 ATGGGTGTCATCTCTTCCTTG 57.359 47.619 0.00 0.00 0.00 3.61
41 42 3.713764 CCTATGGGTGTCATCTCTTCCTT 59.286 47.826 0.00 0.00 37.30 3.36
42 43 3.051803 TCCTATGGGTGTCATCTCTTCCT 60.052 47.826 0.00 0.00 37.30 3.36
43 44 3.309296 TCCTATGGGTGTCATCTCTTCC 58.691 50.000 0.00 0.00 37.30 3.46
44 45 4.038642 GTCTCCTATGGGTGTCATCTCTTC 59.961 50.000 0.00 0.00 37.30 2.87
45 46 3.964031 GTCTCCTATGGGTGTCATCTCTT 59.036 47.826 0.00 0.00 37.30 2.85
46 47 3.052566 TGTCTCCTATGGGTGTCATCTCT 60.053 47.826 0.00 0.00 37.30 3.10
47 48 3.068873 GTGTCTCCTATGGGTGTCATCTC 59.931 52.174 0.00 0.00 37.30 2.75
48 49 3.034635 GTGTCTCCTATGGGTGTCATCT 58.965 50.000 0.00 0.00 37.30 2.90
49 50 2.103263 GGTGTCTCCTATGGGTGTCATC 59.897 54.545 0.00 0.00 37.30 2.92
50 51 2.119495 GGTGTCTCCTATGGGTGTCAT 58.881 52.381 0.00 0.00 39.78 3.06
51 52 1.203250 TGGTGTCTCCTATGGGTGTCA 60.203 52.381 0.00 0.00 37.07 3.58
52 53 1.568504 TGGTGTCTCCTATGGGTGTC 58.431 55.000 0.00 0.00 37.07 3.67
53 54 2.239654 CAATGGTGTCTCCTATGGGTGT 59.760 50.000 0.00 0.00 37.07 4.16
54 55 2.239654 ACAATGGTGTCTCCTATGGGTG 59.760 50.000 0.00 0.00 37.07 4.61
55 56 2.562296 ACAATGGTGTCTCCTATGGGT 58.438 47.619 0.00 0.00 37.07 4.51
56 57 3.652057 AACAATGGTGTCTCCTATGGG 57.348 47.619 0.00 0.00 36.80 4.00
57 58 3.129287 GCAAACAATGGTGTCTCCTATGG 59.871 47.826 0.00 0.00 36.80 2.74
58 59 3.758023 TGCAAACAATGGTGTCTCCTATG 59.242 43.478 0.00 0.00 36.80 2.23
59 60 4.032960 TGCAAACAATGGTGTCTCCTAT 57.967 40.909 0.00 0.00 36.80 2.57
60 61 3.500448 TGCAAACAATGGTGTCTCCTA 57.500 42.857 0.00 0.00 36.80 2.94
61 62 2.363306 TGCAAACAATGGTGTCTCCT 57.637 45.000 0.00 0.00 36.80 3.69
62 63 2.557924 TGATGCAAACAATGGTGTCTCC 59.442 45.455 0.00 0.00 36.80 3.71
63 64 3.254166 ACTGATGCAAACAATGGTGTCTC 59.746 43.478 0.00 0.00 36.80 3.36
64 65 3.225104 ACTGATGCAAACAATGGTGTCT 58.775 40.909 0.00 0.00 36.80 3.41
65 66 3.648339 ACTGATGCAAACAATGGTGTC 57.352 42.857 0.00 0.00 36.80 3.67
66 67 3.719924 CAACTGATGCAAACAATGGTGT 58.280 40.909 0.00 0.00 40.75 4.16
88 89 1.228510 GAGAATCCTTGCCTGGGGG 59.771 63.158 0.00 0.00 0.00 5.40
89 90 4.995594 GAGAATCCTTGCCTGGGG 57.004 61.111 0.00 0.00 0.00 4.96
100 101 1.993370 CGAACAAGGTCACGGAGAATC 59.007 52.381 0.00 0.00 0.00 2.52
101 102 1.939838 GCGAACAAGGTCACGGAGAAT 60.940 52.381 0.00 0.00 0.00 2.40
102 103 0.599204 GCGAACAAGGTCACGGAGAA 60.599 55.000 0.00 0.00 0.00 2.87
103 104 1.006571 GCGAACAAGGTCACGGAGA 60.007 57.895 0.00 0.00 0.00 3.71
104 105 0.878523 TTGCGAACAAGGTCACGGAG 60.879 55.000 0.00 0.00 0.00 4.63
105 106 1.144276 TTGCGAACAAGGTCACGGA 59.856 52.632 0.00 0.00 0.00 4.69
106 107 1.278637 GTTGCGAACAAGGTCACGG 59.721 57.895 0.00 0.00 36.16 4.94
107 108 0.042188 CTGTTGCGAACAAGGTCACG 60.042 55.000 0.00 0.00 41.61 4.35
108 109 1.014352 ACTGTTGCGAACAAGGTCAC 58.986 50.000 0.00 0.00 41.61 3.67
109 110 2.101750 TCTACTGTTGCGAACAAGGTCA 59.898 45.455 0.00 0.00 41.61 4.02
110 111 2.750948 TCTACTGTTGCGAACAAGGTC 58.249 47.619 0.00 0.00 41.61 3.85
