Multiple sequence alignment - TraesCS2D01G011000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2D01G011000 chr2D 100.000 3809 0 0 1 3809 5419318 5423126 0.000000e+00 7035.0
1 TraesCS2D01G011000 chr2D 96.774 775 23 2 1 775 2078376 2079148 0.000000e+00 1291.0
2 TraesCS2D01G011000 chr2D 85.279 394 41 6 1594 1980 606136913 606136530 1.280000e-104 390.0
3 TraesCS2D01G011000 chr2D 100.000 30 0 0 3778 3807 602239383 602239354 5.320000e-04 56.5
4 TraesCS2D01G011000 chr2B 92.448 1152 82 5 1977 3126 6026973 6025825 0.000000e+00 1640.0
5 TraesCS2D01G011000 chr2B 92.087 1150 79 4 1977 3126 6124570 6123433 0.000000e+00 1609.0
6 TraesCS2D01G011000 chr2B 92.029 690 51 4 2437 3126 5782482 5783167 0.000000e+00 966.0
7 TraesCS2D01G011000 chr2B 89.718 496 42 6 1061 1554 6027833 6027345 3.230000e-175 625.0
8 TraesCS2D01G011000 chr2B 88.548 489 45 5 1061 1548 6125345 6124867 1.970000e-162 582.0
9 TraesCS2D01G011000 chr2B 88.430 484 40 8 3325 3792 6025527 6025044 1.540000e-158 569.0
10 TraesCS2D01G011000 chr2B 88.723 470 37 8 3328 3782 6123134 6122666 9.240000e-156 560.0
11 TraesCS2D01G011000 chr2B 86.327 490 49 10 3320 3792 5783449 5783937 5.640000e-143 518.0
12 TraesCS2D01G011000 chr2B 91.544 272 20 3 1978 2246 5782219 5782490 4.650000e-99 372.0
13 TraesCS2D01G011000 chr2B 83.150 273 23 10 784 1055 6125659 6125409 1.060000e-55 228.0
14 TraesCS2D01G011000 chr2B 86.321 212 21 5 3125 3336 5783218 5783421 1.380000e-54 224.0
15 TraesCS2D01G011000 chr2B 92.079 101 6 2 785 884 6028120 6028021 1.430000e-29 141.0
16 TraesCS2D01G011000 chr2B 89.691 97 10 0 786 882 6108951 6108855 1.440000e-24 124.0
17 TraesCS2D01G011000 chr2B 97.826 46 1 0 922 967 6028005 6027960 3.150000e-11 80.5
18 TraesCS2D01G011000 chr5D 98.067 776 15 0 1 776 225747461 225746686 0.000000e+00 1351.0
19 TraesCS2D01G011000 chr5D 100.000 30 0 0 3778 3807 51699993 51699964 5.320000e-04 56.5
20 TraesCS2D01G011000 chr6D 96.787 778 24 1 1 777 224417383 224416606 0.000000e+00 1297.0
21 TraesCS2D01G011000 chr7D 96.787 778 21 1 1 778 371842102 371842875 0.000000e+00 1295.0
22 TraesCS2D01G011000 chr7D 100.000 32 0 0 3778 3809 246406888 246406857 4.110000e-05 60.2
23 TraesCS2D01G011000 chr1A 96.645 775 26 0 1 775 30649495 30648721 0.000000e+00 1288.0
24 TraesCS2D01G011000 chr1A 95.513 780 32 3 1 779 369582452 369581675 0.000000e+00 1243.0
25 TraesCS2D01G011000 chr1A 85.492 386 43 8 1592 1975 592995249 592995623 1.280000e-104 390.0
26 TraesCS2D01G011000 chr1A 100.000 28 0 0 3330 3357 336243605 336243632 7.000000e-03 52.8
27 TraesCS2D01G011000 chr7B 96.005 776 31 0 1 776 552843156 552843931 0.000000e+00 1262.0
28 TraesCS2D01G011000 chr7B 82.952 393 48 12 1594 1975 744931612 744931996 1.700000e-88 337.0
29 TraesCS2D01G011000 chr7B 82.741 394 49 14 1594 1975 747001880 747002266 2.190000e-87 333.0
30 TraesCS2D01G011000 chr7B 100.000 32 0 0 3778 3809 733768999 733769030 4.110000e-05 60.2
31 TraesCS2D01G011000 chr7B 100.000 30 0 0 3778 3807 683109218 683109247 5.320000e-04 56.5
32 TraesCS2D01G011000 chr6A 95.619 776 34 0 1 776 277537057 277536282 0.000000e+00 1245.0
33 TraesCS2D01G011000 chr1D 95.256 780 37 0 1 780 361397638 361398417 0.000000e+00 1236.0
34 TraesCS2D01G011000 chr1D 100.000 30 0 0 3778 3807 363733157 363733128 5.320000e-04 56.5
35 TraesCS2D01G011000 chr7A 85.751 393 39 10 1594 1979 694514795 694514413 2.130000e-107 399.0
36 TraesCS2D01G011000 chr7A 83.376 391 49 12 1594 1978 609262266 609262646 7.830000e-92 348.0
37 TraesCS2D01G011000 chr7A 85.672 335 40 3 1637 1971 2747794 2747468 2.820000e-91 346.0
38 TraesCS2D01G011000 chrUn 85.063 395 41 11 1594 1976 71298054 71298442 1.660000e-103 387.0
39 TraesCS2D01G011000 chr2A 83.831 402 42 11 1592 1975 24210467 24210071 1.010000e-95 361.0
40 TraesCS2D01G011000 chr2A 100.000 32 0 0 3778 3809 42184928 42184897 4.110000e-05 60.2
41 TraesCS2D01G011000 chr4A 100.000 32 0 0 3778 3809 734884725 734884694 4.110000e-05 60.2
42 TraesCS2D01G011000 chr3D 100.000 30 0 0 3778 3807 42769475 42769504 5.320000e-04 56.5
43 TraesCS2D01G011000 chr1B 100.000 30 0 0 3778 3807 575418334 575418363 5.320000e-04 56.5
44 TraesCS2D01G011000 chr1B 100.000 29 0 0 3778 3806 667730985 667731013 2.000000e-03 54.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2D01G011000 chr2D 5419318 5423126 3808 False 7035.00 7035 100.00000 1 3809 1 chr2D.!!$F2 3808
1 TraesCS2D01G011000 chr2D 2078376 2079148 772 False 1291.00 1291 96.77400 1 775 1 chr2D.!!$F1 774
2 TraesCS2D01G011000 chr2B 6122666 6125659 2993 True 744.75 1609 88.12700 784 3782 4 chr2B.!!$R3 2998
3 TraesCS2D01G011000 chr2B 6025044 6028120 3076 True 611.10 1640 92.10020 785 3792 5 chr2B.!!$R2 3007
4 TraesCS2D01G011000 chr2B 5782219 5783937 1718 False 520.00 966 89.05525 1978 3792 4 chr2B.!!$F1 1814
5 TraesCS2D01G011000 chr5D 225746686 225747461 775 True 1351.00 1351 98.06700 1 776 1 chr5D.!!$R2 775
6 TraesCS2D01G011000 chr6D 224416606 224417383 777 True 1297.00 1297 96.78700 1 777 1 chr6D.!!$R1 776
7 TraesCS2D01G011000 chr7D 371842102 371842875 773 False 1295.00 1295 96.78700 1 778 1 chr7D.!!$F1 777
8 TraesCS2D01G011000 chr1A 30648721 30649495 774 True 1288.00 1288 96.64500 1 775 1 chr1A.!!$R1 774
9 TraesCS2D01G011000 chr1A 369581675 369582452 777 True 1243.00 1243 95.51300 1 779 1 chr1A.!!$R2 778
10 TraesCS2D01G011000 chr7B 552843156 552843931 775 False 1262.00 1262 96.00500 1 776 1 chr7B.!!$F1 775
11 TraesCS2D01G011000 chr6A 277536282 277537057 775 True 1245.00 1245 95.61900 1 776 1 chr6A.!!$R1 775
12 TraesCS2D01G011000 chr1D 361397638 361398417 779 False 1236.00 1236 95.25600 1 780 1 chr1D.!!$F1 779

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
563 565 0.469331 ATTGGAGGATACGGCGAGGA 60.469 55.0 16.62 0.00 46.39 3.71 F
1278 1343 0.249868 TCGAGAAACTGCACCAGGTG 60.250 55.0 16.16 16.16 35.51 4.00 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1599 2011 0.031585 GCACCGGGAGTTGAAAAACC 59.968 55.0 6.32 0.0 0.0 3.27 R
3242 3713 0.524414 ATACCGGGCAAAAGCGAAAC 59.476 50.0 6.32 0.0 0.0 2.78 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
347 349 4.160252 GCAACTGGTTACATGGGATTGATT 59.840 41.667 0.00 0.00 0.00 2.57
472 474 6.551227 TGATGCAGGTTATCTACAGATGTACT 59.449 38.462 1.88 0.00 36.05 2.73
563 565 0.469331 ATTGGAGGATACGGCGAGGA 60.469 55.000 16.62 0.00 46.39 3.71
647 650 8.853126 AGGCGTTATACATACTCTACATGTTTA 58.147 33.333 2.30 0.00 37.74 2.01
813 816 8.485392 TGACTTGTTCATATCTCACATTGGATA 58.515 33.333 0.00 0.00 0.00 2.59
884 887 4.647291 AATCAACGTCACTTTCTTAGCG 57.353 40.909 0.00 0.00 0.00 4.26
885 888 3.088194 TCAACGTCACTTTCTTAGCGT 57.912 42.857 0.00 0.00 0.00 5.07
887 890 2.503920 ACGTCACTTTCTTAGCGTGT 57.496 45.000 0.00 0.00 0.00 4.49
888 891 3.631145 ACGTCACTTTCTTAGCGTGTA 57.369 42.857 0.00 0.00 0.00 2.90
889 892 3.562505 ACGTCACTTTCTTAGCGTGTAG 58.437 45.455 0.00 0.00 0.00 2.74
906 909 6.344073 CGTGTAGCACAAAATTAAACTTCG 57.656 37.500 0.14 0.00 33.40 3.79
907 910 6.130723 CGTGTAGCACAAAATTAAACTTCGA 58.869 36.000 0.14 0.00 33.40 3.71
908 911 6.629649 CGTGTAGCACAAAATTAAACTTCGAA 59.370 34.615 0.00 0.00 33.40 3.71
909 912 7.164498 CGTGTAGCACAAAATTAAACTTCGAAA 59.836 33.333 0.00 0.00 33.40 3.46
910 913 8.469125 GTGTAGCACAAAATTAAACTTCGAAAG 58.531 33.333 0.00 0.00 34.08 2.62
911 914 8.399425 TGTAGCACAAAATTAAACTTCGAAAGA 58.601 29.630 0.00 0.00 39.20 2.52
955 958 1.062587 CGTTGATGCCGACCTTTGATC 59.937 52.381 0.00 0.00 0.00 2.92
967 970 4.433615 GACCTTTGATCGATCAGTAAGCA 58.566 43.478 25.95 9.51 38.19 3.91
