Multiple sequence alignment - TraesCS2D01G010100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2D01G010100 chr2D 100.000 3302 0 0 1 3302 5193545 5190244 0.000000e+00 6098.0
1 TraesCS2D01G010100 chr2D 82.190 1224 203 10 1001 2212 5178320 5177100 0.000000e+00 1038.0
2 TraesCS2D01G010100 chr2D 84.680 359 54 1 2229 2586 5177113 5176755 1.130000e-94 357.0
3 TraesCS2D01G010100 chr2A 92.159 2219 148 9 1 2212 3638751 3640950 0.000000e+00 3110.0
4 TraesCS2D01G010100 chr2A 88.820 1288 140 2 922 2209 3625961 3627244 0.000000e+00 1578.0
5 TraesCS2D01G010100 chr2A 87.565 1343 160 2 876 2212 3635531 3636872 0.000000e+00 1548.0
6 TraesCS2D01G010100 chr2A 85.991 1292 151 13 924 2213 3751687 3752950 0.000000e+00 1356.0
7 TraesCS2D01G010100 chr2A 84.584 733 72 23 2227 2948 3640935 3641637 0.000000e+00 689.0
8 TraesCS2D01G010100 chr2A 85.167 418 55 1 2238 2655 3636869 3637279 3.940000e-114 422.0
9 TraesCS2D01G010100 chr2A 84.028 432 60 6 2229 2655 3633612 3634039 1.100000e-109 407.0
10 TraesCS2D01G010100 chr2A 84.318 440 43 12 1 433 3634819 3635239 1.100000e-109 407.0
11 TraesCS2D01G010100 chr2A 82.902 386 35 12 2589 2949 3653450 3653829 5.320000e-83 318.0
12 TraesCS2D01G010100 chr2A 85.366 287 24 7 141 410 3597214 3597499 6.980000e-72 281.0
13 TraesCS2D01G010100 chr2A 85.366 287 24 7 141 410 3598719 3599004 6.980000e-72 281.0
14 TraesCS2D01G010100 chr2A 85.366 287 24 7 141 410 8184422 8184707 6.980000e-72 281.0
15 TraesCS2D01G010100 chr2A 94.915 177 9 0 420 596 124381838 124382014 9.020000e-71 278.0
16 TraesCS2D01G010100 chr2A 89.423 208 12 8 594 799 3635237 3635436 1.520000e-63 254.0
17 TraesCS2D01G010100 chr2A 79.931 289 30 16 2402 2687 3599395 3599658 1.560000e-43 187.0
18 TraesCS2D01G010100 chr2A 79.931 289 30 16 2402 2687 8185098 8185361 1.560000e-43 187.0
19 TraesCS2D01G010100 chr2A 91.667 48 4 0 594 641 3597528 3597575 2.130000e-07 67.6
20 TraesCS2D01G010100 chr2A 91.667 48 4 0 594 641 3599033 3599080 2.130000e-07 67.6
21 TraesCS2D01G010100 chr2A 91.667 48 4 0 594 641 8184736 8184783 2.130000e-07 67.6
22 TraesCS2D01G010100 chr2A 100.000 32 0 0 594 625 3631745 3631776 3.560000e-05 60.2
23 TraesCS2D01G010100 chr2A 94.444 36 1 1 2271 2305 3634427 3634462 2.000000e-03 54.7
24 TraesCS2D01G010100 chr2B 90.923 1300 114 4 915 2212 62203055 62204352 0.000000e+00 1744.0
25 TraesCS2D01G010100 chr2B 83.452 701 109 4 1403 2098 62348896 62349594 0.000000e+00 645.0
26 TraesCS2D01G010100 chr2B 86.453 406 53 2 2224 2627 62204333 62204738 8.410000e-121 444.0
27 TraesCS2D01G010100 chr2B 83.430 344 38 8 1 343 62202295 62202620 5.350000e-78 302.0
28 TraesCS2D01G010100 chr2B 88.525 122 10 2 2815 2932 62204741 62204862 9.550000e-31 145.0
29 TraesCS2D01G010100 chr2B 100.000 45 0 0 641 685 62202617 62202661 2.110000e-12 84.2
30 TraesCS2D01G010100 chrUn 84.475 1314 172 12 925 2212 15978332 15979639 0.000000e+00 1267.0
31 TraesCS2D01G010100 chrUn 90.346 694 61 3 975 1662 15981135 15981828 0.000000e+00 905.0
32 TraesCS2D01G010100 chrUn 82.614 811 105 15 2224 3003 15982433 15983238 0.000000e+00 684.0
33 TraesCS2D01G010100 chrUn 85.649 439 57 4 1778 2212 15982016 15982452 1.080000e-124 457.0
34 TraesCS2D01G010100 chrUn 85.280 428 60 2 2229 2655 15979626 15980051 3.910000e-119 438.0
35 TraesCS2D01G010100 chrUn 89.362 329 13 10 1 325 15980493 15980803 8.590000e-106 394.0
36 TraesCS2D01G010100 chrUn 86.321 212 17 5 594 804 15980853 15981053 1.540000e-53 220.0
37 TraesCS2D01G010100 chr1D 82.291 1231 196 13 999 2212 443115227 443116452 0.000000e+00 1046.0
38 TraesCS2D01G010100 chr1D 81.986 433 66 6 2229 2655 443116439 443116865 1.130000e-94 357.0
39 TraesCS2D01G010100 chr1D 96.532 173 5 1 432 604 238940216 238940387 5.390000e-73 285.0
40 TraesCS2D01G010100 chr3B 76.686 1231 232 38 980 2161 727410449 727411673 1.670000e-177 632.0
41 TraesCS2D01G010100 chr5D 95.055 182 8 1 420 601 274578000 274578180 5.390000e-73 285.0
42 TraesCS2D01G010100 chr4D 96.000 175 6 1 430 604 93338208 93338035 1.940000e-72 283.0
43 TraesCS2D01G010100 chr7A 93.617 188 11 1 414 600 324925012 324925199 2.510000e-71 279.0
44 TraesCS2D01G010100 chr6D 93.122 189 11 1 432 620 270689510 270689324 3.250000e-70 276.0
45 TraesCS2D01G010100 chr5B 93.548 186 9 3 432 616 504409006 504408823 1.170000e-69 274.0
46 TraesCS2D01G010100 chr4A 93.514 185 10 2 422 606 166991821 166992003 1.170000e-69 274.0
47 TraesCS2D01G010100 chr3D 87.302 126 15 1 979 1103 548604162 548604287 3.430000e-30 143.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2D01G010100 chr2D 5190244 5193545 3301 True 6098.000000 6098 100.000000 1 3302 1 chr2D.!!$R1 3301
1 TraesCS2D01G010100 chr2D 5176755 5178320 1565 True 697.500000 1038 83.435000 1001 2586 2 chr2D.!!$R2 1585
2 TraesCS2D01G010100 chr2A 3625961 3627244 1283 False 1578.000000 1578 88.820000 922 2209 1 chr2A.!!$F1 1287
3 TraesCS2D01G010100 chr2A 3751687 3752950 1263 False 1356.000000 1356 85.991000 924 2213 1 chr2A.!!$F3 1289
4 TraesCS2D01G010100 chr2A 3631745 3641637 9892 False 772.433333 3110 89.076444 1 2948 9 chr2A.!!$F6 2947
5 TraesCS2D01G010100 chr2B 62348896 62349594 698 False 645.000000 645 83.452000 1403 2098 1 chr2B.!!$F1 695
6 TraesCS2D01G010100 chr2B 62202295 62204862 2567 False 543.840000 1744 89.866200 1 2932 5 chr2B.!!$F2 2931
7 TraesCS2D01G010100 chrUn 15978332 15983238 4906 False 623.571429 1267 86.292429 1 3003 7 chrUn.!!$F1 3002
8 TraesCS2D01G010100 chr1D 443115227 443116865 1638 False 701.500000 1046 82.138500 999 2655 2 chr1D.!!$F2 1656
9 TraesCS2D01G010100 chr3B 727410449 727411673 1224 False 632.000000 632 76.686000 980 2161 1 chr3B.!!$F1 1181

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
750 8029 0.040058 TTCACATGGCAGCCCAAGAT 59.960 50.0 9.64 0.0 46.14 2.40 F
2109 9569 0.317020 GACAGTGTTTCACAAGCGGC 60.317 55.0 0.00 0.0 36.74 6.53 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2238 9698 0.032615 AGGTTTGGGTGCTGGTCAAA 60.033 50.0 0.0 0.0 0.0 2.69 R
3136 10631 0.253044 GCACCTGAGAGTTGGGCATA 59.747 55.0 0.0 0.0 0.0 3.14 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
26 7077 3.250762 TGCTGCTGTTGTCATTAACTCAC 59.749 43.478 0.00 0.00 0.00 3.51
80 7131 6.610075 ATGAGTGTCCTGGCAAAAATAAAT 57.390 33.333 0.00 0.00 0.00 1.40
81 7132 7.716799 ATGAGTGTCCTGGCAAAAATAAATA 57.283 32.000 0.00 0.00 0.00 1.40
82 7133 7.716799 TGAGTGTCCTGGCAAAAATAAATAT 57.283 32.000 0.00 0.00 0.00 1.28
83 7134 8.815565 TGAGTGTCCTGGCAAAAATAAATATA 57.184 30.769 0.00 0.00 0.00 0.86
