Multiple sequence alignment - TraesCS2D01G010700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2D01G010700 chr2D 100.000 5144 0 0 1 5144 5319843 5324986 0.000000e+00 9500.0
1 TraesCS2D01G010700 chr2D 82.222 90 7 1 2809 2889 82181920 82182009 9.240000e-08 69.4
2 TraesCS2D01G010700 chr2B 88.805 2528 183 53 207 2660 6256639 6259140 0.000000e+00 3009.0
3 TraesCS2D01G010700 chr2B 89.666 1858 122 38 3323 5144 6259999 6261822 0.000000e+00 2303.0
4 TraesCS2D01G010700 chr2B 87.126 334 35 3 2878 3204 6259559 6259891 6.290000e-99 372.0
5 TraesCS2D01G010700 chr2A 91.913 1385 85 19 3264 4633 3961727 3963099 0.000000e+00 1912.0
6 TraesCS2D01G010700 chr2A 96.445 1069 33 3 1750 2816 3960351 3961416 0.000000e+00 1759.0
7 TraesCS2D01G010700 chr2A 89.561 1025 73 26 870 1871 3959343 3960356 0.000000e+00 1269.0
8 TraesCS2D01G010700 chr2A 91.429 245 12 2 4908 5144 3963777 3964020 1.380000e-85 327.0
9 TraesCS2D01G010700 chr2A 84.444 315 26 9 2886 3200 3961429 3961720 6.520000e-74 289.0
10 TraesCS2D01G010700 chr2A 89.954 219 14 7 602 813 3958653 3958870 5.070000e-70 276.0
11 TraesCS2D01G010700 chr2A 87.730 163 7 2 4675 4825 3963266 3963427 1.470000e-40 178.0
12 TraesCS2D01G010700 chr4A 90.123 81 8 0 2809 2889 455023808 455023728 7.040000e-19 106.0
13 TraesCS2D01G010700 chr4A 83.117 77 12 1 2812 2888 603496954 603497029 9.240000e-08 69.4
14 TraesCS2D01G010700 chr1A 90.123 81 5 1 2813 2893 480430446 480430369 9.110000e-18 102.0
15 TraesCS2D01G010700 chr4B 86.250 80 5 4 2813 2889 180943680 180943604 1.190000e-11 82.4
16 TraesCS2D01G010700 chr4B 82.895 76 12 1 2813 2888 556970 557044 3.320000e-07 67.6
17 TraesCS2D01G010700 chr3D 88.406 69 7 1 2844 2911 45243231 45243163 1.190000e-11 82.4
18 TraesCS2D01G010700 chr3D 97.143 35 0 1 2805 2839 254106865 254106898 2.000000e-04 58.4
19 TraesCS2D01G010700 chr5B 86.076 79 6 3 2813 2889 57488423 57488498 4.270000e-11 80.5
20 TraesCS2D01G010700 chr3B 84.091 88 9 2 2813 2898 583374113 583374029 4.270000e-11 80.5
21 TraesCS2D01G010700 chr5D 87.143 70 5 4 2849 2916 384475778 384475711 5.520000e-10 76.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2D01G010700 chr2D 5319843 5324986 5143 False 9500.000000 9500 100.000000 1 5144 1 chr2D.!!$F1 5143
1 TraesCS2D01G010700 chr2B 6256639 6261822 5183 False 1894.666667 3009 88.532333 207 5144 3 chr2B.!!$F1 4937
2 TraesCS2D01G010700 chr2A 3958653 3964020 5367 False 858.571429 1912 90.210857 602 5144 7 chr2A.!!$F1 4542

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
566 577 0.036671 AACCGCCGAGAAGTAAAGGG 60.037 55.0 0.0 0.0 0.0 3.95 F
1265 1747 0.107654 GTTGCGATCTTGTAGCCCCT 60.108 55.0 0.0 0.0 0.0 4.79 F
2625 3239 0.179936 CAGATGAACTCAGGAGGCCC 59.820 60.0 0.0 0.0 0.0 5.80 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1902 2516 1.154169 CATTTGCGCGCACATGTCT 60.154 52.632 38.72 17.26 31.59 3.41 R
3240 4083 0.550914 ACAAGTGGGGCTGAACTGAA 59.449 50.000 0.00 0.00 0.00 3.02 R
4208 5111 1.065709 GGATCGACAAAACTAGGGGCA 60.066 52.381 0.00 0.00 0.00 5.36 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 3.456317 GGCCTCGATCCATACCGT 58.544 61.111 0.00 0.00 0.00 4.83
18 19 1.006102 GGCCTCGATCCATACCGTG 60.006 63.158 0.00 0.00 0.00 4.94
19 20 1.461091 GGCCTCGATCCATACCGTGA 61.461 60.000 0.00 0.00 0.00 4.35
20 21 0.039074 GCCTCGATCCATACCGTGAG 60.039 60.000 0.00 0.00 0.00 3.51
21 22 1.319541 CCTCGATCCATACCGTGAGT 58.680 55.000 0.00 0.00 0.00 3.41
22 23 1.681793 CCTCGATCCATACCGTGAGTT 59.318 52.381 0.00 0.00 0.00 3.01
23 24 2.882761 CCTCGATCCATACCGTGAGTTA 59.117 50.000 0.00 0.00 0.00 2.24
24 25 3.317149 CCTCGATCCATACCGTGAGTTAA 59.683 47.826 0.00 0.00 0.00 2.01
25 26 4.202080 CCTCGATCCATACCGTGAGTTAAA 60.202 45.833 0.00 0.00 0.00 1.52
26 27 4.675510 TCGATCCATACCGTGAGTTAAAC 58.324 43.478 0.00 0.00 0.00 2.01
27 28 3.800506 CGATCCATACCGTGAGTTAAACC 59.199 47.826 0.00 0.00 0.00 3.27
28 29 4.441079 CGATCCATACCGTGAGTTAAACCT 60.441 45.833 0.00 0.00 0.00 3.50
29 30 4.895668 TCCATACCGTGAGTTAAACCTT 57.104 40.909 0.00 0.00 0.00 3.50
30 31 5.231702 TCCATACCGTGAGTTAAACCTTT 57.768 39.130 0.00 0.00 0.00 3.11
31 32 5.623169 TCCATACCGTGAGTTAAACCTTTT 58.377 37.500 0.00 0.00 0.00 2.27
32 33 6.767456 TCCATACCGTGAGTTAAACCTTTTA 58.233 36.000 0.00 0.00 0.00 1.52
33 34 6.875195 TCCATACCGTGAGTTAAACCTTTTAG 59.125 38.462 0.00 0.00 0.00 1.85
34 35 6.402875 CCATACCGTGAGTTAAACCTTTTAGC 60.403 42.308 0.00 0.00 0.00 3.09
35 36 4.711399 ACCGTGAGTTAAACCTTTTAGCT 58.289 39.130 0.00 0.00 0.00 3.32
36 37 4.514066 ACCGTGAGTTAAACCTTTTAGCTG 59.486 41.667 0.00 0.00 0.00 4.24
37 38 4.514066 CCGTGAGTTAAACCTTTTAGCTGT 59.486 41.667 0.00 0.00 0.00 4.40
38 39 5.440685 CGTGAGTTAAACCTTTTAGCTGTG 58.559 41.667 0.00 0.00 0.00 3.66
39 40 5.007332 CGTGAGTTAAACCTTTTAGCTGTGT 59.993 40.000 0.00 0.00 0.00 3.72
40 41 6.427974 GTGAGTTAAACCTTTTAGCTGTGTC 58.572 40.000 0.00 0.00 0.00 3.67
41 42 6.260271 GTGAGTTAAACCTTTTAGCTGTGTCT 59.740 38.462 0.00 0.00 0.00 3.41
42 43 6.482308 TGAGTTAAACCTTTTAGCTGTGTCTC 59.518 38.462 0.00 0.00 0.00 3.36
43 44 6.354130 AGTTAAACCTTTTAGCTGTGTCTCA 58.646 36.000 0.00 0.00 0.00 3.27
44 45 6.483640 AGTTAAACCTTTTAGCTGTGTCTCAG 59.516 38.462 0.00 0.00 46.12 3.35
45 46 4.423625 AACCTTTTAGCTGTGTCTCAGT 57.576 40.909 0.00 0.00 45.23 3.41
46 47 3.733337 ACCTTTTAGCTGTGTCTCAGTG 58.267 45.455 0.00 0.00 45.23 3.66
47 48 3.388024 ACCTTTTAGCTGTGTCTCAGTGA 59.612 43.478 0.00 0.00 45.23 3.41
48 49 4.040952 ACCTTTTAGCTGTGTCTCAGTGAT 59.959 41.667 0.00 0.00 45.23 3.06
49 50 4.629200 CCTTTTAGCTGTGTCTCAGTGATC 59.371 45.833 0.00 0.00 45.23 2.92
50 51 3.494045 TTAGCTGTGTCTCAGTGATCG 57.506 47.619 0.00 0.00 45.23 3.69
51 52 0.108898 AGCTGTGTCTCAGTGATCGC 60.109 55.000 0.00 0.00 45.23 4.58
52 53 0.389037 GCTGTGTCTCAGTGATCGCA 60.389 55.000 9.33 2.60 45.23 5.10
53 54 1.738365 GCTGTGTCTCAGTGATCGCAT 60.738 52.381 9.33 0.00 45.23 4.73
54 55 2.191802 CTGTGTCTCAGTGATCGCATC 58.808 52.381 9.33 0.00 39.17 3.91
55 56 1.134995 TGTGTCTCAGTGATCGCATCC 60.135 52.381 9.33 0.00 0.00 3.51
56 57 1.135915 GTGTCTCAGTGATCGCATCCT 59.864 52.381 9.33 0.00 0.00 3.24
57 58 1.406898 TGTCTCAGTGATCGCATCCTC 59.593 52.381 9.33 0.00 0.00 3.71
58 59 1.406898 GTCTCAGTGATCGCATCCTCA 59.593 52.381 9.33 0.00 0.00 3.86
59 60 2.102578 TCTCAGTGATCGCATCCTCAA 58.897 47.619 9.33 0.00 0.00 3.02
60 61 2.100418 TCTCAGTGATCGCATCCTCAAG 59.900 50.000 9.33 0.00 0.00 3.02
61 62 1.827344 TCAGTGATCGCATCCTCAAGT 59.173 47.619 9.33 0.00 0.00 3.16
62 63 3.023832 TCAGTGATCGCATCCTCAAGTA 58.976 45.455 9.33 0.00 0.00 2.24
63 64 3.067320 TCAGTGATCGCATCCTCAAGTAG 59.933 47.826 9.33 0.00 0.00 2.57
64 65 3.067320 CAGTGATCGCATCCTCAAGTAGA 59.933 47.826 9.33 0.00 0.00 2.59
65 66 3.894427 AGTGATCGCATCCTCAAGTAGAT 59.106 43.478 9.33 0.00 0.00 1.98
66 67 4.343526 AGTGATCGCATCCTCAAGTAGATT 59.656 41.667 9.33 0.00 0.00 2.40
67 68 5.053145 GTGATCGCATCCTCAAGTAGATTT 58.947 41.667 0.16 0.00 0.00 2.17
68 69 5.525378 GTGATCGCATCCTCAAGTAGATTTT 59.475 40.000 0.16 0.00 0.00 1.82
69 70 5.525012 TGATCGCATCCTCAAGTAGATTTTG 59.475 40.000 0.00 0.00 0.00 2.44
70 71 5.084818 TCGCATCCTCAAGTAGATTTTGA 57.915 39.130 0.00 0.00 33.76 2.69
71 72 5.487433 TCGCATCCTCAAGTAGATTTTGAA 58.513 37.500 0.00 0.00 34.41 2.69
72 73 5.351465 TCGCATCCTCAAGTAGATTTTGAAC 59.649 40.000 0.00 0.00 34.41 3.18
73 74 5.122239 CGCATCCTCAAGTAGATTTTGAACA 59.878 40.000 0.00 0.00 34.41 3.18
74 75 6.183360 CGCATCCTCAAGTAGATTTTGAACAT 60.183 38.462 0.00 0.00 34.41 2.71
75 76 6.971184 GCATCCTCAAGTAGATTTTGAACATG 59.029 38.462 0.00 0.00 34.41 3.21
76 77 7.478322 CATCCTCAAGTAGATTTTGAACATGG 58.522 38.462 0.00 0.00 34.41 3.66
77 78 6.542821 TCCTCAAGTAGATTTTGAACATGGT 58.457 36.000 0.00 0.00 34.41 3.55
78 79 7.685481 TCCTCAAGTAGATTTTGAACATGGTA 58.315 34.615 0.00 0.00 34.41 3.25
79 80 8.160765 TCCTCAAGTAGATTTTGAACATGGTAA 58.839 33.333 0.00 0.00 34.41 2.85
80 81 8.237267 CCTCAAGTAGATTTTGAACATGGTAAC 58.763 37.037 0.00 0.00 34.41 2.50
