Multiple sequence alignment - TraesCS2D01G009800

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2D01G009800 chr2D 100.000 2656 0 0 1 2656 5173614 5176269 0.000000e+00 4905.0
1 TraesCS2D01G009800 chr2D 99.203 251 1 1 1422 1671 22209773 22210023 4.030000e-123 451.0
2 TraesCS2D01G009800 chr2D 86.989 269 28 1 1676 1937 22210079 22210347 2.000000e-76 296.0
3 TraesCS2D01G009800 chr2D 86.364 176 23 1 526 700 427894469 427894644 9.700000e-45 191.0
4 TraesCS2D01G009800 chr2A 84.840 1029 90 33 408 1411 3755737 3754750 0.000000e+00 976.0
5 TraesCS2D01G009800 chr2A 84.352 409 49 13 1 404 3756185 3755787 1.150000e-103 387.0
6 TraesCS2D01G009800 chr2B 89.807 726 48 13 699 1411 62418611 62417899 0.000000e+00 907.0
7 TraesCS2D01G009800 chr2B 83.562 365 40 8 2164 2510 62417472 62417110 9.170000e-85 324.0
8 TraesCS2D01G009800 chr2B 87.963 216 23 3 2 216 62419401 62419188 4.390000e-63 252.0
9 TraesCS2D01G009800 chr1A 87.898 628 39 12 796 1421 58860077 58860669 0.000000e+00 704.0
10 TraesCS2D01G009800 chr1B 86.646 659 44 24 766 1421 96313908 96314525 0.000000e+00 689.0
11 TraesCS2D01G009800 chr1D 94.005 417 24 1 1006 1421 60185853 60186269 4.820000e-177 630.0
12 TraesCS2D01G009800 chr1D 99.203 251 1 1 1422 1671 9694700 9694950 4.030000e-123 451.0
13 TraesCS2D01G009800 chr1D 87.732 269 26 1 1676 1937 9695006 9695274 9.240000e-80 307.0
14 TraesCS2D01G009800 chr1D 95.745 47 2 0 653 699 465338642 465338688 2.840000e-10 76.8
15 TraesCS2D01G009800 chr7D 99.602 251 0 1 1422 1671 145177579 145177829 8.670000e-125 457.0
16 TraesCS2D01G009800 chr7D 99.203 251 1 1 1422 1671 35916788 35916538 4.030000e-123 451.0
17 TraesCS2D01G009800 chr7D 99.203 251 1 1 1422 1671 295125727 295125977 4.030000e-123 451.0
18 TraesCS2D01G009800 chr7D 98.805 251 2 1 1422 1671 218761733 218761483 1.880000e-121 446.0
19 TraesCS2D01G009800 chr7D 88.104 269 25 1 1676 1937 295126033 295126301 1.980000e-81 313.0
20 TraesCS2D01G009800 chr7D 87.732 269 26 1 1676 1937 145177885 145178153 9.240000e-80 307.0
21 TraesCS2D01G009800 chr7D 87.361 269 27 1 1676 1937 218761427 218761159 4.300000e-78 302.0
22 TraesCS2D01G009800 chr7D 86.989 269 28 1 1676 1937 35916482 35916214 2.000000e-76 296.0
23 TraesCS2D01G009800 chr7D 94.643 56 3 0 644 699 33224671 33224726 1.310000e-13 87.9
24 TraesCS2D01G009800 chr6D 98.406 251 3 1 1422 1671 20584150 20584400 8.730000e-120 440.0
25 TraesCS2D01G009800 chr6D 86.989 269 27 2 1676 1937 20584456 20584723 2.000000e-76 296.0
26 TraesCS2D01G009800 chr6D 91.503 153 13 0 1712 1864 40213634 40213786 7.450000e-51 211.0
27 TraesCS2D01G009800 chr3D 95.349 258 4 3 1422 1671 43823216 43823473 1.140000e-108 403.0
28 TraesCS2D01G009800 chr3D 99.550 222 0 1 1422 1642 483629518 483629739 1.140000e-108 403.0
29 TraesCS2D01G009800 chr3D 91.503 153 13 0 1712 1864 505740147 505740299 7.450000e-51 211.0