84 7135 9.420118 TGAGTGTCCTGGCAAAAATAAATATAT 57.580 29.630 0.00 0.00 0.00 0.86
124 7175 5.012328 ACTATCAGCGGTAAAAGGAGAAG 57.988 43.478 0.00 0.00 0.00 2.85
176 7232 6.715347 ACAGTAGAAACCAAAGCAAATTCT 57.285 33.333 0.00 0.00 34.85 2.40
248 7304 5.067805 ACCCATTTCTGAGTCTTTTGTCAAC 59.932 40.000 0.00 0.00 0.00 3.18
436 7496 5.791336 TGTGACATCTTGACTTGTACTCT 57.209 39.130 0.00 0.00 0.00 3.24
536 7596 8.854614 AGAGTGTAGATTTACTCATTTTGCTT 57.145 30.769 7.09 0.00 44.41 3.91
549 7609 7.978982 ACTCATTTTGCTTCATATGTAGTCAC 58.021 34.615 10.61 0.00 0.00 3.67
643 7703 2.853235 CATCTAGATGCAGATGCCCA 57.147 50.000 19.47 0.00 43.95 5.36
750 8029 0.040058 TTCACATGGCAGCCCAAGAT 59.960 50.000 9.64 0.00 46.14 2.40
751 8030 0.394762 TCACATGGCAGCCCAAGATC 60.395 55.000 9.64 0.00 46.14 2.75
752 8031 1.452651 ACATGGCAGCCCAAGATCG 60.453 57.895 9.64 0.00 46.14 3.69
753 8032 2.517875 ATGGCAGCCCAAGATCGC 60.518 61.111 9.64 0.00 46.14 4.58
754 8033 3.052909 ATGGCAGCCCAAGATCGCT 62.053 57.895 9.64 0.00 46.14 4.93
760 8041 1.541147 CAGCCCAAGATCGCTCAAAAA 59.459 47.619 0.00 0.00 31.40 1.94
767 8048 6.563422 CCCAAGATCGCTCAAAAATTATCAA 58.437 36.000 0.00 0.00 0.00 2.57
798 8079 4.334759 CCACAGCATATAATATCCAGCAGC 59.665 45.833 0.00 0.00 0.00 5.25
813 8094 3.715097 AGCAGCCTCAGTGCCTCC 61.715 66.667 0.00 0.00 42.24 4.30
828 8109 1.211949 GCCTCCCACTAGTTTGCCATA 59.788 52.381 0.00 0.00 0.00 2.74
885 8166 1.003233 GTGGCTGGGTCTTGAGTCC 60.003 63.158 0.00 0.00 0.00 3.85
945 8226 8.158132 AGTAGCTAGTATCACTCACTGCTAATA 58.842 37.037 0.00 0.00 35.93 0.98
952 8233 9.314133 AGTATCACTCACTGCTAATATTATCCA 57.686 33.333 0.00 0.00 0.00 3.41
1172 8455 2.813474 CGAAGCGCGGGACATCAA 60.813 61.111 8.83 0.00 36.03 2.57
1221 8504 5.121380 AGATGTTGAGGCAAGGAATGTAT 57.879 39.130 0.00 0.00 0.00 2.29
1447 8784 1.344763 CCCTTGAAGAGACCGTGTCTT 59.655 52.381 10.56 10.56 43.53 3.01
1626 8966 1.599542 GCTGTACTTCCGATCATTGGC 59.400 52.381 0.00 0.00 0.00 4.52
1859 9319 7.939039 TGAGGATATTAATGAAGGAACATGGAC 59.061 37.037 0.00 0.00 0.00 4.02
1976 9436 1.270358 GGAAGCACTTCGACTGGACTT 60.270 52.381 4.40 0.00 40.37 3.01
1982 9442 3.312828 CACTTCGACTGGACTTTCTCTG 58.687 50.000 0.00 0.00 0.00 3.35
1994 9454 4.213059 GGACTTTCTCTGTCAAGAAGCTTG 59.787 45.833 2.10 0.84 36.66 4.01
2030 9490 5.941058 TCAAATCAATTGCATTTGGAAGCAT 59.059 32.000 25.90 4.55 40.33 3.79
2039 9499 3.679639 GCATTTGGAAGCATAAACCCTGG 60.680 47.826 0.00 0.00 0.00 4.45
2046 9506 1.103398 GCATAAACCCTGGCGAGCAT 61.103 55.000 0.00 0.00 0.00 3.79
2053 9513 1.039233 CCCTGGCGAGCATCCAAATT 61.039 55.000 0.00 0.00 32.41 1.82
2109 9569 0.317020 GACAGTGTTTCACAAGCGGC 60.317 55.000 0.00 0.00 36.74 6.53
2111 9571 2.193536 AGTGTTTCACAAGCGGCCC 61.194 57.895 0.00 0.00 36.74 5.80
2185 9645 4.023792 CAGTTGCTGAATGTGTAAGAGCAA 60.024 41.667 0.00 0.00 45.07 3.91
2186 9646 4.754372 TTGCTGAATGTGTAAGAGCAAG 57.246 40.909 0.00 0.00 43.04 4.01
2201 9661 3.990469 AGAGCAAGTAAACAGACACATCG 59.010 43.478 0.00 0.00 0.00 3.84
2212 9672 4.072131 ACAGACACATCGCCTTATGTTTT 58.928 39.130 0.00 0.00 38.01 2.43
2213 9673 4.518970 ACAGACACATCGCCTTATGTTTTT 59.481 37.500 0.00 0.00 38.01 1.94
2234 9694 3.713826 TTTTAGGAAAGGACATCGCCT 57.286 42.857 0.00 0.00 40.93 5.52
2299 9759 3.343617 CGGTGTATTGTTGGAGATTGGT 58.656 45.455 0.00 0.00 0.00 3.67
2305 9765 6.206634 GTGTATTGTTGGAGATTGGTGAAGAA 59.793 38.462 0.00 0.00 0.00 2.52
2307 9767 4.437682 TGTTGGAGATTGGTGAAGAACT 57.562 40.909 0.00 0.00 0.00 3.01
2325 9785 6.749923 AGAACTGCAGATATTTCTTGGTTC 57.250 37.500 23.35 9.74 35.09 3.62
2341 9801 4.729227 TGGTTCGCAACTATCATCAGTA 57.271 40.909 0.00 0.00 0.00 2.74
2384 9847 4.100035 CCTAAGATCAGTGTGCAGGACATA 59.900 45.833 0.00 0.00 36.78 2.29
2387 9850 4.449131 AGATCAGTGTGCAGGACATAATG 58.551 43.478 0.00 0.00 36.88 1.90
2389 9852 3.599343 TCAGTGTGCAGGACATAATGTC 58.401 45.455 0.00 0.00 46.23 3.06
2448 9911 0.324738 TCTTGGATGGAGGTCTCGCT 60.325 55.000 0.00 0.00 0.00 4.93
2466 9929 2.100418 CGCTTACCTCCCTACTACAACC 59.900 54.545 0.00 0.00 0.00 3.77
2541 10004 0.531532 CGCGCATCAGGAGGAAGAAT 60.532 55.000 8.75 0.00 0.00 2.40
2542 10005 0.942962 GCGCATCAGGAGGAAGAATG 59.057 55.000 0.30 0.00 0.00 2.67
2574 10038 1.229428 AACATGTTGTCTGTGGCTCG 58.771 50.000 11.07 0.00 0.00 5.03
2693 10164 2.351738 GGTAGTGTTTGGATGCTTGTGC 60.352 50.000 0.00 0.00 40.20 4.57
2694 10165 0.675633 AGTGTTTGGATGCTTGTGCC 59.324 50.000 0.00 0.00 38.71 5.01
2698 10169 1.186917 TTTGGATGCTTGTGCCTGGG 61.187 55.000 0.00 0.00 38.71 4.45
2715 10186 4.323562 GCCTGGGTATGTACTTTCAGAGTT 60.324 45.833 0.00 0.00 39.86 3.01
2744 10232 7.308589 CGGTTGAATTAGAATCCAAGACAAGTT 60.309 37.037 0.00 0.00 0.00 2.66
2745 10233 8.360390 GGTTGAATTAGAATCCAAGACAAGTTT 58.640 33.333 0.00 0.00 0.00 2.66
2818 10309 8.086143 ACTACATCAACCTAAGCCTTGTAATA 57.914 34.615 0.00 0.00 0.00 0.98
2819 10310 8.545472 ACTACATCAACCTAAGCCTTGTAATAA 58.455 33.333 0.00 0.00 0.00 1.40
2824 10315 6.605594 TCAACCTAAGCCTTGTAATAATTGGG 59.394 38.462 0.00 0.00 0.00 4.12
2832 10323 5.682212 GCCTTGTAATAATTGGGCTTGAAGG 60.682 44.000 0.00 0.00 36.96 3.46
2837 10328 6.951198 TGTAATAATTGGGCTTGAAGGAAAGA 59.049 34.615 0.00 0.00 0.00 2.52
2856 10349 3.956744 AGAGTAGAGAAAAATGCCCCAC 58.043 45.455 0.00 0.00 0.00 4.61
2875 10368 4.701651 CCCACATTTGCTCTGTTTCTGATA 59.298 41.667 0.00 0.00 0.00 2.15
2881 10374 6.486253 TTTGCTCTGTTTCTGATATGTGTC 57.514 37.500 0.00 0.00 0.00 3.67
2886 10379 6.101650 TCTGTTTCTGATATGTGTCTGTGT 57.898 37.500 0.00 0.00 0.00 3.72
2932 10427 5.829924 ACAAGTTTCAATTCCTCTGTCACAT 59.170 36.000 0.00 0.00 0.00 3.21
2934 10429 5.380043 AGTTTCAATTCCTCTGTCACATGT 58.620 37.500 0.00 0.00 0.00 3.21
2938 10433 8.946085 GTTTCAATTCCTCTGTCACATGTATTA 58.054 33.333 0.00 0.00 0.00 0.98
2943 10438 7.423844 TTCCTCTGTCACATGTATTATCTGT 57.576 36.000 0.00 0.00 0.00 3.41
2952 10447 8.614469 TCACATGTATTATCTGTGACAACAAA 57.386 30.769 0.00 0.00 43.10 2.83
2953 10448 9.061435 TCACATGTATTATCTGTGACAACAAAA 57.939 29.630 0.00 0.00 43.10 2.44
2954 10449 9.676195 CACATGTATTATCTGTGACAACAAAAA 57.324 29.630 0.00 0.00 42.20 1.94
2975 10470 7.761651 AAAAAGTCTTGCTGAATTTGAAGAC 57.238 32.000 0.00 0.00 41.37 3.01
2983 10478 5.132502 TGCTGAATTTGAAGACCAGAAAGA 58.867 37.500 0.00 0.00 0.00 2.52
2987 10482 7.967303 GCTGAATTTGAAGACCAGAAAGATAAG 59.033 37.037 0.00 0.00 0.00 1.73
3003 10498 0.822164 TAAGCTGGAACGGGAGTAGC 59.178 55.000 0.00 0.00 46.69 3.58
3004 10499 2.202756 GCTGGAACGGGAGTAGCG 60.203 66.667 0.00 0.00 46.69 4.26
3005 10500 2.494918 CTGGAACGGGAGTAGCGG 59.505 66.667 0.00 0.00 46.69 5.52