969 972 4.081420 ACCTTTGATCGATCAGTAAGCACT 60.081 41.667 25.95 11.12 38.19 4.40
970 973 4.872691 CCTTTGATCGATCAGTAAGCACTT 59.127 41.667 25.95 0.00 38.19 3.16
971 974 6.042777 CCTTTGATCGATCAGTAAGCACTTA 58.957 40.000 25.95 6.60 38.19 2.24
972 975 6.535150 CCTTTGATCGATCAGTAAGCACTTAA 59.465 38.462 25.95 13.47 38.19 1.85
987 991 4.080863 AGCACTTAATTACCACCTCCTCTG 60.081 45.833 0.00 0.00 0.00 3.35
995 999 3.011517 ACCTCCTCTGCGGCCATT 61.012 61.111 2.24 0.00 0.00 3.16
1014 1018 5.167121 CCATTCTCTGCATATAAGGAGACG 58.833 45.833 0.88 0.00 35.02 4.18
1022 1026 3.318275 GCATATAAGGAGACGGTGTCAGA 59.682 47.826 7.63 0.00 34.60 3.27
1034 1038 0.321653 GTGTCAGATTCCCAAGCCGT 60.322 55.000 0.00 0.00 0.00 5.68
1037 1041 1.452108 CAGATTCCCAAGCCGTCCC 60.452 63.158 0.00 0.00 0.00 4.46
1040 1044 2.925162 GATTCCCAAGCCGTCCCTCG 62.925 65.000 0.00 0.00 39.52 4.63
1058 1062 3.790437 CCCTCGTGCATGCCTCCT 61.790 66.667 16.68 0.00 0.00 3.69
1086 1148 2.125350 GACGAAGCAGAGCCAGGG 60.125 66.667 0.00 0.00 0.00 4.45
1103 1165 2.224159 GGAGGAAGTGGGAGGTGCA 61.224 63.158 0.00 0.00 0.00 4.57
1104 1166 1.003233 GAGGAAGTGGGAGGTGCAC 60.003 63.158 8.80 8.80 0.00 4.57
1105 1167 2.358737 GGAAGTGGGAGGTGCACG 60.359 66.667 11.45 0.00 0.00 5.34
1144 1209 0.467804 GCCCTCATCTTCACTCCTCC 59.532 60.000 0.00 0.00 0.00 4.30
1145 1210 1.969240 GCCCTCATCTTCACTCCTCCT 60.969 57.143 0.00 0.00 0.00 3.69
1146 1211 2.038659 CCCTCATCTTCACTCCTCCTC 58.961 57.143 0.00 0.00 0.00 3.71
1196 1261 1.673329 GCCGGAGTGGAAGAAGAAGAC 60.673 57.143 5.05 0.00 42.00 3.01
1197 1262 1.618837 CCGGAGTGGAAGAAGAAGACA 59.381 52.381 0.00 0.00 42.00 3.41
1204 1269 3.003793 GTGGAAGAAGAAGACAAAGCCAC 59.996 47.826 0.00 0.00 36.82 5.01
1278 1343 0.249868 TCGAGAAACTGCACCAGGTG 60.250 55.000 16.16 16.16 35.51 4.00
1289 1354 2.261671 CCAGGTGGACGTTCTCCG 59.738 66.667 9.27 4.82 43.03 4.63
1293 1358 2.993264 GTGGACGTTCTCCGGGGA 60.993 66.667 0.00 0.00 43.03 4.81
1294 1359 2.993264 TGGACGTTCTCCGGGGAC 60.993 66.667 1.51 0.00 43.03 4.46
1322 1387 3.626924 GTGTCGTCCCTGGCACCT 61.627 66.667 0.00 0.00 0.00 4.00
1327 1392 4.729918 GTCCCTGGCACCTGGCTG 62.730 72.222 7.07 0.00 44.01 4.85
1359 1424 4.089239 TCCTTGTGGCGCCGCATA 62.089 61.111 40.60 28.35 36.27 3.14
1362 1427 1.889105 CTTGTGGCGCCGCATAGAT 60.889 57.895 40.60 0.00 36.27 1.98
1392 1457 2.283809 CATCTCCCCGACCCCTCT 59.716 66.667 0.00 0.00 0.00 3.69
1396 1461 4.772231 TCCCCGACCCCTCTTCCG 62.772 72.222 0.00 0.00 0.00 4.30
1399 1464 2.362632 CCGACCCCTCTTCCGTCT 60.363 66.667 0.00 0.00 0.00 4.18
1400 1465 2.711922 CCGACCCCTCTTCCGTCTG 61.712 68.421 0.00 0.00 0.00 3.51
1401 1466 2.711922 CGACCCCTCTTCCGTCTGG 61.712 68.421 0.00 0.00 0.00 3.86
1412 1477 4.717629 CGTCTGGCGCTTCCACGA 62.718 66.667 7.64 0.00 40.72 4.35
1413 1478 2.811317 GTCTGGCGCTTCCACGAG 60.811 66.667 7.64 0.00 40.72 4.18
1459 1524 4.767255 GTGGGAGCTGTGAGGCGG 62.767 72.222 0.00 0.00 37.29 6.13
1504 1569 2.323999 AGAGGCCATATCTCTCCTGG 57.676 55.000 5.01 0.00 36.99 4.45
1505 1570 1.507300 AGAGGCCATATCTCTCCTGGT 59.493 52.381 5.01 0.00 36.99 4.00
1518 1583 4.019501 TCTCTCCTGGTAGAGTCGTAAGTT 60.020 45.833 17.18 0.00 43.02 2.66
1547 1959 5.704053 TCTTCACTTGACTACACGAGACATA 59.296 40.000 0.00 0.00 29.70 2.29
1551 1963 5.744345 CACTTGACTACACGAGACATATTCC 59.256 44.000 0.00 0.00 29.70 3.01
1575 1987 9.621629 TCCTATGGAAAATTATCATTAACACGT 57.378 29.630 0.00 0.00 0.00 4.49
1576 1988 9.663904 CCTATGGAAAATTATCATTAACACGTG 57.336 33.333 15.48 15.48 0.00 4.49
1577 1989 9.663904 CTATGGAAAATTATCATTAACACGTGG 57.336 33.333 21.57 0.90 0.00 4.94
1578 1990 7.689446 TGGAAAATTATCATTAACACGTGGA 57.311 32.000 21.57 7.23 0.00 4.02
1579 1991 8.112016 TGGAAAATTATCATTAACACGTGGAA 57.888 30.769 21.57 13.86 0.00 3.53
1581 1993 9.019764 GGAAAATTATCATTAACACGTGGAATG 57.980 33.333 27.06 27.06 32.85 2.67
1582 1994 7.985634 AAATTATCATTAACACGTGGAATGC 57.014 32.000 27.69 0.00 31.86 3.56
1583 1995 6.942532 ATTATCATTAACACGTGGAATGCT 57.057 33.333 27.69 23.44 31.86 3.79
1584 1996 6.751514 TTATCATTAACACGTGGAATGCTT 57.248 33.333 27.69 21.89 31.86 3.91
1585 1997 7.851387 TTATCATTAACACGTGGAATGCTTA 57.149 32.000 27.69 21.21 31.86 3.09
1586 1998 6.942532 ATCATTAACACGTGGAATGCTTAT 57.057 33.333 27.69 18.77 31.86 1.73
1587 1999 9.549078 TTATCATTAACACGTGGAATGCTTATA 57.451 29.630 27.69 20.71 31.86 0.98
1588 2000 8.621532 ATCATTAACACGTGGAATGCTTATAT 57.378 30.769 27.69 18.28 31.86 0.86
1589 2001 8.083462 TCATTAACACGTGGAATGCTTATATC 57.917 34.615 27.69 0.00 31.86 1.63
1590 2002 6.854496 TTAACACGTGGAATGCTTATATCC 57.146 37.500 21.57 0.00 0.00 2.59
1591 2003 4.415881 ACACGTGGAATGCTTATATCCA 57.584 40.909 21.57 0.00 40.84 3.41
1592 2004 4.973168 ACACGTGGAATGCTTATATCCAT 58.027 39.130 21.57 0.00 44.55 3.41
1597 2009 6.981762 GTGGAATGCTTATATCCATGAGAG 57.018 41.667 0.00 0.00 44.55 3.20
1598 2010 6.471146 GTGGAATGCTTATATCCATGAGAGT 58.529 40.000 0.00 0.00 44.55 3.24
1599 2011 6.370994 GTGGAATGCTTATATCCATGAGAGTG 59.629 42.308 0.00 0.00 44.55 3.51
1600 2012 5.879223 GGAATGCTTATATCCATGAGAGTGG 59.121 44.000 0.00 0.00 40.76 4.00
1601 2013 6.445451 AATGCTTATATCCATGAGAGTGGT 57.555 37.500 0.00 0.00 40.27 4.16
1602 2014 5.894298 TGCTTATATCCATGAGAGTGGTT 57.106 39.130 0.00 0.00 40.27 3.67
1603 2015 6.252599 TGCTTATATCCATGAGAGTGGTTT 57.747 37.500 0.00 0.00 40.27 3.27
1604 2016 6.662755 TGCTTATATCCATGAGAGTGGTTTT 58.337 36.000 0.00 0.00 40.27 2.43
1605 2017 7.118723 TGCTTATATCCATGAGAGTGGTTTTT 58.881 34.615 0.00 0.00 40.27 1.94
1606 2018 7.283127 TGCTTATATCCATGAGAGTGGTTTTTC 59.717 37.037 0.00 0.00 40.27 2.29
1607 2019 7.283127 GCTTATATCCATGAGAGTGGTTTTTCA 59.717 37.037 0.00 0.00 40.27 2.69
1608 2020 9.177608 CTTATATCCATGAGAGTGGTTTTTCAA 57.822 33.333 0.00 0.00 40.27 2.69
1609 2021 5.712152 ATCCATGAGAGTGGTTTTTCAAC 57.288 39.130 0.00 0.00 40.27 3.18
1610 2022 4.792068 TCCATGAGAGTGGTTTTTCAACT 58.208 39.130 0.00 0.00 40.27 3.16
1611 2023 4.821805 TCCATGAGAGTGGTTTTTCAACTC 59.178 41.667 0.00 0.00 40.27 3.01
1612 2024 4.022849 CCATGAGAGTGGTTTTTCAACTCC 60.023 45.833 0.00 0.00 34.46 3.85
1613 2025 3.551846 TGAGAGTGGTTTTTCAACTCCC 58.448 45.455 0.00 0.00 32.90 4.30
1614 2026 2.548480 GAGAGTGGTTTTTCAACTCCCG 59.452 50.000 0.00 0.00 32.90 5.14
1615 2027 1.607148 GAGTGGTTTTTCAACTCCCGG 59.393 52.381 0.00 0.00 32.90 5.73
1616 2028 1.064240 AGTGGTTTTTCAACTCCCGGT 60.064 47.619 0.00 0.00 32.90 5.28
1617 2029 1.066454 GTGGTTTTTCAACTCCCGGTG 59.934 52.381 0.00 0.00 32.90 4.94
1618 2030 0.031585 GGTTTTTCAACTCCCGGTGC 59.968 55.000 0.00 0.00 32.90 5.01
1619 2031 0.031585 GTTTTTCAACTCCCGGTGCC 59.968 55.000 0.00 0.00 0.00 5.01
1620 2032 0.106419 TTTTTCAACTCCCGGTGCCT 60.106 50.000 0.00 0.00 0.00 4.75
1621 2033 0.766131 TTTTCAACTCCCGGTGCCTA 59.234 50.000 0.00 0.00 0.00 3.93
1622 2034 0.323629 TTTCAACTCCCGGTGCCTAG 59.676 55.000 0.00 0.00 0.00 3.02
1623 2035 1.550130 TTCAACTCCCGGTGCCTAGG 61.550 60.000 3.67 3.67 0.00 3.02
1624 2036 3.400054 AACTCCCGGTGCCTAGGC 61.400 66.667 27.71 27.71 42.35 3.93
1635 2047 3.466714 GCCTAGGCACCCTCTCTAT 57.533 57.895 29.33 0.00 41.49 1.98
1636 2048 2.606751 GCCTAGGCACCCTCTCTATA 57.393 55.000 29.33 0.00 41.49 1.31
1637 2049 2.890814 GCCTAGGCACCCTCTCTATAA 58.109 52.381 29.33 0.00 41.49 0.98
1638 2050 3.240302 GCCTAGGCACCCTCTCTATAAA 58.760 50.000 29.33 0.00 41.49 1.40
1639 2051 3.007074 GCCTAGGCACCCTCTCTATAAAC 59.993 52.174 29.33 0.00 41.49 2.01
1640 2052 4.223953 CCTAGGCACCCTCTCTATAAACA 58.776 47.826 0.00 0.00 34.61 2.83
1641 2053 4.282195 CCTAGGCACCCTCTCTATAAACAG 59.718 50.000 0.00 0.00 34.61 3.16