81 82 8.684386 TCAAGTAGATTTTGAACATGGTAACA 57.316 30.769 0.00 0.00 40.57 2.41
82 83 8.564574 TCAAGTAGATTTTGAACATGGTAACAC 58.435 33.333 0.00 0.00 39.67 3.32
96 97 4.013728 TGGTAACACCATATCACTTTGGC 58.986 43.478 0.00 0.00 44.79 4.52
97 98 4.013728 GGTAACACCATATCACTTTGGCA 58.986 43.478 0.00 0.00 38.42 4.92
98 99 4.644685 GGTAACACCATATCACTTTGGCAT 59.355 41.667 0.00 0.00 38.42 4.40
99 100 4.989279 AACACCATATCACTTTGGCATC 57.011 40.909 0.00 0.00 36.41 3.91
100 101 3.966979 ACACCATATCACTTTGGCATCA 58.033 40.909 0.00 0.00 36.41 3.07
101 102 4.343231 ACACCATATCACTTTGGCATCAA 58.657 39.130 0.00 0.00 36.41 2.57
102 103 4.771577 ACACCATATCACTTTGGCATCAAA 59.228 37.500 0.00 0.00 40.23 2.69
103 104 5.422970 ACACCATATCACTTTGGCATCAAAT 59.577 36.000 0.00 0.00 41.45 2.32
104 105 5.981315 CACCATATCACTTTGGCATCAAATC 59.019 40.000 0.00 0.00 41.45 2.17
105 106 5.657745 ACCATATCACTTTGGCATCAAATCA 59.342 36.000 0.00 0.00 41.45 2.57
106 107 5.981315 CCATATCACTTTGGCATCAAATCAC 59.019 40.000 0.00 0.00 41.45 3.06
107 108 6.406065 CCATATCACTTTGGCATCAAATCACA 60.406 38.462 0.00 0.00 41.45 3.58
108 109 4.241590 TCACTTTGGCATCAAATCACAC 57.758 40.909 0.00 0.00 41.45 3.82
109 110 3.635836 TCACTTTGGCATCAAATCACACA 59.364 39.130 0.00 0.00 41.45 3.72
110 111 3.737266 CACTTTGGCATCAAATCACACAC 59.263 43.478 0.00 0.00 41.45 3.82
111 112 3.384146 ACTTTGGCATCAAATCACACACA 59.616 39.130 0.00 0.00 41.45 3.72
112 113 3.646611 TTGGCATCAAATCACACACAG 57.353 42.857 0.00 0.00 0.00 3.66
113 114 2.585330 TGGCATCAAATCACACACAGT 58.415 42.857 0.00 0.00 0.00 3.55
114 115 4.737055 TTTGGCATCAAATCACACACAGTG 60.737 41.667 0.00 0.00 42.24 3.66
129 130 6.725246 ACACACAGTGAAAAGTTACAATAGC 58.275 36.000 7.81 0.00 36.96 2.97
130 131 6.542370 ACACACAGTGAAAAGTTACAATAGCT 59.458 34.615 7.81 0.00 36.96 3.32
131 132 7.067008 ACACACAGTGAAAAGTTACAATAGCTT 59.933 33.333 7.81 0.00 36.96 3.74
132 133 8.556194 CACACAGTGAAAAGTTACAATAGCTTA 58.444 33.333 7.81 0.00 35.23 3.09
133 134 9.116067 ACACAGTGAAAAGTTACAATAGCTTAA 57.884 29.630 7.81 0.00 0.00 1.85
134 135 9.599322 CACAGTGAAAAGTTACAATAGCTTAAG 57.401 33.333 0.00 0.00 0.00 1.85
135 136 9.555727 ACAGTGAAAAGTTACAATAGCTTAAGA 57.444 29.630 6.67 0.00 0.00 2.10
137 138 9.998106 AGTGAAAAGTTACAATAGCTTAAGAGA 57.002 29.630 6.67 0.00 0.00 3.10
142 143 7.470289 AGTTACAATAGCTTAAGAGAATGCG 57.530 36.000 6.67 0.00 0.00 4.73
143 144 7.042335 AGTTACAATAGCTTAAGAGAATGCGT 58.958 34.615 6.67 0.84 0.00 5.24
144 145 5.975410 ACAATAGCTTAAGAGAATGCGTC 57.025 39.130 6.67 0.00 0.00 5.19
145 146 5.419542 ACAATAGCTTAAGAGAATGCGTCA 58.580 37.500 6.67 0.00 0.00 4.35
146 147 6.051717 ACAATAGCTTAAGAGAATGCGTCAT 58.948 36.000 6.67 0.00 0.00 3.06
147 148 7.210174 ACAATAGCTTAAGAGAATGCGTCATA 58.790 34.615 6.67 0.00 0.00 2.15
148 149 7.169982 ACAATAGCTTAAGAGAATGCGTCATAC 59.830 37.037 6.67 0.00 0.00 2.39
149 150 4.372656 AGCTTAAGAGAATGCGTCATACC 58.627 43.478 6.67 0.00 0.00 2.73
150 151 3.182572 GCTTAAGAGAATGCGTCATACCG 59.817 47.826 6.67 0.00 0.00 4.02
151 152 4.607955 CTTAAGAGAATGCGTCATACCGA 58.392 43.478 0.00 0.00 0.00 4.69
152 153 2.493713 AGAGAATGCGTCATACCGAC 57.506 50.000 0.00 0.00 41.62 4.79
153 154 2.025155 AGAGAATGCGTCATACCGACT 58.975 47.619 0.00 0.00 42.98 4.18
154 155 2.120232 GAGAATGCGTCATACCGACTG 58.880 52.381 0.00 0.00 42.98 3.51
155 156 1.202417 AGAATGCGTCATACCGACTGG 60.202 52.381 0.00 0.00 42.98 4.00
156 157 0.821517 AATGCGTCATACCGACTGGA 59.178 50.000 0.00 0.00 42.98 3.86
157 158 0.385751 ATGCGTCATACCGACTGGAG 59.614 55.000 0.00 0.00 42.98 3.86
158 159 0.963856 TGCGTCATACCGACTGGAGT 60.964 55.000 0.00 0.00 42.98 3.85
159 160 1.019673 GCGTCATACCGACTGGAGTA 58.980 55.000 0.00 0.00 42.98 2.59
160 161 1.268437 GCGTCATACCGACTGGAGTAC 60.268 57.143 0.00 0.00 42.98 2.73
161 162 1.004185 CGTCATACCGACTGGAGTACG 60.004 57.143 0.00 0.00 42.98 3.67
162 163 2.283298 GTCATACCGACTGGAGTACGA 58.717 52.381 0.00 0.00 41.81 3.43
163 164 2.679837 GTCATACCGACTGGAGTACGAA 59.320 50.000 0.00 0.00 41.81 3.85
164 165 3.127548 GTCATACCGACTGGAGTACGAAA 59.872 47.826 0.00 0.00 41.81 3.46
165 166 3.758023 TCATACCGACTGGAGTACGAAAA 59.242 43.478 0.00 0.00 39.21 2.29
166 167 2.719426 ACCGACTGGAGTACGAAAAG 57.281 50.000 0.00 0.00 39.21 2.27
167 168 2.233271 ACCGACTGGAGTACGAAAAGA 58.767 47.619 0.00 0.00 39.21 2.52
168 169 2.624838 ACCGACTGGAGTACGAAAAGAA 59.375 45.455 0.00 0.00 39.21 2.52
169 170 2.985139 CCGACTGGAGTACGAAAAGAAC 59.015 50.000 0.00 0.00 37.49 3.01
170 171 3.551454 CCGACTGGAGTACGAAAAGAACA 60.551 47.826 0.00 0.00 37.49 3.18
171 172 3.669122 CGACTGGAGTACGAAAAGAACAG 59.331 47.826 0.00 0.00 0.00 3.16
172 173 4.618965 GACTGGAGTACGAAAAGAACAGT 58.381 43.478 0.00 0.00 40.28 3.55
173 174 4.618965 ACTGGAGTACGAAAAGAACAGTC 58.381 43.478 0.00 0.00 33.04 3.51
174 175 3.986277 TGGAGTACGAAAAGAACAGTCC 58.014 45.455 0.00 0.00 0.00 3.85
175 176 3.385433 TGGAGTACGAAAAGAACAGTCCA 59.615 43.478 0.00 0.00 0.00 4.02
176 177 4.141892 TGGAGTACGAAAAGAACAGTCCAA 60.142 41.667 0.00 0.00 0.00 3.53
177 178 4.812626 GGAGTACGAAAAGAACAGTCCAAA 59.187 41.667 0.00 0.00 0.00 3.28
178 179 5.295045 GGAGTACGAAAAGAACAGTCCAAAA 59.705 40.000 0.00 0.00 0.00 2.44
179 180 6.115450 AGTACGAAAAGAACAGTCCAAAAC 57.885 37.500 0.00 0.00 0.00 2.43
180 181 5.644636 AGTACGAAAAGAACAGTCCAAAACA 59.355 36.000 0.00 0.00 0.00 2.83
181 182 5.576447 ACGAAAAGAACAGTCCAAAACAT 57.424 34.783 0.00 0.00 0.00 2.71
182 183 5.961272 ACGAAAAGAACAGTCCAAAACATT 58.039 33.333 0.00 0.00 0.00 2.71
183 184 6.394809 ACGAAAAGAACAGTCCAAAACATTT 58.605 32.000 0.00 0.00 0.00 2.32
184 185 6.310224 ACGAAAAGAACAGTCCAAAACATTTG 59.690 34.615 0.00 0.00 0.00 2.32
185 186 6.237808 CGAAAAGAACAGTCCAAAACATTTGG 60.238 38.462 14.31 14.31 40.87 3.28
186 187 5.930837 AAGAACAGTCCAAAACATTTGGA 57.069 34.783 18.14 18.14 45.61 3.53
195 196 6.855763 TCCAAAACATTTGGAAGCTATGAT 57.144 33.333 19.40 0.00 44.90 2.45
196 197 7.953005 TCCAAAACATTTGGAAGCTATGATA 57.047 32.000 19.40 0.00 44.90 2.15
197 198 8.537728 TCCAAAACATTTGGAAGCTATGATAT 57.462 30.769 19.40 0.00 44.90 1.63
198 199 8.632679 TCCAAAACATTTGGAAGCTATGATATC 58.367 33.333 19.40 0.00 44.90 1.63
199 200 7.592533 CCAAAACATTTGGAAGCTATGATATCG 59.407 37.037 15.17 0.00 42.06 2.92
200 201 8.344831 CAAAACATTTGGAAGCTATGATATCGA 58.655 33.333 0.42 0.00 0.00 3.59
201 202 7.426929 AACATTTGGAAGCTATGATATCGAC 57.573 36.000 0.42 0.00 0.00 4.20
202 203 6.763355 ACATTTGGAAGCTATGATATCGACT 58.237 36.000 0.42 0.00 0.00 4.18
203 204 7.220030 ACATTTGGAAGCTATGATATCGACTT 58.780 34.615 0.42 0.00 0.00 3.01
204 205 7.172190 ACATTTGGAAGCTATGATATCGACTTG 59.828 37.037 0.42 0.00 0.00 3.16
205 206 5.791336 TGGAAGCTATGATATCGACTTGT 57.209 39.130 0.00 0.00 0.00 3.16
209 210 6.584563 GGAAGCTATGATATCGACTTGTTCTC 59.415 42.308 0.00 0.00 0.00 2.87
226 227 1.600013 TCTCGTCATTCGCTCTCTAGC 59.400 52.381 0.00 0.00 45.86 3.42
240 241 2.760650 TCTCTAGCGAGCCATCAAAAGA 59.239 45.455 0.00 0.00 37.19 2.52
242 243 2.497675 TCTAGCGAGCCATCAAAAGACT 59.502 45.455 0.00 0.00 0.00 3.24
243 244 1.731720 AGCGAGCCATCAAAAGACTC 58.268 50.000 0.00 0.00 0.00 3.36
245 246 1.945819 GCGAGCCATCAAAAGACTCCA 60.946 52.381 0.00 0.00 0.00 3.86
249 250 1.815003 GCCATCAAAAGACTCCAGGTG 59.185 52.381 0.00 0.00 0.00 4.00
252 253 0.110486 TCAAAAGACTCCAGGTGGGC 59.890 55.000 0.00 0.00 36.21 5.36
261 262 2.359975 CAGGTGGGCGGGAACTTC 60.360 66.667 0.00 0.00 0.00 3.01
270 271 2.741211 GGGAACTTCGGCACCGTC 60.741 66.667 9.23 0.00 40.74 4.79
273 274 1.566018 GGAACTTCGGCACCGTCTTG 61.566 60.000 9.23 1.00 40.74 3.02
274 275 0.878961 GAACTTCGGCACCGTCTTGT 60.879 55.000 9.23 1.60 40.74 3.16
275 276 0.390124 AACTTCGGCACCGTCTTGTA 59.610 50.000 9.23 0.00 40.74 2.41
276 277 0.390124 ACTTCGGCACCGTCTTGTAA 59.610 50.000 9.23 0.00 40.74 2.41
277 278 0.788391 CTTCGGCACCGTCTTGTAAC 59.212 55.000 9.23 0.00 40.74 2.50
278 279 0.390124 TTCGGCACCGTCTTGTAACT 59.610 50.000 9.23 0.00 40.74 2.24
279 280 1.246649 TCGGCACCGTCTTGTAACTA 58.753 50.000 9.23 0.00 40.74 2.24
291 292 6.033966 CGTCTTGTAACTATGCACAGTATGA 58.966 40.000 0.00 0.00 39.69 2.15