30 TraesCS2D01G009800 chr5D 99.099 222 1 1 1422 1642 124616203 124616424 5.330000e-107 398.0
31 TraesCS2D01G009800 chr4A 93.103 58 4 0 642 699 31578665 31578722 4.710000e-13 86.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2D01G009800 chr2D 5173614 5176269 2655 False 4905.000000 4905 100.000000 1 2656 1 chr2D.!!$F1 2655
1 TraesCS2D01G009800 chr2D 22209773 22210347 574 False 373.500000 451 93.096000 1422 1937 2 chr2D.!!$F3 515
2 TraesCS2D01G009800 chr2A 3754750 3756185 1435 True 681.500000 976 84.596000 1 1411 2 chr2A.!!$R1 1410
3 TraesCS2D01G009800 chr2B 62417110 62419401 2291 True 494.333333 907 87.110667 2 2510 3 chr2B.!!$R1 2508
4 TraesCS2D01G009800 chr1A 58860077 58860669 592 False 704.000000 704 87.898000 796 1421 1 chr1A.!!$F1 625
5 TraesCS2D01G009800 chr1B 96313908 96314525 617 False 689.000000 689 86.646000 766 1421 1 chr1B.!!$F1 655
6 TraesCS2D01G009800 chr1D 9694700 9695274 574 False 379.000000 451 93.467500 1422 1937 2 chr1D.!!$F3 515
7 TraesCS2D01G009800 chr7D 145177579 145178153 574 False 382.000000 457 93.667000 1422 1937 2 chr7D.!!$F2 515
8 TraesCS2D01G009800 chr7D 295125727 295126301 574 False 382.000000 451 93.653500 1422 1937 2 chr7D.!!$F3 515
9 TraesCS2D01G009800 chr7D 218761159 218761733 574 True 374.000000 446 93.083000 1422 1937 2 chr7D.!!$R2 515
10 TraesCS2D01G009800 chr7D 35916214 35916788 574 True 373.500000 451 93.096000 1422 1937 2 chr7D.!!$R1 515
11 TraesCS2D01G009800 chr6D 20584150 20584723 573 False 368.000000 440 92.697500 1422 1937 2 chr6D.!!$F2 515

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
437 496 0.096281 TTCAATAAGCTTTCCGCGCG 59.904 50.0 25.67 25.67 45.59 6.86 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2209 2483 0.031721 GGTCGGACCACATACGGATC 59.968 60.0 22.1 0.0 38.42 3.36 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
28 29 1.827344 CTGGTGATGCTCTCTGGTACA 59.173 52.381 0.00 0.00 0.00 2.90
32 33 2.996621 GTGATGCTCTCTGGTACAACAC 59.003 50.000 0.00 0.00 38.70 3.32
33 34 2.632512 TGATGCTCTCTGGTACAACACA 59.367 45.455 0.00 0.00 38.70 3.72
34 35 2.820059 TGCTCTCTGGTACAACACAG 57.180 50.000 0.00 0.00 38.70 3.66
35 36 2.316108 TGCTCTCTGGTACAACACAGA 58.684 47.619 0.00 0.00 41.13 3.41
36 37 2.035961 TGCTCTCTGGTACAACACAGAC 59.964 50.000 0.00 0.00 38.71 3.51
37 38 2.297597 GCTCTCTGGTACAACACAGACT 59.702 50.000 0.00 0.00 38.71 3.24
96 99 1.927371 TGGAAGGGGATAGGGTTTTCC 59.073 52.381 0.00 0.00 39.75 3.13
100 103 1.373577 AGGGGATAGGGTTTTCCTCCT 59.626 52.381 0.00 0.00 44.06 3.69
106 109 1.657804 AGGGTTTTCCTCCTCGATGT 58.342 50.000 0.00 0.00 44.06 3.06
110 113 2.028020 GGTTTTCCTCCTCGATGTCAGT 60.028 50.000 0.00 0.00 36.94 3.41
113 116 3.367646 TTCCTCCTCGATGTCAGTAGT 57.632 47.619 0.00 0.00 0.00 2.73
114 117 2.920524 TCCTCCTCGATGTCAGTAGTC 58.079 52.381 0.00 0.00 0.00 2.59