3006 10501 3.072468 TGGAACGGGAGTAGCGGG 61.072 66.667 0.00 0.00 46.69 6.13
3007 10502 4.525949 GGAACGGGAGTAGCGGGC 62.526 72.222 0.00 0.00 46.69 6.13
3008 10503 3.766691 GAACGGGAGTAGCGGGCA 61.767 66.667 0.00 0.00 46.69 5.36
3009 10504 3.305177 GAACGGGAGTAGCGGGCAA 62.305 63.158 0.00 0.00 46.69 4.52
3010 10505 2.588856 GAACGGGAGTAGCGGGCAAT 62.589 60.000 0.00 0.00 46.69 3.56
3011 10506 2.588877 CGGGAGTAGCGGGCAATG 60.589 66.667 0.00 0.00 0.00 2.82
3012 10507 2.902343 GGGAGTAGCGGGCAATGC 60.902 66.667 0.00 0.00 0.00 3.56
3013 10508 2.124736 GGAGTAGCGGGCAATGCA 60.125 61.111 7.79 0.00 33.85 3.96
3014 10509 1.526917 GGAGTAGCGGGCAATGCAT 60.527 57.895 7.79 0.00 33.85 3.96
3015 10510 1.103398 GGAGTAGCGGGCAATGCATT 61.103 55.000 5.99 5.99 33.85 3.56
3016 10511 0.029834 GAGTAGCGGGCAATGCATTG 59.970 55.000 30.92 30.92 40.66 2.82
3017 10512 0.394216 AGTAGCGGGCAATGCATTGA 60.394 50.000 37.36 16.67 40.14 2.57
3018 10513 0.029834 GTAGCGGGCAATGCATTGAG 59.970 55.000 37.36 27.21 40.14 3.02
3019 10514 1.102809 TAGCGGGCAATGCATTGAGG 61.103 55.000 37.36 25.64 40.14 3.86
3020 10515 2.417257 GCGGGCAATGCATTGAGGA 61.417 57.895 37.36 0.00 40.14 3.71
3021 10516 1.731700 CGGGCAATGCATTGAGGAG 59.268 57.895 37.36 22.11 40.14 3.69
3022 10517 1.731433 CGGGCAATGCATTGAGGAGG 61.731 60.000 37.36 19.15 40.14 4.30
3023 10518 0.685458 GGGCAATGCATTGAGGAGGT 60.685 55.000 37.36 0.00 40.14 3.85
3024 10519 1.410083 GGGCAATGCATTGAGGAGGTA 60.410 52.381 37.36 0.00 40.14 3.08
3025 10520 2.378038 GGCAATGCATTGAGGAGGTAA 58.622 47.619 37.36 0.00 40.14 2.85
3026 10521 2.099756 GGCAATGCATTGAGGAGGTAAC 59.900 50.000 37.36 18.67 40.14 2.50
3027 10522 2.223340 GCAATGCATTGAGGAGGTAACG 60.223 50.000 37.36 11.51 40.40 3.18
3028 10523 3.270027 CAATGCATTGAGGAGGTAACGA 58.730 45.455 31.47 0.00 40.40 3.85
3029 10524 3.845781 ATGCATTGAGGAGGTAACGAT 57.154 42.857 0.00 0.00 46.39 3.73
3030 10525 4.955811 ATGCATTGAGGAGGTAACGATA 57.044 40.909 0.00 0.00 46.39 2.92
3031 10526 4.746535 TGCATTGAGGAGGTAACGATAA 57.253 40.909 0.00 0.00 46.39 1.75
3032 10527 5.290493 TGCATTGAGGAGGTAACGATAAT 57.710 39.130 0.00 0.00 46.39 1.28
3033 10528 6.413783 TGCATTGAGGAGGTAACGATAATA 57.586 37.500 0.00 0.00 46.39 0.98
3034 10529 6.822442 TGCATTGAGGAGGTAACGATAATAA 58.178 36.000 0.00 0.00 46.39 1.40
3035 10530 7.276658 TGCATTGAGGAGGTAACGATAATAAA 58.723 34.615 0.00 0.00 46.39 1.40
3036 10531 7.441157 TGCATTGAGGAGGTAACGATAATAAAG 59.559 37.037 0.00 0.00 46.39 1.85
3037 10532 7.656137 GCATTGAGGAGGTAACGATAATAAAGA 59.344 37.037 0.00 0.00 46.39 2.52
3038 10533 9.197694 CATTGAGGAGGTAACGATAATAAAGAG 57.802 37.037 0.00 0.00 46.39 2.85
3039 10534 6.746120 TGAGGAGGTAACGATAATAAAGAGC 58.254 40.000 0.00 0.00 46.39 4.09
3040 10535 6.099159 AGGAGGTAACGATAATAAAGAGCC 57.901 41.667 0.00 0.00 46.39 4.70
3041 10536 5.011840 AGGAGGTAACGATAATAAAGAGCCC 59.988 44.000 0.00 0.00 46.39 5.19
3042 10537 5.221581 GGAGGTAACGATAATAAAGAGCCCA 60.222 44.000 0.00 0.00 46.39 5.36
3043 10538 6.435292 AGGTAACGATAATAAAGAGCCCAT 57.565 37.500 0.00 0.00 46.39 4.00
3044 10539 6.231211 AGGTAACGATAATAAAGAGCCCATG 58.769 40.000 0.00 0.00 46.39 3.66
3045 10540 6.042781 AGGTAACGATAATAAAGAGCCCATGA 59.957 38.462 0.00 0.00 46.39 3.07
3046 10541 6.369065 GGTAACGATAATAAAGAGCCCATGAG 59.631 42.308 0.00 0.00 0.00 2.90
3047 10542 4.319177 ACGATAATAAAGAGCCCATGAGC 58.681 43.478 0.00 0.00 0.00 4.26
3049 10544 4.391216 CGATAATAAAGAGCCCATGAGCTG 59.609 45.833 6.40 0.00 45.15 4.24
3050 10545 3.939740 AATAAAGAGCCCATGAGCTGA 57.060 42.857 6.40 0.00 45.15 4.26
3051 10546 2.996249 TAAAGAGCCCATGAGCTGAG 57.004 50.000 6.40 0.00 45.15 3.35
3052 10547 0.394080 AAAGAGCCCATGAGCTGAGC 60.394 55.000 6.40 0.00 45.15 4.26
3053 10548 1.273269 AAGAGCCCATGAGCTGAGCT 61.273 55.000 6.69 6.69 45.15 4.09
3054 10549 1.524165 GAGCCCATGAGCTGAGCTG 60.524 63.158 13.71 0.00 45.15 4.24
3055 10550 3.210528 GCCCATGAGCTGAGCTGC 61.211 66.667 13.71 4.50 39.88 5.25
3056 10551 2.271173 CCCATGAGCTGAGCTGCA 59.729 61.111 13.71 10.46 39.88 4.41
3057 10552 1.152943 CCCATGAGCTGAGCTGCAT 60.153 57.895 13.71 12.44 39.88 3.96
3058 10553 0.752009 CCCATGAGCTGAGCTGCATT 60.752 55.000 13.71 0.00 39.88 3.56
3059 10554 1.103803 CCATGAGCTGAGCTGCATTT 58.896 50.000 13.71 0.00 39.88 2.32
3060 10555 1.476891 CCATGAGCTGAGCTGCATTTT 59.523 47.619 13.71 0.00 39.88 1.82
3061 10556 2.479730 CCATGAGCTGAGCTGCATTTTC 60.480 50.000 13.71 0.00 39.88 2.29
3062 10557 2.195741 TGAGCTGAGCTGCATTTTCT 57.804 45.000 13.71 0.00 39.88 2.52
3063 10558 3.339253 TGAGCTGAGCTGCATTTTCTA 57.661 42.857 13.71 0.00 39.88 2.10
3064 10559 3.882444 TGAGCTGAGCTGCATTTTCTAT 58.118 40.909 13.71 0.00 39.88 1.98
3065 10560 3.875727 TGAGCTGAGCTGCATTTTCTATC 59.124 43.478 13.71 0.00 39.88 2.08
3066 10561 4.128643 GAGCTGAGCTGCATTTTCTATCT 58.871 43.478 13.71 0.00 39.88 1.98
3067 10562 4.525024 AGCTGAGCTGCATTTTCTATCTT 58.475 39.130 5.97 0.00 37.57 2.40
3068 10563 4.948621 AGCTGAGCTGCATTTTCTATCTTT 59.051 37.500 5.97 0.00 37.57 2.52
3069 10564 5.035443 GCTGAGCTGCATTTTCTATCTTTG 58.965 41.667 1.02 0.00 0.00 2.77
3070 10565 5.571784 TGAGCTGCATTTTCTATCTTTGG 57.428 39.130 1.02 0.00 0.00 3.28
3071 10566 5.255687 TGAGCTGCATTTTCTATCTTTGGA 58.744 37.500 1.02 0.00 0.00 3.53
3072 10567 5.124457 TGAGCTGCATTTTCTATCTTTGGAC 59.876 40.000 1.02 0.00 0.00 4.02
3073 10568 5.259632 AGCTGCATTTTCTATCTTTGGACT 58.740 37.500 1.02 0.00 0.00 3.85
3074 10569 5.713861 AGCTGCATTTTCTATCTTTGGACTT 59.286 36.000 1.02 0.00 0.00 3.01
3075 10570 5.803967 GCTGCATTTTCTATCTTTGGACTTG 59.196 40.000 0.00 0.00 0.00 3.16
3076 10571 6.349611 GCTGCATTTTCTATCTTTGGACTTGA 60.350 38.462 0.00 0.00 0.00 3.02
3077 10572 7.523293 TGCATTTTCTATCTTTGGACTTGAA 57.477 32.000 0.00 0.00 0.00 2.69
3078 10573 7.370383 TGCATTTTCTATCTTTGGACTTGAAC 58.630 34.615 0.00 0.00 0.00 3.18
3079 10574 7.014134 TGCATTTTCTATCTTTGGACTTGAACA 59.986 33.333 0.00 0.00 0.00 3.18
3080 10575 7.867403 GCATTTTCTATCTTTGGACTTGAACAA 59.133 33.333 0.00 0.00 0.00 2.83
3081 10576 9.748708 CATTTTCTATCTTTGGACTTGAACAAA 57.251 29.630 0.00 0.00 35.49 2.83
3106 10601 8.482852 AAAAGGAATCTGATACATTAATGGGG 57.517 34.615 19.37 5.06 0.00 4.96
3107 10602 7.406620 AAGGAATCTGATACATTAATGGGGA 57.593 36.000 19.37 9.66 0.00 4.81
3108 10603 7.025520 AGGAATCTGATACATTAATGGGGAG 57.974 40.000 19.37 9.41 0.00 4.30
3109 10604 6.794493 AGGAATCTGATACATTAATGGGGAGA 59.206 38.462 19.37 13.78 0.00 3.71
3110 10605 7.295672 AGGAATCTGATACATTAATGGGGAGAA 59.704 37.037 19.37 1.88 0.00 2.87
3111 10606 7.609532 GGAATCTGATACATTAATGGGGAGAAG 59.390 40.741 19.37 9.00 0.00 2.85