295 296 6.603237 TGTAACTATGCACAGTATGATTGC 57.397 37.500 0.00 0.00 39.69 3.56
322 331 2.239400 CATCCATGCCATGAGCTGAAT 58.761 47.619 6.18 0.00 44.23 2.57
329 338 3.423749 TGCCATGAGCTGAATCTTTCAA 58.576 40.909 0.00 0.00 44.23 2.69
332 341 4.637534 GCCATGAGCTGAATCTTTCAACTA 59.362 41.667 0.00 0.00 36.31 2.24
349 358 4.081087 TCAACTACCACCTGAATTAGCCTC 60.081 45.833 0.00 0.00 0.00 4.70
351 360 3.452627 ACTACCACCTGAATTAGCCTCAG 59.547 47.826 0.00 0.00 40.08 3.35
357 366 4.334759 CACCTGAATTAGCCTCAGTCATTG 59.665 45.833 0.00 0.00 38.96 2.82
363 372 1.035932 AGCCTCAGTCATTGCATGCC 61.036 55.000 16.68 0.00 0.00 4.40
366 375 1.089112 CTCAGTCATTGCATGCCGAA 58.911 50.000 16.68 3.73 0.00 4.30
371 380 1.016627 TCATTGCATGCCGAAGTAGC 58.983 50.000 16.68 0.00 0.00 3.58
382 391 4.320023 TGCCGAAGTAGCTTTTGAACATA 58.680 39.130 0.00 0.00 0.00 2.29
383 392 4.391830 TGCCGAAGTAGCTTTTGAACATAG 59.608 41.667 0.00 0.00 0.00 2.23
384 393 4.630069 GCCGAAGTAGCTTTTGAACATAGA 59.370 41.667 0.00 0.00 0.00 1.98
389 398 7.530861 CGAAGTAGCTTTTGAACATAGAAACAC 59.469 37.037 0.00 0.00 0.00 3.32
393 402 6.449698 AGCTTTTGAACATAGAAACACCATG 58.550 36.000 0.00 0.00 0.00 3.66
411 420 4.531732 ACCATGTTTACCTTGCCATCAAAT 59.468 37.500 0.00 0.00 0.00 2.32
415 424 4.165779 GTTTACCTTGCCATCAAATCACG 58.834 43.478 0.00 0.00 0.00 4.35
416 425 1.909700 ACCTTGCCATCAAATCACGT 58.090 45.000 0.00 0.00 0.00 4.49
419 428 0.957362 TTGCCATCAAATCACGTGCA 59.043 45.000 11.67 0.00 0.00 4.57
425 434 4.158384 CCATCAAATCACGTGCAGTAAAC 58.842 43.478 11.67 0.00 0.00 2.01
441 451 5.060446 GCAGTAAACGTTTCAATGGCATAAC 59.940 40.000 18.42 5.98 0.00 1.89
442 452 6.378582 CAGTAAACGTTTCAATGGCATAACT 58.621 36.000 18.42 8.32 0.00 2.24
443 453 6.305399 CAGTAAACGTTTCAATGGCATAACTG 59.695 38.462 18.42 16.27 0.00 3.16
473 483 6.121776 TCATACCAGCTGGAGTAAGAAAAA 57.878 37.500 39.19 10.53 38.94 1.94
495 505 2.494059 ACAGTCCAACACATTCGGAAG 58.506 47.619 0.00 0.00 0.00 3.46
499 509 2.415512 GTCCAACACATTCGGAAGCTAC 59.584 50.000 0.00 0.00 0.00 3.58
511 521 2.599082 CGGAAGCTACGATGTTGACTTC 59.401 50.000 4.87 0.00 34.23 3.01
536 547 6.174720 TGTCTACACAAAATTCCTGTCTCT 57.825 37.500 0.00 0.00 0.00 3.10
541 552 8.816894 TCTACACAAAATTCCTGTCTCTAAGAT 58.183 33.333 0.00 0.00 0.00 2.40
542 553 7.678947 ACACAAAATTCCTGTCTCTAAGATG 57.321 36.000 0.00 0.00 0.00 2.90
543 554 7.453393 ACACAAAATTCCTGTCTCTAAGATGA 58.547 34.615 0.00 0.00 0.00 2.92
544 555 7.939039 ACACAAAATTCCTGTCTCTAAGATGAA 59.061 33.333 0.00 0.00 0.00 2.57
545 556 8.786898 CACAAAATTCCTGTCTCTAAGATGAAA 58.213 33.333 0.00 0.00 0.00 2.69
550 561 9.620259 AATTCCTGTCTCTAAGATGAAATAACC 57.380 33.333 0.00 0.00 0.00 2.85
552 563 5.463724 CCTGTCTCTAAGATGAAATAACCGC 59.536 44.000 0.00 0.00 0.00 5.68
556 567 4.617959 TCTAAGATGAAATAACCGCCGAG 58.382 43.478 0.00 0.00 0.00 4.63
566 577 0.036671 AACCGCCGAGAAGTAAAGGG 60.037 55.000 0.00 0.00 0.00 3.95
570 581 1.153429 CCGAGAAGTAAAGGGCCCG 60.153 63.158 18.44 0.00 0.00 6.13
573 584 2.822701 GAAGTAAAGGGCCCGCCG 60.823 66.667 18.44 0.00 36.85 6.46
577 588 1.153107 GTAAAGGGCCCGCCGTAAT 60.153 57.895 18.44 0.00 36.85 1.89
578 589 1.146707 TAAAGGGCCCGCCGTAATC 59.853 57.895 18.44 0.00 36.85 1.75
579 590 1.624479 TAAAGGGCCCGCCGTAATCA 61.624 55.000 18.44 0.00 36.85 2.57
620 650 7.013274 TGGCAATTATAAATCTCTTGCTGTACC 59.987 37.037 16.33 4.69 41.40 3.34
621 651 7.363431 GCAATTATAAATCTCTTGCTGTACCC 58.637 38.462 11.68 0.00 39.21 3.69
629 659 7.380423 AATCTCTTGCTGTACCCTACATTAT 57.620 36.000 0.00 0.00 38.15 1.28
692 734 4.744795 TTTGCTCCTAGAGAAGACCATC 57.255 45.455 0.00 0.00 0.00 3.51
890 1348 1.319799 CCTTCTCCCCTCCCATCCT 59.680 63.158 0.00 0.00 0.00 3.24
909 1369 3.138653 TCCTCTCCTCTCTTTATACGCCT 59.861 47.826 0.00 0.00 0.00 5.52
945 1405 2.203280 CCCCATTCCGCCGCATTA 60.203 61.111 0.00 0.00 0.00 1.90
988 1463 3.898509 CCGGCAGCGGAGAGAGAG 61.899 72.222 0.52 0.00 0.00 3.20
989 1464 4.567385 CGGCAGCGGAGAGAGAGC 62.567 72.222 0.00 0.00 0.00 4.09
991 1466 2.104729 GCAGCGGAGAGAGAGCAG 59.895 66.667 0.00 0.00 0.00 4.24
992 1467 2.806929 CAGCGGAGAGAGAGCAGG 59.193 66.667 0.00 0.00 0.00 4.85
996 1471 1.724582 GCGGAGAGAGAGCAGGAGAC 61.725 65.000 0.00 0.00 0.00 3.36
1230 1708 3.568007 GCATCTCTCGTCTATTCACCTCT 59.432 47.826 0.00 0.00 0.00 3.69
1234 1712 2.510382 TCTCGTCTATTCACCTCTCCCT 59.490 50.000 0.00 0.00 0.00 4.20
1265 1747 0.107654 GTTGCGATCTTGTAGCCCCT 60.108 55.000 0.00 0.00 0.00 4.79
1266 1748 1.138266 GTTGCGATCTTGTAGCCCCTA 59.862 52.381 0.00 0.00 0.00 3.53
1267 1749 1.040646 TGCGATCTTGTAGCCCCTAG 58.959 55.000 0.00 0.00 0.00 3.02
1268 1750 1.041437 GCGATCTTGTAGCCCCTAGT 58.959 55.000 0.00 0.00 0.00 2.57
1278 1760 5.927281 TGTAGCCCCTAGTAGTGTAAAAG 57.073 43.478 0.00 0.00 0.00 2.27
1350 1836 1.402259 CTGCCGTCTGTAGATTCGTCT 59.598 52.381 0.00 0.00 0.00 4.18
1370 1856 7.306213 TCGTCTGAGTGTTCTAGATTTACTTG 58.694 38.462 0.00 0.00 0.00 3.16
1426 1915 7.658982 TCAGATTAGCTCGCATAATTTTCATCT 59.341 33.333 0.00 0.00 0.00 2.90
1474 1963 3.702045 GACTACCCAGATGCTAGTCAGTT 59.298 47.826 9.43 0.00 37.43 3.16
1528 2024 2.821366 CTGAGCACATCCCACGCC 60.821 66.667 0.00 0.00 0.00 5.68
1589 2090 4.560128 CTCTCTCTCTACTGATCCTCTCG 58.440 52.174 0.00 0.00 0.00 4.04
1669 2170 8.906867 ACTGTATCATGTAATTTCAGAATTGGG 58.093 33.333 0.00 0.00 36.22 4.12
1739 2240 4.639334 AGCCAGTGATGCTTGTATATGAG 58.361 43.478 0.00 0.00 34.87 2.90
1748 2250 6.988580 TGATGCTTGTATATGAGAAGTTGAGG 59.011 38.462 0.00 0.00 30.96 3.86
1845 2459 3.129109 CTCACTGTATATGCAGGCTGTG 58.871 50.000 22.64 13.49 40.59 3.66
1869 2483 1.028868 GCGAAGAGGCATTGGAGCTT 61.029 55.000 0.00 0.00 34.17 3.74
1902 2516 0.680618 TCCTTGGCCGTAACTTCGAA 59.319 50.000 0.00 0.00 0.00 3.71
2265 2879 1.761784 CTCAAGCAGTCTAGCCCTGAT 59.238 52.381 11.98 4.24 34.23 2.90
2280 2894 1.340308 CCTGATGGGCTTGATGTCACA 60.340 52.381 0.00 0.00 0.00 3.58
2412 3026 1.407437 GCAATCGGGATGTCTCACCTT 60.407 52.381 0.00 0.00 0.00 3.50
2625 3239 0.179936 CAGATGAACTCAGGAGGCCC 59.820 60.000 0.00 0.00 0.00 5.80
2722 3431 1.127567 TTGACTGCTGGTGCCTAGGT 61.128 55.000 11.31 0.00 38.71 3.08
2800 3510 4.980573 TGTTTAGATTGGTTGCCTAGTGT 58.019 39.130 0.00 0.00 0.00 3.55
2809 3527 3.644265 TGGTTGCCTAGTGTCTGAACTAA 59.356 43.478 0.00 0.00 32.35 2.24
2811 3529 4.691216 GGTTGCCTAGTGTCTGAACTAAAG 59.309 45.833 0.00 0.00 32.35 1.85
2824 3542 4.154942 TGAACTAAAGTACTCCCTCCGTT 58.845 43.478 0.00 0.00 0.00 4.44
2825 3543 4.219288 TGAACTAAAGTACTCCCTCCGTTC 59.781 45.833 0.00 4.93 0.00 3.95
2826 3544 3.095332 ACTAAAGTACTCCCTCCGTTCC 58.905 50.000 0.00 0.00 0.00 3.62
2827 3545 2.019807 AAAGTACTCCCTCCGTTCCA 57.980 50.000 0.00 0.00 0.00 3.53
2828 3546 2.249309 AAGTACTCCCTCCGTTCCAT 57.751 50.000 0.00 0.00 0.00 3.41
2830 3548 3.393426 AGTACTCCCTCCGTTCCATAA 57.607 47.619 0.00 0.00 0.00 1.90
2832 3550 4.296056 AGTACTCCCTCCGTTCCATAATT 58.704 43.478 0.00 0.00 0.00 1.40
2841 3559 5.008019 CCTCCGTTCCATAATTCTTGTCATG 59.992 44.000 0.00 0.00 0.00 3.07
2842 3560 4.335315 TCCGTTCCATAATTCTTGTCATGC 59.665 41.667 0.00 0.00 0.00 4.06
2847 3565 7.276218 CGTTCCATAATTCTTGTCATGCAAATT 59.724 33.333 0.00 0.00 36.53 1.82
2848 3566 8.938906 GTTCCATAATTCTTGTCATGCAAATTT 58.061 29.630 0.00 0.00 36.53 1.82
2849 3567 8.481974 TCCATAATTCTTGTCATGCAAATTTG 57.518 30.769 14.03 14.03 36.53 2.32
2850 3568 8.312564 TCCATAATTCTTGTCATGCAAATTTGA 58.687 29.630 22.31 7.50 36.53 2.69
2851 3569 8.600625 CCATAATTCTTGTCATGCAAATTTGAG 58.399 33.333 22.31 10.39 36.53 3.02
2852 3570 6.476243 AATTCTTGTCATGCAAATTTGAGC 57.524 33.333 22.31 7.95 36.53 4.26
2853 3571 4.859304 TCTTGTCATGCAAATTTGAGCT 57.141 36.364 22.31 2.21 36.53 4.09
2856 3574 6.747125 TCTTGTCATGCAAATTTGAGCTAAA 58.253 32.000 22.31 7.28 36.53 1.85
2857 3575 7.208777 TCTTGTCATGCAAATTTGAGCTAAAA 58.791 30.769 22.31 0.00 36.53 1.52
2858 3576 6.768029 TGTCATGCAAATTTGAGCTAAAAC 57.232 33.333 22.31 9.68 0.00 2.43
2859 3577 5.695816 TGTCATGCAAATTTGAGCTAAAACC 59.304 36.000 22.31 1.28 0.00 3.27