125 128 1.154197 TCAGTAGTCTGACCACGACG 58.846 55.000 3.76 0.00 44.58 5.12
138 141 3.782244 CGACGCTGAGTGCTTGGC 61.782 66.667 0.00 0.00 40.11 4.52
158 161 1.703411 CCCTTTCTTGTGAAGGCCAA 58.297 50.000 5.01 0.00 33.28 4.52
168 171 2.158986 TGTGAAGGCCAACCATGTTTTG 60.159 45.455 5.01 0.00 39.06 2.44
174 177 6.438741 TGAAGGCCAACCATGTTTTGAATATA 59.561 34.615 5.01 0.00 39.06 0.86
217 223 1.595794 GTGTTGTTCTTTCGCCTTCGA 59.404 47.619 0.00 0.00 43.89 3.71
219 225 3.430895 GTGTTGTTCTTTCGCCTTCGATA 59.569 43.478 0.00 0.00 45.04 2.92
221 227 3.587797 TGTTCTTTCGCCTTCGATAGT 57.412 42.857 5.39 0.00 45.04 2.12
231 237 2.488937 GCCTTCGATAGTCCCTAGTAGC 59.511 54.545 0.00 0.00 37.40 3.58
233 239 4.400120 CCTTCGATAGTCCCTAGTAGCTT 58.600 47.826 0.00 0.00 37.40 3.74
234 240 4.828387 CCTTCGATAGTCCCTAGTAGCTTT 59.172 45.833 0.00 0.00 37.40 3.51
235 241 5.278561 CCTTCGATAGTCCCTAGTAGCTTTG 60.279 48.000 0.00 0.00 37.40 2.77
236 242 3.568853 TCGATAGTCCCTAGTAGCTTTGC 59.431 47.826 0.00 0.00 37.40 3.68
237 243 3.305471 CGATAGTCCCTAGTAGCTTTGCC 60.305 52.174 0.00 0.00 0.00 4.52
238 244 2.255770 AGTCCCTAGTAGCTTTGCCT 57.744 50.000 0.00 0.00 0.00 4.75
239 245 2.112190 AGTCCCTAGTAGCTTTGCCTC 58.888 52.381 0.00 0.00 0.00 4.70
240 246 2.112190 GTCCCTAGTAGCTTTGCCTCT 58.888 52.381 0.00 0.00 0.00 3.69
241 247 2.502130 GTCCCTAGTAGCTTTGCCTCTT 59.498 50.000 0.00 0.00 0.00 2.85
242 248 2.766828 TCCCTAGTAGCTTTGCCTCTTC 59.233 50.000 0.00 0.00 0.00 2.87
243 249 2.501723 CCCTAGTAGCTTTGCCTCTTCA 59.498 50.000 0.00 0.00 0.00 3.02
244 250 3.526534 CCTAGTAGCTTTGCCTCTTCAC 58.473 50.000 0.00 0.00 0.00 3.18
245 251 2.086054 AGTAGCTTTGCCTCTTCACG 57.914 50.000 0.00 0.00 0.00 4.35
274 287 1.197910 GACGACGGCATAGTTGTAGC 58.802 55.000 0.00 0.00 38.75 3.58
355 368 2.026262 GCCCAGGTTGACCTCAAGATTA 60.026 50.000 0.00 0.00 46.65 1.75
362 375 3.040655 TGACCTCAAGATTATCCGGGA 57.959 47.619 0.00 0.00 0.00 5.14
411 470 1.009900 CCCACGCGTCGAGTCTATC 60.010 63.158 9.86 0.00 0.00 2.08
423 482 2.623889 CGAGTCTATCCGGGAGTTCAAT 59.376 50.000 0.00 0.00 0.00 2.57
436 495 1.130561 AGTTCAATAAGCTTTCCGCGC 59.869 47.619 3.20 0.00 45.59 6.86
437 496 0.096281 TTCAATAAGCTTTCCGCGCG 59.904 50.000 25.67 25.67 45.59 6.86
438 497 1.934476 CAATAAGCTTTCCGCGCGC 60.934 57.895 27.36 23.91 45.59 6.86
503 562 0.406361 ACAAGACCTCCTCCTCTCGT 59.594 55.000 0.00 0.00 0.00 4.18
563 622 3.425713 CGCAGCTTCACGTGCCAT 61.426 61.111 11.67 0.00 36.24 4.40
570 629 3.189376 TTCACGTGCCATGGCTCCA 62.189 57.895 35.53 15.05 42.51 3.86
587 646 1.230635 CCACCTTGTCTGTCTTGCCG 61.231 60.000 0.00 0.00 0.00 5.69
589 648 2.328099 CCTTGTCTGTCTTGCCGCC 61.328 63.158 0.00 0.00 0.00 6.13
617 676 2.153913 CGCTTCCCAAGTGTTCGAG 58.846 57.895 0.00 0.00 34.37 4.04
618 677 0.319555 CGCTTCCCAAGTGTTCGAGA 60.320 55.000 0.00 0.00 34.37 4.04