111 112 2.902705 TCTACTGTTGCGAACAAGGT 57.097 45.000 0.00 2.65 41.61 3.50
112 113 3.390135 TCTTCTACTGTTGCGAACAAGG 58.610 45.455 0.00 0.00 41.61 3.61
113 114 5.377358 CAATCTTCTACTGTTGCGAACAAG 58.623 41.667 0.00 0.72 41.61 3.16
114 115 4.319477 GCAATCTTCTACTGTTGCGAACAA 60.319 41.667 0.00 0.00 41.61 2.83
115 116 3.186409 GCAATCTTCTACTGTTGCGAACA 59.814 43.478 0.00 0.00 37.76 3.18
116 117 3.737305 GCAATCTTCTACTGTTGCGAAC 58.263 45.455 0.00 0.00 37.76 3.95
120 121 4.214119 TGTTCAGCAATCTTCTACTGTTGC 59.786 41.667 0.99 0.99 45.37 4.17
121 122 5.929697 TGTTCAGCAATCTTCTACTGTTG 57.070 39.130 0.00 0.00 0.00 3.33
122 123 6.551385 CTTGTTCAGCAATCTTCTACTGTT 57.449 37.500 0.00 0.00 36.36 3.16
136 137 0.936297 CCAGTTTGCGCTTGTTCAGC 60.936 55.000 9.73 0.00 46.31 4.26
137 138 0.662619 TCCAGTTTGCGCTTGTTCAG 59.337 50.000 9.73 0.00 0.00 3.02
138 139 0.662619 CTCCAGTTTGCGCTTGTTCA 59.337 50.000 9.73 0.00 0.00 3.18
139 140 0.040067 CCTCCAGTTTGCGCTTGTTC 60.040 55.000 9.73 0.00 0.00 3.18
140 141 1.455383 CCCTCCAGTTTGCGCTTGTT 61.455 55.000 9.73 0.00 0.00 2.83
141 142 1.898574 CCCTCCAGTTTGCGCTTGT 60.899 57.895 9.73 0.00 0.00 3.16
142 143 2.956987 CCCTCCAGTTTGCGCTTG 59.043 61.111 9.73 1.68 0.00 4.01
143 144 2.985847 GCCCTCCAGTTTGCGCTT 60.986 61.111 9.73 0.00 0.00 4.68
147 148 2.594592 ACACGCCCTCCAGTTTGC 60.595 61.111 0.00 0.00 0.00 3.68
148 149 2.908073 GCACACGCCCTCCAGTTTG 61.908 63.158 0.00 0.00 0.00 2.93
149 150 2.594592 GCACACGCCCTCCAGTTT 60.595 61.111 0.00 0.00 0.00 2.66
150 151 4.988598 CGCACACGCCCTCCAGTT 62.989 66.667 0.00 0.00 33.11 3.16
152 153 4.680237 TTCGCACACGCCCTCCAG 62.680 66.667 0.00 0.00 39.84 3.86
153 154 4.680237 CTTCGCACACGCCCTCCA 62.680 66.667 0.00 0.00 39.84 3.86
156 157 4.704833 ATGCTTCGCACACGCCCT 62.705 61.111 0.00 0.00 43.04 5.19
157 158 4.465512 CATGCTTCGCACACGCCC 62.466 66.667 0.00 0.00 43.04 6.13
158 159 3.651480 GACATGCTTCGCACACGCC 62.651 63.158 0.00 0.00 43.04 5.68
159 160 2.202222 GACATGCTTCGCACACGC 60.202 61.111 0.00 0.00 43.04 5.34
160 161 1.154599 GTGACATGCTTCGCACACG 60.155 57.895 0.00 0.00 43.04 4.49
161 162 0.110509 CAGTGACATGCTTCGCACAC 60.111 55.000 0.00 0.00 43.04 3.82
162 163 1.229975 CCAGTGACATGCTTCGCACA 61.230 55.000 0.00 0.00 43.04 4.57
163 164 1.499056 CCAGTGACATGCTTCGCAC 59.501 57.895 0.00 0.00 43.04 5.34
164 165 2.327343 GCCAGTGACATGCTTCGCA 61.327 57.895 0.00 0.00 44.86 5.10
165 166 1.975363 GAGCCAGTGACATGCTTCGC 61.975 60.000 0.49 0.00 34.99 4.70
166 167 1.690283 CGAGCCAGTGACATGCTTCG 61.690 60.000 0.49 3.08 34.99 3.79
167 168 1.364626 CCGAGCCAGTGACATGCTTC 61.365 60.000 0.49 0.00 34.99 3.86
168 169 1.376424 CCGAGCCAGTGACATGCTT 60.376 57.895 0.49 0.00 34.99 3.91
169 170 2.267006 CCGAGCCAGTGACATGCT 59.733 61.111 0.00 0.00 38.24 3.79
170 171 2.821366 CCCGAGCCAGTGACATGC 60.821 66.667 0.00 0.00 0.00 4.06
171 172 2.821366 GCCCGAGCCAGTGACATG 60.821 66.667 0.00 0.00 0.00 3.21