3112 10607 7.639062 ATCTGATACATTAATGGGGAGAAGT 57.361 36.000 19.37 0.00 0.00 3.01
3113 10608 8.742125 ATCTGATACATTAATGGGGAGAAGTA 57.258 34.615 19.37 0.97 0.00 2.24
3114 10609 8.561536 TCTGATACATTAATGGGGAGAAGTAA 57.438 34.615 19.37 0.00 0.00 2.24
3115 10610 8.998814 TCTGATACATTAATGGGGAGAAGTAAA 58.001 33.333 19.37 0.00 0.00 2.01
3116 10611 9.627123 CTGATACATTAATGGGGAGAAGTAAAA 57.373 33.333 19.37 0.00 0.00 1.52
3117 10612 9.983024 TGATACATTAATGGGGAGAAGTAAAAA 57.017 29.630 19.37 0.00 0.00 1.94
3135 10630 4.853924 AAAAATTGCTAGTGTGGGTCTG 57.146 40.909 0.00 0.00 0.00 3.51
3136 10631 3.508845 AAATTGCTAGTGTGGGTCTGT 57.491 42.857 0.00 0.00 0.00 3.41
3137 10632 4.634012 AAATTGCTAGTGTGGGTCTGTA 57.366 40.909 0.00 0.00 0.00 2.74
3138 10633 4.844349 AATTGCTAGTGTGGGTCTGTAT 57.156 40.909 0.00 0.00 0.00 2.29
3139 10634 3.610040 TTGCTAGTGTGGGTCTGTATG 57.390 47.619 0.00 0.00 0.00 2.39
3140 10635 1.207089 TGCTAGTGTGGGTCTGTATGC 59.793 52.381 0.00 0.00 0.00 3.14
3141 10636 1.473434 GCTAGTGTGGGTCTGTATGCC 60.473 57.143 0.00 0.00 0.00 4.40
3142 10637 1.139058 CTAGTGTGGGTCTGTATGCCC 59.861 57.143 0.00 0.00 45.04 5.36
3147 10642 3.478540 GGGTCTGTATGCCCAACTC 57.521 57.895 0.00 0.00 44.23 3.01
3148 10643 0.912486 GGGTCTGTATGCCCAACTCT 59.088 55.000 0.00 0.00 44.23 3.24
3149 10644 1.134371 GGGTCTGTATGCCCAACTCTC 60.134 57.143 0.00 0.00 44.23 3.20
3150 10645 1.555075 GGTCTGTATGCCCAACTCTCA 59.445 52.381 0.00 0.00 0.00 3.27
3151 10646 2.419297 GGTCTGTATGCCCAACTCTCAG 60.419 54.545 0.00 0.00 0.00 3.35
3152 10647 1.833630 TCTGTATGCCCAACTCTCAGG 59.166 52.381 0.00 0.00 0.00 3.86
3153 10648 1.556911 CTGTATGCCCAACTCTCAGGT 59.443 52.381 0.00 0.00 0.00 4.00
3154 10649 1.278985 TGTATGCCCAACTCTCAGGTG 59.721 52.381 0.00 0.00 31.21 4.00
3155 10650 0.253044 TATGCCCAACTCTCAGGTGC 59.747 55.000 0.00 0.00 29.64 5.01
3156 10651 2.360475 GCCCAACTCTCAGGTGCC 60.360 66.667 0.00 0.00 29.64 5.01
3157 10652 2.900106 GCCCAACTCTCAGGTGCCT 61.900 63.158 0.00 0.00 29.64 4.75
3158 10653 1.763770 CCCAACTCTCAGGTGCCTT 59.236 57.895 0.00 0.00 29.64 4.35
3159 10654 0.984230 CCCAACTCTCAGGTGCCTTA 59.016 55.000 0.00 0.00 29.64 2.69
3160 10655 1.351017 CCCAACTCTCAGGTGCCTTAA 59.649 52.381 0.00 0.00 29.64 1.85
3161 10656 2.025887 CCCAACTCTCAGGTGCCTTAAT 60.026 50.000 0.00 0.00 29.64 1.40
3162 10657 3.199946 CCCAACTCTCAGGTGCCTTAATA 59.800 47.826 0.00 0.00 29.64 0.98
3163 10658 4.324254 CCCAACTCTCAGGTGCCTTAATAA 60.324 45.833 0.00 0.00 29.64 1.40
3164 10659 5.440610 CCAACTCTCAGGTGCCTTAATAAT 58.559 41.667 0.00 0.00 29.64 1.28
3165 10660 5.888161 CCAACTCTCAGGTGCCTTAATAATT 59.112 40.000 0.00 0.00 29.64 1.40
3166 10661 6.038714 CCAACTCTCAGGTGCCTTAATAATTC 59.961 42.308 0.00 0.00 29.64 2.17
3167 10662 5.685728 ACTCTCAGGTGCCTTAATAATTCC 58.314 41.667 0.00 0.00 0.00 3.01
3168 10663 5.191722 ACTCTCAGGTGCCTTAATAATTCCA 59.808 40.000 0.00 0.00 0.00 3.53
3169 10664 6.073447 TCTCAGGTGCCTTAATAATTCCAA 57.927 37.500 0.00 0.00 0.00 3.53
3170 10665 6.489603 TCTCAGGTGCCTTAATAATTCCAAA 58.510 36.000 0.00 0.00 0.00 3.28
3171 10666 7.125391 TCTCAGGTGCCTTAATAATTCCAAAT 58.875 34.615 0.00 0.00 0.00 2.32
3172 10667 7.068593 TCTCAGGTGCCTTAATAATTCCAAATG 59.931 37.037 0.00 0.00 0.00 2.32
3173 10668 6.098124 TCAGGTGCCTTAATAATTCCAAATGG 59.902 38.462 0.00 0.00 0.00 3.16
3174 10669 5.963865 AGGTGCCTTAATAATTCCAAATGGT 59.036 36.000 0.00 0.00 36.34 3.55
3175 10670 6.048509 GGTGCCTTAATAATTCCAAATGGTG 58.951 40.000 0.00 0.00 36.34 4.17
3176 10671 6.351796 GGTGCCTTAATAATTCCAAATGGTGT 60.352 38.462 0.00 0.00 36.34 4.16
3177 10672 7.147811 GGTGCCTTAATAATTCCAAATGGTGTA 60.148 37.037 0.00 0.00 36.34 2.90
3178 10673 8.421002 GTGCCTTAATAATTCCAAATGGTGTAT 58.579 33.333 0.00 0.00 36.34 2.29
3179 10674 8.986991 TGCCTTAATAATTCCAAATGGTGTATT 58.013 29.630 0.00 5.19 36.34 1.89
3185 10680 9.667607 AATAATTCCAAATGGTGTATTATCCCA 57.332 29.630 0.00 0.00 36.34 4.37
3186 10681 9.842196 ATAATTCCAAATGGTGTATTATCCCAT 57.158 29.630 0.00 0.00 40.68 4.00
3187 10682 6.975196 TTCCAAATGGTGTATTATCCCATG 57.025 37.500 0.00 0.00 38.93 3.66
3188 10683 5.392995 TCCAAATGGTGTATTATCCCATGG 58.607 41.667 4.14 4.14 38.93 3.66
3189 10684 4.021192 CCAAATGGTGTATTATCCCATGGC 60.021 45.833 6.09 0.00 38.93 4.40
3190 10685 2.969821 TGGTGTATTATCCCATGGCC 57.030 50.000 6.09 0.00 0.00 5.36
3191 10686 1.073125 TGGTGTATTATCCCATGGCCG 59.927 52.381 6.09 0.00 0.00 6.13
3192 10687 1.349688 GGTGTATTATCCCATGGCCGA 59.650 52.381 6.09 0.00 0.00 5.54
3193 10688 2.224670 GGTGTATTATCCCATGGCCGAA 60.225 50.000 6.09 0.00 0.00 4.30
3194 10689 2.812011 GTGTATTATCCCATGGCCGAAC 59.188 50.000 6.09 0.00 0.00 3.95
3195 10690 2.073816 GTATTATCCCATGGCCGAACG 58.926 52.381 6.09 0.00 0.00 3.95
3196 10691 0.472471 ATTATCCCATGGCCGAACGT 59.528 50.000 6.09 0.00 0.00 3.99
3197 10692 0.253610 TTATCCCATGGCCGAACGTT 59.746 50.000 6.09 0.00 0.00 3.99
3198 10693 0.462937 TATCCCATGGCCGAACGTTG 60.463 55.000 5.00 0.00 0.00 4.10
3199 10694 2.478335 ATCCCATGGCCGAACGTTGT 62.478 55.000 5.00 0.00 0.00 3.32
3200 10695 1.376166 CCCATGGCCGAACGTTGTA 60.376 57.895 5.00 0.00 0.00 2.41
3201 10696 0.956410 CCCATGGCCGAACGTTGTAA 60.956 55.000 5.00 0.00 0.00 2.41
3202 10697 1.091537 CCATGGCCGAACGTTGTAAT 58.908 50.000 5.00 0.00 0.00 1.89
3203 10698 1.063469 CCATGGCCGAACGTTGTAATC 59.937 52.381 5.00 0.00 0.00 1.75
3204 10699 2.006888 CATGGCCGAACGTTGTAATCT 58.993 47.619 5.00 0.00 0.00 2.40
3205 10700 1.717194 TGGCCGAACGTTGTAATCTC 58.283 50.000 5.00 0.00 0.00 2.75
3206 10701 1.004595 GGCCGAACGTTGTAATCTCC 58.995 55.000 5.00 0.00 0.00 3.71
3207 10702 1.405121 GGCCGAACGTTGTAATCTCCT 60.405 52.381 5.00 0.00 0.00 3.69
3208 10703 2.344025 GCCGAACGTTGTAATCTCCTT 58.656 47.619 5.00 0.00 0.00 3.36
3209 10704 2.740447 GCCGAACGTTGTAATCTCCTTT 59.260 45.455 5.00 0.00 0.00 3.11
3210 10705 3.424433 GCCGAACGTTGTAATCTCCTTTG 60.424 47.826 5.00 0.00 0.00 2.77
3211 10706 3.424433 CCGAACGTTGTAATCTCCTTTGC 60.424 47.826 5.00 0.00 0.00 3.68
3212 10707 3.185594 CGAACGTTGTAATCTCCTTTGCA 59.814 43.478 5.00 0.00 0.00 4.08
3213 10708 4.464112 GAACGTTGTAATCTCCTTTGCAC 58.536 43.478 5.00 0.00 0.00 4.57
3214 10709 2.812011 ACGTTGTAATCTCCTTTGCACC 59.188 45.455 0.00 0.00 0.00 5.01
3215 10710 3.074412 CGTTGTAATCTCCTTTGCACCT 58.926 45.455 0.00 0.00 0.00 4.00
3216 10711 4.250464 CGTTGTAATCTCCTTTGCACCTA 58.750 43.478 0.00 0.00 0.00 3.08
3217 10712 4.693566 CGTTGTAATCTCCTTTGCACCTAA 59.306 41.667 0.00 0.00 0.00 2.69
3218 10713 5.354234 CGTTGTAATCTCCTTTGCACCTAAT 59.646 40.000 0.00 0.00 0.00 1.73
3219 10714 6.555315 GTTGTAATCTCCTTTGCACCTAATG 58.445 40.000 0.00 0.00 0.00 1.90