629 688 6.148948 CCAAGTGTTCGAGAAAATGCATAAA 58.851 36.000 0.00 0.00 0.00 1.40
631 690 6.312399 AGTGTTCGAGAAAATGCATAAACA 57.688 33.333 0.00 0.16 0.00 2.83
639 698 9.853555 TCGAGAAAATGCATAAACAAATTGTAT 57.146 25.926 0.00 0.00 0.00 2.29
700 835 6.259387 ACGACCAAAACTTAGTGGAGTAAAAG 59.741 38.462 0.00 0.00 38.36 2.27
721 868 2.362077 GTTTTACTCGGGCCGGATACTA 59.638 50.000 27.98 3.98 0.00 1.82
722 869 1.609208 TTACTCGGGCCGGATACTAC 58.391 55.000 27.98 0.00 0.00 2.73
754 901 0.179054 GGATCGGTTAGAGTTGGCCC 60.179 60.000 0.00 0.00 0.00 5.80
755 902 0.539986 GATCGGTTAGAGTTGGCCCA 59.460 55.000 0.00 0.00 0.00 5.36
757 904 0.766131 TCGGTTAGAGTTGGCCCAAA 59.234 50.000 0.00 0.00 0.00 3.28
758 905 0.879090 CGGTTAGAGTTGGCCCAAAC 59.121 55.000 0.00 0.00 0.00 2.93
759 906 1.254026 GGTTAGAGTTGGCCCAAACC 58.746 55.000 0.00 0.00 0.00 3.27
760 907 1.203013 GGTTAGAGTTGGCCCAAACCT 60.203 52.381 0.00 0.54 34.79 3.50
761 908 2.160205 GTTAGAGTTGGCCCAAACCTC 58.840 52.381 0.00 1.36 0.00 3.85
762 909 0.323629 TAGAGTTGGCCCAAACCTCG 59.676 55.000 0.00 0.00 0.00 4.63
763 910 1.971695 GAGTTGGCCCAAACCTCGG 60.972 63.158 0.00 0.00 0.00 4.63
764 911 2.114411 GTTGGCCCAAACCTCGGA 59.886 61.111 0.00 0.00 0.00 4.55
765 912 2.114411 TTGGCCCAAACCTCGGAC 59.886 61.111 0.00 0.00 0.00 4.79
766 913 2.758207 TTGGCCCAAACCTCGGACA 61.758 57.895 0.00 0.00 34.45 4.02
767 914 2.114411 GGCCCAAACCTCGGACAA 59.886 61.111 0.00 0.00 0.00 3.18
822 987 9.358872 CTAGAGGTTAGCCAAAATTTGAAATTC 57.641 33.333 7.37 0.00 37.19 2.17
847 1012 4.329801 CCAAACACAAACTTCCTTTTGAGC 59.670 41.667 2.70 0.00 38.54 4.26
864 1030 5.927954 TTGAGCAGCCAAAATTTGAAATC 57.072 34.783 7.37 0.00 0.00 2.17
881 1047 5.167121 TGAAATCACACAAACACAAACCTG 58.833 37.500 0.00 0.00 0.00 4.00
898 1064 2.172293 ACCTGCAAAAGCCAAATTCCAA 59.828 40.909 0.00 0.00 0.00 3.53
903 1069 3.428534 GCAAAAGCCAAATTCCAACGTAG 59.571 43.478 0.00 0.00 0.00 3.51
956 1126 3.305676 CGAGGAAAGCAGAGAAACAGAGA 60.306 47.826 0.00 0.00 0.00 3.10
997 1167 4.838152 CCCAGATCCACCGCACCG 62.838 72.222 0.00 0.00 0.00 4.94
1000 1170 4.760047 AGATCCACCGCACCGCAC 62.760 66.667 0.00 0.00 0.00 5.34
1023 1193 4.193334 CGAGCGACCGAGCATGGA 62.193 66.667 0.69 0.00 40.15 3.41
1411 1581 1.006337 CTGCATCTCCTAGCTCGCC 60.006 63.158 0.00 0.00 0.00 5.54
1412 1582 1.456518 TGCATCTCCTAGCTCGCCT 60.457 57.895 0.00 0.00 0.00 5.52
1418 1588 3.296054 CCTAGCTCGCCTACCCCG 61.296 72.222 0.00 0.00 0.00 5.73
1419 1589 2.518825 CTAGCTCGCCTACCCCGT 60.519 66.667 0.00 0.00 0.00 5.28
1420 1590 2.517875 TAGCTCGCCTACCCCGTC 60.518 66.667 0.00 0.00 0.00 4.79
1671 1870 6.939730 TGATTTAGAGCAGACATGTTACCAAA 59.060 34.615 0.00 0.00 0.00 3.28
1672 1871 6.554334 TTTAGAGCAGACATGTTACCAAAC 57.446 37.500 0.00 0.00 36.07 2.93
1673 1872 4.357918 AGAGCAGACATGTTACCAAACT 57.642 40.909 0.00 0.00 36.51 2.66
1674 1873 4.067896 AGAGCAGACATGTTACCAAACTG 58.932 43.478 0.00 1.68 36.51 3.16