1642 2054 3.725634 AGGCACCCTCTCTATAAACAGT 58.274 45.455 0.00 0.00 0.00 3.55
1643 2055 4.880164 AGGCACCCTCTCTATAAACAGTA 58.120 43.478 0.00 0.00 0.00 2.74
1644 2056 5.278061 AGGCACCCTCTCTATAAACAGTAA 58.722 41.667 0.00 0.00 0.00 2.24
1645 2057 5.724854 AGGCACCCTCTCTATAAACAGTAAA 59.275 40.000 0.00 0.00 0.00 2.01
1646 2058 6.214819 AGGCACCCTCTCTATAAACAGTAAAA 59.785 38.462 0.00 0.00 0.00 1.52
1647 2059 6.882678 GGCACCCTCTCTATAAACAGTAAAAA 59.117 38.462 0.00 0.00 0.00 1.94
1682 2094 9.857957 AAAAATTGAAACTTTGCAACATCAAAT 57.142 22.222 15.19 7.88 35.64 2.32
1686 2098 8.883954 TTGAAACTTTGCAACATCAAATATGA 57.116 26.923 0.00 0.00 40.57 2.15
1688 2100 9.142515 TGAAACTTTGCAACATCAAATATGATC 57.857 29.630 0.00 0.00 44.53 2.92
1689 2101 9.142515 GAAACTTTGCAACATCAAATATGATCA 57.857 29.630 0.00 0.00 44.53 2.92
1690 2102 9.491675 AAACTTTGCAACATCAAATATGATCAA 57.508 25.926 0.00 0.00 44.53 2.57
1691 2103 9.491675 AACTTTGCAACATCAAATATGATCAAA 57.508 25.926 0.00 0.00 44.53 2.69
1692 2104 8.928733 ACTTTGCAACATCAAATATGATCAAAC 58.071 29.630 0.00 0.00 44.53 2.93
1693 2105 9.146984 CTTTGCAACATCAAATATGATCAAACT 57.853 29.630 0.00 0.00 44.53 2.66
1694 2106 9.491675 TTTGCAACATCAAATATGATCAAACTT 57.508 25.926 0.00 0.00 44.53 2.66
1695 2107 9.491675 TTGCAACATCAAATATGATCAAACTTT 57.508 25.926 0.00 0.00 44.53 2.66
1696 2108 8.927721 TGCAACATCAAATATGATCAAACTTTG 58.072 29.630 16.14 16.14 44.53 2.77
1697 2109 8.928733 GCAACATCAAATATGATCAAACTTTGT 58.071 29.630 19.20 8.61 44.53 2.83
1708 2120 7.517614 TGATCAAACTTTGTAGGTTATTGCA 57.482 32.000 0.00 0.00 27.75 4.08
1709 2121 7.946207 TGATCAAACTTTGTAGGTTATTGCAA 58.054 30.769 0.00 0.00 27.75 4.08
1710 2122 8.081633 TGATCAAACTTTGTAGGTTATTGCAAG 58.918 33.333 4.94 0.00 27.75 4.01
1711 2123 7.341445 TCAAACTTTGTAGGTTATTGCAAGT 57.659 32.000 4.94 0.00 27.75 3.16
1712 2124 7.777095 TCAAACTTTGTAGGTTATTGCAAGTT 58.223 30.769 4.94 0.00 27.75 2.66
1713 2125 8.254508 TCAAACTTTGTAGGTTATTGCAAGTTT 58.745 29.630 4.94 2.08 27.75 2.66
1714 2126 8.878769 CAAACTTTGTAGGTTATTGCAAGTTTT 58.121 29.630 4.94 0.00 27.75 2.43
1715 2127 8.642908 AACTTTGTAGGTTATTGCAAGTTTTC 57.357 30.769 4.94 0.00 0.00 2.29
1716 2128 7.777095 ACTTTGTAGGTTATTGCAAGTTTTCA 58.223 30.769 4.94 0.00 0.00 2.69
1717 2129 8.421002 ACTTTGTAGGTTATTGCAAGTTTTCAT 58.579 29.630 4.94 0.00 0.00 2.57
1718 2130 8.586570 TTTGTAGGTTATTGCAAGTTTTCATG 57.413 30.769 4.94 0.00 0.00 3.07
1719 2131 6.155827 TGTAGGTTATTGCAAGTTTTCATGC 58.844 36.000 4.94 0.00 43.69 4.06
1720 2132 4.568956 AGGTTATTGCAAGTTTTCATGCC 58.431 39.130 4.94 0.00 42.89 4.40
1721 2133 4.040217 AGGTTATTGCAAGTTTTCATGCCA 59.960 37.500 4.94 0.00 42.89 4.92
1722 2134 4.754114 GGTTATTGCAAGTTTTCATGCCAA 59.246 37.500 4.94 0.00 42.89 4.52
1723 2135 5.238214 GGTTATTGCAAGTTTTCATGCCAAA 59.762 36.000 4.94 0.00 42.89 3.28
1724 2136 6.238593 GGTTATTGCAAGTTTTCATGCCAAAA 60.239 34.615 4.94 0.00 42.89 2.44
1725 2137 5.831702 ATTGCAAGTTTTCATGCCAAAAA 57.168 30.435 4.94 0.00 42.89 1.94
1751 2163 6.942532 AAAACATTCAAAGAGCTCTACACA 57.057 33.333 18.59 2.12 0.00 3.72
1752 2164 5.931441 AACATTCAAAGAGCTCTACACAC 57.069 39.130 18.59 0.00 0.00 3.82
1753 2165 4.960938 ACATTCAAAGAGCTCTACACACA 58.039 39.130 18.59 0.00 0.00 3.72
1754 2166 5.368145 ACATTCAAAGAGCTCTACACACAA 58.632 37.500 18.59 4.89 0.00 3.33
1755 2167 5.822519 ACATTCAAAGAGCTCTACACACAAA 59.177 36.000 18.59 5.46 0.00 2.83
1756 2168 6.318648 ACATTCAAAGAGCTCTACACACAAAA 59.681 34.615 18.59 3.91 0.00 2.44
1757 2169 6.751514 TTCAAAGAGCTCTACACACAAAAA 57.248 33.333 18.59 0.00 0.00 1.94
1779 2191 8.552083 AAAAAGATTTCAGTGCTTGAAGTTTT 57.448 26.923 0.00 8.70 46.01 2.43
1780 2192 7.529880 AAAGATTTCAGTGCTTGAAGTTTTG 57.470 32.000 0.00 0.00 46.01 2.44
1781 2193 6.455360 AGATTTCAGTGCTTGAAGTTTTGA 57.545 33.333 0.00 0.00 46.01 2.69
1782 2194 6.501781 AGATTTCAGTGCTTGAAGTTTTGAG 58.498 36.000 0.00 0.00 46.01 3.02
1783 2195 3.698029 TCAGTGCTTGAAGTTTTGAGC 57.302 42.857 0.00 0.00 31.34 4.26
1784 2196 3.016031 TCAGTGCTTGAAGTTTTGAGCA 58.984 40.909 0.00 5.09 42.36 4.26
1788 2200 4.454728 TGCTTGAAGTTTTGAGCACTTT 57.545 36.364 0.00 0.00 39.97 2.66
1789 2201 4.819769 TGCTTGAAGTTTTGAGCACTTTT 58.180 34.783 0.00 0.00 39.97 2.27
1790 2202 5.960113 TGCTTGAAGTTTTGAGCACTTTTA 58.040 33.333 0.00 0.00 39.97 1.52
1791 2203 6.035843 TGCTTGAAGTTTTGAGCACTTTTAG 58.964 36.000 0.00 0.00 39.97 1.85
1792 2204 5.051441 GCTTGAAGTTTTGAGCACTTTTAGC 60.051 40.000 0.00 0.00 34.49 3.09
1793 2205 5.574891 TGAAGTTTTGAGCACTTTTAGCA 57.425 34.783 0.00 0.00 34.49 3.49
1794 2206 5.339990 TGAAGTTTTGAGCACTTTTAGCAC 58.660 37.500 0.00 0.00 34.49 4.40
1795 2207 5.125417 TGAAGTTTTGAGCACTTTTAGCACT 59.875 36.000 0.00 0.00 34.49 4.40
1796 2208 4.925068 AGTTTTGAGCACTTTTAGCACTG 58.075 39.130 0.00 0.00 0.00 3.66
1797 2209 4.640201 AGTTTTGAGCACTTTTAGCACTGA 59.360 37.500 0.00 0.00 0.00 3.41
1798 2210 5.125417 AGTTTTGAGCACTTTTAGCACTGAA 59.875 36.000 0.00 0.00 0.00 3.02
1799 2211 5.574891 TTTGAGCACTTTTAGCACTGAAA 57.425 34.783 0.00 0.00 0.00 2.69
1800 2212 5.772825 TTGAGCACTTTTAGCACTGAAAT 57.227 34.783 0.00 0.00 0.00 2.17
1801 2213 5.362556 TGAGCACTTTTAGCACTGAAATC 57.637 39.130 0.00 0.00 0.00 2.17
1802 2214 5.065914 TGAGCACTTTTAGCACTGAAATCT 58.934 37.500 0.00 0.00 0.00 2.40
1803 2215 5.049198 TGAGCACTTTTAGCACTGAAATCTG 60.049 40.000 0.00 0.00 0.00 2.90
1804 2216 5.065914 AGCACTTTTAGCACTGAAATCTGA 58.934 37.500 0.00 0.00 0.00 3.27
1805 2217 5.532406 AGCACTTTTAGCACTGAAATCTGAA 59.468 36.000 0.00 0.00 0.00 3.02
1806 2218 6.039717 AGCACTTTTAGCACTGAAATCTGAAA 59.960 34.615 0.00 0.00 0.00 2.69
1807 2219 6.697019 GCACTTTTAGCACTGAAATCTGAAAA 59.303 34.615 0.00 0.00 0.00 2.29
1808 2220 7.383300 GCACTTTTAGCACTGAAATCTGAAAAT 59.617 33.333 0.00 0.00 0.00 1.82
1809 2221 8.909671 CACTTTTAGCACTGAAATCTGAAAATC 58.090 33.333 0.00 0.00 0.00 2.17
1810 2222 7.805071 ACTTTTAGCACTGAAATCTGAAAATCG 59.195 33.333 0.00 0.00 0.00 3.34
1811 2223 6.801539 TTAGCACTGAAATCTGAAAATCGT 57.198 33.333 0.00 0.00 0.00 3.73
1812 2224 5.695851 AGCACTGAAATCTGAAAATCGTT 57.304 34.783 0.00 0.00 0.00 3.85
1813 2225 6.076981 AGCACTGAAATCTGAAAATCGTTT 57.923 33.333 0.00 0.00 0.00 3.60
1814 2226 5.916883 AGCACTGAAATCTGAAAATCGTTTG 59.083 36.000 0.00 0.00 0.00 2.93
1815 2227 5.687285 GCACTGAAATCTGAAAATCGTTTGT 59.313 36.000 0.00 0.00 0.00 2.83
1816 2228 6.345250 GCACTGAAATCTGAAAATCGTTTGTG 60.345 38.462 0.00 0.00 0.00 3.33
1817 2229 5.687285 ACTGAAATCTGAAAATCGTTTGTGC 59.313 36.000 0.00 0.00 0.00 4.57
1818 2230 5.586339 TGAAATCTGAAAATCGTTTGTGCA 58.414 33.333 0.00 0.00 0.00 4.57
1819 2231 5.458452 TGAAATCTGAAAATCGTTTGTGCAC 59.542 36.000 10.75 10.75 0.00 4.57
1820 2232 3.347958 TCTGAAAATCGTTTGTGCACC 57.652 42.857 15.69 0.00 0.00 5.01
1821 2233 2.948979 TCTGAAAATCGTTTGTGCACCT 59.051 40.909 15.69 0.00 0.00 4.00
1822 2234 3.380004 TCTGAAAATCGTTTGTGCACCTT 59.620 39.130 15.69 0.00 0.00 3.50
1823 2235 4.111916 CTGAAAATCGTTTGTGCACCTTT 58.888 39.130 15.69 2.54 0.00 3.11
1824 2236 4.109050 TGAAAATCGTTTGTGCACCTTTC 58.891 39.130 15.69 11.39 0.00 2.62
1825 2237 4.142271 TGAAAATCGTTTGTGCACCTTTCT 60.142 37.500 15.69 0.00 0.00 2.52
1826 2238 3.626028 AATCGTTTGTGCACCTTTCTC 57.374 42.857 15.69 0.00 0.00 2.87
1827 2239 2.325583 TCGTTTGTGCACCTTTCTCT 57.674 45.000 15.69 0.00 0.00 3.10
1828 2240 3.462483 TCGTTTGTGCACCTTTCTCTA 57.538 42.857 15.69 0.00 0.00 2.43
1829 2241 3.128349 TCGTTTGTGCACCTTTCTCTAC 58.872 45.455 15.69 0.06 0.00 2.59
1830 2242 2.869801 CGTTTGTGCACCTTTCTCTACA 59.130 45.455 15.69 0.00 0.00 2.74