2860 3578 5.695816 GTCATGCAAATTTGAGCTAAAACCA 59.304 36.000 22.31 7.05 0.00 3.67
2861 3579 5.695816 TCATGCAAATTTGAGCTAAAACCAC 59.304 36.000 22.31 0.05 0.00 4.16
2862 3580 4.047822 TGCAAATTTGAGCTAAAACCACG 58.952 39.130 22.31 0.00 0.00 4.94
2864 3582 4.148174 GCAAATTTGAGCTAAAACCACGAC 59.852 41.667 22.31 0.00 0.00 4.34
2865 3583 5.277825 CAAATTTGAGCTAAAACCACGACA 58.722 37.500 13.08 0.00 0.00 4.35
2866 3584 5.508200 AATTTGAGCTAAAACCACGACAA 57.492 34.783 0.00 0.00 0.00 3.18
2867 3585 5.705609 ATTTGAGCTAAAACCACGACAAT 57.294 34.783 0.00 0.00 0.00 2.71
2868 3586 6.811253 ATTTGAGCTAAAACCACGACAATA 57.189 33.333 0.00 0.00 0.00 1.90
2870 3588 6.811253 TTGAGCTAAAACCACGACAATAAT 57.189 33.333 0.00 0.00 0.00 1.28
2871 3589 6.811253 TGAGCTAAAACCACGACAATAATT 57.189 33.333 0.00 0.00 0.00 1.40
2872 3590 7.908827 TGAGCTAAAACCACGACAATAATTA 57.091 32.000 0.00 0.00 0.00 1.40
2873 3591 8.500753 TGAGCTAAAACCACGACAATAATTAT 57.499 30.769 0.00 0.00 0.00 1.28
2875 3593 7.703328 AGCTAAAACCACGACAATAATTATGG 58.297 34.615 0.00 0.00 0.00 2.74
2879 3716 5.728351 ACCACGACAATAATTATGGAACG 57.272 39.130 6.86 12.83 0.00 3.95
2907 3744 9.892130 AGGGAGTACTAAATTTCTTGAGTAATG 57.108 33.333 0.00 0.00 31.35 1.90
2922 3759 8.615211 TCTTGAGTAATGCATCACATACAATTC 58.385 33.333 2.05 0.00 38.34 2.17
2930 3767 5.008316 TGCATCACATACAATTCTGCTCATC 59.992 40.000 0.00 0.00 0.00 2.92
2937 3774 6.435277 ACATACAATTCTGCTCATCCAAGTTT 59.565 34.615 0.00 0.00 0.00 2.66
2967 3804 3.859443 TGTTTGGTGGCATCATAAATGC 58.141 40.909 0.00 1.40 43.85 3.56
3013 3850 7.881775 ATGATCACAAATAGGAAGTAAACCC 57.118 36.000 0.00 0.00 0.00 4.11
3034 3871 4.039124 CCCTATGGTGCCAATTGAAATACC 59.961 45.833 7.12 9.76 0.00 2.73
3039 3876 2.163412 GTGCCAATTGAAATACCGAGCA 59.837 45.455 7.12 1.38 0.00 4.26
3083 3920 9.774071 TTATCATCATCCCAGTCATCTTATCTA 57.226 33.333 0.00 0.00 0.00 1.98
3152 3995 7.345653 TCACTTCATAGAATATTCAGGACCACT 59.654 37.037 17.56 0.00 0.00 4.00
3200 4043 6.245408 ACACAAACAGCAAAATCCTCCTATA 58.755 36.000 0.00 0.00 0.00 1.31
3204 4047 9.125026 ACAAACAGCAAAATCCTCCTATATTAG 57.875 33.333 0.00 0.00 0.00 1.73
3205 4048 9.125026 CAAACAGCAAAATCCTCCTATATTAGT 57.875 33.333 0.00 0.00 0.00 2.24
3217 4060 9.463902 TCCTCCTATATTAGTAGTATTCAGCAC 57.536 37.037 0.00 0.00 0.00 4.40
3218 4061 8.688151 CCTCCTATATTAGTAGTATTCAGCACC 58.312 40.741 0.00 0.00 0.00 5.01
3219 4062 9.244292 CTCCTATATTAGTAGTATTCAGCACCA 57.756 37.037 0.00 0.00 0.00 4.17
3220 4063 9.021807 TCCTATATTAGTAGTATTCAGCACCAC 57.978 37.037 0.00 0.00 0.00 4.16
3221 4064 9.026121 CCTATATTAGTAGTATTCAGCACCACT 57.974 37.037 0.00 0.00 0.00 4.00
3224 4067 4.891992 AGTAGTATTCAGCACCACTTGT 57.108 40.909 0.00 0.00 0.00 3.16
3225 4068 5.228945 AGTAGTATTCAGCACCACTTGTT 57.771 39.130 0.00 0.00 0.00 2.83
3226 4069 5.621193 AGTAGTATTCAGCACCACTTGTTT 58.379 37.500 0.00 0.00 0.00 2.83
3227 4070 6.062095 AGTAGTATTCAGCACCACTTGTTTT 58.938 36.000 0.00 0.00 0.00 2.43
3228 4071 5.438761 AGTATTCAGCACCACTTGTTTTC 57.561 39.130 0.00 0.00 0.00 2.29
3229 4072 5.133221 AGTATTCAGCACCACTTGTTTTCT 58.867 37.500 0.00 0.00 0.00 2.52
3230 4073 5.594317 AGTATTCAGCACCACTTGTTTTCTT 59.406 36.000 0.00 0.00 0.00 2.52
3231 4074 4.370364 TTCAGCACCACTTGTTTTCTTC 57.630 40.909 0.00 0.00 0.00 2.87
3232 4075 3.351740 TCAGCACCACTTGTTTTCTTCA 58.648 40.909 0.00 0.00 0.00 3.02
3233 4076 3.953612 TCAGCACCACTTGTTTTCTTCAT 59.046 39.130 0.00 0.00 0.00 2.57
3234 4077 5.129634 TCAGCACCACTTGTTTTCTTCATA 58.870 37.500 0.00 0.00 0.00 2.15
3235 4078 5.239306 TCAGCACCACTTGTTTTCTTCATAG 59.761 40.000 0.00 0.00 0.00 2.23
3236 4079 5.239306 CAGCACCACTTGTTTTCTTCATAGA 59.761 40.000 0.00 0.00 0.00 1.98
3237 4080 5.471456 AGCACCACTTGTTTTCTTCATAGAG 59.529 40.000 0.00 0.00 0.00 2.43
3238 4081 5.239525 GCACCACTTGTTTTCTTCATAGAGT 59.760 40.000 0.00 0.00 0.00 3.24
3239 4082 6.426937 GCACCACTTGTTTTCTTCATAGAGTA 59.573 38.462 0.00 0.00 0.00 2.59
3240 4083 7.119846 GCACCACTTGTTTTCTTCATAGAGTAT 59.880 37.037 0.00 0.00 0.00 2.12
3241 4084 9.003658 CACCACTTGTTTTCTTCATAGAGTATT 57.996 33.333 0.00 0.00 0.00 1.89
3242 4085 9.220767 ACCACTTGTTTTCTTCATAGAGTATTC 57.779 33.333 0.00 0.00 0.00 1.75
3243 4086 9.219603 CCACTTGTTTTCTTCATAGAGTATTCA 57.780 33.333 0.00 0.00 0.00 2.57
3248 4091 9.996554 TGTTTTCTTCATAGAGTATTCAGTTCA 57.003 29.630 0.00 0.00 0.00 3.18
3250 4093 8.709386 TTTCTTCATAGAGTATTCAGTTCAGC 57.291 34.615 0.00 0.00 0.00 4.26
3251 4094 6.810911 TCTTCATAGAGTATTCAGTTCAGCC 58.189 40.000 0.00 0.00 0.00 4.85
3252 4095 5.537300 TCATAGAGTATTCAGTTCAGCCC 57.463 43.478 0.00 0.00 0.00 5.19
3253 4096 4.345257 TCATAGAGTATTCAGTTCAGCCCC 59.655 45.833 0.00 0.00 0.00 5.80
3254 4097 2.551270 AGAGTATTCAGTTCAGCCCCA 58.449 47.619 0.00 0.00 0.00 4.96
3255 4098 2.237392 AGAGTATTCAGTTCAGCCCCAC 59.763 50.000 0.00 0.00 0.00 4.61
3256 4099 2.237392 GAGTATTCAGTTCAGCCCCACT 59.763 50.000 0.00 0.00 0.00 4.00
3257 4100 2.644798 AGTATTCAGTTCAGCCCCACTT 59.355 45.455 0.00 0.00 0.00 3.16
3258 4101 1.915141 ATTCAGTTCAGCCCCACTTG 58.085 50.000 0.00 0.00 0.00 3.16
3259 4102 0.550914 TTCAGTTCAGCCCCACTTGT 59.449 50.000 0.00 0.00 0.00 3.16
3260 4103 0.550914 TCAGTTCAGCCCCACTTGTT 59.449 50.000 0.00 0.00 0.00 2.83
3261 4104 1.064017 TCAGTTCAGCCCCACTTGTTT 60.064 47.619 0.00 0.00 0.00 2.83
3262 4105 1.756538 CAGTTCAGCCCCACTTGTTTT 59.243 47.619 0.00 0.00 0.00 2.43
3288 4131 4.532126 TCATAAGAAGAAACTGCCTCTCCA 59.468 41.667 0.00 0.00 0.00 3.86
3293 4137 5.143369 AGAAGAAACTGCCTCTCCATTTTT 58.857 37.500 0.00 0.00 0.00 1.94
3369 4261 7.946207 TGTTGACTCATAGGATCTCATTACTC 58.054 38.462 0.00 0.00 0.00 2.59
3385 4277 4.993705 TTACTCAAATTGACCCACCTCT 57.006 40.909 0.00 0.00 0.00 3.69
3390 4282 3.888930 TCAAATTGACCCACCTCTTGTTC 59.111 43.478 0.00 0.00 0.00 3.18
3391 4283 3.884037 AATTGACCCACCTCTTGTTCT 57.116 42.857 0.00 0.00 0.00 3.01
3398 4290 3.262420 CCCACCTCTTGTTCTTGTATCG 58.738 50.000 0.00 0.00 0.00 2.92
3412 4304 7.544566 TGTTCTTGTATCGAGTTGATAAACCTC 59.455 37.037 1.38 0.00 41.17 3.85
3448 4340 9.113838 ACAGTTGACATAGAACCAATCATAATC 57.886 33.333 0.00 0.00 0.00 1.75
3489 4381 8.405531 TGTATGCCTTTTTATGCAGTTATTCTC 58.594 33.333 0.00 0.00 41.46 2.87
3493 4388 7.598493 TGCCTTTTTATGCAGTTATTCTCAAAC 59.402 33.333 0.00 0.00 32.77 2.93
3496 4391 9.643693 CTTTTTATGCAGTTATTCTCAAACCAT 57.356 29.630 0.00 0.00 0.00 3.55
3508 4403 5.186996 TCTCAAACCATTTTTGCTCTGTC 57.813 39.130 0.00 0.00 0.00 3.51
3526 4421 7.039714 TGCTCTGTCATTAACCGTATCAGATAT 60.040 37.037 0.00 0.00 31.62 1.63
3588 4485 4.253685 ACGTTTGGATCTTACATGACCTG 58.746 43.478 0.00 0.00 0.00 4.00
3618 4516 8.592998 CATATACTTGTTTACGTCTTCAACCTC 58.407 37.037 0.00 0.00 0.00 3.85
3668 4567 7.717436 TGTATCTAACATGAAAACAACCACTCA 59.283 33.333 0.00 0.00 31.43 3.41
3685 4586 9.132521 CAACCACTCATTTAATCTTGATTTGTC 57.867 33.333 0.95 0.00 0.00 3.18
3802 4704 1.211969 GCATTGTCAGGCTGCACAG 59.788 57.895 10.34 7.39 35.96 3.66
3840 4743 3.499537 TGCTAATGTTTGTGCTCTGACTG 59.500 43.478 0.00 0.00 0.00 3.51
3903 4806 2.043953 GCAAGGGACCCCATCACC 60.044 66.667 7.00 0.00 38.92 4.02
3959 4862 1.079819 CCGAAGCCGAGCTGAAGAA 60.080 57.895 0.00 0.00 39.62 2.52
4122 5025 1.003718 CGAGGACCCCAAGTTCACC 60.004 63.158 0.00 0.00 0.00 4.02
4178 5081 0.875059 AAGCAGCTTGTTTACGCCTC 59.125 50.000 6.93 0.00 0.00 4.70
4179 5082 0.035458 AGCAGCTTGTTTACGCCTCT 59.965 50.000 0.00 0.00 0.00 3.69
4208 5111 5.607592 TCATGTACTACCTCTCTAGCTACCT 59.392 44.000 0.00 0.00 0.00 3.08
4232 5138 1.287425 CTAGTTTTGTCGATCCCGCC 58.713 55.000 0.00 0.00 35.37 6.13
4260 5166 6.564125 CGATTTCTTGTGTTGTTAGAGGTCAC 60.564 42.308 0.00 0.00 0.00 3.67
4290 5196 0.171903 AATTCATTGCTCGCTGTGCC 59.828 50.000 0.00 0.00 0.00 5.01
4481 5389 2.840651 TGGGAGATTCCTTTCCTCTGTC 59.159 50.000 0.00 0.00 36.57 3.51
4482 5390 2.171659 GGGAGATTCCTTTCCTCTGTCC 59.828 54.545 0.00 0.00 36.57 4.02
4572 5482 8.352942 AGGTATCAAAACTCTTCACATTGAAAC 58.647 33.333 0.00 0.00 35.73 2.78
4627 5537 1.112113 TCCGAGACCCTACATCTTGC 58.888 55.000 0.00 0.00 0.00 4.01