1680 1930 5.122869 CAGACATGTTACCAAACTGGATCAG 59.877 44.000 0.00 0.00 40.96 2.90
1709 1959 3.243724 GGATCCTTATCACTGTAGGCCT 58.756 50.000 11.78 11.78 33.41 5.19
1724 1981 1.226831 GCCTCTGTACTGCTCTCGC 60.227 63.158 0.00 0.00 0.00 5.03
1728 1985 1.581402 CTGTACTGCTCTCGCGTCG 60.581 63.158 5.77 0.00 39.65 5.12
1745 2002 3.562639 CGTCAAGAACGTCTGGTGA 57.437 52.632 0.00 0.00 46.42 4.02
1788 2045 0.108424 CCTCAGGGCAGAGTTTCTCG 60.108 60.000 5.63 0.00 35.36 4.04
1822 2079 0.604578 GTGTGCATCAAAGGCCACAT 59.395 50.000 5.01 0.00 34.61 3.21
1828 2085 3.768215 TGCATCAAAGGCCACATAATTGA 59.232 39.130 5.01 6.06 34.80 2.57
1830 2087 4.567959 GCATCAAAGGCCACATAATTGAAC 59.432 41.667 5.01 0.00 34.09 3.18
1836 2093 2.490115 GGCCACATAATTGAACCGTTCA 59.510 45.455 9.99 9.99 38.04 3.18
1864 2121 7.386848 GCATTTTATTCCTGAAATATGCAGCAT 59.613 33.333 13.73 13.73 34.30 3.79
1879 2136 1.152694 GCATTGCAGGCCTCCCATA 60.153 57.895 0.00 0.00 0.00 2.74
1881 2138 1.272092 GCATTGCAGGCCTCCCATATA 60.272 52.381 0.00 0.00 0.00 0.86
1887 2144 2.573462 GCAGGCCTCCCATATAGATCAA 59.427 50.000 0.00 0.00 0.00 2.57
1890 2147 4.533707 CAGGCCTCCCATATAGATCAAAGA 59.466 45.833 0.00 0.00 0.00 2.52
1894 2151 5.482908 CCTCCCATATAGATCAAAGAACCG 58.517 45.833 0.00 0.00 0.00 4.44
1922 2179 6.020520 GCGACTGTAAATCTGTAGCTAGTTTC 60.021 42.308 0.00 0.00 40.95 2.78
1926 2183 9.780186 ACTGTAAATCTGTAGCTAGTTTCTTTT 57.220 29.630 0.00 0.00 0.00 2.27
1938 2195 8.155821 AGCTAGTTTCTTTTTCTTTCTGTACC 57.844 34.615 0.00 0.00 0.00 3.34
1939 2196 7.773690 AGCTAGTTTCTTTTTCTTTCTGTACCA 59.226 33.333 0.00 0.00 0.00 3.25
1940 2197 7.856398 GCTAGTTTCTTTTTCTTTCTGTACCAC 59.144 37.037 0.00 0.00 0.00 4.16
1941 2198 7.939784 AGTTTCTTTTTCTTTCTGTACCACT 57.060 32.000 0.00 0.00 0.00 4.00
1942 2199 7.986562 AGTTTCTTTTTCTTTCTGTACCACTC 58.013 34.615 0.00 0.00 0.00 3.51
1943 2200 7.610305 AGTTTCTTTTTCTTTCTGTACCACTCA 59.390 33.333 0.00 0.00 0.00 3.41
1944 2201 7.931578 TTCTTTTTCTTTCTGTACCACTCAA 57.068 32.000 0.00 0.00 0.00 3.02
1945 2202 8.519799 TTCTTTTTCTTTCTGTACCACTCAAT 57.480 30.769 0.00 0.00 0.00 2.57
1946 2203 8.154649 TCTTTTTCTTTCTGTACCACTCAATC 57.845 34.615 0.00 0.00 0.00 2.67
1947 2204 6.877611 TTTTCTTTCTGTACCACTCAATCC 57.122 37.500 0.00 0.00 0.00 3.01
1948 2205 5.560722 TTCTTTCTGTACCACTCAATCCA 57.439 39.130 0.00 0.00 0.00 3.41
1949 2206 5.152623 TCTTTCTGTACCACTCAATCCAG 57.847 43.478 0.00 0.00 0.00 3.86
1950 2207 3.334583 TTCTGTACCACTCAATCCAGC 57.665 47.619 0.00 0.00 0.00 4.85
1951 2208 2.256306 TCTGTACCACTCAATCCAGCA 58.744 47.619 0.00 0.00 0.00 4.41
1952 2209 2.840038 TCTGTACCACTCAATCCAGCAT 59.160 45.455 0.00 0.00 0.00 3.79
1953 2210 2.941064 CTGTACCACTCAATCCAGCATG 59.059 50.000 0.00 0.00 0.00 4.06
1954 2211 1.672881 GTACCACTCAATCCAGCATGC 59.327 52.381 10.51 10.51 31.97 4.06