185 186 0.818040 CCTATTTGTAGCGGTGGCCC 60.818 60.000 0.00 0.00 41.24 5.80
186 187 0.179468 TCCTATTTGTAGCGGTGGCC 59.821 55.000 0.00 0.00 41.24 5.36
187 188 1.138266 TCTCCTATTTGTAGCGGTGGC 59.862 52.381 0.00 0.00 40.37 5.01
188 189 2.431057 ACTCTCCTATTTGTAGCGGTGG 59.569 50.000 0.00 0.00 0.00 4.61
189 190 3.448686 CACTCTCCTATTTGTAGCGGTG 58.551 50.000 0.00 0.00 0.00 4.94
190 191 2.159085 GCACTCTCCTATTTGTAGCGGT 60.159 50.000 0.00 0.00 0.00 5.68
191 192 2.474816 GCACTCTCCTATTTGTAGCGG 58.525 52.381 0.00 0.00 0.00 5.52
192 193 2.101582 AGGCACTCTCCTATTTGTAGCG 59.898 50.000 0.00 0.00 33.95 4.26
193 194 3.828875 AGGCACTCTCCTATTTGTAGC 57.171 47.619 0.00 0.00 33.95 3.58
204 205 6.679164 TCATTGGGAATGTGAGGCACTCTC 62.679 50.000 0.00 1.67 46.12 3.20
205 206 4.905560 TCATTGGGAATGTGAGGCACTCT 61.906 47.826 0.00 0.00 46.12 3.24
206 207 2.618816 TCATTGGGAATGTGAGGCACTC 60.619 50.000 0.00 0.00 46.14 3.51
207 208 1.355381 TCATTGGGAATGTGAGGCACT 59.645 47.619 0.00 0.00 40.26 4.40
208 209 1.747355 CTCATTGGGAATGTGAGGCAC 59.253 52.381 0.00 0.00 39.87 5.01
209 210 2.133281 CTCATTGGGAATGTGAGGCA 57.867 50.000 0.00 0.00 39.87 4.75
212 213 2.422519 CCCTCCTCATTGGGAATGTGAG 60.423 54.545 0.00 0.00 46.15 3.51
213 214 1.565759 CCCTCCTCATTGGGAATGTGA 59.434 52.381 0.00 0.00 46.15 3.58
214 215 2.062971 CCCTCCTCATTGGGAATGTG 57.937 55.000 0.00 0.00 46.15 3.21
220 221 1.419387 GTCATCTCCCTCCTCATTGGG 59.581 57.143 0.00 0.00 44.66 4.12
221 222 1.069823 CGTCATCTCCCTCCTCATTGG 59.930 57.143 0.00 0.00 37.10 3.16
222 223 1.069823 CCGTCATCTCCCTCCTCATTG 59.930 57.143 0.00 0.00 0.00 2.82
223 224 1.418334 CCGTCATCTCCCTCCTCATT 58.582 55.000 0.00 0.00 0.00 2.57
224 225 1.118356 GCCGTCATCTCCCTCCTCAT 61.118 60.000 0.00 0.00 0.00 2.90
225 226 1.758514 GCCGTCATCTCCCTCCTCA 60.759 63.158 0.00 0.00 0.00 3.86
226 227 2.851071 CGCCGTCATCTCCCTCCTC 61.851 68.421 0.00 0.00 0.00 3.71
227 228 2.648613 ATCGCCGTCATCTCCCTCCT 62.649 60.000 0.00 0.00 0.00 3.69
228 229 1.749334 AATCGCCGTCATCTCCCTCC 61.749 60.000 0.00 0.00 0.00 4.30
229 230 0.598680 CAATCGCCGTCATCTCCCTC 60.599 60.000 0.00 0.00 0.00 4.30
230 231 1.443407 CAATCGCCGTCATCTCCCT 59.557 57.895 0.00 0.00 0.00 4.20
231 232 2.247437 GCAATCGCCGTCATCTCCC 61.247 63.158 0.00 0.00 0.00 4.30
232 233 1.227380 AGCAATCGCCGTCATCTCC 60.227 57.895 0.00 0.00 39.83 3.71
233 234 1.930100 CAGCAATCGCCGTCATCTC 59.070 57.895 0.00 0.00 39.83 2.75
234 235 2.176273 GCAGCAATCGCCGTCATCT 61.176 57.895 0.00 0.00 39.83 2.90
235 236 2.325857 GCAGCAATCGCCGTCATC 59.674 61.111 0.00 0.00 39.83 2.92
236 237 3.204827 GGCAGCAATCGCCGTCAT 61.205 61.111 0.00 0.00 40.35 3.06
248 249 4.120331 GACCATTGTGGCGGCAGC 62.120 66.667 13.91 8.33 42.67 5.25
249 250 3.443045 GGACCATTGTGGCGGCAG 61.443 66.667 13.91 2.02 42.67 4.85
250 251 4.277009 TGGACCATTGTGGCGGCA 62.277 61.111 7.97 7.97 42.67 5.69
251 252 3.747976 GTGGACCATTGTGGCGGC 61.748 66.667 0.00 0.00 42.67 6.53
252 253 1.900981 TTGTGGACCATTGTGGCGG 60.901 57.895 0.00 0.00 42.67 6.13