3231 10726 3.855689 CACCTAATGCCCAACAAGAAG 57.144 47.619 0.00 0.00 0.00 2.85
3232 10727 3.157087 CACCTAATGCCCAACAAGAAGT 58.843 45.455 0.00 0.00 0.00 3.01
3233 10728 3.573967 CACCTAATGCCCAACAAGAAGTT 59.426 43.478 0.00 0.00 42.42 2.66
3234 10729 4.039124 CACCTAATGCCCAACAAGAAGTTT 59.961 41.667 0.00 0.00 38.74 2.66
3235 10730 4.039124 ACCTAATGCCCAACAAGAAGTTTG 59.961 41.667 0.00 0.00 38.74 2.93
3236 10731 4.039124 CCTAATGCCCAACAAGAAGTTTGT 59.961 41.667 0.00 0.00 38.74 2.83
3237 10732 2.957491 TGCCCAACAAGAAGTTTGTG 57.043 45.000 0.00 0.00 38.74 3.33
3238 10733 2.451490 TGCCCAACAAGAAGTTTGTGA 58.549 42.857 0.00 0.00 38.74 3.58
3239 10734 2.828520 TGCCCAACAAGAAGTTTGTGAA 59.171 40.909 0.00 0.00 38.74 3.18
3240 10735 3.259374 TGCCCAACAAGAAGTTTGTGAAA 59.741 39.130 0.00 0.00 38.74 2.69
3241 10736 4.249661 GCCCAACAAGAAGTTTGTGAAAA 58.750 39.130 0.00 0.00 38.74 2.29
3242 10737 4.693095 GCCCAACAAGAAGTTTGTGAAAAA 59.307 37.500 0.00 0.00 38.74 1.94
3265 10760 8.408043 AAAATGTGTGGAAATGTAGAAGATGA 57.592 30.769 0.00 0.00 0.00 2.92
3266 10761 6.992063 ATGTGTGGAAATGTAGAAGATGAC 57.008 37.500 0.00 0.00 0.00 3.06
3267 10762 4.929211 TGTGTGGAAATGTAGAAGATGACG 59.071 41.667 0.00 0.00 0.00 4.35
3268 10763 4.330074 GTGTGGAAATGTAGAAGATGACGG 59.670 45.833 0.00 0.00 0.00 4.79
3269 10764 3.309954 GTGGAAATGTAGAAGATGACGGC 59.690 47.826 0.00 0.00 0.00 5.68
3270 10765 2.540101 GGAAATGTAGAAGATGACGGCG 59.460 50.000 4.80 4.80 0.00 6.46
3271 10766 3.444916 GAAATGTAGAAGATGACGGCGA 58.555 45.455 16.62 0.00 0.00 5.54
3272 10767 3.520290 AATGTAGAAGATGACGGCGAA 57.480 42.857 16.62 0.57 0.00 4.70
3273 10768 2.273370 TGTAGAAGATGACGGCGAAC 57.727 50.000 16.62 7.98 0.00 3.95
3274 10769 1.542472 TGTAGAAGATGACGGCGAACA 59.458 47.619 16.62 14.08 0.00 3.18
3275 10770 2.186076 GTAGAAGATGACGGCGAACAG 58.814 52.381 16.62 0.00 0.00 3.16
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
94 7145 9.964354 TCCTTTTACCGCTGATAGTAGTATATA 57.036 33.333 0.00 0.00 0.00 0.86
95 7146 8.874744 TCCTTTTACCGCTGATAGTAGTATAT 57.125 34.615 0.00 0.00 0.00 0.86
124 7175 6.858993 GTGAGAGAAATATCGTCAGATACCAC 59.141 42.308 0.00 0.00 41.66 4.16
176 7232 2.172717 GCCTTTGGCTCCAGGAATAGTA 59.827 50.000 0.73 0.00 46.69 1.82
199 7255 4.393371 GCAAGACAGTCTACAAGGGATTTC 59.607 45.833 2.64 0.00 0.00 2.17
436 7496 8.857694 AAAAGACAAATATTTAGGAACGGAGA 57.142 30.769 0.00 0.00 0.00 3.71
471 7531 4.131649 TCCGTATGTGGTAGTCCATTTG 57.868 45.455 0.00 0.00 46.20 2.32
585 7645 6.710744 ACAAGCATAATTTATTACTCCCTCCG 59.289 38.462 0.00 0.00 0.00 4.63
698 7976 6.712095 TGACTTGACTCTTTGCAAATCTATGT 59.288 34.615 13.23 7.28 0.00 2.29
750 8029 4.380444 GGTGCCTTGATAATTTTTGAGCGA 60.380 41.667 0.00 0.00 0.00 4.93
751 8030 3.859386 GGTGCCTTGATAATTTTTGAGCG 59.141 43.478 0.00 0.00 0.00 5.03
752 8031 4.627035 GTGGTGCCTTGATAATTTTTGAGC 59.373 41.667 0.00 0.00 0.00 4.26
753 8032 5.170748 GGTGGTGCCTTGATAATTTTTGAG 58.829 41.667 0.00 0.00 0.00 3.02
754 8033 4.590647 TGGTGGTGCCTTGATAATTTTTGA 59.409 37.500 0.00 0.00 38.35 2.69
760 8041 2.726821 CTGTGGTGGTGCCTTGATAAT 58.273 47.619 0.00 0.00 38.35 1.28
767 8048 1.212375 TATATGCTGTGGTGGTGCCT 58.788 50.000 0.00 0.00 38.35 4.75
813 8094 5.497474 AGGTTAACTATGGCAAACTAGTGG 58.503 41.667 5.42 0.00 0.00 4.00
819 8100 7.602753 AGATTTCAAGGTTAACTATGGCAAAC 58.397 34.615 5.42 0.00 0.00 2.93
828 8109 6.434340 GTGGATGGAAGATTTCAAGGTTAACT 59.566 38.462 5.42 0.00 0.00 2.24
885 8166 1.047002 TGGGGGTGTTGCTCAATTTG 58.953 50.000 0.00 0.00 0.00 2.32
945 8226 4.586001 GTGGTGCAATGGAAGATGGATAAT 59.414 41.667 0.00 0.00 0.00 1.28
952 8233 3.087031 CTCAAGTGGTGCAATGGAAGAT 58.913 45.455 0.00 0.00 0.00 2.40
1221 8504 0.454600 CAAGAACGTAGCGGCCTCTA 59.545 55.000 0.00 0.00 0.00 2.43
1274 8572 3.713764 AGATAATGAGTGGCTTACCTGCT 59.286 43.478 0.00 0.00 36.63 4.24
1275 8573 3.812053 CAGATAATGAGTGGCTTACCTGC 59.188 47.826 0.00 0.00 36.63 4.85
1276 8574 3.812053 GCAGATAATGAGTGGCTTACCTG 59.188 47.826 0.00 0.00 36.63 4.00
1447 8784 7.765695 AGAAGAAAATAAACTCCTTCATGCA 57.234 32.000 0.00 0.00 36.59 3.96
1626 8966 2.169561 GCTCTTCCCTACTCTTCTTGGG 59.830 54.545 0.00 0.00 40.95 4.12
1976 9436 3.879295 CCAACAAGCTTCTTGACAGAGAA 59.121 43.478 15.20 0.00 34.63 2.87
2030 9490 1.223487 GGATGCTCGCCAGGGTTTA 59.777 57.895 0.00 0.00 0.00 2.01
2053 9513 2.777114 TCTCCATAGCCATACTTGCCAA 59.223 45.455 0.00 0.00 0.00 4.52
2060 9520 3.601443 AAGCGATCTCCATAGCCATAC 57.399 47.619 0.00 0.00 31.18 2.39
2061 9521 3.306989 CCAAAGCGATCTCCATAGCCATA 60.307 47.826 0.00 0.00 31.18 2.74
2109 9569 1.485066 AGTAACCCAGCAACGATAGGG 59.515 52.381 0.00 0.00 46.96 3.53
2111 9571 1.933853 GCAGTAACCCAGCAACGATAG 59.066 52.381 0.00 0.00 46.19 2.08
2134 9594 4.259970 CCAGAATCGAGCATTGAAGTTACG 60.260 45.833 0.00 0.00 28.09 3.18
2135 9595 4.494855 GCCAGAATCGAGCATTGAAGTTAC 60.495 45.833 0.00 0.00 28.09 2.50
2164 9624 4.023707 ACTTGCTCTTACACATTCAGCAAC 60.024 41.667 0.58 0.00 43.45 4.17
2167 9627 5.862924 TTACTTGCTCTTACACATTCAGC 57.137 39.130 0.00 0.00 0.00 4.26
2168 9628 7.171508 TCTGTTTACTTGCTCTTACACATTCAG 59.828 37.037 0.00 0.00 0.00 3.02
2185 9645 3.402628 AAGGCGATGTGTCTGTTTACT 57.597 42.857 0.00 0.00 28.45 2.24
2186 9646 4.630069 ACATAAGGCGATGTGTCTGTTTAC 59.370 41.667 7.20 0.00 38.64 2.01
2213 9673 4.028993 AGGCGATGTCCTTTCCTAAAAA 57.971 40.909 0.00 0.00 30.82 1.94
2214 9674 3.713826 AGGCGATGTCCTTTCCTAAAA 57.286 42.857 0.00 0.00 30.82 1.52
2215 9675 3.713826 AAGGCGATGTCCTTTCCTAAA 57.286 42.857 0.00 0.00 43.62 1.85
2216 9676 3.773119 ACTAAGGCGATGTCCTTTCCTAA 59.227 43.478 0.00 0.00 43.62 2.69
2217 9677 3.371965 ACTAAGGCGATGTCCTTTCCTA 58.628 45.455 0.00 0.00 43.62 2.94
2218 9678 2.188817 ACTAAGGCGATGTCCTTTCCT 58.811 47.619 0.00 0.00 43.62 3.36
2219 9679 2.693267 ACTAAGGCGATGTCCTTTCC 57.307 50.000 0.00 0.00 43.62 3.13
2220 9680 4.000988 TCAAACTAAGGCGATGTCCTTTC 58.999 43.478 0.00 0.00 43.62 2.62
2221 9681 3.751698 GTCAAACTAAGGCGATGTCCTTT 59.248 43.478 0.00 0.00 43.62 3.11
2223 9683 2.354805 GGTCAAACTAAGGCGATGTCCT 60.355 50.000 0.00 0.00 38.31 3.85
2224 9684 2.007608 GGTCAAACTAAGGCGATGTCC 58.992 52.381 0.00 0.00 0.00 4.02
2225 9685 2.673368 CTGGTCAAACTAAGGCGATGTC 59.327 50.000 0.00 0.00 0.00 3.06
2226 9686 2.699954 CTGGTCAAACTAAGGCGATGT 58.300 47.619 0.00 0.00 0.00 3.06
2227 9687 1.398390 GCTGGTCAAACTAAGGCGATG 59.602 52.381 0.00 0.00 0.00 3.84
2228 9688 1.003118 TGCTGGTCAAACTAAGGCGAT 59.997 47.619 0.00 0.00 0.00 4.58
2229 9689 0.394938 TGCTGGTCAAACTAAGGCGA 59.605 50.000 0.00 0.00 0.00 5.54
2230 9690 0.517316 GTGCTGGTCAAACTAAGGCG 59.483 55.000 0.00 0.00 0.00 5.52