4647 5580 1.078637 GCGGGTAACAAGAGGGACC 60.079 63.158 0.00 0.00 39.74 4.46
4741 5779 0.979665 TCCTCTCCTTGTGCCTGAAG 59.020 55.000 0.00 0.00 0.00 3.02
4757 5795 4.017126 CCTGAAGGAGAAAATACCCAACC 58.983 47.826 0.00 0.00 37.39 3.77
4775 5825 2.699954 ACCGATTGTGCTAGAAAGGTG 58.300 47.619 0.00 0.00 0.00 4.00
4813 5863 1.357420 TCCAACATGCCATTAGGGTGT 59.643 47.619 0.00 0.00 39.65 4.16
4834 5884 6.058183 GTGTGCAAATATCCCTAACTGATCT 58.942 40.000 0.00 0.00 0.00 2.75
4941 6265 1.340017 CCATCGCCTTCCTTGGAGAAA 60.340 52.381 0.00 0.00 39.26 2.52
4946 6270 3.263425 TCGCCTTCCTTGGAGAAAACTAT 59.737 43.478 0.00 0.00 33.10 2.12
4949 6273 5.048013 CGCCTTCCTTGGAGAAAACTATTTT 60.048 40.000 0.00 0.00 35.12 1.82
4953 6277 7.201911 CCTTCCTTGGAGAAAACTATTTTGTGT 60.202 37.037 0.00 0.00 31.94 3.72
5042 6366 7.348274 AGTGAGGGATAAGATGGTAAGAATCAA 59.652 37.037 0.00 0.00 0.00 2.57
5049 6373 4.265073 AGATGGTAAGAATCAAGGTGTGC 58.735 43.478 0.00 0.00 0.00 4.57
5121 6449 1.325476 GGAAAAGGATGGGCCAGCAG 61.325 60.000 25.00 0.00 40.02 4.24
5136 6464 0.767375 AGCAGGCTGTTGAGAGGAAA 59.233 50.000 17.16 0.00 0.00 3.13
5137 6465 1.163554 GCAGGCTGTTGAGAGGAAAG 58.836 55.000 17.16 0.00 0.00 2.62
5138 6466 1.544314 GCAGGCTGTTGAGAGGAAAGT 60.544 52.381 17.16 0.00 0.00 2.66
5140 6468 1.072965 AGGCTGTTGAGAGGAAAGTGG 59.927 52.381 0.00 0.00 0.00 4.00
5143 6471 3.214328 GCTGTTGAGAGGAAAGTGGAAA 58.786 45.455 0.00 0.00 0.00 3.13
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 1.006102 CACGGTATGGATCGAGGCC 60.006 63.158 0.00 0.00 0.00 5.19
1 2 0.039074 CTCACGGTATGGATCGAGGC 60.039 60.000 0.00 0.00 0.00 4.70
2 3 1.319541 ACTCACGGTATGGATCGAGG 58.680 55.000 0.00 0.00 0.00 4.63
3 4 4.563337 TTAACTCACGGTATGGATCGAG 57.437 45.455 0.00 0.00 0.00 4.04
4 5 4.440525 GGTTTAACTCACGGTATGGATCGA 60.441 45.833 0.00 0.00 0.00 3.59
5 6 3.800506 GGTTTAACTCACGGTATGGATCG 59.199 47.826 0.00 0.00 0.00 3.69
6 7 5.019785 AGGTTTAACTCACGGTATGGATC 57.980 43.478 0.00 0.00 0.00 3.36
7 8 5.431179 AAGGTTTAACTCACGGTATGGAT 57.569 39.130 0.00 0.00 0.00 3.41
8 9 4.895668 AAGGTTTAACTCACGGTATGGA 57.104 40.909 0.00 0.00 0.00 3.41
9 10 5.952526 AAAAGGTTTAACTCACGGTATGG 57.047 39.130 0.00 0.00 0.00 2.74
10 11 6.370718 AGCTAAAAGGTTTAACTCACGGTATG 59.629 38.462 0.00 0.00 0.00 2.39
11 12 6.370718 CAGCTAAAAGGTTTAACTCACGGTAT 59.629 38.462 0.00 0.00 0.00 2.73
12 13 5.697633 CAGCTAAAAGGTTTAACTCACGGTA 59.302 40.000 0.00 0.00 0.00 4.02
13 14 4.514066 CAGCTAAAAGGTTTAACTCACGGT 59.486 41.667 0.00 0.00 0.00 4.83
14 15 4.514066 ACAGCTAAAAGGTTTAACTCACGG 59.486 41.667 0.00 0.00 0.00 4.94
15 16 5.007332 ACACAGCTAAAAGGTTTAACTCACG 59.993 40.000 0.00 0.00 0.00 4.35
16 17 6.260271 AGACACAGCTAAAAGGTTTAACTCAC 59.740 38.462 0.00 0.00 0.00 3.51
17 18 6.354130 AGACACAGCTAAAAGGTTTAACTCA 58.646 36.000 0.00 0.00 0.00 3.41
18 19 6.482308 TGAGACACAGCTAAAAGGTTTAACTC 59.518 38.462 0.00 0.00 0.00 3.01
19 20 6.354130 TGAGACACAGCTAAAAGGTTTAACT 58.646 36.000 0.00 0.00 0.00 2.24
20 21 6.613755 TGAGACACAGCTAAAAGGTTTAAC 57.386 37.500 0.00 0.00 0.00 2.01
21 22 6.861065 CTGAGACACAGCTAAAAGGTTTAA 57.139 37.500 0.00 0.00 39.86 1.52
35 36 1.134995 GGATGCGATCACTGAGACACA 60.135 52.381 0.00 0.00 0.00 3.72
36 37 1.135915 AGGATGCGATCACTGAGACAC 59.864 52.381 0.00 0.00 0.00 3.67
37 38 1.406898 GAGGATGCGATCACTGAGACA 59.593 52.381 0.00 0.00 0.00 3.41
38 39 1.406898 TGAGGATGCGATCACTGAGAC 59.593 52.381 0.00 0.00 0.00 3.36
39 40 1.767759 TGAGGATGCGATCACTGAGA 58.232 50.000 0.00 0.00 0.00 3.27
40 41 2.159128 ACTTGAGGATGCGATCACTGAG 60.159 50.000 0.00 0.00 0.00 3.35
41 42 1.827344 ACTTGAGGATGCGATCACTGA 59.173 47.619 0.00 0.00 0.00 3.41
42 43 2.306341 ACTTGAGGATGCGATCACTG 57.694 50.000 0.00 0.00 0.00 3.66
43 44 3.291584 TCTACTTGAGGATGCGATCACT 58.708 45.455 0.00 0.00 0.00 3.41
44 45 3.717400 TCTACTTGAGGATGCGATCAC 57.283 47.619 0.00 0.00 0.00 3.06
45 46 4.944619 AATCTACTTGAGGATGCGATCA 57.055 40.909 0.00 0.00 0.00 2.92
46 47 5.755375 TCAAAATCTACTTGAGGATGCGATC 59.245 40.000 0.00 0.00 0.00 3.69
47 48 5.674525 TCAAAATCTACTTGAGGATGCGAT 58.325 37.500 0.00 0.00 0.00 4.58
48 49 5.084818 TCAAAATCTACTTGAGGATGCGA 57.915 39.130 0.00 0.00 0.00 5.10
49 50 5.122239 TGTTCAAAATCTACTTGAGGATGCG 59.878 40.000 0.00 0.00 34.41 4.73
50 51 6.500684 TGTTCAAAATCTACTTGAGGATGC 57.499 37.500 0.00 0.00 34.41 3.91
51 52 7.121759 ACCATGTTCAAAATCTACTTGAGGATG 59.878 37.037 0.00 0.00 34.41 3.51
52 53 7.177878 ACCATGTTCAAAATCTACTTGAGGAT 58.822 34.615 0.00 0.00 34.41 3.24
53 54 6.542821 ACCATGTTCAAAATCTACTTGAGGA 58.457 36.000 0.00 0.00 34.41 3.71
54 55 6.824305 ACCATGTTCAAAATCTACTTGAGG 57.176 37.500 0.00 0.00 34.41 3.86
55 56 8.783093 TGTTACCATGTTCAAAATCTACTTGAG 58.217 33.333 0.00 0.00 34.41 3.02
56 57 8.564574 GTGTTACCATGTTCAAAATCTACTTGA 58.435 33.333 0.00 0.00 0.00 3.02
57 58 7.807907 GGTGTTACCATGTTCAAAATCTACTTG 59.192 37.037 0.00 0.00 38.42 3.16
58 59 7.504238 TGGTGTTACCATGTTCAAAATCTACTT 59.496 33.333 0.00 0.00 44.79 2.24
59 60 7.001674 TGGTGTTACCATGTTCAAAATCTACT 58.998 34.615 0.00 0.00 44.79 2.57
60 61 7.209471 TGGTGTTACCATGTTCAAAATCTAC 57.791 36.000 0.00 0.00 44.79 2.59
75 76 4.013728 TGCCAAAGTGATATGGTGTTACC 58.986 43.478 0.00 0.00 39.00 2.85
76 77 5.356751 TGATGCCAAAGTGATATGGTGTTAC 59.643 40.000 0.00 0.00 39.00 2.50
77 78 5.504853 TGATGCCAAAGTGATATGGTGTTA 58.495 37.500 0.00 0.00 39.00 2.41
78 79 4.343231 TGATGCCAAAGTGATATGGTGTT 58.657 39.130 0.00 0.00 39.00 3.32
79 80 3.966979 TGATGCCAAAGTGATATGGTGT 58.033 40.909 0.00 0.00 39.00 4.16
80 81 4.987408 TTGATGCCAAAGTGATATGGTG 57.013 40.909 0.00 0.00 39.00 4.17
81 82 5.657745 TGATTTGATGCCAAAGTGATATGGT 59.342 36.000 0.00 0.00 44.53 3.55
82 83 5.981315 GTGATTTGATGCCAAAGTGATATGG 59.019 40.000 0.00 0.00 44.53 2.74
83 84 6.474427 GTGTGATTTGATGCCAAAGTGATATG 59.526 38.462 0.00 0.00 44.53 1.78
84 85 6.153170 TGTGTGATTTGATGCCAAAGTGATAT 59.847 34.615 0.00 0.00 44.53 1.63
85 86 5.476254 TGTGTGATTTGATGCCAAAGTGATA 59.524 36.000 0.00 0.00 44.53 2.15
86 87 4.281435 TGTGTGATTTGATGCCAAAGTGAT 59.719 37.500 0.00 0.00 44.53 3.06
87 88 3.635836 TGTGTGATTTGATGCCAAAGTGA 59.364 39.130 0.00 0.00 44.53 3.41
88 89 3.737266 GTGTGTGATTTGATGCCAAAGTG 59.263 43.478 0.00 0.00 44.53 3.16
89 90 3.384146 TGTGTGTGATTTGATGCCAAAGT 59.616 39.130 0.00 0.00 44.53 2.66
90 91 3.979948 TGTGTGTGATTTGATGCCAAAG 58.020 40.909 0.00 0.00 44.53 2.77
91 92 3.384146 ACTGTGTGTGATTTGATGCCAAA 59.616 39.130 0.00 0.00 45.28 3.28
92 93 2.957680 ACTGTGTGTGATTTGATGCCAA 59.042 40.909 0.00 0.00 0.00 4.52
93 94 2.585330 ACTGTGTGTGATTTGATGCCA 58.415 42.857 0.00 0.00 0.00 4.92
105 106 6.542370 AGCTATTGTAACTTTTCACTGTGTGT 59.458 34.615 7.79 0.81 34.79 3.72
106 107 6.959361 AGCTATTGTAACTTTTCACTGTGTG 58.041 36.000 7.79 0.00 34.45 3.82
107 108 7.568199 AAGCTATTGTAACTTTTCACTGTGT 57.432 32.000 7.79 0.00 0.00 3.72
108 109 9.599322 CTTAAGCTATTGTAACTTTTCACTGTG 57.401 33.333 0.17 0.17 0.00 3.66
109 110 9.555727 TCTTAAGCTATTGTAACTTTTCACTGT 57.444 29.630 0.00 0.00 0.00 3.55
111 112 9.998106 TCTCTTAAGCTATTGTAACTTTTCACT 57.002 29.630 0.00 0.00 0.00 3.41
116 117 8.391106 CGCATTCTCTTAAGCTATTGTAACTTT 58.609 33.333 0.00 0.00 0.00 2.66
117 118 7.549488 ACGCATTCTCTTAAGCTATTGTAACTT 59.451 33.333 0.00 0.00 0.00 2.66
118 119 7.042335 ACGCATTCTCTTAAGCTATTGTAACT 58.958 34.615 0.00 0.00 0.00 2.24
119 120 7.010183 TGACGCATTCTCTTAAGCTATTGTAAC 59.990 37.037 0.00 0.00 0.00 2.50
120 121 7.039270 TGACGCATTCTCTTAAGCTATTGTAA 58.961 34.615 0.00 0.00 0.00 2.41
121 122 6.569780 TGACGCATTCTCTTAAGCTATTGTA 58.430 36.000 0.00 0.00 0.00 2.41
122 123 5.419542 TGACGCATTCTCTTAAGCTATTGT 58.580 37.500 0.00 0.00 0.00 2.71
123 124 5.973651 TGACGCATTCTCTTAAGCTATTG 57.026 39.130 0.00 0.00 0.00 1.90
124 125 6.647067 GGTATGACGCATTCTCTTAAGCTATT 59.353 38.462 0.00 0.00 0.00 1.73
125 126 6.159988 GGTATGACGCATTCTCTTAAGCTAT 58.840 40.000 0.00 0.00 0.00 2.97
126 127 5.529791 GGTATGACGCATTCTCTTAAGCTA 58.470 41.667 0.00 0.00 0.00 3.32
127 128 4.372656 GGTATGACGCATTCTCTTAAGCT 58.627 43.478 0.00 0.00 0.00 3.74