253 254 1.285641 GTTGTGGACCATTGTGGCG 59.714 57.895 0.00 0.00 42.67 5.69
263 264 2.668550 GGCACGGAGGTTGTGGAC 60.669 66.667 0.00 0.00 37.80 4.02
277 278 2.594303 CTTGTGGCAGAACCGGCA 60.594 61.111 0.00 0.00 43.94 5.69
278 279 4.043200 GCTTGTGGCAGAACCGGC 62.043 66.667 0.00 0.00 43.94 6.13
287 288 3.606065 CTTCGCTGCTGCTTGTGGC 62.606 63.158 14.03 0.00 42.22 5.01
288 289 2.559840 CTTCGCTGCTGCTTGTGG 59.440 61.111 14.03 0.00 36.97 4.17
289 290 2.126965 GCTTCGCTGCTGCTTGTG 60.127 61.111 14.03 0.78 36.97 3.33
290 291 3.360340 GGCTTCGCTGCTGCTTGT 61.360 61.111 14.03 0.00 36.97 3.16
291 292 4.456253 CGGCTTCGCTGCTGCTTG 62.456 66.667 14.03 4.72 36.97 4.01
309 310 3.049674 AATGCTGGTGTCGGTGCG 61.050 61.111 0.00 0.00 0.00 5.34
310 311 2.562912 CAATGCTGGTGTCGGTGC 59.437 61.111 0.00 0.00 0.00 5.01
311 312 2.562912 GCAATGCTGGTGTCGGTG 59.437 61.111 0.00 0.00 0.00 4.94
312 313 2.672996 GGCAATGCTGGTGTCGGT 60.673 61.111 4.82 0.00 0.00 4.69
313 314 2.672651 TGGCAATGCTGGTGTCGG 60.673 61.111 4.82 0.00 0.00 4.79
314 315 1.915614 GAGTGGCAATGCTGGTGTCG 61.916 60.000 4.82 0.00 0.00 4.35
315 316 1.589716 GGAGTGGCAATGCTGGTGTC 61.590 60.000 4.82 0.00 0.00 3.67
316 317 1.604593 GGAGTGGCAATGCTGGTGT 60.605 57.895 4.82 0.00 0.00 4.16
317 318 2.345760 GGGAGTGGCAATGCTGGTG 61.346 63.158 6.38 0.00 0.00 4.17
318 319 2.036256 GGGAGTGGCAATGCTGGT 59.964 61.111 6.38 0.00 0.00 4.00
319 320 2.757099 GGGGAGTGGCAATGCTGG 60.757 66.667 6.38 0.00 0.00 4.85
320 321 1.751927 GAGGGGAGTGGCAATGCTG 60.752 63.158 6.38 0.00 0.00 4.41
321 322 2.233566 TGAGGGGAGTGGCAATGCT 61.234 57.895 6.38 0.00 0.00 3.79
322 323 2.048603 GTGAGGGGAGTGGCAATGC 61.049 63.158 0.00 0.00 0.00 3.56
323 324 1.746615 CGTGAGGGGAGTGGCAATG 60.747 63.158 0.00 0.00 0.00 2.82
324 325 2.671070 CGTGAGGGGAGTGGCAAT 59.329 61.111 0.00 0.00 0.00 3.56
325 326 4.329545 GCGTGAGGGGAGTGGCAA 62.330 66.667 0.00 0.00 0.00 4.52
327 328 4.329545 TTGCGTGAGGGGAGTGGC 62.330 66.667 0.00 0.00 0.00 5.01
328 329 2.046892 CTTGCGTGAGGGGAGTGG 60.047 66.667 0.00 0.00 0.00 4.00
329 330 0.951040 GAACTTGCGTGAGGGGAGTG 60.951 60.000 0.00 0.00 0.00 3.51
330 331 1.371558 GAACTTGCGTGAGGGGAGT 59.628 57.895 0.00 0.00 0.00 3.85
331 332 1.376037 GGAACTTGCGTGAGGGGAG 60.376 63.158 0.00 0.00 0.00 4.30
332 333 1.841556 AGGAACTTGCGTGAGGGGA 60.842 57.895 0.00 0.00 27.25 4.81
333 334 1.672356 CAGGAACTTGCGTGAGGGG 60.672 63.158 0.00 0.00 34.60 4.79
334 335 1.672356 CCAGGAACTTGCGTGAGGG 60.672 63.158 0.00 0.00 34.60 4.30
335 336 1.672356 CCCAGGAACTTGCGTGAGG 60.672 63.158 0.00 0.00 34.60 3.86
336 337 2.328099 GCCCAGGAACTTGCGTGAG 61.328 63.158 0.00 0.00 34.60 3.51
337 338 2.281484 GCCCAGGAACTTGCGTGA 60.281 61.111 0.00 0.00 34.60 4.35
338 339 3.365265 GGCCCAGGAACTTGCGTG 61.365 66.667 0.00 0.00 34.60 5.34
339 340 3.429372 TTGGCCCAGGAACTTGCGT 62.429 57.895 0.00 0.00 34.60 5.24
340 341 2.597217 TTGGCCCAGGAACTTGCG 60.597 61.111 0.00 0.00 34.60 4.85