2231 9691 0.881796 GGTGCTGGTCAAACTAAGGC 59.118 55.000 0.00 0.00 0.00 4.35
2232 9692 1.202879 TGGGTGCTGGTCAAACTAAGG 60.203 52.381 0.00 0.00 0.00 2.69
2233 9693 2.270352 TGGGTGCTGGTCAAACTAAG 57.730 50.000 0.00 0.00 0.00 2.18
2234 9694 2.691011 GTTTGGGTGCTGGTCAAACTAA 59.309 45.455 9.91 0.00 43.80 2.24
2235 9695 2.303175 GTTTGGGTGCTGGTCAAACTA 58.697 47.619 9.91 0.00 43.80 2.24
2236 9696 1.111277 GTTTGGGTGCTGGTCAAACT 58.889 50.000 9.91 0.00 43.80 2.66
2237 9697 0.104120 GGTTTGGGTGCTGGTCAAAC 59.896 55.000 8.98 8.98 45.38 2.93
2238 9698 0.032615 AGGTTTGGGTGCTGGTCAAA 60.033 50.000 0.00 0.00 0.00 2.69
2239 9699 0.032615 AAGGTTTGGGTGCTGGTCAA 60.033 50.000 0.00 0.00 0.00 3.18
2240 9700 0.467290 GAAGGTTTGGGTGCTGGTCA 60.467 55.000 0.00 0.00 0.00 4.02
2299 9759 6.240894 ACCAAGAAATATCTGCAGTTCTTCA 58.759 36.000 21.05 0.44 39.96 3.02
2305 9765 3.375299 GCGAACCAAGAAATATCTGCAGT 59.625 43.478 14.67 3.75 35.59 4.40
2307 9767 3.342719 TGCGAACCAAGAAATATCTGCA 58.657 40.909 0.00 0.00 35.59 4.41
2325 9785 5.985530 TGGAATCTTACTGATGATAGTTGCG 59.014 40.000 0.00 0.00 35.21 4.85
2384 9847 1.001633 GTACCACCACGTCCTGACATT 59.998 52.381 0.00 0.00 0.00 2.71
2387 9850 0.319297 GTGTACCACCACGTCCTGAC 60.319 60.000 0.00 0.00 0.00 3.51
2389 9852 1.068055 GTAGTGTACCACCACGTCCTG 60.068 57.143 0.00 0.00 40.33 3.86
2417 9880 3.010472 TCCATCCAAGAGCCTCAAATTCA 59.990 43.478 0.00 0.00 0.00 2.57
2448 9911 4.130719 TGTGGTTGTAGTAGGGAGGTAA 57.869 45.455 0.00 0.00 0.00 2.85
2466 9929 3.940852 TGCATCTTACAGCTTACCATGTG 59.059 43.478 0.00 0.00 0.00 3.21
2541 10004 7.914871 CAGACAACATGTTACTCAAATCAAACA 59.085 33.333 11.53 0.00 36.37 2.83
2542 10005 7.915397 ACAGACAACATGTTACTCAAATCAAAC 59.085 33.333 11.53 0.00 0.00 2.93
2693 10164 5.422214 AACTCTGAAAGTACATACCCAGG 57.578 43.478 0.00 0.00 37.17 4.45
2694 10165 6.338937 GGTAACTCTGAAAGTACATACCCAG 58.661 44.000 0.00 0.00 37.17 4.45
2698 10169 5.958955 ACCGGTAACTCTGAAAGTACATAC 58.041 41.667 4.49 0.00 37.17 2.39
2715 10186 6.110707 GTCTTGGATTCTAATTCAACCGGTA 58.889 40.000 8.00 0.00 30.87 4.02
2768 10256 4.820173 CCCACATGATACGTACAGAGACTA 59.180 45.833 0.00 0.00 0.00 2.59
2769 10257 3.632604 CCCACATGATACGTACAGAGACT 59.367 47.826 0.00 0.00 0.00 3.24
2770 10258 3.380637 ACCCACATGATACGTACAGAGAC 59.619 47.826 0.00 0.00 0.00 3.36
2771 10259 3.628008 ACCCACATGATACGTACAGAGA 58.372 45.455 0.00 0.00 0.00 3.10
2772 10260 4.579340 AGTACCCACATGATACGTACAGAG 59.421 45.833 0.00 0.00 33.34 3.35
2800 10288 6.682861 GCCCAATTATTACAAGGCTTAGGTTG 60.683 42.308 0.00 0.00 37.42 3.77
2818 10309 3.849527 ACTCTTTCCTTCAAGCCCAATT 58.150 40.909 0.00 0.00 0.00 2.32
2819 10310 3.532641 ACTCTTTCCTTCAAGCCCAAT 57.467 42.857 0.00 0.00 0.00 3.16
2824 10315 7.497925 TTTTTCTCTACTCTTTCCTTCAAGC 57.502 36.000 0.00 0.00 0.00 4.01
2832 10323 5.010282 TGGGGCATTTTTCTCTACTCTTTC 58.990 41.667 0.00 0.00 0.00 2.62
2837 10328 3.806949 TGTGGGGCATTTTTCTCTACT 57.193 42.857 0.00 0.00 0.00 2.57
2856 10349 6.849502 ACACATATCAGAAACAGAGCAAATG 58.150 36.000 0.00 0.00 0.00 2.32
2875 10368 3.822735 CCAAGGATCAAACACAGACACAT 59.177 43.478 0.00 0.00 0.00 3.21
2881 10374 0.523072 CGCCCAAGGATCAAACACAG 59.477 55.000 0.00 0.00 0.00 3.66
2886 10379 0.887933 GCTTTCGCCCAAGGATCAAA 59.112 50.000 0.00 0.00 0.00 2.69
2951 10446 6.758416 GGTCTTCAAATTCAGCAAGACTTTTT 59.242 34.615 9.80 0.00 42.91 1.94
2952 10447 6.127366 TGGTCTTCAAATTCAGCAAGACTTTT 60.127 34.615 9.80 0.00 42.91 2.27
2953 10448 5.360714 TGGTCTTCAAATTCAGCAAGACTTT 59.639 36.000 9.80 0.42 42.91 2.66
2954 10449 4.889409 TGGTCTTCAAATTCAGCAAGACTT 59.111 37.500 9.80 0.00 42.91 3.01
2955 10450 4.464008 TGGTCTTCAAATTCAGCAAGACT 58.536 39.130 9.80 0.00 42.91 3.24
2956 10451 4.516698 TCTGGTCTTCAAATTCAGCAAGAC 59.483 41.667 2.64 2.64 42.70 3.01
2957 10452 4.717877 TCTGGTCTTCAAATTCAGCAAGA 58.282 39.130 0.00 0.00 0.00 3.02
2958 10453 5.443185 TTCTGGTCTTCAAATTCAGCAAG 57.557 39.130 0.00 0.00 0.00 4.01
2960 10455 5.132502 TCTTTCTGGTCTTCAAATTCAGCA 58.867 37.500 0.00 0.00 0.00 4.41
2961 10456 5.695851 TCTTTCTGGTCTTCAAATTCAGC 57.304 39.130 0.00 0.00 0.00 4.26
2962 10457 7.967303 GCTTATCTTTCTGGTCTTCAAATTCAG 59.033 37.037 0.00 0.00 0.00 3.02
2963 10458 7.667219 AGCTTATCTTTCTGGTCTTCAAATTCA 59.333 33.333 0.00 0.00 0.00 2.57
2965 10460 7.094032 CCAGCTTATCTTTCTGGTCTTCAAATT 60.094 37.037 0.00 0.00 41.76 1.82
2966 10461 6.376581 CCAGCTTATCTTTCTGGTCTTCAAAT 59.623 38.462 0.00 0.00 41.76 2.32
2967 10462 5.707298 CCAGCTTATCTTTCTGGTCTTCAAA 59.293 40.000 0.00 0.00 41.76 2.69
2968 10463 5.013079 TCCAGCTTATCTTTCTGGTCTTCAA 59.987 40.000 7.31 0.00 45.67 2.69
2969 10464 4.532126 TCCAGCTTATCTTTCTGGTCTTCA 59.468 41.667 7.31 0.00 45.67 3.02
2970 10465 5.091261 TCCAGCTTATCTTTCTGGTCTTC 57.909 43.478 7.31 0.00 45.67 2.87
2975 10470 2.939103 CCGTTCCAGCTTATCTTTCTGG 59.061 50.000 1.29 1.29 46.60 3.86
2983 10478 1.413077 GCTACTCCCGTTCCAGCTTAT 59.587 52.381 0.00 0.00 0.00 1.73
2987 10482 2.202756 CGCTACTCCCGTTCCAGC 60.203 66.667 0.00 0.00 0.00 4.85
2994 10489 2.588877 CATTGCCCGCTACTCCCG 60.589 66.667 0.00 0.00 0.00 5.14
3003 10498 1.731433 CCTCCTCAATGCATTGCCCG 61.731 60.000 30.57 20.79 37.68 6.13
3004 10499 0.685458 ACCTCCTCAATGCATTGCCC 60.685 55.000 30.57 0.00 37.68 5.36
3005 10500 2.057137 TACCTCCTCAATGCATTGCC 57.943 50.000 30.57 0.00 37.68 4.52
3006 10501 2.223340 CGTTACCTCCTCAATGCATTGC 60.223 50.000 30.57 14.47 37.68 3.56
3007 10502 3.270027 TCGTTACCTCCTCAATGCATTG 58.730 45.455 29.75 29.75 39.10 2.82
3008 10503 3.627395 TCGTTACCTCCTCAATGCATT 57.373 42.857 5.99 5.99 0.00 3.56
3009 10504 3.845781 ATCGTTACCTCCTCAATGCAT 57.154 42.857 0.00 0.00 0.00 3.96
3010 10505 4.746535 TTATCGTTACCTCCTCAATGCA 57.253 40.909 0.00 0.00 0.00 3.96
3011 10506 7.656137 TCTTTATTATCGTTACCTCCTCAATGC 59.344 37.037 0.00 0.00 0.00 3.56
3012 10507 9.197694 CTCTTTATTATCGTTACCTCCTCAATG 57.802 37.037 0.00 0.00 0.00 2.82
3013 10508 7.873505 GCTCTTTATTATCGTTACCTCCTCAAT 59.126 37.037 0.00 0.00 0.00 2.57
3014 10509 7.208080 GCTCTTTATTATCGTTACCTCCTCAA 58.792 38.462 0.00 0.00 0.00 3.02
3015 10510 6.239232 GGCTCTTTATTATCGTTACCTCCTCA 60.239 42.308 0.00 0.00 0.00 3.86
3016 10511 6.157904 GGCTCTTTATTATCGTTACCTCCTC 58.842 44.000 0.00 0.00 0.00 3.71
3017 10512 5.011840 GGGCTCTTTATTATCGTTACCTCCT 59.988 44.000 0.00 0.00 0.00 3.69
3018 10513 5.221581 TGGGCTCTTTATTATCGTTACCTCC 60.222 44.000 0.00 0.00 0.00 4.30
3019 10514 5.850614 TGGGCTCTTTATTATCGTTACCTC 58.149 41.667 0.00 0.00 0.00 3.85
3020 10515 5.881923 TGGGCTCTTTATTATCGTTACCT 57.118 39.130 0.00 0.00 0.00 3.08