128 129 3.182572 CGGTATGACGCATTCTCTTAAGC 59.817 47.826 0.00 0.00 0.00 3.09
129 130 4.441415 GTCGGTATGACGCATTCTCTTAAG 59.559 45.833 0.00 0.00 37.96 1.85
130 131 4.357142 GTCGGTATGACGCATTCTCTTAA 58.643 43.478 0.00 0.00 37.96 1.85
131 132 3.961182 GTCGGTATGACGCATTCTCTTA 58.039 45.455 0.00 0.00 37.96 2.10
132 133 2.810650 GTCGGTATGACGCATTCTCTT 58.189 47.619 0.00 0.00 37.96 2.85
133 134 2.493713 GTCGGTATGACGCATTCTCT 57.506 50.000 0.00 0.00 37.96 3.10
143 144 2.696989 TCGTACTCCAGTCGGTATGA 57.303 50.000 0.00 0.00 33.30 2.15
144 145 3.770263 TTTCGTACTCCAGTCGGTATG 57.230 47.619 0.00 0.00 0.00 2.39
145 146 4.012374 TCTTTTCGTACTCCAGTCGGTAT 58.988 43.478 0.00 0.00 0.00 2.73
146 147 3.411446 TCTTTTCGTACTCCAGTCGGTA 58.589 45.455 0.00 0.00 0.00 4.02
147 148 2.233271 TCTTTTCGTACTCCAGTCGGT 58.767 47.619 0.00 0.00 0.00 4.69
148 149 2.985139 GTTCTTTTCGTACTCCAGTCGG 59.015 50.000 0.00 0.00 0.00 4.79
149 150 3.635331 TGTTCTTTTCGTACTCCAGTCG 58.365 45.455 0.00 0.00 0.00 4.18
150 151 4.618965 ACTGTTCTTTTCGTACTCCAGTC 58.381 43.478 0.00 0.00 0.00 3.51
151 152 4.501058 GGACTGTTCTTTTCGTACTCCAGT 60.501 45.833 0.00 0.00 34.82 4.00
152 153 3.988517 GGACTGTTCTTTTCGTACTCCAG 59.011 47.826 0.00 0.00 0.00 3.86
153 154 3.385433 TGGACTGTTCTTTTCGTACTCCA 59.615 43.478 0.00 0.00 0.00 3.86
154 155 3.986277 TGGACTGTTCTTTTCGTACTCC 58.014 45.455 0.00 0.00 0.00 3.85
155 156 5.978934 TTTGGACTGTTCTTTTCGTACTC 57.021 39.130 0.00 0.00 0.00 2.59
156 157 5.644636 TGTTTTGGACTGTTCTTTTCGTACT 59.355 36.000 0.00 0.00 0.00 2.73
157 158 5.871539 TGTTTTGGACTGTTCTTTTCGTAC 58.128 37.500 0.00 0.00 0.00 3.67
158 159 6.687081 ATGTTTTGGACTGTTCTTTTCGTA 57.313 33.333 0.00 0.00 0.00 3.43
159 160 5.576447 ATGTTTTGGACTGTTCTTTTCGT 57.424 34.783 0.00 0.00 0.00 3.85
160 161 6.237808 CCAAATGTTTTGGACTGTTCTTTTCG 60.238 38.462 12.64 0.00 42.06 3.46
161 162 6.816140 TCCAAATGTTTTGGACTGTTCTTTTC 59.184 34.615 15.85 0.00 43.17 2.29
162 163 6.706295 TCCAAATGTTTTGGACTGTTCTTTT 58.294 32.000 15.85 0.00 43.17 2.27
163 164 6.293004 TCCAAATGTTTTGGACTGTTCTTT 57.707 33.333 15.85 0.00 43.17 2.52
164 165 5.930837 TCCAAATGTTTTGGACTGTTCTT 57.069 34.783 15.85 0.00 43.17 2.52
172 173 6.855763 ATCATAGCTTCCAAATGTTTTGGA 57.144 33.333 15.85 15.85 46.08 3.53
173 174 7.592533 CGATATCATAGCTTCCAAATGTTTTGG 59.407 37.037 11.90 11.90 40.87 3.28
174 175 8.344831 TCGATATCATAGCTTCCAAATGTTTTG 58.655 33.333 3.12 0.00 0.00 2.44
175 176 8.345565 GTCGATATCATAGCTTCCAAATGTTTT 58.654 33.333 3.12 0.00 0.00 2.43
176 177 7.716998 AGTCGATATCATAGCTTCCAAATGTTT 59.283 33.333 3.12 0.00 0.00 2.83
177 178 7.220030 AGTCGATATCATAGCTTCCAAATGTT 58.780 34.615 3.12 0.00 0.00 2.71
178 179 6.763355 AGTCGATATCATAGCTTCCAAATGT 58.237 36.000 3.12 0.00 0.00 2.71
179 180 7.172190 ACAAGTCGATATCATAGCTTCCAAATG 59.828 37.037 3.12 0.00 0.00 2.32
180 181 7.220030 ACAAGTCGATATCATAGCTTCCAAAT 58.780 34.615 3.12 0.00 0.00 2.32
181 182 6.582636 ACAAGTCGATATCATAGCTTCCAAA 58.417 36.000 3.12 0.00 0.00 3.28
182 183 6.161855 ACAAGTCGATATCATAGCTTCCAA 57.838 37.500 3.12 0.00 0.00 3.53
183 184 5.791336 ACAAGTCGATATCATAGCTTCCA 57.209 39.130 3.12 0.00 0.00 3.53
184 185 6.451393 AGAACAAGTCGATATCATAGCTTCC 58.549 40.000 3.12 0.00 0.00 3.46
185 186 6.304445 CGAGAACAAGTCGATATCATAGCTTC 59.696 42.308 3.12 0.00 39.92 3.86
186 187 6.146216 CGAGAACAAGTCGATATCATAGCTT 58.854 40.000 3.12 0.00 39.92 3.74
187 188 5.239744 ACGAGAACAAGTCGATATCATAGCT 59.760 40.000 3.12 0.00 39.92 3.32
188 189 5.453648 ACGAGAACAAGTCGATATCATAGC 58.546 41.667 3.12 0.00 39.92 2.97
189 190 6.659776 TGACGAGAACAAGTCGATATCATAG 58.340 40.000 3.12 0.00 39.92 2.23
190 191 6.613755 TGACGAGAACAAGTCGATATCATA 57.386 37.500 3.12 0.00 39.92 2.15
191 192 5.500645 TGACGAGAACAAGTCGATATCAT 57.499 39.130 3.12 0.00 39.92 2.45
192 193 4.957759 TGACGAGAACAAGTCGATATCA 57.042 40.909 3.12 0.00 39.92 2.15
193 194 5.114273 CGAATGACGAGAACAAGTCGATATC 59.886 44.000 0.00 0.00 45.77 1.63
194 195 4.970611 CGAATGACGAGAACAAGTCGATAT 59.029 41.667 0.00 0.00 45.77 1.63
195 196 4.340263 CGAATGACGAGAACAAGTCGATA 58.660 43.478 0.00 0.00 45.77 2.92
196 197 3.172050 CGAATGACGAGAACAAGTCGAT 58.828 45.455 0.00 0.00 45.77 3.59
197 198 2.581637 CGAATGACGAGAACAAGTCGA 58.418 47.619 0.00 0.00 45.77 4.20
198 199 1.057847 GCGAATGACGAGAACAAGTCG 59.942 52.381 0.00 0.00 45.77 4.18
199 200 2.329379 AGCGAATGACGAGAACAAGTC 58.671 47.619 0.00 0.00 45.77 3.01
200 201 2.029828 AGAGCGAATGACGAGAACAAGT 60.030 45.455 0.00 0.00 45.77 3.16
201 202 2.596419 GAGAGCGAATGACGAGAACAAG 59.404 50.000 0.00 0.00 45.77 3.16
202 203 2.229062 AGAGAGCGAATGACGAGAACAA 59.771 45.455 0.00 0.00 45.77 2.83
203 204 1.813178 AGAGAGCGAATGACGAGAACA 59.187 47.619 0.00 0.00 45.77 3.18
204 205 2.553079 AGAGAGCGAATGACGAGAAC 57.447 50.000 0.00 0.00 45.77 3.01
205 206 2.032302 GCTAGAGAGCGAATGACGAGAA 59.968 50.000 0.00 0.00 45.77 2.87
226 227 2.005451 CTGGAGTCTTTTGATGGCTCG 58.995 52.381 0.00 0.00 0.00 5.03
233 234 0.110486 GCCCACCTGGAGTCTTTTGA 59.890 55.000 0.00 0.00 37.39 2.69
234 235 1.237285 CGCCCACCTGGAGTCTTTTG 61.237 60.000 0.00 0.00 37.39 2.44
235 236 1.073199 CGCCCACCTGGAGTCTTTT 59.927 57.895 0.00 0.00 37.39 2.27
240 241 4.974438 TTCCCGCCCACCTGGAGT 62.974 66.667 0.00 0.00 37.39 3.85
242 243 4.974438 AGTTCCCGCCCACCTGGA 62.974 66.667 0.00 0.00 37.39 3.86
243 244 3.920093 GAAGTTCCCGCCCACCTGG 62.920 68.421 0.00 0.00 37.09 4.45
245 246 4.016706 CGAAGTTCCCGCCCACCT 62.017 66.667 0.00 0.00 0.00 4.00
252 253 4.675029 ACGGTGCCGAAGTTCCCG 62.675 66.667 18.16 14.43 44.06 5.14
261 262 1.924524 CATAGTTACAAGACGGTGCCG 59.075 52.381 9.29 9.29 46.03 5.69
263 264 2.093783 GTGCATAGTTACAAGACGGTGC 59.906 50.000 0.00 0.00 36.22 5.01
264 265 3.322369 TGTGCATAGTTACAAGACGGTG 58.678 45.455 0.00 0.00 0.00 4.94
268 269 8.331022 CAATCATACTGTGCATAGTTACAAGAC 58.669 37.037 21.82 0.00 32.19 3.01
270 271 7.128331 GCAATCATACTGTGCATAGTTACAAG 58.872 38.462 21.82 8.93 38.19 3.16
273 274 5.333339 CCGCAATCATACTGTGCATAGTTAC 60.333 44.000 21.82 0.00 38.19 2.50
274 275 4.749598 CCGCAATCATACTGTGCATAGTTA 59.250 41.667 21.82 8.28 38.19 2.24
275 276 3.561310 CCGCAATCATACTGTGCATAGTT 59.439 43.478 21.82 6.92 38.19 2.24
276 277 3.133691 CCGCAATCATACTGTGCATAGT 58.866 45.455 20.48 20.48 38.19 2.12
277 278 2.096069 GCCGCAATCATACTGTGCATAG 60.096 50.000 9.17 9.17 38.19 2.23
278 279 1.872952 GCCGCAATCATACTGTGCATA 59.127 47.619 0.00 0.00 38.19 3.14
279 280 0.664761 GCCGCAATCATACTGTGCAT 59.335 50.000 0.00 0.00 38.19 3.96
291 292 1.529948 CATGGATGGAGGCCGCAAT 60.530 57.895 9.31 1.04 0.00 3.56
322 331 5.938125 GCTAATTCAGGTGGTAGTTGAAAGA 59.062 40.000 0.00 0.00 34.80 2.52
329 338 3.450904 TGAGGCTAATTCAGGTGGTAGT 58.549 45.455 0.00 0.00 0.00 2.73
332 341 2.237392 GACTGAGGCTAATTCAGGTGGT 59.763 50.000 6.46 0.00 44.96 4.16
357 366 1.468520 TCAAAAGCTACTTCGGCATGC 59.531 47.619 9.90 9.90 0.00 4.06
363 372 7.530861 GTGTTTCTATGTTCAAAAGCTACTTCG 59.469 37.037 0.00 0.00 0.00 3.79
366 375 6.770785 TGGTGTTTCTATGTTCAAAAGCTACT 59.229 34.615 0.00 0.00 0.00 2.57
382 391 3.320826 GGCAAGGTAAACATGGTGTTTCT 59.679 43.478 10.97 1.94 46.61 2.52
383 392 3.068873 TGGCAAGGTAAACATGGTGTTTC 59.931 43.478 10.97 4.51 46.61 2.78
384 393 9.475170 TTTGATGGCAAGGTAAACATGGTGTTT 62.475 37.037 12.13 12.13 42.87 2.83
389 398 4.533919 TTTGATGGCAAGGTAAACATGG 57.466 40.909 0.00 0.00 35.04 3.66
393 402 4.165779 CGTGATTTGATGGCAAGGTAAAC 58.834 43.478 0.00 0.00 35.04 2.01
398 407 1.733389 GCACGTGATTTGATGGCAAGG 60.733 52.381 22.23 0.00 35.04 3.61
399 408 1.068402 TGCACGTGATTTGATGGCAAG 60.068 47.619 22.23 0.00 35.04 4.01
415 424 2.724174 GCCATTGAAACGTTTACTGCAC 59.276 45.455 14.65 0.55 0.00 4.57
416 425 2.359214 TGCCATTGAAACGTTTACTGCA 59.641 40.909 14.65 14.86 0.00 4.41
419 428 6.205853 TCAGTTATGCCATTGAAACGTTTACT 59.794 34.615 14.65 6.73 0.00 2.24
425 434 4.266029 GCATTCAGTTATGCCATTGAAACG 59.734 41.667 0.00 0.00 44.01 3.60
441 451 2.552743 CCAGCTGGTATGATGCATTCAG 59.447 50.000 25.53 5.71 37.89 3.02