1955 2212 0.682209 ACCACTCAATCCAGCATGCC 60.682 55.000 15.66 0.00 31.97 4.40
1956 2213 0.681887 CCACTCAATCCAGCATGCCA 60.682 55.000 15.66 0.00 31.97 4.92
1957 2214 0.738975 CACTCAATCCAGCATGCCAG 59.261 55.000 15.66 7.48 31.97 4.85
1958 2215 0.330604 ACTCAATCCAGCATGCCAGT 59.669 50.000 15.66 2.37 31.97 4.00
1959 2216 1.022735 CTCAATCCAGCATGCCAGTC 58.977 55.000 15.66 0.00 31.97 3.51
1960 2217 0.328926 TCAATCCAGCATGCCAGTCA 59.671 50.000 15.66 0.00 31.97 3.41
1961 2218 1.064240 TCAATCCAGCATGCCAGTCAT 60.064 47.619 15.66 0.00 35.31 3.06
1962 2219 1.754803 CAATCCAGCATGCCAGTCATT 59.245 47.619 15.66 3.15 31.79 2.57
1963 2220 2.953648 CAATCCAGCATGCCAGTCATTA 59.046 45.455 15.66 0.00 31.79 1.90
1964 2221 2.804986 TCCAGCATGCCAGTCATTAA 57.195 45.000 15.66 0.00 31.79 1.40
1965 2222 3.084536 TCCAGCATGCCAGTCATTAAA 57.915 42.857 15.66 0.00 31.79 1.52
1966 2223 3.634504 TCCAGCATGCCAGTCATTAAAT 58.365 40.909 15.66 0.00 31.79 1.40
1967 2224 4.025360 TCCAGCATGCCAGTCATTAAATT 58.975 39.130 15.66 0.00 31.79 1.82
1968 2225 5.199723 TCCAGCATGCCAGTCATTAAATTA 58.800 37.500 15.66 0.00 31.79 1.40
1969 2226 5.834742 TCCAGCATGCCAGTCATTAAATTAT 59.165 36.000 15.66 0.00 31.79 1.28
1970 2227 6.016024 TCCAGCATGCCAGTCATTAAATTATC 60.016 38.462 15.66 0.00 31.79 1.75
1971 2228 6.239092 CCAGCATGCCAGTCATTAAATTATCA 60.239 38.462 15.66 0.00 31.79 2.15
1972 2229 7.204604 CAGCATGCCAGTCATTAAATTATCAA 58.795 34.615 15.66 0.00 31.79 2.57
1973 2230 7.870954 CAGCATGCCAGTCATTAAATTATCAAT 59.129 33.333 15.66 0.00 31.79 2.57
1974 2231 9.081204 AGCATGCCAGTCATTAAATTATCAATA 57.919 29.630 15.66 0.00 31.79 1.90
1975 2232 9.865321 GCATGCCAGTCATTAAATTATCAATAT 57.135 29.630 6.36 0.00 31.79 1.28
1978 2235 9.023962 TGCCAGTCATTAAATTATCAATATCCC 57.976 33.333 0.00 0.00 0.00 3.85
1979 2236 8.184192 GCCAGTCATTAAATTATCAATATCCCG 58.816 37.037 0.00 0.00 0.00 5.14
1980 2237 8.677300 CCAGTCATTAAATTATCAATATCCCGG 58.323 37.037 0.00 0.00 0.00 5.73
1981 2238 9.231297 CAGTCATTAAATTATCAATATCCCGGT 57.769 33.333 0.00 0.00 0.00 5.28
1982 2239 9.231297 AGTCATTAAATTATCAATATCCCGGTG 57.769 33.333 0.00 0.00 0.00 4.94
1983 2240 8.458843 GTCATTAAATTATCAATATCCCGGTGG 58.541 37.037 0.00 0.00 0.00 4.61
1984 2241 6.827586 TTAAATTATCAATATCCCGGTGGC 57.172 37.500 0.00 0.00 0.00 5.01
1985 2242 4.380843 AATTATCAATATCCCGGTGGCA 57.619 40.909 0.00 0.00 0.00 4.92
1986 2243 3.417069 TTATCAATATCCCGGTGGCAG 57.583 47.619 0.00 0.00 0.00 4.85
1987 2244 0.401738 ATCAATATCCCGGTGGCAGG 59.598 55.000 0.00 0.00 0.00 4.85
1988 2245 0.692756 TCAATATCCCGGTGGCAGGA 60.693 55.000 0.00 0.00 36.36 3.86
1989 2246 0.182537 CAATATCCCGGTGGCAGGAA 59.817 55.000 0.00 0.00 35.30 3.36
1990 2247 0.923358 AATATCCCGGTGGCAGGAAA 59.077 50.000 0.00 0.00 35.30 3.13
1991 2248 0.474184 ATATCCCGGTGGCAGGAAAG 59.526 55.000 0.00 0.00 35.30 2.62
1992 2249 0.619255 TATCCCGGTGGCAGGAAAGA 60.619 55.000 0.00 0.00 35.30 2.52