3021 10516 6.228258 TCATGGGCTCTTTATTATCGTTACC 58.772 40.000 0.00 0.00 0.00 2.85
3022 10517 6.128526 GCTCATGGGCTCTTTATTATCGTTAC 60.129 42.308 11.30 0.00 0.00 2.50
3023 10518 5.932303 GCTCATGGGCTCTTTATTATCGTTA 59.068 40.000 11.30 0.00 0.00 3.18
3024 10519 4.757149 GCTCATGGGCTCTTTATTATCGTT 59.243 41.667 11.30 0.00 0.00 3.85
3025 10520 4.040952 AGCTCATGGGCTCTTTATTATCGT 59.959 41.667 16.33 0.00 38.24 3.73
3026 10521 4.391216 CAGCTCATGGGCTCTTTATTATCG 59.609 45.833 19.76 0.00 41.00 2.92
3027 10522 5.555017 TCAGCTCATGGGCTCTTTATTATC 58.445 41.667 19.76 0.00 41.00 1.75
3028 10523 5.558818 CTCAGCTCATGGGCTCTTTATTAT 58.441 41.667 19.76 0.00 41.00 1.28
3029 10524 4.965814 CTCAGCTCATGGGCTCTTTATTA 58.034 43.478 19.76 0.00 41.00 0.98
3030 10525 3.818180 CTCAGCTCATGGGCTCTTTATT 58.182 45.455 19.76 0.00 41.00 1.40
3031 10526 3.488778 CTCAGCTCATGGGCTCTTTAT 57.511 47.619 19.76 0.00 41.00 1.40
3032 10527 2.996249 CTCAGCTCATGGGCTCTTTA 57.004 50.000 19.76 2.48 41.00 1.85
3033 10528 3.877951 CTCAGCTCATGGGCTCTTT 57.122 52.632 19.76 0.00 41.00 2.52
3039 10534 0.752009 AATGCAGCTCAGCTCATGGG 60.752 55.000 0.00 0.00 36.40 4.00
3040 10535 1.103803 AAATGCAGCTCAGCTCATGG 58.896 50.000 0.00 0.00 36.40 3.66
3041 10536 2.423892 AGAAAATGCAGCTCAGCTCATG 59.576 45.455 0.00 0.00 36.40 3.07
3042 10537 2.724454 AGAAAATGCAGCTCAGCTCAT 58.276 42.857 0.00 0.41 36.40 2.90
3043 10538 2.195741 AGAAAATGCAGCTCAGCTCA 57.804 45.000 0.00 0.00 36.40 4.26
3044 10539 4.128643 AGATAGAAAATGCAGCTCAGCTC 58.871 43.478 0.00 0.00 36.40 4.09
3045 10540 4.153673 AGATAGAAAATGCAGCTCAGCT 57.846 40.909 0.00 0.00 40.77 4.24
3046 10541 4.897025 AAGATAGAAAATGCAGCTCAGC 57.103 40.909 0.00 0.00 0.00 4.26
3047 10542 5.356190 TCCAAAGATAGAAAATGCAGCTCAG 59.644 40.000 0.00 0.00 0.00 3.35
3048 10543 5.124457 GTCCAAAGATAGAAAATGCAGCTCA 59.876 40.000 0.00 0.00 0.00 4.26
3049 10544 5.356470 AGTCCAAAGATAGAAAATGCAGCTC 59.644 40.000 0.00 0.00 0.00 4.09
3050 10545 5.259632 AGTCCAAAGATAGAAAATGCAGCT 58.740 37.500 0.00 0.00 0.00 4.24
3051 10546 5.573337 AGTCCAAAGATAGAAAATGCAGC 57.427 39.130 0.00 0.00 0.00 5.25
3052 10547 7.149569 TCAAGTCCAAAGATAGAAAATGCAG 57.850 36.000 0.00 0.00 0.00 4.41
3053 10548 7.014134 TGTTCAAGTCCAAAGATAGAAAATGCA 59.986 33.333 0.00 0.00 0.00 3.96
3054 10549 7.370383 TGTTCAAGTCCAAAGATAGAAAATGC 58.630 34.615 0.00 0.00 0.00 3.56
3055 10550 9.748708 TTTGTTCAAGTCCAAAGATAGAAAATG 57.251 29.630 0.00 0.00 0.00 2.32
3080 10575 8.927411 CCCCATTAATGTATCAGATTCCTTTTT 58.073 33.333 14.25 0.00 0.00 1.94
3081 10576 8.288812 TCCCCATTAATGTATCAGATTCCTTTT 58.711 33.333 14.25 0.00 0.00 2.27
3082 10577 7.825709 TCCCCATTAATGTATCAGATTCCTTT 58.174 34.615 14.25 0.00 0.00 3.11
3083 10578 7.295672 TCTCCCCATTAATGTATCAGATTCCTT 59.704 37.037 14.25 0.00 0.00 3.36
3084 10579 6.794493 TCTCCCCATTAATGTATCAGATTCCT 59.206 38.462 14.25 0.00 0.00 3.36
3085 10580 7.020827 TCTCCCCATTAATGTATCAGATTCC 57.979 40.000 14.25 0.00 0.00 3.01
3086 10581 8.160106 ACTTCTCCCCATTAATGTATCAGATTC 58.840 37.037 14.25 0.00 0.00 2.52
3087 10582 8.050316 ACTTCTCCCCATTAATGTATCAGATT 57.950 34.615 14.25 0.00 0.00 2.40
3088 10583 7.639062 ACTTCTCCCCATTAATGTATCAGAT 57.361 36.000 14.25 0.00 0.00 2.90
3089 10584 8.561536 TTACTTCTCCCCATTAATGTATCAGA 57.438 34.615 14.25 7.03 0.00 3.27
3090 10585 9.627123 TTTTACTTCTCCCCATTAATGTATCAG 57.373 33.333 14.25 4.97 0.00 2.90
3091 10586 9.983024 TTTTTACTTCTCCCCATTAATGTATCA 57.017 29.630 14.25 0.00 0.00 2.15
3114 10609 4.215109 ACAGACCCACACTAGCAATTTTT 58.785 39.130 0.00 0.00 0.00 1.94
3115 10610 3.832527 ACAGACCCACACTAGCAATTTT 58.167 40.909 0.00 0.00 0.00 1.82
3116 10611 3.508845 ACAGACCCACACTAGCAATTT 57.491 42.857 0.00 0.00 0.00 1.82
3117 10612 4.517285 CATACAGACCCACACTAGCAATT 58.483 43.478 0.00 0.00 0.00 2.32
3118 10613 3.682718 GCATACAGACCCACACTAGCAAT 60.683 47.826 0.00 0.00 0.00 3.56
3119 10614 2.354704 GCATACAGACCCACACTAGCAA 60.355 50.000 0.00 0.00 0.00 3.91
3120 10615 1.207089 GCATACAGACCCACACTAGCA 59.793 52.381 0.00 0.00 0.00 3.49
3121 10616 1.473434 GGCATACAGACCCACACTAGC 60.473 57.143 0.00 0.00 0.00 3.42
3122 10617 1.139058 GGGCATACAGACCCACACTAG 59.861 57.143 0.00 0.00 46.22 2.57
3123 10618 1.200519 GGGCATACAGACCCACACTA 58.799 55.000 0.00 0.00 46.22 2.74
3124 10619 1.991230 GGGCATACAGACCCACACT 59.009 57.895 0.00 0.00 46.22 3.55
3125 10620 4.637771 GGGCATACAGACCCACAC 57.362 61.111 0.00 0.00 46.22 3.82
3131 10626 2.419297 CCTGAGAGTTGGGCATACAGAC 60.419 54.545 0.00 0.00 0.00 3.51
3132 10627 1.833630 CCTGAGAGTTGGGCATACAGA 59.166 52.381 0.00 0.00 0.00 3.41
3133 10628 1.556911 ACCTGAGAGTTGGGCATACAG 59.443 52.381 0.00 0.00 0.00 2.74
3134 10629 1.278985 CACCTGAGAGTTGGGCATACA 59.721 52.381 0.00 0.00 0.00 2.29
3135 10630 2.014068 GCACCTGAGAGTTGGGCATAC 61.014 57.143 0.00 0.00 0.00 2.39
3136 10631 0.253044 GCACCTGAGAGTTGGGCATA 59.747 55.000 0.00 0.00 0.00 3.14
3137 10632 1.001641 GCACCTGAGAGTTGGGCAT 60.002 57.895 0.00 0.00 0.00 4.40
3138 10633 2.431683 GCACCTGAGAGTTGGGCA 59.568 61.111 0.00 0.00 0.00 5.36
3139 10634 2.360475 GGCACCTGAGAGTTGGGC 60.360 66.667 0.00 0.00 0.00 5.36
3140 10635 0.984230 TAAGGCACCTGAGAGTTGGG 59.016 55.000 0.00 0.00 0.00 4.12
3141 10636 2.859165 TTAAGGCACCTGAGAGTTGG 57.141 50.000 0.00 0.00 0.00 3.77
3142 10637 6.038714 GGAATTATTAAGGCACCTGAGAGTTG 59.961 42.308 0.00 0.00 0.00 3.16
3143 10638 6.122964 GGAATTATTAAGGCACCTGAGAGTT 58.877 40.000 0.00 0.00 0.00 3.01
3144 10639 5.191722 TGGAATTATTAAGGCACCTGAGAGT 59.808 40.000 0.00 0.00 0.00 3.24
3145 10640 5.684704 TGGAATTATTAAGGCACCTGAGAG 58.315 41.667 0.00 0.00 0.00 3.20
3146 10641 5.708736 TGGAATTATTAAGGCACCTGAGA 57.291 39.130 0.00 0.00 0.00 3.27
3147 10642 6.773976 TTTGGAATTATTAAGGCACCTGAG 57.226 37.500 0.00 0.00 0.00 3.35
3148 10643 6.098124 CCATTTGGAATTATTAAGGCACCTGA 59.902 38.462 0.00 0.00 37.39 3.86
3149 10644 6.127083 ACCATTTGGAATTATTAAGGCACCTG 60.127 38.462 3.01 0.00 38.94 4.00
3150 10645 5.963865 ACCATTTGGAATTATTAAGGCACCT 59.036 36.000 3.01 0.00 38.94 4.00
3151 10646 6.048509 CACCATTTGGAATTATTAAGGCACC 58.951 40.000 3.01 0.00 38.94 5.01
3152 10647 6.639563 ACACCATTTGGAATTATTAAGGCAC 58.360 36.000 3.01 0.00 38.94 5.01
3153 10648 6.865834 ACACCATTTGGAATTATTAAGGCA 57.134 33.333 3.01 0.00 38.94 4.75
3159 10654 9.667607 TGGGATAATACACCATTTGGAATTATT 57.332 29.630 3.01 5.70 38.94 1.40
3160 10655 9.842196 ATGGGATAATACACCATTTGGAATTAT 57.158 29.630 3.01 9.24 42.08 1.28
3161 10656 9.087871 CATGGGATAATACACCATTTGGAATTA 57.912 33.333 3.01 5.22 42.08 1.40
3162 10657 7.016465 CCATGGGATAATACACCATTTGGAATT 59.984 37.037 2.85 3.28 42.08 2.17