341 342 1.398958 TTGTTGGCCCAGGAACTTGC 61.399 55.000 0.00 0.00 34.60 4.01
342 343 0.389025 GTTGTTGGCCCAGGAACTTG 59.611 55.000 0.00 0.00 34.60 3.16
343 344 0.759060 GGTTGTTGGCCCAGGAACTT 60.759 55.000 0.00 0.00 34.60 2.66
344 345 1.152546 GGTTGTTGGCCCAGGAACT 60.153 57.895 0.00 0.00 43.88 3.01
345 346 2.561037 CGGTTGTTGGCCCAGGAAC 61.561 63.158 0.00 0.00 0.00 3.62
346 347 2.203422 CGGTTGTTGGCCCAGGAA 60.203 61.111 0.00 0.00 0.00 3.36
347 348 3.494254 ACGGTTGTTGGCCCAGGA 61.494 61.111 0.00 0.00 0.00 3.86
348 349 3.294493 CACGGTTGTTGGCCCAGG 61.294 66.667 0.00 0.00 0.00 4.45
349 350 1.388065 TTTCACGGTTGTTGGCCCAG 61.388 55.000 0.00 0.00 0.00 4.45
350 351 0.757188 ATTTCACGGTTGTTGGCCCA 60.757 50.000 0.00 0.00 0.00 5.36
351 352 1.068125 GTATTTCACGGTTGTTGGCCC 60.068 52.381 0.00 0.00 0.00 5.80
352 353 1.883926 AGTATTTCACGGTTGTTGGCC 59.116 47.619 0.00 0.00 0.00 5.36
353 354 3.425758 GCTAGTATTTCACGGTTGTTGGC 60.426 47.826 0.00 0.00 0.00 4.52
354 355 3.126343 GGCTAGTATTTCACGGTTGTTGG 59.874 47.826 0.00 0.00 0.00 3.77
355 356 3.126343 GGGCTAGTATTTCACGGTTGTTG 59.874 47.826 0.00 0.00 0.00 3.33
356 357 3.244630 TGGGCTAGTATTTCACGGTTGTT 60.245 43.478 0.00 0.00 0.00 2.83
357 358 2.303600 TGGGCTAGTATTTCACGGTTGT 59.696 45.455 0.00 0.00 0.00 3.32
358 359 2.676342 GTGGGCTAGTATTTCACGGTTG 59.324 50.000 0.00 0.00 0.00 3.77
359 360 2.675889 CGTGGGCTAGTATTTCACGGTT 60.676 50.000 0.00 0.00 44.79 4.44
360 361 1.134907 CGTGGGCTAGTATTTCACGGT 60.135 52.381 0.00 0.00 44.79 4.83
361 362 1.567504 CGTGGGCTAGTATTTCACGG 58.432 55.000 0.00 0.00 44.79 4.94
363 364 2.547826 GACCGTGGGCTAGTATTTCAC 58.452 52.381 0.00 0.00 0.00 3.18
364 365 1.135527 CGACCGTGGGCTAGTATTTCA 59.864 52.381 0.00 0.00 0.00 2.69
365 366 1.406539 TCGACCGTGGGCTAGTATTTC 59.593 52.381 0.00 0.00 0.00 2.17
366 367 1.477553 TCGACCGTGGGCTAGTATTT 58.522 50.000 0.00 0.00 0.00 1.40
367 368 1.340248 CATCGACCGTGGGCTAGTATT 59.660 52.381 0.00 0.00 0.00 1.89
368 369 0.959553 CATCGACCGTGGGCTAGTAT 59.040 55.000 0.00 0.00 0.00 2.12
369 370 1.731433 GCATCGACCGTGGGCTAGTA 61.731 60.000 0.00 0.00 0.00 1.82
370 371 3.077519 GCATCGACCGTGGGCTAGT 62.078 63.158 0.00 0.00 0.00 2.57
371 372 2.279517 GCATCGACCGTGGGCTAG 60.280 66.667 0.00 0.00 0.00 3.42
372 373 3.845259 GGCATCGACCGTGGGCTA 61.845 66.667 0.00 0.00 0.00 3.93
388 389 3.680620 TTCTCTTCCATGCGGCCGG 62.681 63.158 29.38 10.44 0.00 6.13
389 390 2.125147 TTCTCTTCCATGCGGCCG 60.125 61.111 24.05 24.05 0.00 6.13
390 391 2.115291 GGTTCTCTTCCATGCGGCC 61.115 63.158 0.00 0.00 0.00 6.13
391 392 2.115291 GGGTTCTCTTCCATGCGGC 61.115 63.158 0.00 0.00 0.00 6.53
392 393 0.745845 CAGGGTTCTCTTCCATGCGG 60.746 60.000 0.00 0.00 30.29 5.69
393 394 0.745845 CCAGGGTTCTCTTCCATGCG 60.746 60.000 0.00 0.00 35.72 4.73
394 395 0.329596 ACCAGGGTTCTCTTCCATGC 59.670 55.000 0.00 0.00 35.72 4.06
395 396 1.352352 ACACCAGGGTTCTCTTCCATG 59.648 52.381 0.00 0.00 36.64 3.66
396 397 1.747444 ACACCAGGGTTCTCTTCCAT 58.253 50.000 0.00 0.00 0.00 3.41