1993 2250 1.497309 ATCCCGGTGGCAGGAAAGAA 61.497 55.000 0.00 0.00 35.30 2.52
1994 2251 1.228429 CCCGGTGGCAGGAAAGAAA 60.228 57.895 0.00 0.00 0.00 2.52
1995 2252 1.244019 CCCGGTGGCAGGAAAGAAAG 61.244 60.000 0.00 0.00 0.00 2.62
1996 2253 0.250727 CCGGTGGCAGGAAAGAAAGA 60.251 55.000 0.00 0.00 0.00 2.52
1997 2254 1.604604 CGGTGGCAGGAAAGAAAGAA 58.395 50.000 0.00 0.00 0.00 2.52
1998 2255 1.953686 CGGTGGCAGGAAAGAAAGAAA 59.046 47.619 0.00 0.00 0.00 2.52
1999 2256 2.360801 CGGTGGCAGGAAAGAAAGAAAA 59.639 45.455 0.00 0.00 0.00 2.29
2000 2257 3.181480 CGGTGGCAGGAAAGAAAGAAAAA 60.181 43.478 0.00 0.00 0.00 1.94
2001 2258 4.501400 CGGTGGCAGGAAAGAAAGAAAAAT 60.501 41.667 0.00 0.00 0.00 1.82
2002 2259 4.751600 GGTGGCAGGAAAGAAAGAAAAATG 59.248 41.667 0.00 0.00 0.00 2.32
2003 2260 5.359756 GTGGCAGGAAAGAAAGAAAAATGT 58.640 37.500 0.00 0.00 0.00 2.71
2004 2261 5.234972 GTGGCAGGAAAGAAAGAAAAATGTG 59.765 40.000 0.00 0.00 0.00 3.21
2005 2262 5.128499 TGGCAGGAAAGAAAGAAAAATGTGA 59.872 36.000 0.00 0.00 0.00 3.58
2006 2263 6.048509 GGCAGGAAAGAAAGAAAAATGTGAA 58.951 36.000 0.00 0.00 0.00 3.18
2007 2264 6.538381 GGCAGGAAAGAAAGAAAAATGTGAAA 59.462 34.615 0.00 0.00 0.00 2.69
2008 2265 7.401860 GCAGGAAAGAAAGAAAAATGTGAAAC 58.598 34.615 0.00 0.00 37.35 2.78
2025 2282 7.124347 TGTGAAACACGGATTTAACTGTATC 57.876 36.000 0.00 0.00 45.67 2.24
2026 2283 6.148150 TGTGAAACACGGATTTAACTGTATCC 59.852 38.462 0.00 0.00 45.67 2.59
2027 2284 5.644636 TGAAACACGGATTTAACTGTATCCC 59.355 40.000 3.16 0.00 37.60 3.85
2028 2285 4.829872 ACACGGATTTAACTGTATCCCA 57.170 40.909 3.16 0.00 37.60 4.37
2029 2286 5.168647 ACACGGATTTAACTGTATCCCAA 57.831 39.130 3.16 0.00 37.60 4.12
2030 2287 5.562635 ACACGGATTTAACTGTATCCCAAA 58.437 37.500 3.16 0.00 37.60 3.28
2031 2288 5.413523 ACACGGATTTAACTGTATCCCAAAC 59.586 40.000 3.16 0.00 37.60 2.93
2032 2289 5.413213 CACGGATTTAACTGTATCCCAAACA 59.587 40.000 3.16 0.00 37.60 2.83
2033 2290 6.094881 CACGGATTTAACTGTATCCCAAACAT 59.905 38.462 3.16 0.00 37.60 2.71
2034 2291 7.281324 CACGGATTTAACTGTATCCCAAACATA 59.719 37.037 3.16 0.00 37.60 2.29
2035 2292 7.281549 ACGGATTTAACTGTATCCCAAACATAC 59.718 37.037 3.16 0.00 37.60 2.39
2036 2293 7.497909 CGGATTTAACTGTATCCCAAACATACT 59.502 37.037 3.16 0.00 37.60 2.12
2037 2294 9.185680 GGATTTAACTGTATCCCAAACATACTT 57.814 33.333 0.00 0.00 35.33 2.24
2071 2328 8.800370 TTGTGCTTTCTGTTACATATATCCAA 57.200 30.769 0.00 0.00 0.00 3.53
2072 2329 8.208718 TGTGCTTTCTGTTACATATATCCAAC 57.791 34.615 0.00 0.77 0.00 3.77
2075 2332 9.764363 TGCTTTCTGTTACATATATCCAACTAG 57.236 33.333 7.24 0.00 0.00 2.57
2076 2333 9.982651 GCTTTCTGTTACATATATCCAACTAGA 57.017 33.333 0.00 6.09 0.00 2.43
2136 2393 8.570068 TGTTTGTTATCAATACCTACTTTCCC 57.430 34.615 0.00 0.00 33.32 3.97
2145 2402 1.909986 ACCTACTTTCCCTCCTCTTGC 59.090 52.381 0.00 0.00 0.00 4.01