1831 2243 3.498397 CGTTTGTGCACCTTTCTCTACAT 59.502 43.478 15.69 0.00 0.00 2.29
1832 2244 4.611355 CGTTTGTGCACCTTTCTCTACATG 60.611 45.833 15.69 0.00 0.00 3.21
1833 2245 4.350368 TTGTGCACCTTTCTCTACATGA 57.650 40.909 15.69 0.00 0.00 3.07
1834 2246 4.558226 TGTGCACCTTTCTCTACATGAT 57.442 40.909 15.69 0.00 0.00 2.45
1835 2247 5.675684 TGTGCACCTTTCTCTACATGATA 57.324 39.130 15.69 0.00 0.00 2.15
1836 2248 5.419542 TGTGCACCTTTCTCTACATGATAC 58.580 41.667 15.69 0.00 0.00 2.24
1837 2249 5.187772 TGTGCACCTTTCTCTACATGATACT 59.812 40.000 15.69 0.00 0.00 2.12
1838 2250 6.109359 GTGCACCTTTCTCTACATGATACTT 58.891 40.000 5.22 0.00 0.00 2.24
1839 2251 6.036517 GTGCACCTTTCTCTACATGATACTTG 59.963 42.308 5.22 0.00 0.00 3.16
1840 2252 6.070824 TGCACCTTTCTCTACATGATACTTGA 60.071 38.462 0.00 0.00 0.00 3.02
1841 2253 6.818644 GCACCTTTCTCTACATGATACTTGAA 59.181 38.462 0.00 0.00 0.00 2.69
1842 2254 7.201565 GCACCTTTCTCTACATGATACTTGAAC 60.202 40.741 0.00 0.00 0.00 3.18
1843 2255 7.819415 CACCTTTCTCTACATGATACTTGAACA 59.181 37.037 0.00 0.00 0.00 3.18
1844 2256 8.543774 ACCTTTCTCTACATGATACTTGAACAT 58.456 33.333 0.00 0.00 0.00 2.71
1845 2257 9.039870 CCTTTCTCTACATGATACTTGAACATC 57.960 37.037 0.00 0.00 0.00 3.06
1846 2258 9.591792 CTTTCTCTACATGATACTTGAACATCA 57.408 33.333 0.00 0.00 35.72 3.07
1847 2259 9.942850 TTTCTCTACATGATACTTGAACATCAA 57.057 29.630 0.00 0.00 34.96 2.57
1848 2260 9.942850 TTCTCTACATGATACTTGAACATCAAA 57.057 29.630 0.00 0.00 35.73 2.69
1849 2261 9.942850 TCTCTACATGATACTTGAACATCAAAA 57.057 29.630 0.00 0.00 35.73 2.44
1850 2262 9.979270 CTCTACATGATACTTGAACATCAAAAC 57.021 33.333 0.00 0.00 35.73 2.43
1851 2263 9.725019 TCTACATGATACTTGAACATCAAAACT 57.275 29.630 0.00 0.00 35.73 2.66
1854 2266 8.632679 ACATGATACTTGAACATCAAAACTTGT 58.367 29.630 0.00 0.00 35.73 3.16
1860 2272 8.911247 ACTTGAACATCAAAACTTGTAAGAAC 57.089 30.769 0.00 0.00 35.73 3.01
1861 2273 7.973944 ACTTGAACATCAAAACTTGTAAGAACC 59.026 33.333 0.00 0.00 35.73 3.62
1862 2274 7.639113 TGAACATCAAAACTTGTAAGAACCT 57.361 32.000 0.00 0.00 0.00 3.50
1863 2275 8.740123 TGAACATCAAAACTTGTAAGAACCTA 57.260 30.769 0.00 0.00 0.00 3.08
1864 2276 8.617809 TGAACATCAAAACTTGTAAGAACCTAC 58.382 33.333 0.00 0.00 0.00 3.18
1865 2277 8.514330 AACATCAAAACTTGTAAGAACCTACA 57.486 30.769 0.00 0.00 0.00 2.74
1866 2278 8.514330 ACATCAAAACTTGTAAGAACCTACAA 57.486 30.769 0.00 0.00 39.02 2.41
1867 2279 8.962679 ACATCAAAACTTGTAAGAACCTACAAA 58.037 29.630 0.00 0.00 40.38 2.83
1868 2280 9.450807 CATCAAAACTTGTAAGAACCTACAAAG 57.549 33.333 0.00 0.00 40.38 2.77
1869 2281 8.570068 TCAAAACTTGTAAGAACCTACAAAGT 57.430 30.769 0.00 0.00 40.38 2.66
1870 2282 9.016438 TCAAAACTTGTAAGAACCTACAAAGTT 57.984 29.630 0.00 0.00 40.38 2.66
1871 2283 9.634163 CAAAACTTGTAAGAACCTACAAAGTTT 57.366 29.630 5.13 5.13 40.38 2.66
1872 2284 9.634163 AAAACTTGTAAGAACCTACAAAGTTTG 57.366 29.630 14.13 14.13 40.38 2.93
1873 2285 8.570068 AACTTGTAAGAACCTACAAAGTTTGA 57.430 30.769 22.23 5.24 40.38 2.69
1874 2286 7.982224 ACTTGTAAGAACCTACAAAGTTTGAC 58.018 34.615 22.23 6.93 40.38 3.18
1875 2287 6.930667 TGTAAGAACCTACAAAGTTTGACC 57.069 37.500 22.23 4.52 0.00 4.02
1876 2288 6.416415 TGTAAGAACCTACAAAGTTTGACCA 58.584 36.000 22.23 5.97 0.00 4.02
1877 2289 7.057894 TGTAAGAACCTACAAAGTTTGACCAT 58.942 34.615 22.23 2.18 0.00 3.55
1878 2290 6.635030 AAGAACCTACAAAGTTTGACCATC 57.365 37.500 22.23 12.27 0.00 3.51
1879 2291 5.941788 AGAACCTACAAAGTTTGACCATCT 58.058 37.500 22.23 14.03 0.00 2.90
1880 2292 6.365520 AGAACCTACAAAGTTTGACCATCTT 58.634 36.000 22.23 5.38 0.00 2.40
1881 2293 6.833933 AGAACCTACAAAGTTTGACCATCTTT 59.166 34.615 22.23 5.62 32.60 2.52
1883 2295 6.126409 ACCTACAAAGTTTGACCATCTTTGA 58.874 36.000 22.23 12.39 45.96 2.69
1884 2296 6.777580 ACCTACAAAGTTTGACCATCTTTGAT 59.222 34.615 22.23 14.45 45.96 2.57
1885 2297 7.086376 CCTACAAAGTTTGACCATCTTTGATG 58.914 38.462 22.23 16.61 45.96 3.07
1886 2298 6.469782 ACAAAGTTTGACCATCTTTGATGT 57.530 33.333 22.23 0.00 45.96 3.06
1887 2299 7.581213 ACAAAGTTTGACCATCTTTGATGTA 57.419 32.000 22.23 0.00 45.96 2.29
1888 2300 7.651808 ACAAAGTTTGACCATCTTTGATGTAG 58.348 34.615 22.23 0.00 45.96 2.74
1889 2301 5.886960 AGTTTGACCATCTTTGATGTAGC 57.113 39.130 6.78 0.00 0.00 3.58
1890 2302 5.316167 AGTTTGACCATCTTTGATGTAGCA 58.684 37.500 6.78 0.22 0.00 3.49
1891 2303 5.769662 AGTTTGACCATCTTTGATGTAGCAA 59.230 36.000 6.78 5.32 0.00 3.91
1892 2304 6.265196 AGTTTGACCATCTTTGATGTAGCAAA 59.735 34.615 6.78 9.74 36.43 3.68
1902 2314 7.992180 CTTTGATGTAGCAAAGTTTCAGTTT 57.008 32.000 12.97 0.00 45.97 2.66
1903 2315 8.411318 CTTTGATGTAGCAAAGTTTCAGTTTT 57.589 30.769 12.97 0.00 45.97 2.43
1904 2316 8.770438 TTTGATGTAGCAAAGTTTCAGTTTTT 57.230 26.923 0.00 0.00 33.16 1.94
1944 2356 7.859325 TGAATTTACTGTTTATAGAGGGTGC 57.141 36.000 0.00 0.00 0.00 5.01
1945 2357 6.826741 TGAATTTACTGTTTATAGAGGGTGCC 59.173 38.462 0.00 0.00 0.00 5.01
1946 2358 6.576778 ATTTACTGTTTATAGAGGGTGCCT 57.423 37.500 0.00 0.00 36.03 4.75
1947 2359 7.685849 ATTTACTGTTTATAGAGGGTGCCTA 57.314 36.000 0.00 0.00 31.76 3.93
1948 2360 6.726490 TTACTGTTTATAGAGGGTGCCTAG 57.274 41.667 0.00 0.00 31.76 3.02
1949 2361 3.967987 ACTGTTTATAGAGGGTGCCTAGG 59.032 47.826 3.67 3.67 31.76 3.02
1950 2362 2.704065 TGTTTATAGAGGGTGCCTAGGC 59.296 50.000 27.71 27.71 42.35 3.93
1960 2372 4.182433 GCCTAGGCACCCTGGAGC 62.182 72.222 29.33 0.00 41.49 4.70
1961 2373 2.366167 CCTAGGCACCCTGGAGCT 60.366 66.667 0.00 0.00 33.74 4.09
1962 2374 2.439104 CCTAGGCACCCTGGAGCTC 61.439 68.421 4.71 4.71 33.74 4.09
1963 2375 2.365635 TAGGCACCCTGGAGCTCC 60.366 66.667 26.78 26.78 34.61 4.70
1964 2376 2.887738 CTAGGCACCCTGGAGCTCCT 62.888 65.000 32.28 10.58 33.74 3.69
1965 2377 1.590339 TAGGCACCCTGGAGCTCCTA 61.590 60.000 32.28 17.97 34.61 2.94
1966 2378 2.736826 GGCACCCTGGAGCTCCTAC 61.737 68.421 32.28 14.93 36.82 3.18
1967 2379 1.990060 GCACCCTGGAGCTCCTACA 60.990 63.158 32.28 12.71 36.82 2.74
1968 2380 1.901085 CACCCTGGAGCTCCTACAC 59.099 63.158 32.28 7.16 36.82 2.90
1969 2381 1.306226 ACCCTGGAGCTCCTACACC 60.306 63.158 32.28 7.15 36.82 4.16
1970 2382 1.002274 CCCTGGAGCTCCTACACCT 59.998 63.158 32.28 0.00 36.82 4.00
1971 2383 0.618968 CCCTGGAGCTCCTACACCTT 60.619 60.000 32.28 0.00 36.82 3.50
1972 2384 1.280457 CCTGGAGCTCCTACACCTTT 58.720 55.000 32.28 0.00 36.82 3.11
1973 2385 1.208293 CCTGGAGCTCCTACACCTTTC 59.792 57.143 32.28 3.29 36.82 2.62
1974 2386 2.183679 CTGGAGCTCCTACACCTTTCT 58.816 52.381 32.28 0.00 36.82 2.52
1975 2387 1.902508 TGGAGCTCCTACACCTTTCTG 59.097 52.381 32.28 0.00 36.82 3.02
2025 2440 8.708378 TGTACATCAGAGTAATTTGGATCAGAT 58.292 33.333 0.00 0.00 0.00 2.90
2108 2523 8.888419 ACTGTATTTGGATCAATGATAGGATCT 58.112 33.333 0.00 0.00 39.82 2.75
2111 2526 5.837770 TTGGATCAATGATAGGATCTGCT 57.162 39.130 0.00 0.00 39.82 4.24
2112 2527 6.940430 TTGGATCAATGATAGGATCTGCTA 57.060 37.500 0.00 0.00 39.82 3.49
2169 2584 2.169832 ATCTCAAACTGTGGTGTCCG 57.830 50.000 0.00 0.00 0.00 4.79
2245 2660 0.969149 TCCGTCTCAGCAGTTCATGT 59.031 50.000 0.00 0.00 0.00 3.21
2260 2675 4.522789 AGTTCATGTTTCATTAAACGGCCT 59.477 37.500 0.00 0.00 46.63 5.19
2293 2708 0.881118 TTGATTGCGAAGTTGAGGGC 59.119 50.000 0.00 0.00 0.00 5.19
2356 2771 4.621747 GCTCAGACTATTAGCACAACTGGT 60.622 45.833 0.00 0.00 36.26 4.00
2387 2802 1.482182 TCCTCGATAGCTGTGTGCAAT 59.518 47.619 0.00 0.00 45.94 3.56
2466 2881 6.591935 TGTCAAGGTGTTCTAAGTTTGAGAT 58.408 36.000 0.00 0.00 0.00 2.75
2678 3094 5.313623 CAACTTAGTCCGCGAATTAGTTTG 58.686 41.667 8.23 0.00 29.42 2.93