442 452 2.173143 TCCAGCTGGTATGATGCATTCA 59.827 45.455 31.58 5.17 36.12 2.57
443 453 2.812591 CTCCAGCTGGTATGATGCATTC 59.187 50.000 31.58 0.00 36.34 2.67
473 483 2.925724 TCCGAATGTGTTGGACTGTTT 58.074 42.857 0.00 0.00 0.00 2.83
485 495 2.930040 CAACATCGTAGCTTCCGAATGT 59.070 45.455 11.51 12.36 37.93 2.71
495 505 4.569801 GACAAGAAGTCAACATCGTAGC 57.430 45.455 0.00 0.00 46.77 3.58
511 521 6.708054 AGAGACAGGAATTTTGTGTAGACAAG 59.292 38.462 5.51 0.00 43.03 3.16
520 530 8.924511 TTTCATCTTAGAGACAGGAATTTTGT 57.075 30.769 0.00 0.00 0.00 2.83
536 547 4.659111 TCTCGGCGGTTATTTCATCTTA 57.341 40.909 7.21 0.00 0.00 2.10
541 552 2.754946 ACTTCTCGGCGGTTATTTCA 57.245 45.000 7.21 0.00 0.00 2.69
542 553 4.033702 CCTTTACTTCTCGGCGGTTATTTC 59.966 45.833 7.21 0.00 0.00 2.17
543 554 3.937079 CCTTTACTTCTCGGCGGTTATTT 59.063 43.478 7.21 0.00 0.00 1.40
544 555 3.528532 CCTTTACTTCTCGGCGGTTATT 58.471 45.455 7.21 0.00 0.00 1.40
545 556 2.159000 CCCTTTACTTCTCGGCGGTTAT 60.159 50.000 7.21 0.00 0.00 1.89
549 560 1.814169 GCCCTTTACTTCTCGGCGG 60.814 63.158 7.21 0.00 0.00 6.13
550 561 1.814169 GGCCCTTTACTTCTCGGCG 60.814 63.158 0.00 0.00 40.67 6.46
552 563 1.153429 CGGGCCCTTTACTTCTCGG 60.153 63.158 22.43 0.00 0.00 4.63
556 567 2.242797 TACGGCGGGCCCTTTACTTC 62.243 60.000 22.43 0.00 0.00 3.01
573 584 5.798434 GCCATACTTGGTTTTTCGTGATTAC 59.202 40.000 0.00 0.00 45.57 1.89
577 588 3.215151 TGCCATACTTGGTTTTTCGTGA 58.785 40.909 0.00 0.00 45.57 4.35
578 589 3.634568 TGCCATACTTGGTTTTTCGTG 57.365 42.857 0.00 0.00 45.57 4.35
579 590 4.864704 ATTGCCATACTTGGTTTTTCGT 57.135 36.364 0.00 0.00 45.57 3.85
592 622 8.696043 ACAGCAAGAGATTTATAATTGCCATA 57.304 30.769 14.24 0.00 45.67 2.74
595 625 7.363431 GGTACAGCAAGAGATTTATAATTGCC 58.637 38.462 14.24 3.05 45.67 4.52
600 630 8.313944 TGTAGGGTACAGCAAGAGATTTATAA 57.686 34.615 0.00 0.00 34.06 0.98
629 659 7.306866 GCAACCAACAAGCAAACGATTTTTATA 60.307 33.333 0.00 0.00 0.00 0.98
639 680 1.665169 CCAAGCAACCAACAAGCAAAC 59.335 47.619 0.00 0.00 0.00 2.93
640 681 1.277557 ACCAAGCAACCAACAAGCAAA 59.722 42.857 0.00 0.00 0.00 3.68
692 734 0.593128 CACCAAGAAAACAGAGCCCG 59.407 55.000 0.00 0.00 0.00 6.13
786 828 3.190849 CACGAGCCCACGATGCAG 61.191 66.667 0.00 0.00 37.03 4.41
826 868 1.076705 GATGGGGAGAGGGTTTGGC 60.077 63.158 0.00 0.00 0.00 4.52
868 912 2.040359 GGGAGGGGAGAAGGGGAG 60.040 72.222 0.00 0.00 0.00 4.30
872 1330 0.766288 GAGGATGGGAGGGGAGAAGG 60.766 65.000 0.00 0.00 0.00 3.46
890 1348 3.488363 GGAGGCGTATAAAGAGAGGAGA 58.512 50.000 0.00 0.00 0.00 3.71
979 1454 0.107410 TCGTCTCCTGCTCTCTCTCC 60.107 60.000 0.00 0.00 0.00 3.71
982 1457 1.603802 CATCTCGTCTCCTGCTCTCTC 59.396 57.143 0.00 0.00 0.00 3.20
983 1458 1.679139 CATCTCGTCTCCTGCTCTCT 58.321 55.000 0.00 0.00 0.00 3.10
985 1460 1.391157 GCCATCTCGTCTCCTGCTCT 61.391 60.000 0.00 0.00 0.00 4.09
986 1461 1.067250 GCCATCTCGTCTCCTGCTC 59.933 63.158 0.00 0.00 0.00 4.26
987 1462 2.780094 CGCCATCTCGTCTCCTGCT 61.780 63.158 0.00 0.00 0.00 4.24
988 1463 2.279120 CGCCATCTCGTCTCCTGC 60.279 66.667 0.00 0.00 0.00 4.85
989 1464 2.415010 CCGCCATCTCGTCTCCTG 59.585 66.667 0.00 0.00 0.00 3.86
991 1466 4.593864 GGCCGCCATCTCGTCTCC 62.594 72.222 3.91 0.00 0.00 3.71
992 1467 4.933064 CGGCCGCCATCTCGTCTC 62.933 72.222 14.67 0.00 0.00 3.36
1258 1740 5.126061 CGAACTTTTACACTACTAGGGGCTA 59.874 44.000 0.00 0.00 0.00 3.93
1265 1747 6.810182 GCCAAGATCGAACTTTTACACTACTA 59.190 38.462 5.03 0.00 0.00 1.82
1266 1748 5.638234 GCCAAGATCGAACTTTTACACTACT 59.362 40.000 5.03 0.00 0.00 2.57
1267 1749 5.638234 AGCCAAGATCGAACTTTTACACTAC 59.362 40.000 5.03 0.00 0.00 2.73
1268 1750 5.790593 AGCCAAGATCGAACTTTTACACTA 58.209 37.500 5.03 0.00 0.00 2.74
1278 1760 1.803289 GCCCAAGCCAAGATCGAAC 59.197 57.895 0.00 0.00 0.00 3.95
1350 1836 5.639506 GCAGCAAGTAAATCTAGAACACTCA 59.360 40.000 0.00 0.00 0.00 3.41
1370 1856 6.976088 TCTATCTAGAACTAAGTCATGCAGC 58.024 40.000 0.00 0.00 0.00 5.25
1474 1963 6.544928 TCTCAATACAAGATTCAGTAGGCA 57.455 37.500 0.00 0.00 0.00 4.75
1510 2002 2.046892 GCGTGGGATGTGCTCAGT 60.047 61.111 0.00 0.00 0.00 3.41
1528 2024 9.455847 CTTCAAATCCTAAAGTGAACTTTTCAG 57.544 33.333 13.30 6.30 43.07 3.02
1615 2116 9.988350 CATTTTAATTTGCTAACGAGTATCAGT 57.012 29.630 0.00 0.00 33.17 3.41
1653 2154 7.462571 AACAGTACCCCAATTCTGAAATTAC 57.537 36.000 0.00 0.00 33.27 1.89
1669 2170 8.905850 AGCTAGATCTAAGAACTAAACAGTACC 58.094 37.037 3.57 0.00 0.00 3.34
1739 2240 4.223032 TGATAACCTCAGGTCCTCAACTTC 59.777 45.833 0.00 0.00 33.12 3.01
1748 2250 9.178758 AGATTTAACAATTGATAACCTCAGGTC 57.821 33.333 13.59 0.00 33.12 3.85
1797 2299 8.406297 ACACTTTGAATTAGGAAAACAGAGAAC 58.594 33.333 0.00 0.00 0.00 3.01
1845 2459 1.421485 CAATGCCTCTTCGCGTGTC 59.579 57.895 5.77 0.00 0.00 3.67
1902 2516 1.154169 CATTTGCGCGCACATGTCT 60.154 52.632 38.72 17.26 31.59 3.41
2118 2732 1.767036 CATGGAACCACCCTGTCCA 59.233 57.895 0.00 0.00 38.00 4.02
2265 2879 1.608055 CAAGTGTGACATCAAGCCCA 58.392 50.000 0.00 0.00 0.00 5.36
2280 2894 1.247567 CGTCCCCAAAGAATGCAAGT 58.752 50.000 0.00 0.00 0.00 3.16
2412 3026 3.715315 TCTCGGGATCTGAAGTAGACCTA 59.285 47.826 0.00 0.00 38.49 3.08
2655 3269 7.038587 TGCCACTACTTAGAATAAAAGTGAGGA 60.039 37.037 10.84 3.72 37.71 3.71
2657 3271 7.819900 AGTGCCACTACTTAGAATAAAAGTGAG 59.180 37.037 0.00 5.40 37.71 3.51
2722 3431 9.295825 TCTTGCATTTTCTATTTCTCCAGTTAA 57.704 29.630 0.00 0.00 0.00 2.01
2800 3510 4.015084 CGGAGGGAGTACTTTAGTTCAGA 58.985 47.826 0.00 0.00 0.00 3.27
2809 3527 2.249309 ATGGAACGGAGGGAGTACTT 57.751 50.000 0.00 0.00 0.00 2.24
2811 3529 4.344390 AGAATTATGGAACGGAGGGAGTAC 59.656 45.833 0.00 0.00 0.00 2.73
2824 3542 8.312564 TCAAATTTGCATGACAAGAATTATGGA 58.687 29.630 13.54 0.00 40.06 3.41
2825 3543 8.481974 TCAAATTTGCATGACAAGAATTATGG 57.518 30.769 13.54 0.00 40.06 2.74
2826 3544 8.114290 GCTCAAATTTGCATGACAAGAATTATG 58.886 33.333 13.54 0.00 40.06 1.90
2827 3545 8.038944 AGCTCAAATTTGCATGACAAGAATTAT 58.961 29.630 13.54 0.00 40.06 1.28
2828 3546 7.380536 AGCTCAAATTTGCATGACAAGAATTA 58.619 30.769 13.54 0.00 40.06 1.40
2830 3548 5.790593 AGCTCAAATTTGCATGACAAGAAT 58.209 33.333 13.54 0.00 40.06 2.40
2832 3550 4.859304 AGCTCAAATTTGCATGACAAGA 57.141 36.364 13.54 0.00 40.06 3.02
2841 3559 4.148174 GTCGTGGTTTTAGCTCAAATTTGC 59.852 41.667 13.54 2.74 0.00 3.68
2842 3560 5.277825 TGTCGTGGTTTTAGCTCAAATTTG 58.722 37.500 12.15 12.15 0.00 2.32
2847 3565 6.811253 ATTATTGTCGTGGTTTTAGCTCAA 57.189 33.333 0.00 0.00 0.00 3.02
2848 3566 6.811253 AATTATTGTCGTGGTTTTAGCTCA 57.189 33.333 0.00 0.00 0.00 4.26
2849 3567 7.855904 CCATAATTATTGTCGTGGTTTTAGCTC 59.144 37.037 0.00 0.00 0.00 4.09
2850 3568 7.554835 TCCATAATTATTGTCGTGGTTTTAGCT 59.445 33.333 0.00 0.00 0.00 3.32
2851 3569 7.699566 TCCATAATTATTGTCGTGGTTTTAGC 58.300 34.615 0.00 0.00 0.00 3.09
2852 3570 9.498307 GTTCCATAATTATTGTCGTGGTTTTAG 57.502 33.333 0.00 0.00 0.00 1.85
2853 3571 8.176365 CGTTCCATAATTATTGTCGTGGTTTTA 58.824 33.333 0.00 0.00 0.00 1.52
2856 3574 5.065474 CCGTTCCATAATTATTGTCGTGGTT 59.935 40.000 0.00 0.00 0.00 3.67
2857 3575 4.573201 CCGTTCCATAATTATTGTCGTGGT 59.427 41.667 0.00 0.00 0.00 4.16
2858 3576 4.812091 TCCGTTCCATAATTATTGTCGTGG 59.188 41.667 0.00 0.00 0.00 4.94
2859 3577 5.050363 CCTCCGTTCCATAATTATTGTCGTG 60.050 44.000 0.00 0.00 0.00 4.35
2860 3578 5.054477 CCTCCGTTCCATAATTATTGTCGT 58.946 41.667 0.00 0.00 0.00 4.34
2861 3579 4.451096 CCCTCCGTTCCATAATTATTGTCG 59.549 45.833 0.00 3.30 0.00 4.35
2862 3580 5.617252 TCCCTCCGTTCCATAATTATTGTC 58.383 41.667 0.00 0.00 0.00 3.18
2864 3582 5.621193 ACTCCCTCCGTTCCATAATTATTG 58.379 41.667 0.00 0.00 0.00 1.90
2865 3583 5.906772 ACTCCCTCCGTTCCATAATTATT 57.093 39.130 0.00 0.00 0.00 1.40
2866 3584 6.082707 AGTACTCCCTCCGTTCCATAATTAT 58.917 40.000 0.00 0.00 0.00 1.28
2867 3585 5.461327 AGTACTCCCTCCGTTCCATAATTA 58.539 41.667 0.00 0.00 0.00 1.40
2868 3586 4.296056 AGTACTCCCTCCGTTCCATAATT 58.704 43.478 0.00 0.00 0.00 1.40
2870 3588 3.393426 AGTACTCCCTCCGTTCCATAA 57.607 47.619 0.00 0.00 0.00 1.90