3163 10658 6.497954 CCATGGGATAATACACCATTTGGAAT 59.502 38.462 2.85 0.00 42.08 3.01
3164 10659 5.837979 CCATGGGATAATACACCATTTGGAA 59.162 40.000 2.85 0.00 42.08 3.53
3165 10660 5.392995 CCATGGGATAATACACCATTTGGA 58.607 41.667 2.85 0.00 42.08 3.53
3166 10661 4.021192 GCCATGGGATAATACACCATTTGG 60.021 45.833 15.13 0.00 42.08 3.28
3167 10662 4.021192 GGCCATGGGATAATACACCATTTG 60.021 45.833 15.13 0.00 42.08 2.32
3168 10663 4.159557 GGCCATGGGATAATACACCATTT 58.840 43.478 15.13 0.00 42.08 2.32
3169 10664 3.778265 GGCCATGGGATAATACACCATT 58.222 45.455 15.13 0.00 42.08 3.16
3170 10665 2.290896 CGGCCATGGGATAATACACCAT 60.291 50.000 15.13 0.00 45.48 3.55
3171 10666 1.073125 CGGCCATGGGATAATACACCA 59.927 52.381 15.13 0.00 38.88 4.17
3172 10667 1.349688 TCGGCCATGGGATAATACACC 59.650 52.381 15.13 1.21 0.00 4.16
3173 10668 2.812011 GTTCGGCCATGGGATAATACAC 59.188 50.000 15.13 0.00 0.00 2.90
3174 10669 2.549134 CGTTCGGCCATGGGATAATACA 60.549 50.000 15.13 0.00 0.00 2.29
3175 10670 2.073816 CGTTCGGCCATGGGATAATAC 58.926 52.381 15.13 0.00 0.00 1.89
3176 10671 1.695242 ACGTTCGGCCATGGGATAATA 59.305 47.619 15.13 0.00 0.00 0.98
3177 10672 0.472471 ACGTTCGGCCATGGGATAAT 59.528 50.000 15.13 0.00 0.00 1.28
3178 10673 0.253610 AACGTTCGGCCATGGGATAA 59.746 50.000 15.13 0.00 0.00 1.75
3179 10674 0.462937 CAACGTTCGGCCATGGGATA 60.463 55.000 15.13 0.00 0.00 2.59
3180 10675 1.748879 CAACGTTCGGCCATGGGAT 60.749 57.895 15.13 0.00 0.00 3.85
3181 10676 1.828461 TACAACGTTCGGCCATGGGA 61.828 55.000 15.13 0.00 0.00 4.37
3182 10677 0.956410 TTACAACGTTCGGCCATGGG 60.956 55.000 15.13 0.00 0.00 4.00
3183 10678 1.063469 GATTACAACGTTCGGCCATGG 59.937 52.381 7.63 7.63 0.00 3.66
3184 10679 2.006888 AGATTACAACGTTCGGCCATG 58.993 47.619 2.24 0.00 0.00 3.66
3185 10680 2.277084 GAGATTACAACGTTCGGCCAT 58.723 47.619 2.24 0.00 0.00 4.40
3186 10681 1.673626 GGAGATTACAACGTTCGGCCA 60.674 52.381 2.24 0.00 0.00 5.36
3187 10682 1.004595 GGAGATTACAACGTTCGGCC 58.995 55.000 0.00 0.00 0.00 6.13
3188 10683 2.005971 AGGAGATTACAACGTTCGGC 57.994 50.000 0.00 0.00 0.00 5.54
3189 10684 3.424433 GCAAAGGAGATTACAACGTTCGG 60.424 47.826 0.00 0.00 0.00 4.30
3190 10685 3.185594 TGCAAAGGAGATTACAACGTTCG 59.814 43.478 0.00 0.00 0.00 3.95
3191 10686 4.464112 GTGCAAAGGAGATTACAACGTTC 58.536 43.478 0.00 0.00 0.00 3.95
3192 10687 3.252458 GGTGCAAAGGAGATTACAACGTT 59.748 43.478 0.00 0.00 0.00 3.99
3193 10688 2.812011 GGTGCAAAGGAGATTACAACGT 59.188 45.455 0.00 0.00 0.00 3.99
3194 10689 3.074412 AGGTGCAAAGGAGATTACAACG 58.926 45.455 0.00 0.00 0.00 4.10
3195 10690 6.555315 CATTAGGTGCAAAGGAGATTACAAC 58.445 40.000 0.00 0.00 0.00 3.32
3196 10691 6.757897 CATTAGGTGCAAAGGAGATTACAA 57.242 37.500 0.00 0.00 0.00 2.41
3210 10705 6.065495 AACTTCTTGTTGGGCATTAGGTGC 62.065 45.833 0.00 0.00 44.49 5.01
3211 10706 3.157087 ACTTCTTGTTGGGCATTAGGTG 58.843 45.455 0.00 0.00 0.00 4.00
3212 10707 3.525800 ACTTCTTGTTGGGCATTAGGT 57.474 42.857 0.00 0.00 0.00 3.08
3213 10708 4.039124 ACAAACTTCTTGTTGGGCATTAGG 59.961 41.667 0.00 0.00 39.13 2.69
3214 10709 4.984161 CACAAACTTCTTGTTGGGCATTAG 59.016 41.667 0.00 0.00 39.13 1.73
3215 10710 4.646945 TCACAAACTTCTTGTTGGGCATTA 59.353 37.500 0.00 0.00 39.13 1.90
3216 10711 3.450457 TCACAAACTTCTTGTTGGGCATT 59.550 39.130 0.00 0.00 39.13 3.56
3217 10712 3.030291 TCACAAACTTCTTGTTGGGCAT 58.970 40.909 0.00 0.00 39.13 4.40
3218 10713 2.451490 TCACAAACTTCTTGTTGGGCA 58.549 42.857 0.00 0.00 39.13 5.36
3219 10714 3.518634 TTCACAAACTTCTTGTTGGGC 57.481 42.857 0.00 0.00 39.13 5.36
3239 10734 8.859090 TCATCTTCTACATTTCCACACATTTTT 58.141 29.630 0.00 0.00 0.00 1.94
3240 10735 8.299570 GTCATCTTCTACATTTCCACACATTTT 58.700 33.333 0.00 0.00 0.00 1.82
3241 10736 7.361201 CGTCATCTTCTACATTTCCACACATTT 60.361 37.037 0.00 0.00 0.00 2.32
3242 10737 6.092670 CGTCATCTTCTACATTTCCACACATT 59.907 38.462 0.00 0.00 0.00 2.71
3243 10738 5.582269 CGTCATCTTCTACATTTCCACACAT 59.418 40.000 0.00 0.00 0.00 3.21
3244 10739 4.929211 CGTCATCTTCTACATTTCCACACA 59.071 41.667 0.00 0.00 0.00 3.72
3245 10740 4.330074 CCGTCATCTTCTACATTTCCACAC 59.670 45.833 0.00 0.00 0.00 3.82
3246 10741 4.503910 CCGTCATCTTCTACATTTCCACA 58.496 43.478 0.00 0.00 0.00 4.17
3247 10742 3.309954 GCCGTCATCTTCTACATTTCCAC 59.690 47.826 0.00 0.00 0.00 4.02
3248 10743 3.531538 GCCGTCATCTTCTACATTTCCA 58.468 45.455 0.00 0.00 0.00 3.53
3249 10744 2.540101 CGCCGTCATCTTCTACATTTCC 59.460 50.000 0.00 0.00 0.00 3.13
3250 10745 3.444916 TCGCCGTCATCTTCTACATTTC 58.555 45.455 0.00 0.00 0.00 2.17
3251 10746 3.520290 TCGCCGTCATCTTCTACATTT 57.480 42.857 0.00 0.00 0.00 2.32
3252 10747 3.187700 GTTCGCCGTCATCTTCTACATT 58.812 45.455 0.00 0.00 0.00 2.71
3253 10748 2.165641 TGTTCGCCGTCATCTTCTACAT 59.834 45.455 0.00 0.00 0.00 2.29
3254 10749 1.542472 TGTTCGCCGTCATCTTCTACA 59.458 47.619 0.00 0.00 0.00 2.74
3255 10750 2.186076 CTGTTCGCCGTCATCTTCTAC 58.814 52.381 0.00 0.00 0.00 2.59
3256 10751 1.469251 GCTGTTCGCCGTCATCTTCTA 60.469 52.381 0.00 0.00 0.00 2.10
3257 10752 0.737715 GCTGTTCGCCGTCATCTTCT 60.738 55.000 0.00 0.00 0.00 2.85
3258 10753 1.710339 GCTGTTCGCCGTCATCTTC 59.290 57.895 0.00 0.00 0.00 2.87
3259 10754 2.094659 CGCTGTTCGCCGTCATCTT 61.095 57.895 0.00 0.00 34.21 2.40
3260 10755 2.507102 CGCTGTTCGCCGTCATCT 60.507 61.111 0.00 0.00 34.21 2.90
3261 10756 2.506217 TCGCTGTTCGCCGTCATC 60.506 61.111 0.00 0.00 38.27 2.92
3262 10757 2.507102 CTCGCTGTTCGCCGTCAT 60.507 61.111 0.00 0.00 38.27 3.06
3263 10758 2.964438 AAACTCGCTGTTCGCCGTCA 62.964 55.000 0.00 0.00 38.03 4.35
3264 10759 1.005294 TAAACTCGCTGTTCGCCGTC 61.005 55.000 0.00 0.00 38.03 4.79
3265 10760 0.389426 ATAAACTCGCTGTTCGCCGT 60.389 50.000 0.00 0.00 38.03 5.68
3266 10761 0.297820 GATAAACTCGCTGTTCGCCG 59.702 55.000 0.00 0.00 38.03 6.46
3267 10762 0.297820 CGATAAACTCGCTGTTCGCC 59.702 55.000 0.00 0.00 41.14 5.54
3268 10763 0.297820 CCGATAAACTCGCTGTTCGC 59.702 55.000 0.00 0.00 46.25 4.70
3269 10764 1.904144 TCCGATAAACTCGCTGTTCG 58.096 50.000 0.00 0.00 46.25 3.95
3270 10765 4.859629 ATTTCCGATAAACTCGCTGTTC 57.140 40.909 0.00 0.00 46.25 3.18
3271 10766 4.693566 TCAATTTCCGATAAACTCGCTGTT 59.306 37.500 0.00 0.00 46.25 3.16
3272 10767 4.250464 TCAATTTCCGATAAACTCGCTGT 58.750 39.130 0.00 0.00 46.25 4.40
3273 10768 4.857871 TCAATTTCCGATAAACTCGCTG 57.142 40.909 0.00 0.00 46.25 5.18
3274 10769 6.513180 TCTATCAATTTCCGATAAACTCGCT 58.487 36.000 0.00 0.00 46.25 4.93
3275 10770 6.764877 TCTATCAATTTCCGATAAACTCGC 57.235 37.500 0.00 0.00 46.25 5.03


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.