2725 3141 3.009033 ACAGCTGAACAGGCAAGGTTATA 59.991 43.478 23.35 0.00 0.00 0.98
2800 3216 5.911280 CGATCCATTGTGCAATAATTCTGTC 59.089 40.000 0.00 0.00 0.00 3.51
2929 3345 4.065088 GTTCTCTATTTGCAGGTGACACA 58.935 43.478 8.08 0.00 0.00 3.72
3144 3614 1.845809 GAGTGCGTCACTTGGCAAGG 61.846 60.000 29.26 18.45 45.44 3.61
3184 3654 4.027755 CGTGTTGGTCGCTCTGTT 57.972 55.556 0.00 0.00 0.00 3.16
3185 3655 3.188773 CGTGTTGGTCGCTCTGTTA 57.811 52.632 0.00 0.00 0.00 2.41
3236 3707 1.335506 CGTTTCCGTGTTTTGGATGGG 60.336 52.381 0.00 0.00 34.91 4.00
3237 3708 1.684450 GTTTCCGTGTTTTGGATGGGT 59.316 47.619 0.00 0.00 34.91 4.51
3242 3713 2.869192 CCGTGTTTTGGATGGGTTTTTG 59.131 45.455 0.00 0.00 0.00 2.44
3247 3718 4.631813 TGTTTTGGATGGGTTTTTGTTTCG 59.368 37.500 0.00 0.00 0.00 3.46
3262 3733 0.523966 TTTCGCTTTTGCCCGGTATG 59.476 50.000 0.00 0.00 43.93 2.39
3384 3912 0.717196 AGACCTAACCTACCCAGCCT 59.283 55.000 0.00 0.00 0.00 4.58
3398 3926 1.490574 CAGCCTAGCTAACCCTGAGT 58.509 55.000 8.51 0.00 36.40 3.41
3405 3933 1.041437 GCTAACCCTGAGTAGCCGAT 58.959 55.000 0.00 0.00 0.00 4.18
3438 3966 1.601477 CACATGTGTGCAGGCCAGA 60.601 57.895 18.03 0.00 39.39 3.86
3474 4002 1.676967 CACCAAGCAGCTCCTTCCC 60.677 63.158 0.00 0.00 0.00 3.97
3511 4047 0.979665 CCACACATGAGGGTCACTCT 59.020 55.000 3.22 0.00 46.72 3.24
3568 4111 2.858974 CCCTGGACCAACCCCACT 60.859 66.667 0.00 0.00 38.00 4.00
3588 4131 3.793827 ACTGATCCCATCCTTAAACCCAT 59.206 43.478 0.00 0.00 0.00 4.00
3594 4137 4.093011 CCCATCCTTAAACCCATTGTTCA 58.907 43.478 0.00 0.00 35.67 3.18
3625 4168 2.203308 TAGCTCGCGGACCCCTAG 60.203 66.667 6.13 0.00 0.00 3.02
3662 4205 1.524482 GCCGAAGCTCAGAATCCCT 59.476 57.895 0.00 0.00 35.50 4.20
3695 4238 2.342650 GCTCCGGCAAGCAATTCCA 61.343 57.895 10.16 0.00 42.05 3.53
3786 4329 4.782019 CTGCCTTTACAATTGCAGGTTA 57.218 40.909 16.48 8.40 45.69 2.85
3787 4330 5.329035 CTGCCTTTACAATTGCAGGTTAT 57.671 39.130 16.48 0.00 45.69 1.89
3792 4335 7.172361 TGCCTTTACAATTGCAGGTTATTTTTC 59.828 33.333 16.48 2.97 0.00 2.29
3793 4336 7.621219 GCCTTTACAATTGCAGGTTATTTTTCG 60.621 37.037 16.48 0.00 0.00 3.46
3794 4337 7.148656 CCTTTACAATTGCAGGTTATTTTTCGG 60.149 37.037 5.05 0.00 0.00 4.30
3795 4338 4.565022 ACAATTGCAGGTTATTTTTCGGG 58.435 39.130 5.05 0.00 0.00 5.14
3796 4339 2.734276 TTGCAGGTTATTTTTCGGGC 57.266 45.000 0.00 0.00 0.00 6.13
3797 4340 0.892063 TGCAGGTTATTTTTCGGGCC 59.108 50.000 0.00 0.00 0.00 5.80
3798 4341 0.892063 GCAGGTTATTTTTCGGGCCA 59.108 50.000 4.39 0.00 0.00 5.36
3799 4342 1.403647 GCAGGTTATTTTTCGGGCCAC 60.404 52.381 4.39 0.00 0.00 5.01
3800 4343 2.167662 CAGGTTATTTTTCGGGCCACT 58.832 47.619 4.39 0.00 0.00 4.00
3801 4344 3.349022 CAGGTTATTTTTCGGGCCACTA 58.651 45.455 4.39 0.00 0.00 2.74
3802 4345 3.128068 CAGGTTATTTTTCGGGCCACTAC 59.872 47.826 4.39 0.00 0.00 2.73
3803 4346 3.083293 GGTTATTTTTCGGGCCACTACA 58.917 45.455 4.39 0.00 0.00 2.74
3804 4347 3.119743 GGTTATTTTTCGGGCCACTACAC 60.120 47.826 4.39 0.00 0.00 2.90
3805 4348 2.579410 ATTTTTCGGGCCACTACACT 57.421 45.000 4.39 0.00 0.00 3.55
3806 4349 1.600023 TTTTTCGGGCCACTACACTG 58.400 50.000 4.39 0.00 0.00 3.66
3807 4350 0.759959 TTTTCGGGCCACTACACTGA 59.240 50.000 4.39 0.00 0.00 3.41
3808 4351 0.981183 TTTCGGGCCACTACACTGAT 59.019 50.000 4.39 0.00 0.00 2.90
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
174 176 0.958382 TTGCGGACTACCATGCCAAC 60.958 55.000 0.00 0.00 35.59 3.77
253 255 6.784473 TCTGGATGACTGACCATATAGAACAT 59.216 38.462 0.00 0.00 35.54 2.71
254 256 6.136155 TCTGGATGACTGACCATATAGAACA 58.864 40.000 0.00 0.00 35.54 3.18
347 349 7.015064 ACCCTAAGAAGAGTTCTAAACCTGTA 58.985 38.462 0.00 0.00 39.61 2.74
437 439 3.618690 AACCTGCATCAGAGAAGTACC 57.381 47.619 0.00 0.00 32.44 3.34
472 474 2.235402 GGACCATAAACGAAGAGTCCCA 59.765 50.000 0.00 0.00 38.25 4.37
780 783 6.312426 GTGAGATATGAACAAGTCAAGTGGAG 59.688 42.308 0.00 0.00 40.50 3.86
781 784 6.166279 GTGAGATATGAACAAGTCAAGTGGA 58.834 40.000 0.00 0.00 40.50 4.02
782 785 5.934043 TGTGAGATATGAACAAGTCAAGTGG 59.066 40.000 0.00 0.00 40.50 4.00
792 795 7.495606 GTGTGTATCCAATGTGAGATATGAACA 59.504 37.037 0.00 0.00 0.00 3.18
813 816 1.000506 AGCGTTGTTATCGAGGTGTGT 59.999 47.619 0.00 0.00 0.00 3.72
843 846 6.680810 TGATTACTTCATTCTTTGTTGCTGG 58.319 36.000 0.00 0.00 0.00 4.85
884 887 7.901874 TTCGAAGTTTAATTTTGTGCTACAC 57.098 32.000 0.00 0.00 34.56 2.90
885 888 8.399425 TCTTTCGAAGTTTAATTTTGTGCTACA 58.601 29.630 0.00 0.00 0.00 2.74
887 890 9.393249 CATCTTTCGAAGTTTAATTTTGTGCTA 57.607 29.630 0.00 0.00 0.00 3.49
888 891 8.134895 TCATCTTTCGAAGTTTAATTTTGTGCT 58.865 29.630 0.00 0.00 0.00 4.40
889 892 8.280909 TCATCTTTCGAAGTTTAATTTTGTGC 57.719 30.769 0.00 0.00 0.00 4.57
895 898 9.778993 CATGTGATCATCTTTCGAAGTTTAATT 57.221 29.630 0.00 0.00 31.15 1.40
896 899 9.166173 TCATGTGATCATCTTTCGAAGTTTAAT 57.834 29.630 0.00 0.00 31.15 1.40
897 900 8.546597 TCATGTGATCATCTTTCGAAGTTTAA 57.453 30.769 0.00 0.00 31.15 1.52
898 901 8.443160 GTTCATGTGATCATCTTTCGAAGTTTA 58.557 33.333 0.00 0.00 31.15 2.01
899 902 7.301054 GTTCATGTGATCATCTTTCGAAGTTT 58.699 34.615 0.00 0.00 31.15 2.66
900 903 6.401474 CGTTCATGTGATCATCTTTCGAAGTT 60.401 38.462 0.00 0.00 31.15 2.66
901 904 5.062683 CGTTCATGTGATCATCTTTCGAAGT 59.937 40.000 0.00 0.00 31.15 3.01
902 905 5.062683 ACGTTCATGTGATCATCTTTCGAAG 59.937 40.000 0.00 0.00 31.15 3.79
903 906 4.929211 ACGTTCATGTGATCATCTTTCGAA 59.071 37.500 0.00 0.00 31.15 3.71
904 907 4.494484 ACGTTCATGTGATCATCTTTCGA 58.506 39.130 0.00 0.00 31.15 3.71
905 908 4.847365 ACGTTCATGTGATCATCTTTCG 57.153 40.909 0.00 3.36 31.15 3.46
906 909 6.178507 CGTTACGTTCATGTGATCATCTTTC 58.821 40.000 0.00 0.00 31.15 2.62
907 910 5.445939 GCGTTACGTTCATGTGATCATCTTT 60.446 40.000 6.63 0.00 31.15 2.52
908 911 4.032900 GCGTTACGTTCATGTGATCATCTT 59.967 41.667 6.63 0.00 31.15 2.40
909 912 3.551890 GCGTTACGTTCATGTGATCATCT 59.448 43.478 6.63 0.00 31.15 2.90
910 913 3.302480 GGCGTTACGTTCATGTGATCATC 60.302 47.826 6.63 0.00 31.15 2.92
911 914 2.607635 GGCGTTACGTTCATGTGATCAT 59.392 45.455 6.63 0.00 34.21 2.45
917 920 1.339235 CGTCGGCGTTACGTTCATGT 61.339 55.000 12.29 0.00 35.66 3.21
955 958 6.018994 GGTGGTAATTAAGTGCTTACTGATCG 60.019 42.308 0.00 0.00 0.00 3.69
967 970 3.118738 CGCAGAGGAGGTGGTAATTAAGT 60.119 47.826 0.00 0.00 0.00 2.24
969 972 2.169769 CCGCAGAGGAGGTGGTAATTAA 59.830 50.000 0.00 0.00 45.00 1.40
970 973 1.760613 CCGCAGAGGAGGTGGTAATTA 59.239 52.381 0.00 0.00 45.00 1.40
971 974 0.541863 CCGCAGAGGAGGTGGTAATT 59.458 55.000 0.00 0.00 45.00 1.40
972 975 1.972660 GCCGCAGAGGAGGTGGTAAT 61.973 60.000 0.00 0.00 45.00 1.89
987 991 2.099141 TATATGCAGAGAATGGCCGC 57.901 50.000 0.00 0.00 0.00 6.53
995 999 3.570125 CACCGTCTCCTTATATGCAGAGA 59.430 47.826 0.00 0.00 33.07 3.10
1014 1018 1.026718 CGGCTTGGGAATCTGACACC 61.027 60.000 0.00 0.00 0.00 4.16
1022 1026 2.998949 GAGGGACGGCTTGGGAAT 59.001 61.111 0.00 0.00 0.00 3.01
1057 1061 1.803943 CTTCGTCCCTCCACTCGAG 59.196 63.158 11.84 11.84 38.46 4.04
1058 1062 2.341101 GCTTCGTCCCTCCACTCGA 61.341 63.158 0.00 0.00 0.00 4.04
1068 1130 2.125350 CCTGGCTCTGCTTCGTCC 60.125 66.667 0.00 0.00 0.00 4.79
1086 1148 1.003233 GTGCACCTCCCACTTCCTC 60.003 63.158 5.22 0.00 0.00 3.71
1103 1165 3.411351 GCGTTGCCATGTCGTCGT 61.411 61.111 0.00 0.00 0.00 4.34
1204 1269 0.108615 CAGTCTCTGGTAACCGCCTG 60.109 60.000 0.00 0.00 0.00 4.85
1239 1304 0.740868 GCACCAGTAGAAGCGCATCA 60.741 55.000 15.84 0.00 0.00 3.07
1248 1313 2.229062 CAGTTTCTCGAGCACCAGTAGA 59.771 50.000 7.81 0.00 0.00 2.59
1278 1343 3.767806 GGTCCCCGGAGAACGTCC 61.768 72.222 0.73 0.00 42.85 4.79