2871 3589 4.524802 TTAGTACTCCCTCCGTTCCATA 57.475 45.455 0.00 0.00 0.00 2.74
2872 3590 3.393426 TTAGTACTCCCTCCGTTCCAT 57.607 47.619 0.00 0.00 0.00 3.41
2873 3591 2.905415 TTAGTACTCCCTCCGTTCCA 57.095 50.000 0.00 0.00 0.00 3.53
2875 3593 5.975282 AGAAATTTAGTACTCCCTCCGTTC 58.025 41.667 0.00 0.00 0.00 3.95
2879 3716 6.948589 ACTCAAGAAATTTAGTACTCCCTCC 58.051 40.000 0.00 0.00 0.00 4.30
2907 3744 4.888038 TGAGCAGAATTGTATGTGATGC 57.112 40.909 0.00 0.00 0.00 3.91
2922 3759 1.614903 TGGCAAAACTTGGATGAGCAG 59.385 47.619 0.00 0.00 0.00 4.24
2930 3767 3.132925 CAAACAGGATGGCAAAACTTGG 58.867 45.455 0.00 0.00 43.62 3.61
2937 3774 2.744062 CCACCAAACAGGATGGCAA 58.256 52.632 0.00 0.00 43.62 4.52
2987 3824 9.574516 GGGTTTACTTCCTATTTGTGATCATAT 57.425 33.333 0.00 0.00 0.00 1.78
3012 3849 4.261572 CGGTATTTCAATTGGCACCATAGG 60.262 45.833 5.42 0.00 0.00 2.57
3013 3850 4.578516 TCGGTATTTCAATTGGCACCATAG 59.421 41.667 5.42 0.00 0.00 2.23
3129 3972 8.834465 CAAAGTGGTCCTGAATATTCTATGAAG 58.166 37.037 16.24 5.08 0.00 3.02
3177 4020 5.649782 ATAGGAGGATTTTGCTGTTTGTG 57.350 39.130 0.00 0.00 0.00 3.33
3200 4043 6.947464 ACAAGTGGTGCTGAATACTACTAAT 58.053 36.000 0.00 0.00 38.67 1.73
3204 4047 5.941948 AAACAAGTGGTGCTGAATACTAC 57.058 39.130 0.00 0.00 0.00 2.73
3205 4048 6.296026 AGAAAACAAGTGGTGCTGAATACTA 58.704 36.000 0.00 0.00 0.00 1.82
3206 4049 5.133221 AGAAAACAAGTGGTGCTGAATACT 58.867 37.500 0.00 0.00 0.00 2.12
3207 4050 5.438761 AGAAAACAAGTGGTGCTGAATAC 57.561 39.130 0.00 0.00 0.00 1.89
3209 4052 4.402155 TGAAGAAAACAAGTGGTGCTGAAT 59.598 37.500 0.00 0.00 0.00 2.57
3211 4054 3.351740 TGAAGAAAACAAGTGGTGCTGA 58.648 40.909 0.00 0.00 0.00 4.26
3212 4055 3.781079 TGAAGAAAACAAGTGGTGCTG 57.219 42.857 0.00 0.00 0.00 4.41
3213 4056 5.376625 TCTATGAAGAAAACAAGTGGTGCT 58.623 37.500 0.00 0.00 0.00 4.40
3214 4057 5.239525 ACTCTATGAAGAAAACAAGTGGTGC 59.760 40.000 0.00 0.00 0.00 5.01
3215 4058 6.867662 ACTCTATGAAGAAAACAAGTGGTG 57.132 37.500 0.00 0.00 0.00 4.17
3216 4059 9.220767 GAATACTCTATGAAGAAAACAAGTGGT 57.779 33.333 0.00 0.00 0.00 4.16
3217 4060 9.219603 TGAATACTCTATGAAGAAAACAAGTGG 57.780 33.333 0.00 0.00 0.00 4.00
3222 4065 9.996554 TGAACTGAATACTCTATGAAGAAAACA 57.003 29.630 0.00 0.00 0.00 2.83
3224 4067 9.155975 GCTGAACTGAATACTCTATGAAGAAAA 57.844 33.333 0.00 0.00 0.00 2.29
3225 4068 7.766278 GGCTGAACTGAATACTCTATGAAGAAA 59.234 37.037 0.00 0.00 0.00 2.52
3226 4069 7.268586 GGCTGAACTGAATACTCTATGAAGAA 58.731 38.462 0.00 0.00 0.00 2.52
3227 4070 6.183360 GGGCTGAACTGAATACTCTATGAAGA 60.183 42.308 0.00 0.00 0.00 2.87
3228 4071 5.988561 GGGCTGAACTGAATACTCTATGAAG 59.011 44.000 0.00 0.00 0.00 3.02
3229 4072 5.163301 GGGGCTGAACTGAATACTCTATGAA 60.163 44.000 0.00 0.00 0.00 2.57
3230 4073 4.345257 GGGGCTGAACTGAATACTCTATGA 59.655 45.833 0.00 0.00 0.00 2.15
3231 4074 4.101585 TGGGGCTGAACTGAATACTCTATG 59.898 45.833 0.00 0.00 0.00 2.23
3232 4075 4.101741 GTGGGGCTGAACTGAATACTCTAT 59.898 45.833 0.00 0.00 0.00 1.98
3233 4076 3.451178 GTGGGGCTGAACTGAATACTCTA 59.549 47.826 0.00 0.00 0.00 2.43
3234 4077 2.237392 GTGGGGCTGAACTGAATACTCT 59.763 50.000 0.00 0.00 0.00 3.24
3235 4078 2.237392 AGTGGGGCTGAACTGAATACTC 59.763 50.000 0.00 0.00 0.00 2.59
3236 4079 2.269940 AGTGGGGCTGAACTGAATACT 58.730 47.619 0.00 0.00 0.00 2.12
3237 4080 2.749621 CAAGTGGGGCTGAACTGAATAC 59.250 50.000 0.00 0.00 0.00 1.89
3238 4081 2.375174 ACAAGTGGGGCTGAACTGAATA 59.625 45.455 0.00 0.00 0.00 1.75
3239 4082 1.145738 ACAAGTGGGGCTGAACTGAAT 59.854 47.619 0.00 0.00 0.00 2.57
3240 4083 0.550914 ACAAGTGGGGCTGAACTGAA 59.449 50.000 0.00 0.00 0.00 3.02
3241 4084 0.550914 AACAAGTGGGGCTGAACTGA 59.449 50.000 0.00 0.00 0.00 3.41
3242 4085 1.402787 AAACAAGTGGGGCTGAACTG 58.597 50.000 0.00 0.00 0.00 3.16
3243 4086 2.031870 GAAAACAAGTGGGGCTGAACT 58.968 47.619 0.00 0.00 0.00 3.01
3244 4087 2.031870 AGAAAACAAGTGGGGCTGAAC 58.968 47.619 0.00 0.00 0.00 3.18
3245 4088 2.452600 AGAAAACAAGTGGGGCTGAA 57.547 45.000 0.00 0.00 0.00 3.02
3246 4089 2.306847 GAAGAAAACAAGTGGGGCTGA 58.693 47.619 0.00 0.00 0.00 4.26
3247 4090 2.031120 TGAAGAAAACAAGTGGGGCTG 58.969 47.619 0.00 0.00 0.00 4.85
3248 4091 2.452600 TGAAGAAAACAAGTGGGGCT 57.547 45.000 0.00 0.00 0.00 5.19
3249 4092 4.522789 TCTTATGAAGAAAACAAGTGGGGC 59.477 41.667 0.00 0.00 33.83 5.80
3250 4093 6.648879 TTCTTATGAAGAAAACAAGTGGGG 57.351 37.500 0.00 0.00 44.10 4.96
3293 4137 3.951563 AGCACATCCCCTAAGCAATAA 57.048 42.857 0.00 0.00 0.00 1.40
3295 4139 2.834638 AAGCACATCCCCTAAGCAAT 57.165 45.000 0.00 0.00 0.00 3.56
3369 4261 3.891366 AGAACAAGAGGTGGGTCAATTTG 59.109 43.478 0.00 0.00 0.00 2.32
3385 4277 7.876068 AGGTTTATCAACTCGATACAAGAACAA 59.124 33.333 0.00 0.00 36.29 2.83
3390 4282 7.827819 TTGAGGTTTATCAACTCGATACAAG 57.172 36.000 0.00 0.00 36.29 3.16
3412 4304 6.544038 TCTATGTCAACTGTCATGTTGTTG 57.456 37.500 16.22 16.22 45.26 3.33
3419 4311 6.475504 TGATTGGTTCTATGTCAACTGTCAT 58.524 36.000 0.00 0.00 0.00 3.06
3434 4326 7.601856 TGGTGTCAAAAGATTATGATTGGTTC 58.398 34.615 0.00 0.00 0.00 3.62
3448 4340 3.129287 GGCATACATCCTGGTGTCAAAAG 59.871 47.826 5.40 0.00 33.62 2.27
3454 4346 3.456380 AAAAGGCATACATCCTGGTGT 57.544 42.857 7.03 7.03 33.43 4.16
3456 4348 4.342092 GCATAAAAAGGCATACATCCTGGT 59.658 41.667 0.00 0.00 33.43 4.00
3489 4381 7.307337 GGTTAATGACAGAGCAAAAATGGTTTG 60.307 37.037 0.00 0.00 0.00 2.93
3493 4388 4.858692 CGGTTAATGACAGAGCAAAAATGG 59.141 41.667 0.00 0.00 0.00 3.16
3496 4391 6.428465 TGATACGGTTAATGACAGAGCAAAAA 59.572 34.615 0.00 0.00 0.00 1.94
3565 4462 5.416083 CAGGTCATGTAAGATCCAAACGTA 58.584 41.667 0.00 0.00 0.00 3.57
3566 4463 4.253685 CAGGTCATGTAAGATCCAAACGT 58.746 43.478 0.00 0.00 0.00 3.99
3567 4464 3.623060 CCAGGTCATGTAAGATCCAAACG 59.377 47.826 0.00 0.00 0.00 3.60
3588 4485 7.037438 TGAAGACGTAAACAAGTATATGGTCC 58.963 38.462 0.00 0.00 0.00 4.46
3802 4704 7.150783 ACATTAGCAAAGAAAAGAGGACATC 57.849 36.000 0.00 0.00 0.00 3.06
3840 4743 2.799412 GCACGAGGTCATCAGATGATTC 59.201 50.000 16.37 14.90 42.04 2.52
3885 4788 2.438434 GTGATGGGGTCCCTTGCG 60.438 66.667 8.15 0.00 36.94 4.85
3903 4806 4.339530 TCGATGATGTACTTCTTCAGGGAG 59.660 45.833 18.72 7.39 34.51 4.30
3959 4862 4.416620 GTCGTCAATCTTCTTCTCGATGT 58.583 43.478 0.00 0.00 0.00 3.06
4178 5081 7.284489 AGCTAGAGAGGTAGTACATGAGAAAAG 59.716 40.741 0.00 0.00 0.00 2.27
4179 5082 7.120051 AGCTAGAGAGGTAGTACATGAGAAAA 58.880 38.462 0.00 0.00 0.00 2.29
4208 5111 1.065709 GGATCGACAAAACTAGGGGCA 60.066 52.381 0.00 0.00 0.00 5.36
4232 5138 5.388475 CCTCTAACAACACAAGAAATCGACG 60.388 44.000 0.00 0.00 0.00 5.12
4260 5166 6.073385 AGCGAGCAATGAATTACAGTGATATG 60.073 38.462 0.00 2.25 43.07 1.78
4444 5352 3.460340 TCTCCCAAACAAACCCAGTAGAA 59.540 43.478 0.00 0.00 0.00 2.10
4556 5466 8.682936 ATAACAGAAGTTTCAATGTGAAGAGT 57.317 30.769 0.00 0.00 37.70 3.24
4627 5537 0.391263 GTCCCTCTTGTTACCCGCAG 60.391 60.000 0.00 0.00 0.00 5.18
4647 5580 2.960129 GCAATAGGGGCGACGTCG 60.960 66.667 32.57 32.57 43.27 5.12
4741 5779 4.014406 ACAATCGGTTGGGTATTTTCTCC 58.986 43.478 13.99 0.00 39.70 3.71
4757 5795 2.673368 GGTCACCTTTCTAGCACAATCG 59.327 50.000 0.00 0.00 0.00 3.34
4775 5825 2.280823 GACGATGACAGGACCCGGTC 62.281 65.000 9.30 9.30 40.62 4.79
4813 5863 6.064060 CCAAGATCAGTTAGGGATATTTGCA 58.936 40.000 0.00 0.00 0.00 4.08
4941 6265 6.147821 CCGTTCTCATCTCACACAAAATAGTT 59.852 38.462 0.00 0.00 0.00 2.24
4946 6270 4.066646 TCCGTTCTCATCTCACACAAAA 57.933 40.909 0.00 0.00 0.00 2.44
4949 6273 3.390135 GTTTCCGTTCTCATCTCACACA 58.610 45.455 0.00 0.00 0.00 3.72
4953 6277 1.710013 GCGTTTCCGTTCTCATCTCA 58.290 50.000 0.00 0.00 36.15 3.27
5001 6325 3.119602 CCCTCACTCACAAATCAATGCTG 60.120 47.826 0.00 0.00 0.00 4.41
5042 6366 1.319614 AAACGTTGCTTGGCACACCT 61.320 50.000 0.00 0.00 38.71 4.00
5049 6373 2.817258 TGAGGGAATAAACGTTGCTTGG 59.183 45.455 0.00 0.00 0.00 3.61
5121 6449 1.072331 TCCACTTTCCTCTCAACAGCC 59.928 52.381 0.00 0.00 0.00 4.85


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.