397 398 1.142870 CAACACCAGGGTTCTCTTCCA 59.857 52.381 0.00 0.00 0.00 3.53
398 399 1.143073 ACAACACCAGGGTTCTCTTCC 59.857 52.381 0.00 0.00 0.00 3.46
399 400 2.495084 GACAACACCAGGGTTCTCTTC 58.505 52.381 0.00 0.00 0.00 2.87
400 401 1.143073 GGACAACACCAGGGTTCTCTT 59.857 52.381 0.00 0.00 0.00 2.85
401 402 0.765510 GGACAACACCAGGGTTCTCT 59.234 55.000 0.00 0.00 0.00 3.10
402 403 0.602905 CGGACAACACCAGGGTTCTC 60.603 60.000 0.00 0.00 0.00 2.87
403 404 1.450211 CGGACAACACCAGGGTTCT 59.550 57.895 0.00 0.00 0.00 3.01
404 405 2.258726 GCGGACAACACCAGGGTTC 61.259 63.158 0.00 0.00 0.00 3.62
405 406 2.203294 GCGGACAACACCAGGGTT 60.203 61.111 0.00 0.00 0.00 4.11
406 407 3.050354 TTGCGGACAACACCAGGGT 62.050 57.895 0.00 0.00 0.00 4.34
407 408 2.203280 TTGCGGACAACACCAGGG 60.203 61.111 0.00 0.00 0.00 4.45
421 422 0.445436 CTCCTCATCGCTGTTGTTGC 59.555 55.000 0.00 0.00 0.00 4.17
422 423 1.081892 CCTCCTCATCGCTGTTGTTG 58.918 55.000 0.00 0.00 0.00 3.33
423 424 0.036010 CCCTCCTCATCGCTGTTGTT 60.036 55.000 0.00 0.00 0.00 2.83
424 425 1.599047 CCCTCCTCATCGCTGTTGT 59.401 57.895 0.00 0.00 0.00 3.32
425 426 1.153289 CCCCTCCTCATCGCTGTTG 60.153 63.158 0.00 0.00 0.00 3.33
426 427 3.036429 GCCCCTCCTCATCGCTGTT 62.036 63.158 0.00 0.00 0.00 3.16
427 428 3.474570 GCCCCTCCTCATCGCTGT 61.475 66.667 0.00 0.00 0.00 4.40
428 429 2.937379 CTTGCCCCTCCTCATCGCTG 62.937 65.000 0.00 0.00 0.00 5.18
429 430 2.688666 TTGCCCCTCCTCATCGCT 60.689 61.111 0.00 0.00 0.00 4.93
430 431 2.203126 CTTGCCCCTCCTCATCGC 60.203 66.667 0.00 0.00 0.00 4.58
431 432 2.507944 CCTTGCCCCTCCTCATCG 59.492 66.667 0.00 0.00 0.00 3.84
432 433 1.694169 TCCCTTGCCCCTCCTCATC 60.694 63.158 0.00 0.00 0.00 2.92
433 434 1.695597 CTCCCTTGCCCCTCCTCAT 60.696 63.158 0.00 0.00 0.00 2.90
434 435 2.285668 CTCCCTTGCCCCTCCTCA 60.286 66.667 0.00 0.00 0.00 3.86
435 436 2.041265 TCTCCCTTGCCCCTCCTC 59.959 66.667 0.00 0.00 0.00 3.71
436 437 2.041928 CTCTCCCTTGCCCCTCCT 59.958 66.667 0.00 0.00 0.00 3.69
437 438 3.093172 CCTCTCCCTTGCCCCTCC 61.093 72.222 0.00 0.00 0.00 4.30
438 439 3.093172 CCCTCTCCCTTGCCCCTC 61.093 72.222 0.00 0.00 0.00 4.30
439 440 2.514522 ATTCCCTCTCCCTTGCCCCT 62.515 60.000 0.00 0.00 0.00 4.79
440 441 1.584717 AATTCCCTCTCCCTTGCCCC 61.585 60.000 0.00 0.00 0.00 5.80
441 442 0.396278 CAATTCCCTCTCCCTTGCCC 60.396 60.000 0.00 0.00 0.00 5.36
442 443 0.332972 ACAATTCCCTCTCCCTTGCC 59.667 55.000 0.00 0.00 0.00 4.52
443 444 1.756430 GACAATTCCCTCTCCCTTGC 58.244 55.000 0.00 0.00 0.00 4.01
444 445 1.407437 CCGACAATTCCCTCTCCCTTG 60.407 57.143 0.00 0.00 0.00 3.61
445 446 0.912486 CCGACAATTCCCTCTCCCTT 59.088 55.000 0.00 0.00 0.00 3.95
446 447 0.252742 ACCGACAATTCCCTCTCCCT 60.253 55.000 0.00 0.00 0.00 4.20
447 448 0.618981 AACCGACAATTCCCTCTCCC 59.381 55.000 0.00 0.00 0.00 4.30
448 449 2.158943 CCTAACCGACAATTCCCTCTCC 60.159 54.545 0.00 0.00 0.00 3.71
449 450 2.500504 ACCTAACCGACAATTCCCTCTC 59.499 50.000 0.00 0.00 0.00 3.20