1289 1354 2.930562 ACACCAGCTCAGGTCCCC 60.931 66.667 0.00 0.00 40.77 4.81
1293 1358 2.088674 GACGACACACCAGCTCAGGT 62.089 60.000 0.00 0.00 44.48 4.00
1294 1359 1.373497 GACGACACACCAGCTCAGG 60.373 63.158 0.00 0.00 0.00 3.86
1296 1361 2.734591 GGACGACACACCAGCTCA 59.265 61.111 0.00 0.00 0.00 4.26
1356 1421 4.516698 AGATGGCTTAACCGCAAATCTATG 59.483 41.667 0.00 0.00 43.94 2.23
1359 1424 2.945668 GAGATGGCTTAACCGCAAATCT 59.054 45.455 4.69 4.69 43.94 2.40
1362 1427 1.459450 GGAGATGGCTTAACCGCAAA 58.541 50.000 0.00 0.00 43.94 3.68
1392 1457 3.621805 TGGAAGCGCCAGACGGAA 61.622 61.111 2.29 0.00 43.33 4.30
1399 1464 2.125552 CATCTCGTGGAAGCGCCA 60.126 61.111 2.29 0.00 46.96 5.69
1452 1517 2.986979 TCGCTGTACACCGCCTCA 60.987 61.111 5.68 0.00 0.00 3.86
1504 1569 7.017055 GTGAAGAGAAGAACTTACGACTCTAC 58.983 42.308 0.00 0.00 34.33 2.59
1505 1570 6.935771 AGTGAAGAGAAGAACTTACGACTCTA 59.064 38.462 0.00 0.00 34.33 2.43
1518 1583 4.820173 TCGTGTAGTCAAGTGAAGAGAAGA 59.180 41.667 0.00 0.00 0.00 2.87
1551 1963 9.663904 CCACGTGTTAATGATAATTTTCCATAG 57.336 33.333 15.65 0.00 0.00 2.23
1572 1984 5.012046 TCTCATGGATATAAGCATTCCACGT 59.988 40.000 0.00 0.00 42.09 4.49
1573 1985 5.482006 TCTCATGGATATAAGCATTCCACG 58.518 41.667 0.00 0.00 42.09 4.94
1574 1986 6.370994 CACTCTCATGGATATAAGCATTCCAC 59.629 42.308 0.00 0.00 42.09 4.02
1575 1987 6.470278 CACTCTCATGGATATAAGCATTCCA 58.530 40.000 0.00 0.00 43.37 3.53
1576 1988 5.879223 CCACTCTCATGGATATAAGCATTCC 59.121 44.000 0.00 0.00 43.02 3.01
1577 1989 6.471146 ACCACTCTCATGGATATAAGCATTC 58.529 40.000 0.00 0.00 43.02 2.67
1578 1990 6.445451 ACCACTCTCATGGATATAAGCATT 57.555 37.500 0.00 0.00 43.02 3.56
1579 1991 6.445451 AACCACTCTCATGGATATAAGCAT 57.555 37.500 0.00 0.00 43.02 3.79
1581 1993 7.283127 TGAAAAACCACTCTCATGGATATAAGC 59.717 37.037 0.00 0.00 43.02 3.09
1582 1994 8.737168 TGAAAAACCACTCTCATGGATATAAG 57.263 34.615 0.00 0.00 43.02 1.73
1583 1995 8.956426 GTTGAAAAACCACTCTCATGGATATAA 58.044 33.333 0.00 0.00 43.02 0.98
1584 1996 8.328758 AGTTGAAAAACCACTCTCATGGATATA 58.671 33.333 0.00 0.00 43.02 0.86
1585 1997 7.177878 AGTTGAAAAACCACTCTCATGGATAT 58.822 34.615 0.00 0.00 43.02 1.63
1586 1998 6.542821 AGTTGAAAAACCACTCTCATGGATA 58.457 36.000 0.00 0.00 43.02 2.59
1587 1999 5.388654 AGTTGAAAAACCACTCTCATGGAT 58.611 37.500 0.00 0.00 43.02 3.41
1588 2000 4.792068 AGTTGAAAAACCACTCTCATGGA 58.208 39.130 0.00 0.00 43.02 3.41
1589 2001 4.022849 GGAGTTGAAAAACCACTCTCATGG 60.023 45.833 0.00 0.00 46.10 3.66
1590 2002 4.022849 GGGAGTTGAAAAACCACTCTCATG 60.023 45.833 0.00 0.00 0.00 3.07
1591 2003 4.145052 GGGAGTTGAAAAACCACTCTCAT 58.855 43.478 0.00 0.00 0.00 2.90
1592 2004 3.551846 GGGAGTTGAAAAACCACTCTCA 58.448 45.455 0.00 0.00 0.00 3.27
1593 2005 2.548480 CGGGAGTTGAAAAACCACTCTC 59.452 50.000 0.00 0.00 0.00 3.20
1594 2006 2.572290 CGGGAGTTGAAAAACCACTCT 58.428 47.619 0.00 0.00 0.00 3.24
1595 2007 1.607148 CCGGGAGTTGAAAAACCACTC 59.393 52.381 0.00 0.00 0.00 3.51
1596 2008 1.064240 ACCGGGAGTTGAAAAACCACT 60.064 47.619 6.32 0.00 0.00 4.00
1597 2009 1.066454 CACCGGGAGTTGAAAAACCAC 59.934 52.381 6.32 0.00 0.00 4.16
1598 2010 1.394618 CACCGGGAGTTGAAAAACCA 58.605 50.000 6.32 0.00 0.00 3.67
1599 2011 0.031585 GCACCGGGAGTTGAAAAACC 59.968 55.000 6.32 0.00 0.00 3.27
1600 2012 0.031585 GGCACCGGGAGTTGAAAAAC 59.968 55.000 6.32 0.00 0.00 2.43
1601 2013 0.106419 AGGCACCGGGAGTTGAAAAA 60.106 50.000 6.32 0.00 0.00 1.94
1602 2014 0.766131 TAGGCACCGGGAGTTGAAAA 59.234 50.000 6.32 0.00 0.00 2.29
1603 2015 0.323629 CTAGGCACCGGGAGTTGAAA 59.676 55.000 6.32 0.00 0.00 2.69
1604 2016 1.550130 CCTAGGCACCGGGAGTTGAA 61.550 60.000 6.32 0.00 0.00 2.69
1605 2017 1.987855 CCTAGGCACCGGGAGTTGA 60.988 63.158 6.32 0.00 0.00 3.18
1606 2018 2.584608 CCTAGGCACCGGGAGTTG 59.415 66.667 6.32 0.00 0.00 3.16
1607 2019 3.400054 GCCTAGGCACCGGGAGTT 61.400 66.667 29.33 0.00 41.49 3.01
1617 2029 2.606751 TATAGAGAGGGTGCCTAGGC 57.393 55.000 27.71 27.71 42.35 3.93
1618 2030 4.223953 TGTTTATAGAGAGGGTGCCTAGG 58.776 47.826 3.67 3.67 31.76 3.02
1619 2031 4.896482 ACTGTTTATAGAGAGGGTGCCTAG 59.104 45.833 0.00 0.00 31.76 3.02
1620 2032 4.880164 ACTGTTTATAGAGAGGGTGCCTA 58.120 43.478 0.00 0.00 31.76 3.93
1621 2033 3.725634 ACTGTTTATAGAGAGGGTGCCT 58.274 45.455 0.00 0.00 36.03 4.75
1622 2034 5.609533 TTACTGTTTATAGAGAGGGTGCC 57.390 43.478 0.00 0.00 0.00 5.01
1623 2035 7.916914 TTTTTACTGTTTATAGAGAGGGTGC 57.083 36.000 0.00 0.00 0.00 5.01
1656 2068 9.857957 ATTTGATGTTGCAAAGTTTCAATTTTT 57.142 22.222 0.00 0.00 40.68 1.94
1660 2072 9.491675 TCATATTTGATGTTGCAAAGTTTCAAT 57.508 25.926 0.00 0.00 40.68 2.57
1661 2073 8.883954 TCATATTTGATGTTGCAAAGTTTCAA 57.116 26.923 0.00 5.65 40.68 2.69
1662 2074 9.142515 GATCATATTTGATGTTGCAAAGTTTCA 57.857 29.630 0.00 0.00 42.73 2.69
1663 2075 9.142515 TGATCATATTTGATGTTGCAAAGTTTC 57.857 29.630 0.00 0.00 42.73 2.78
1664 2076 9.491675 TTGATCATATTTGATGTTGCAAAGTTT 57.508 25.926 0.00 0.00 42.73 2.66
1665 2077 9.491675 TTTGATCATATTTGATGTTGCAAAGTT 57.508 25.926 0.00 0.00 42.73 2.66
1666 2078 8.928733 GTTTGATCATATTTGATGTTGCAAAGT 58.071 29.630 0.00 0.00 42.73 2.66
1667 2079 9.146984 AGTTTGATCATATTTGATGTTGCAAAG 57.853 29.630 0.00 0.00 42.73 2.77
1668 2080 9.491675 AAGTTTGATCATATTTGATGTTGCAAA 57.508 25.926 0.00 5.30 42.73 3.68
1669 2081 9.491675 AAAGTTTGATCATATTTGATGTTGCAA 57.508 25.926 3.15 0.00 42.73 4.08
1670 2082 8.927721 CAAAGTTTGATCATATTTGATGTTGCA 58.072 29.630 10.19 0.00 42.73 4.08
1671 2083 8.928733 ACAAAGTTTGATCATATTTGATGTTGC 58.071 29.630 22.23 0.00 42.73 4.17
1682 2094 9.237187 TGCAATAACCTACAAAGTTTGATCATA 57.763 29.630 22.23 8.53 0.00 2.15
1683 2095 8.121305 TGCAATAACCTACAAAGTTTGATCAT 57.879 30.769 22.23 2.18 0.00 2.45
1684 2096 7.517614 TGCAATAACCTACAAAGTTTGATCA 57.482 32.000 22.23 5.97 0.00 2.92
1685 2097 8.082242 ACTTGCAATAACCTACAAAGTTTGATC 58.918 33.333 22.23 0.00 0.00 2.92
1686 2098 7.951591 ACTTGCAATAACCTACAAAGTTTGAT 58.048 30.769 22.23 8.93 0.00 2.57
1687 2099 7.341445 ACTTGCAATAACCTACAAAGTTTGA 57.659 32.000 22.23 5.24 0.00 2.69
1688 2100 8.419076 AAACTTGCAATAACCTACAAAGTTTG 57.581 30.769 14.13 14.13 30.04 2.93
1689 2101 9.093970 GAAAACTTGCAATAACCTACAAAGTTT 57.906 29.630 0.00 0.00 31.21 2.66
1690 2102 8.254508 TGAAAACTTGCAATAACCTACAAAGTT 58.745 29.630 0.00 0.00 0.00 2.66
1691 2103 7.777095 TGAAAACTTGCAATAACCTACAAAGT 58.223 30.769 0.00 0.00 0.00 2.66
1692 2104 8.702438 CATGAAAACTTGCAATAACCTACAAAG 58.298 33.333 0.00 0.00 0.00 2.77
1693 2105 7.170658 GCATGAAAACTTGCAATAACCTACAAA 59.829 33.333 0.00 0.00 0.00 2.83
1694 2106 6.644592 GCATGAAAACTTGCAATAACCTACAA 59.355 34.615 0.00 0.00 0.00 2.41
1695 2107 6.155827 GCATGAAAACTTGCAATAACCTACA 58.844 36.000 0.00 0.00 0.00 2.74
1696 2108 5.576774 GGCATGAAAACTTGCAATAACCTAC 59.423 40.000 0.00 0.00 0.00 3.18
1697 2109 5.244851 TGGCATGAAAACTTGCAATAACCTA 59.755 36.000 0.00 0.00 0.00 3.08
1698 2110 4.040217 TGGCATGAAAACTTGCAATAACCT 59.960 37.500 0.00 0.00 0.00 3.50
1699 2111 4.314121 TGGCATGAAAACTTGCAATAACC 58.686 39.130 0.00 0.00 0.00 2.85
1700 2112 5.921004 TTGGCATGAAAACTTGCAATAAC 57.079 34.783 0.00 0.00 0.00 1.89
1701 2113 6.932356 TTTTGGCATGAAAACTTGCAATAA 57.068 29.167 0.00 0.00 0.00 1.40
1702 2114 6.932356 TTTTTGGCATGAAAACTTGCAATA 57.068 29.167 0.00 0.00 0.00 1.90
1703 2115 5.831702 TTTTTGGCATGAAAACTTGCAAT 57.168 30.435 0.00 0.00 0.00 3.56
1727 2139 7.148086 TGTGTGTAGAGCTCTTTGAATGTTTTT 60.148 33.333 23.84 0.00 0.00 1.94
1728 2140 6.318648 TGTGTGTAGAGCTCTTTGAATGTTTT 59.681 34.615 23.84 0.00 0.00 2.43
1729 2141 5.822519 TGTGTGTAGAGCTCTTTGAATGTTT 59.177 36.000 23.84 0.00 0.00 2.83
1730 2142 5.368145 TGTGTGTAGAGCTCTTTGAATGTT 58.632 37.500 23.84 0.00 0.00 2.71
1731 2143 4.960938 TGTGTGTAGAGCTCTTTGAATGT 58.039 39.130 23.84 0.00 0.00 2.71
1732 2144 5.929697 TTGTGTGTAGAGCTCTTTGAATG 57.070 39.130 23.84 0.00 0.00 2.67
1733 2145 6.942532 TTTTGTGTGTAGAGCTCTTTGAAT 57.057 33.333 23.84 0.00 0.00 2.57
1734 2146 6.751514 TTTTTGTGTGTAGAGCTCTTTGAA 57.248 33.333 23.84 0.00 0.00 2.69
1754 2166 8.445493 CAAAACTTCAAGCACTGAAATCTTTTT 58.555 29.630 3.24 4.42 43.54 1.94
1755 2167 7.818930 TCAAAACTTCAAGCACTGAAATCTTTT 59.181 29.630 3.24 4.88 43.54 2.27
1756 2168 7.322664 TCAAAACTTCAAGCACTGAAATCTTT 58.677 30.769 3.24 1.50 43.54 2.52
1757 2169 6.866480 TCAAAACTTCAAGCACTGAAATCTT 58.134 32.000 3.24 0.00 43.54 2.40
1758 2170 6.455360 TCAAAACTTCAAGCACTGAAATCT 57.545 33.333 3.24 0.00 43.54 2.40
1759 2171 5.174579 GCTCAAAACTTCAAGCACTGAAATC 59.825 40.000 3.24 0.00 43.54 2.17
1760 2172 5.045872 GCTCAAAACTTCAAGCACTGAAAT 58.954 37.500 3.24 0.00 43.54 2.17
1761 2173 4.082300 TGCTCAAAACTTCAAGCACTGAAA 60.082 37.500 3.24 0.00 43.54 2.69
1762 2174 3.443329 TGCTCAAAACTTCAAGCACTGAA 59.557 39.130 1.79 1.79 41.93 3.02
1763 2175 3.016031 TGCTCAAAACTTCAAGCACTGA 58.984 40.909 0.00 0.00 39.69 3.41
1764 2176 3.425577 TGCTCAAAACTTCAAGCACTG 57.574 42.857 0.00 0.00 39.69 3.66
1767 2179 4.454728 AAAGTGCTCAAAACTTCAAGCA 57.545 36.364 0.00 0.00 42.16 3.91
1768 2180 5.051441 GCTAAAAGTGCTCAAAACTTCAAGC 60.051 40.000 6.93 6.93 36.87 4.01
1769 2181 6.020360 GTGCTAAAAGTGCTCAAAACTTCAAG 60.020 38.462 0.00 0.00 36.87 3.02
1770 2182 5.804979 GTGCTAAAAGTGCTCAAAACTTCAA 59.195 36.000 0.00 0.00 36.87 2.69
1771 2183 5.125417 AGTGCTAAAAGTGCTCAAAACTTCA 59.875 36.000 0.00 0.00 36.87 3.02
1772 2184 5.456822 CAGTGCTAAAAGTGCTCAAAACTTC 59.543 40.000 0.00 0.00 36.87 3.01
1773 2185 5.125417 TCAGTGCTAAAAGTGCTCAAAACTT 59.875 36.000 0.00 0.00 39.55 2.66
1774 2186 4.640201 TCAGTGCTAAAAGTGCTCAAAACT 59.360 37.500 0.00 0.00 0.00 2.66
1775 2187 4.920376 TCAGTGCTAAAAGTGCTCAAAAC 58.080 39.130 0.00 0.00 0.00 2.43
1776 2188 5.574891 TTCAGTGCTAAAAGTGCTCAAAA 57.425 34.783 0.00 0.00 0.00 2.44
1777 2189 5.574891 TTTCAGTGCTAAAAGTGCTCAAA 57.425 34.783 0.00 0.00 0.00 2.69
1778 2190 5.532406 AGATTTCAGTGCTAAAAGTGCTCAA 59.468 36.000 0.00 0.00 0.00 3.02
1779 2191 5.049198 CAGATTTCAGTGCTAAAAGTGCTCA 60.049 40.000 0.00 0.00 0.00 4.26
1780 2192 5.180117 TCAGATTTCAGTGCTAAAAGTGCTC 59.820 40.000 0.00 0.00 0.00 4.26
1781 2193 5.065914 TCAGATTTCAGTGCTAAAAGTGCT 58.934 37.500 0.00 0.00 0.00 4.40
1782 2194 5.362556 TCAGATTTCAGTGCTAAAAGTGC 57.637 39.130 0.00 0.00 0.00 4.40
1783 2195 8.807667 ATTTTCAGATTTCAGTGCTAAAAGTG 57.192 30.769 0.00 0.00 0.00 3.16
1784 2196 7.805071 CGATTTTCAGATTTCAGTGCTAAAAGT 59.195 33.333 0.00 0.00 0.00 2.66
1785 2197 7.805071 ACGATTTTCAGATTTCAGTGCTAAAAG 59.195 33.333 0.00 0.00 0.00 2.27
1786 2198 7.648142 ACGATTTTCAGATTTCAGTGCTAAAA 58.352 30.769 0.00 0.00 0.00 1.52
1787 2199 7.202016 ACGATTTTCAGATTTCAGTGCTAAA 57.798 32.000 0.00 0.00 0.00 1.85
1788 2200 6.801539 ACGATTTTCAGATTTCAGTGCTAA 57.198 33.333 0.00 0.00 0.00 3.09
1789 2201 6.801539 AACGATTTTCAGATTTCAGTGCTA 57.198 33.333 0.00 0.00 0.00 3.49
1790 2202 5.695851 AACGATTTTCAGATTTCAGTGCT 57.304 34.783 0.00 0.00 0.00 4.40
1791 2203 5.687285 ACAAACGATTTTCAGATTTCAGTGC 59.313 36.000 0.00 0.00 0.00 4.40
1792 2204 6.345250 GCACAAACGATTTTCAGATTTCAGTG 60.345 38.462 0.00 0.00 0.00 3.66
1793 2205 5.687285 GCACAAACGATTTTCAGATTTCAGT 59.313 36.000 0.00 0.00 0.00 3.41
1794 2206 5.686841 TGCACAAACGATTTTCAGATTTCAG 59.313 36.000 0.00 0.00 0.00 3.02
1795 2207 5.458452 GTGCACAAACGATTTTCAGATTTCA 59.542 36.000 13.17 0.00 0.00 2.69
1796 2208 5.107875 GGTGCACAAACGATTTTCAGATTTC 60.108 40.000 20.43 0.00 0.00 2.17
1797 2209 4.744631 GGTGCACAAACGATTTTCAGATTT 59.255 37.500 20.43 0.00 0.00 2.17
1798 2210 4.037923 AGGTGCACAAACGATTTTCAGATT 59.962 37.500 20.43 0.00 0.00 2.40
1799 2211 3.569701 AGGTGCACAAACGATTTTCAGAT 59.430 39.130 20.43 0.00 0.00 2.90
1800 2212 2.948979 AGGTGCACAAACGATTTTCAGA 59.051 40.909 20.43 0.00 0.00 3.27
1801 2213 3.354089 AGGTGCACAAACGATTTTCAG 57.646 42.857 20.43 0.00 0.00 3.02
1802 2214 3.791973 AAGGTGCACAAACGATTTTCA 57.208 38.095 20.43 0.00 0.00 2.69
1803 2215 4.359706 AGAAAGGTGCACAAACGATTTTC 58.640 39.130 20.43 14.41 0.00 2.29
1804 2216 4.097892 AGAGAAAGGTGCACAAACGATTTT 59.902 37.500 20.43 6.85 0.00 1.82
1805 2217 3.632145 AGAGAAAGGTGCACAAACGATTT 59.368 39.130 20.43 8.87 0.00 2.17
1806 2218 3.214328 AGAGAAAGGTGCACAAACGATT 58.786 40.909 20.43 3.53 0.00 3.34
1807 2219 2.851195 AGAGAAAGGTGCACAAACGAT 58.149 42.857 20.43 0.00 0.00 3.73
1808 2220 2.325583 AGAGAAAGGTGCACAAACGA 57.674 45.000 20.43 0.00 0.00 3.85
1809 2221 2.869801 TGTAGAGAAAGGTGCACAAACG 59.130 45.455 20.43 0.00 0.00 3.60
1810 2222 4.515191 TCATGTAGAGAAAGGTGCACAAAC 59.485 41.667 20.43 6.81 0.00 2.93
1811 2223 4.713553 TCATGTAGAGAAAGGTGCACAAA 58.286 39.130 20.43 0.00 0.00 2.83
1812 2224 4.350368 TCATGTAGAGAAAGGTGCACAA 57.650 40.909 20.43 0.00 0.00 3.33
1813 2225 4.558226 ATCATGTAGAGAAAGGTGCACA 57.442 40.909 20.43 0.00 0.00 4.57
1814 2226 5.665459 AGTATCATGTAGAGAAAGGTGCAC 58.335 41.667 8.80 8.80 0.00 4.57
1815 2227 5.939764 AGTATCATGTAGAGAAAGGTGCA 57.060 39.130 0.00 0.00 0.00 4.57
1816 2228 6.341316 TCAAGTATCATGTAGAGAAAGGTGC 58.659 40.000 0.00 0.00 0.00 5.01
1817 2229 7.819415 TGTTCAAGTATCATGTAGAGAAAGGTG 59.181 37.037 0.00 0.00 0.00 4.00
1818 2230 7.907389 TGTTCAAGTATCATGTAGAGAAAGGT 58.093 34.615 0.00 0.00 0.00 3.50
1819 2231 8.954950 ATGTTCAAGTATCATGTAGAGAAAGG 57.045 34.615 0.00 0.00 0.00 3.11
1820 2232 9.591792 TGATGTTCAAGTATCATGTAGAGAAAG 57.408 33.333 0.00 0.00 0.00 2.62
1821 2233 9.942850 TTGATGTTCAAGTATCATGTAGAGAAA 57.057 29.630 0.00 0.00 33.68 2.52
1822 2234 9.942850 TTTGATGTTCAAGTATCATGTAGAGAA 57.057 29.630 0.00 0.00 37.70 2.87
1823 2235 9.942850 TTTTGATGTTCAAGTATCATGTAGAGA 57.057 29.630 0.00 0.00 37.70 3.10
1824 2236 9.979270 GTTTTGATGTTCAAGTATCATGTAGAG 57.021 33.333 0.00 0.00 37.70 2.43
1825 2237 9.725019 AGTTTTGATGTTCAAGTATCATGTAGA 57.275 29.630 0.00 0.00 37.70 2.59
1828 2240 8.632679 ACAAGTTTTGATGTTCAAGTATCATGT 58.367 29.630 0.00 0.00 37.70 3.21
1834 2246 9.997482 GTTCTTACAAGTTTTGATGTTCAAGTA 57.003 29.630 0.00 0.00 37.70 2.24
1835 2247 7.973944 GGTTCTTACAAGTTTTGATGTTCAAGT 59.026 33.333 0.00 0.00 37.70 3.16
1836 2248 8.190784 AGGTTCTTACAAGTTTTGATGTTCAAG 58.809 33.333 0.00 0.00 37.70 3.02
1837 2249 8.062065 AGGTTCTTACAAGTTTTGATGTTCAA 57.938 30.769 0.00 0.00 34.03 2.69
1838 2250 7.639113 AGGTTCTTACAAGTTTTGATGTTCA 57.361 32.000 0.00 0.00 0.00 3.18
1839 2251 8.617809 TGTAGGTTCTTACAAGTTTTGATGTTC 58.382 33.333 0.00 0.00 30.94 3.18
1840 2252 8.514330 TGTAGGTTCTTACAAGTTTTGATGTT 57.486 30.769 0.00 0.00 30.94 2.71
1841 2253 8.514330 TTGTAGGTTCTTACAAGTTTTGATGT 57.486 30.769 3.93 0.00 38.31 3.06
1842 2254 9.450807 CTTTGTAGGTTCTTACAAGTTTTGATG 57.549 33.333 7.38 0.00 42.59 3.07
1843 2255 9.185680 ACTTTGTAGGTTCTTACAAGTTTTGAT 57.814 29.630 7.38 0.00 42.59 2.57
1844 2256 8.570068 ACTTTGTAGGTTCTTACAAGTTTTGA 57.430 30.769 7.38 0.00 42.59 2.69
1845 2257 9.634163 AAACTTTGTAGGTTCTTACAAGTTTTG 57.366 29.630 17.73 8.87 42.59 2.44
1846 2258 9.634163 CAAACTTTGTAGGTTCTTACAAGTTTT 57.366 29.630 19.16 14.24 42.59 2.43
1847 2259 9.016438 TCAAACTTTGTAGGTTCTTACAAGTTT 57.984 29.630 17.73 17.73 42.59 2.66
1848 2260 8.456471 GTCAAACTTTGTAGGTTCTTACAAGTT 58.544 33.333 7.38 10.15 42.59 2.66