450 451 2.547990 ACCTAACCGACAATTCCCTCT 58.452 47.619 0.00 0.00 0.00 3.69
451 452 3.345508 AACCTAACCGACAATTCCCTC 57.654 47.619 0.00 0.00 0.00 4.30
452 453 3.842436 AGTAACCTAACCGACAATTCCCT 59.158 43.478 0.00 0.00 0.00 4.20
453 454 4.212143 AGTAACCTAACCGACAATTCCC 57.788 45.455 0.00 0.00 0.00 3.97
454 455 6.199719 CGAATAGTAACCTAACCGACAATTCC 59.800 42.308 0.00 0.00 0.00 3.01
455 456 6.753744 ACGAATAGTAACCTAACCGACAATTC 59.246 38.462 0.00 0.00 0.00 2.17
456 457 6.532657 CACGAATAGTAACCTAACCGACAATT 59.467 38.462 0.00 0.00 0.00 2.32
457 458 6.038356 CACGAATAGTAACCTAACCGACAAT 58.962 40.000 0.00 0.00 0.00 2.71
458 459 5.048083 ACACGAATAGTAACCTAACCGACAA 60.048 40.000 0.00 0.00 0.00 3.18
459 460 4.458989 ACACGAATAGTAACCTAACCGACA 59.541 41.667 0.00 0.00 0.00 4.35
460 461 4.986622 ACACGAATAGTAACCTAACCGAC 58.013 43.478 0.00 0.00 0.00 4.79
461 462 4.201812 CGACACGAATAGTAACCTAACCGA 60.202 45.833 0.00 0.00 0.00 4.69
462 463 4.031028 CGACACGAATAGTAACCTAACCG 58.969 47.826 0.00 0.00 0.00 4.44
463 464 3.793492 GCGACACGAATAGTAACCTAACC 59.207 47.826 0.00 0.00 0.00 2.85
464 465 4.666237 AGCGACACGAATAGTAACCTAAC 58.334 43.478 0.00 0.00 0.00 2.34
465 466 4.494690 CGAGCGACACGAATAGTAACCTAA 60.495 45.833 0.00 0.00 0.00 2.69
466 467 3.001634 CGAGCGACACGAATAGTAACCTA 59.998 47.826 0.00 0.00 0.00 3.08
467 468 2.223203 CGAGCGACACGAATAGTAACCT 60.223 50.000 0.00 0.00 0.00 3.50
468 469 2.107178 CGAGCGACACGAATAGTAACC 58.893 52.381 0.00 0.00 0.00 2.85
469 470 3.027710 CTCGAGCGACACGAATAGTAAC 58.972 50.000 0.00 0.00 39.23 2.50
470 471 2.538333 GCTCGAGCGACACGAATAGTAA 60.538 50.000 23.61 0.00 39.23 2.24
471 472 1.004185 GCTCGAGCGACACGAATAGTA 60.004 52.381 23.61 0.00 39.23 1.82
472 473 0.248134 GCTCGAGCGACACGAATAGT 60.248 55.000 23.61 0.00 39.23 2.12
473 474 2.485933 GCTCGAGCGACACGAATAG 58.514 57.895 23.61 0.00 39.23 1.73
474 475 4.684265 GCTCGAGCGACACGAATA 57.316 55.556 23.61 0.00 39.23 1.75
503 504 0.966920 TGAGACGAGGACCCTTTGTC 59.033 55.000 11.94 11.94 43.67 3.18
504 505 1.344763 CTTGAGACGAGGACCCTTTGT 59.655 52.381 0.00 0.00 0.00 2.83
505 506 1.344763 ACTTGAGACGAGGACCCTTTG 59.655 52.381 0.00 0.00 0.00 2.77
506 507 1.718280 ACTTGAGACGAGGACCCTTT 58.282 50.000 0.00 0.00 0.00 3.11
507 508 2.599408 TACTTGAGACGAGGACCCTT 57.401 50.000 0.00 0.00 0.00 3.95
508 509 2.448453 CTTACTTGAGACGAGGACCCT 58.552 52.381 0.00 0.00 0.00 4.34
509 510 1.135053 GCTTACTTGAGACGAGGACCC 60.135 57.143 0.00 0.00 0.00 4.46
510 511 1.544691 TGCTTACTTGAGACGAGGACC 59.455 52.381 0.00 0.00 0.00 4.46
511 512 3.299340 TTGCTTACTTGAGACGAGGAC 57.701 47.619 0.00 0.00 0.00 3.85
512 513 4.537135 ATTTGCTTACTTGAGACGAGGA 57.463 40.909 0.00 0.00 0.00 3.71
513 514 5.613358 AAATTTGCTTACTTGAGACGAGG 57.387 39.130 0.00 0.00 0.00 4.63
514 515 8.230486 ACATAAAATTTGCTTACTTGAGACGAG 58.770 33.333 0.00 0.00 0.00 4.18
580 581 0.753262 CCAAGGAGGTAGATCCCACG 59.247 60.000 0.00 0.00 40.53 4.94