1849 2261 7.066645 GGTCAAACTTTGTAGGTTCTTACAAGT 59.933 37.037 7.38 6.11 42.59 3.16
1850 2262 7.066525 TGGTCAAACTTTGTAGGTTCTTACAAG 59.933 37.037 7.38 5.65 42.59 3.16
1851 2263 6.885376 TGGTCAAACTTTGTAGGTTCTTACAA 59.115 34.615 1.44 3.93 40.69 2.41
1852 2264 6.416415 TGGTCAAACTTTGTAGGTTCTTACA 58.584 36.000 1.44 0.00 0.00 2.41
1853 2265 6.930667 TGGTCAAACTTTGTAGGTTCTTAC 57.069 37.500 1.44 0.00 0.00 2.34
1854 2266 7.514721 AGATGGTCAAACTTTGTAGGTTCTTA 58.485 34.615 1.44 0.00 0.00 2.10
1855 2267 6.365520 AGATGGTCAAACTTTGTAGGTTCTT 58.634 36.000 1.44 0.00 0.00 2.52
1856 2268 5.941788 AGATGGTCAAACTTTGTAGGTTCT 58.058 37.500 1.44 0.00 0.00 3.01
1857 2269 6.635030 AAGATGGTCAAACTTTGTAGGTTC 57.365 37.500 1.44 0.00 0.00 3.62
1858 2270 6.605594 TCAAAGATGGTCAAACTTTGTAGGTT 59.394 34.615 21.03 0.00 45.72 3.50
1859 2271 6.126409 TCAAAGATGGTCAAACTTTGTAGGT 58.874 36.000 21.03 0.00 45.72 3.08
1860 2272 6.633500 TCAAAGATGGTCAAACTTTGTAGG 57.367 37.500 21.03 7.58 45.72 3.18
1861 2273 7.651808 ACATCAAAGATGGTCAAACTTTGTAG 58.348 34.615 21.03 18.21 45.72 2.74
1862 2274 7.581213 ACATCAAAGATGGTCAAACTTTGTA 57.419 32.000 21.03 14.14 45.72 2.41
1863 2275 6.469782 ACATCAAAGATGGTCAAACTTTGT 57.530 33.333 21.03 12.86 45.72 2.83
1864 2276 6.583806 GCTACATCAAAGATGGTCAAACTTTG 59.416 38.462 18.43 18.43 46.42 2.77
1865 2277 6.265196 TGCTACATCAAAGATGGTCAAACTTT 59.735 34.615 11.29 0.00 34.77 2.66
1866 2278 5.769662 TGCTACATCAAAGATGGTCAAACTT 59.230 36.000 11.29 0.00 0.00 2.66
1867 2279 5.316167 TGCTACATCAAAGATGGTCAAACT 58.684 37.500 11.29 0.00 0.00 2.66
1868 2280 5.627499 TGCTACATCAAAGATGGTCAAAC 57.373 39.130 11.29 0.00 0.00 2.93
1869 2281 6.647334 TTTGCTACATCAAAGATGGTCAAA 57.353 33.333 11.29 12.88 32.69 2.69
1879 2291 8.770438 AAAAACTGAAACTTTGCTACATCAAA 57.230 26.923 0.00 0.00 35.01 2.69
1918 2330 8.736244 GCACCCTCTATAAACAGTAAATTCAAA 58.264 33.333 0.00 0.00 0.00 2.69
1919 2331 7.338449 GGCACCCTCTATAAACAGTAAATTCAA 59.662 37.037 0.00 0.00 0.00 2.69
1920 2332 6.826741 GGCACCCTCTATAAACAGTAAATTCA 59.173 38.462 0.00 0.00 0.00 2.57
1921 2333 7.054751 AGGCACCCTCTATAAACAGTAAATTC 58.945 38.462 0.00 0.00 0.00 2.17
1922 2334 6.970191 AGGCACCCTCTATAAACAGTAAATT 58.030 36.000 0.00 0.00 0.00 1.82
1923 2335 6.576778 AGGCACCCTCTATAAACAGTAAAT 57.423 37.500 0.00 0.00 0.00 1.40
1924 2336 6.099269 CCTAGGCACCCTCTATAAACAGTAAA 59.901 42.308 0.00 0.00 34.61 2.01
1925 2337 5.601313 CCTAGGCACCCTCTATAAACAGTAA 59.399 44.000 0.00 0.00 34.61 2.24
1926 2338 5.145564 CCTAGGCACCCTCTATAAACAGTA 58.854 45.833 0.00 0.00 34.61 2.74
1927 2339 3.967987 CCTAGGCACCCTCTATAAACAGT 59.032 47.826 0.00 0.00 34.61 3.55
1928 2340 3.244249 GCCTAGGCACCCTCTATAAACAG 60.244 52.174 29.33 0.00 41.49 3.16
1929 2341 2.704065 GCCTAGGCACCCTCTATAAACA 59.296 50.000 29.33 0.00 41.49 2.83
1930 2342 3.404224 GCCTAGGCACCCTCTATAAAC 57.596 52.381 29.33 0.00 41.49 2.01
1943 2355 4.182433 GCTCCAGGGTGCCTAGGC 62.182 72.222 27.71 27.71 42.35 3.93
1944 2356 2.366167 AGCTCCAGGGTGCCTAGG 60.366 66.667 3.67 3.67 35.48 3.02
1945 2357 2.439104 GGAGCTCCAGGGTGCCTAG 61.439 68.421 28.43 0.00 35.48 3.02
1946 2358 1.590339 TAGGAGCTCCAGGGTGCCTA 61.590 60.000 33.90 12.54 38.89 3.93
1947 2359 2.948382 TAGGAGCTCCAGGGTGCCT 61.948 63.158 33.90 13.61 38.89 4.75
1948 2360 2.365635 TAGGAGCTCCAGGGTGCC 60.366 66.667 33.90 5.53 38.89 5.01
1949 2361 1.990060 TGTAGGAGCTCCAGGGTGC 60.990 63.158 33.90 17.29 38.89 5.01
1950 2362 1.617947 GGTGTAGGAGCTCCAGGGTG 61.618 65.000 33.90 0.00 38.89 4.61
1951 2363 1.306226 GGTGTAGGAGCTCCAGGGT 60.306 63.158 33.90 16.30 38.89 4.34
1952 2364 0.618968 AAGGTGTAGGAGCTCCAGGG 60.619 60.000 33.90 0.00 38.89 4.45
1953 2365 1.208293 GAAAGGTGTAGGAGCTCCAGG 59.792 57.143 33.90 0.00 38.89 4.45
1954 2366 2.093764 CAGAAAGGTGTAGGAGCTCCAG 60.094 54.545 33.90 5.40 38.89 3.86
1955 2367 1.902508 CAGAAAGGTGTAGGAGCTCCA 59.097 52.381 33.90 17.39 38.89 3.86
1956 2368 1.903183 ACAGAAAGGTGTAGGAGCTCC 59.097 52.381 26.22 26.22 0.00 4.70
1957 2369 3.686916 AACAGAAAGGTGTAGGAGCTC 57.313 47.619 4.71 4.71 0.00 4.09
1958 2370 6.042208 GGATATAACAGAAAGGTGTAGGAGCT 59.958 42.308 0.00 0.00 0.00 4.09
1959 2371 6.183360 TGGATATAACAGAAAGGTGTAGGAGC 60.183 42.308 0.00 0.00 0.00 4.70
1960 2372 7.361457 TGGATATAACAGAAAGGTGTAGGAG 57.639 40.000 0.00 0.00 0.00 3.69
1961 2373 7.931015 ATGGATATAACAGAAAGGTGTAGGA 57.069 36.000 0.00 0.00 0.00 2.94
1962 2374 8.980481 AAATGGATATAACAGAAAGGTGTAGG 57.020 34.615 0.00 0.00 0.00 3.18
1963 2375 9.613428 TGAAATGGATATAACAGAAAGGTGTAG 57.387 33.333 0.00 0.00 0.00 2.74
1964 2376 9.967451 TTGAAATGGATATAACAGAAAGGTGTA 57.033 29.630 0.00 0.00 0.00 2.90
1965 2377 8.877864 TTGAAATGGATATAACAGAAAGGTGT 57.122 30.769 0.00 0.00 0.00 4.16
2083 2498 9.163899 CAGATCCTATCATTGATCCAAATACAG 57.836 37.037 1.55 0.00 38.50 2.74
2169 2584 2.157738 AGCATGTGGAAGAGAACTTGC 58.842 47.619 5.76 5.76 43.86 4.01
2227 2642 1.800805 AACATGAACTGCTGAGACGG 58.199 50.000 0.00 0.00 0.00 4.79
2245 2660 2.817258 CCAGACAGGCCGTTTAATGAAA 59.183 45.455 0.00 0.00 0.00 2.69
2273 2688 1.401539 GCCCTCAACTTCGCAATCAAC 60.402 52.381 0.00 0.00 0.00 3.18
2356 2771 0.836606 TATCGAGGATGGCTGCCAAA 59.163 50.000 27.24 2.61 36.95 3.28
2466 2881 4.934356 AGAATCATGTGGGAGCCTTAAAA 58.066 39.130 0.00 0.00 0.00 1.52
2678 3094 6.297582 TCTACAGACTAGCTAGGGAACATAC 58.702 44.000 24.35 5.74 0.00 2.39
2856 3272 9.353999 GTGATCTAAATTGGACAACATTTTACC 57.646 33.333 0.00 0.00 35.14 2.85
2864 3280 5.607119 ACACGTGATCTAAATTGGACAAC 57.393 39.130 25.01 0.00 0.00 3.32
3047 3464 0.836400 ACTCCCTCGTCAATGGTGGT 60.836 55.000 0.00 0.00 0.00 4.16
3055 3472 1.077930 CGGGTAGACTCCCTCGTCA 60.078 63.158 7.97 0.00 44.95 4.35
3236 3707 2.535931 CGGGCAAAAGCGAAACAAAAAC 60.536 45.455 0.00 0.00 0.00 2.43
3237 3708 1.661112 CGGGCAAAAGCGAAACAAAAA 59.339 42.857 0.00 0.00 0.00 1.94
3242 3713 0.524414 ATACCGGGCAAAAGCGAAAC 59.476 50.000 6.32 0.00 0.00 2.78
3247 3718 1.173913 AGAACATACCGGGCAAAAGC 58.826 50.000 6.32 0.00 0.00 3.51
3357 3877 3.307269 GGGTAGGTTAGGTCTGTGGTTTC 60.307 52.174 0.00 0.00 0.00 2.78
3362 3890 1.207329 GCTGGGTAGGTTAGGTCTGTG 59.793 57.143 0.00 0.00 0.00 3.66
3384 3912 1.213678 TCGGCTACTCAGGGTTAGCTA 59.786 52.381 0.00 0.00 35.97 3.32
3398 3926 1.610522 GCGAGGGTTAGTTATCGGCTA 59.389 52.381 0.00 0.00 35.76 3.93
3405 3933 1.208535 CATGTGGGCGAGGGTTAGTTA 59.791 52.381 0.00 0.00 0.00 2.24
3479 4007 3.552384 TGTGGGTGTCGGTGGGAC 61.552 66.667 0.00 0.00 46.27 4.46
3480 4008 3.552384 GTGTGGGTGTCGGTGGGA 61.552 66.667 0.00 0.00 0.00 4.37
3481 4009 3.190738 ATGTGTGGGTGTCGGTGGG 62.191 63.158 0.00 0.00 0.00 4.61
3484 4012 1.371183 CTCATGTGTGGGTGTCGGT 59.629 57.895 0.00 0.00 0.00 4.69
3485 4013 1.375908 CCTCATGTGTGGGTGTCGG 60.376 63.158 0.00 0.00 0.00 4.79
3568 4111 4.016666 ACAATGGGTTTAAGGATGGGATCA 60.017 41.667 0.00 0.00 0.00 2.92
3588 4131 4.565652 GCTAGGGAAATGAGAGGTGAACAA 60.566 45.833 0.00 0.00 0.00 2.83
3594 4137 2.035632 CGAGCTAGGGAAATGAGAGGT 58.964 52.381 0.00 0.00 0.00 3.85
3685 4228 1.972795 ACAGCACCATTGGAATTGCTT 59.027 42.857 14.75 6.24 42.74 3.91
3695 4238 2.114616 TGGGTCAAAAACAGCACCATT 58.885 42.857 0.00 0.00 0.00 3.16
3782 4325 3.083293 TGTAGTGGCCCGAAAAATAACC 58.917 45.455 0.00 0.00 0.00 2.85
3783 4326 3.754850 AGTGTAGTGGCCCGAAAAATAAC 59.245 43.478 0.00 0.00 0.00 1.89
3784 4327 3.754323 CAGTGTAGTGGCCCGAAAAATAA 59.246 43.478 0.00 0.00 0.00 1.40
3786 4329 2.159382 CAGTGTAGTGGCCCGAAAAAT 58.841 47.619 0.00 0.00 0.00 1.82
3787 4330 1.141254 TCAGTGTAGTGGCCCGAAAAA 59.859 47.619 0.00 0.00 0.00 1.94


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.