584 585 1.475930 GCAAGCCAAGGAGGTAGATCC 60.476 57.143 0.00 0.00 40.61 3.36
601 602 7.603024 GCTTAACTAGGAGAAAAGAGTTAGCAA 59.397 37.037 0.00 0.00 36.16 3.91
608 609 7.412853 AGGTAGCTTAACTAGGAGAAAAGAG 57.587 40.000 0.00 0.00 0.00 2.85
634 635 2.912744 CAAGTGCACGCGTTTTGC 59.087 55.556 10.22 11.79 40.63 3.68
635 636 1.139226 AAGCAAGTGCACGCGTTTTG 61.139 50.000 10.22 13.22 45.16 2.44
641 642 1.154654 GTACGAAGCAAGTGCACGC 60.155 57.895 12.01 10.06 45.16 5.34
648 649 5.109210 TGGAGACATTATGTACGAAGCAAG 58.891 41.667 0.00 0.00 33.40 4.01
678 679 1.172812 AGGCCGACTGGTGAAAAAGC 61.173 55.000 0.00 0.00 37.67 3.51
691 692 4.881440 GCCATGCATCCAGGCCGA 62.881 66.667 14.19 0.00 42.58 5.54
739 740 7.385205 TGTTATTTTAGTCTTGCAGAGAGTGAC 59.615 37.037 13.33 5.62 38.51 3.67
791 870 8.973835 ACGCTCTACTAATCATTAAGATAAGC 57.026 34.615 0.00 0.00 35.39 3.09
836 996 6.548171 GCACACAAACGTATGGTTATATGTT 58.452 36.000 0.00 0.00 46.08 2.71
1022 1192 1.349026 CAAGGAGGCTTGTCAGGAGAA 59.651 52.381 0.00 0.00 0.00 2.87
1059 1229 2.407361 CGTACCTTCTACGTTGCAGTTG 59.593 50.000 0.00 0.00 36.31 3.16
1061 1231 2.342910 CGTACCTTCTACGTTGCAGT 57.657 50.000 0.00 0.00 36.31 4.40
1173 1473 1.228956 TCCCATGCTTGCCTTTGCT 60.229 52.632 0.00 0.00 38.71 3.91
1338 1641 3.641434 ACAAGCATTCAGAGGCATACT 57.359 42.857 0.00 0.00 34.36 2.12
1339 1642 4.439289 GGAAACAAGCATTCAGAGGCATAC 60.439 45.833 0.00 0.00 34.36 2.39
1354 1669 1.005294 GCATGCACAGCGGAAACAAG 61.005 55.000 14.21 0.00 0.00 3.16
1448 1764 4.999950 AGGTTGCAGTTCTTCTTACAGATG 59.000 41.667 0.00 0.00 0.00 2.90
1611 1927 6.894654 AGAAGGTTGTCATAGAGATGAAGAGA 59.105 38.462 0.00 0.00 43.77 3.10
1781 2104 6.296026 TGTACTTAGAAGATTGCACCTTGTT 58.704 36.000 5.36 0.00 0.00 2.83
1864 2188 0.249114 GAGAATCTCCGGCGGAACTC 60.249 60.000 30.59 26.78 0.00 3.01
2294 2726 4.698575 GGGGAGAAGAGTTTATGCTGTAG 58.301 47.826 0.00 0.00 0.00 2.74
2297 2729 2.555199 CGGGGAGAAGAGTTTATGCTG 58.445 52.381 0.00 0.00 0.00 4.41
2384 2820 9.775854 ACATTCATAGTATGAGAAGATCCTTTG 57.224 33.333 12.50 0.00 40.94 2.77
2387 2823 8.489676 ACACATTCATAGTATGAGAAGATCCT 57.510 34.615 12.50 0.00 40.94 3.24
2543 2983 3.016736 ACATGGAAAGCCTAAACCATCG 58.983 45.455 0.00 0.00 40.55 3.84
2653 3093 3.475566 AGCTTGCAGTCTTGAGTGTAA 57.524 42.857 8.30 8.30 0.00 2.41
2695 3135 4.799564 TTTCAGTTTGTGCTTCCAGTTT 57.200 36.364 0.00 0.00 0.00 2.66
2867 3307 9.878667 TTCATATTCATTTCAAATGTTCATGCT 57.121 25.926 9.98 0.00 0.00 3.79
2943 3387 2.515523 GGCCGCATGCATCACTCT 60.516 61.111 19.57 0.00 43.89 3.24
3010 3454 6.257630 GCTTTTGCTCTTTGTGAACCATTTTA 59.742 34.615 0.00 0.00 43.35 1.52
3015 3459 3.163630 GCTTTTGCTCTTTGTGAACCA 57.836 42.857 0.00 0.00 43.35 3.67
3119 3564 4.438346 CGGGCTATCTTCAACCGG 57.562 61.111 0.00 0.00 40.79 5.28
3134 3579 2.642254 TTGGGAGACGGTAGCACGG 61.642 63.158 0.00 0.00 38.39 4.94
3135 3580 1.445582 GTTGGGAGACGGTAGCACG 60.446 63.158 0.00 0.00 40.31 5.34


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.