2150 2407 2.959030 ACTTTCCCTCCTCTTGCAAAAC 59.041 45.455 0.00 0.00 0.00 2.43
2153 2410 4.380843 TTCCCTCCTCTTGCAAAACATA 57.619 40.909 0.00 0.00 0.00 2.29
2154 2411 3.955471 TCCCTCCTCTTGCAAAACATAG 58.045 45.455 0.00 0.00 0.00 2.23
2157 2414 4.524328 CCCTCCTCTTGCAAAACATAGTTT 59.476 41.667 0.00 0.00 0.00 2.66
2176 2450 0.405198 TCCCTGTTGCCATGTGTCAT 59.595 50.000 0.00 0.00 0.00 3.06
2182 2456 3.485394 TGTTGCCATGTGTCATGTAAGT 58.515 40.909 8.57 0.00 0.00 2.24
2183 2457 3.888323 TGTTGCCATGTGTCATGTAAGTT 59.112 39.130 8.57 0.00 0.00 2.66
2189 2463 5.220739 GCCATGTGTCATGTAAGTTCAGATC 60.221 44.000 8.57 0.00 0.00 2.75
2194 2468 5.233050 GTGTCATGTAAGTTCAGATCGATGG 59.767 44.000 0.54 0.00 0.00 3.51
2200 2474 1.556911 AGTTCAGATCGATGGTGCCTT 59.443 47.619 0.54 0.00 0.00 4.35
2201 2475 1.936547 GTTCAGATCGATGGTGCCTTC 59.063 52.381 0.54 0.00 0.00 3.46
2209 2483 3.270027 TCGATGGTGCCTTCAACTAATG 58.730 45.455 5.21 0.00 0.00 1.90
2214 2488 2.614057 GGTGCCTTCAACTAATGATCCG 59.386 50.000 0.00 0.00 38.03 4.18
2216 2490 4.439057 GTGCCTTCAACTAATGATCCGTA 58.561 43.478 0.00 0.00 38.03 4.02
2219 2493 5.057149 GCCTTCAACTAATGATCCGTATGT 58.943 41.667 0.00 0.00 38.03 2.29
2258 2547 3.692257 GCCTGACTATGGCTACATGAT 57.308 47.619 0.00 0.00 46.38 2.45
2264 2553 3.937706 GACTATGGCTACATGATCATGCC 59.062 47.826 31.17 26.58 42.39 4.40
2338 2628 4.142513 GGTCCATCTTGAATGCTCTGTTTC 60.143 45.833 0.00 0.00 0.00 2.78
2340 2630 3.438087 CCATCTTGAATGCTCTGTTTCGT 59.562 43.478 0.00 0.00 0.00 3.85
2346 2636 2.827604 TGCTCTGTTTCGTAGCAGC 58.172 52.632 0.93 0.00 41.15 5.25
2347 2637 0.033366 TGCTCTGTTTCGTAGCAGCA 59.967 50.000 0.93 0.00 41.15 4.41
2348 2638 0.718343 GCTCTGTTTCGTAGCAGCAG 59.282 55.000 0.93 2.05 36.26 4.24
2351 2641 0.320771 CTGTTTCGTAGCAGCAGGGT 60.321 55.000 0.00 0.00 0.00 4.34
2352 2642 0.970640 TGTTTCGTAGCAGCAGGGTA 59.029 50.000 0.00 0.00 0.00 3.69
2377 2667 7.565323 ACTATACCTTGTTACTCCTACTTCG 57.435 40.000 0.00 0.00 0.00 3.79
2400 2690 2.358957 GCACACAAGATCATGGCTGTA 58.641 47.619 2.59 0.00 0.00 2.74
2417 2707 2.103941 CTGTAATCTGGGAGGGAGAAGC 59.896 54.545 0.00 0.00 0.00 3.86
2419 2709 0.325671 AATCTGGGAGGGAGAAGCGA 60.326 55.000 0.00 0.00 0.00 4.93
2422 2712 1.671901 CTGGGAGGGAGAAGCGACTC 61.672 65.000 4.95 4.95 36.31 3.36
2423 2713 1.380650 GGGAGGGAGAAGCGACTCT 60.381 63.158 11.62 0.11 37.13 3.24
2424 2714 1.671901 GGGAGGGAGAAGCGACTCTG 61.672 65.000 11.62 0.00 37.13 3.35
2428 2718 0.109039 GGGAGAAGCGACTCTGTGAC 60.109 60.000 11.62 0.00 37.13 3.67
2430 2720 2.085320 GGAGAAGCGACTCTGTGACTA 58.915 52.381 11.62 0.00 37.13 2.59
2431 2721 2.488545 GGAGAAGCGACTCTGTGACTAA 59.511 50.000 11.62 0.00 37.13 2.24
2444 2734 6.820656 ACTCTGTGACTAAATGCTTAATCCTG 59.179 38.462 0.00 0.00 0.00 3.86
2445 2735 6.711277 TCTGTGACTAAATGCTTAATCCTGT 58.289 36.000 0.00 0.00 0.00 4.00
2446 2736 7.847096 TCTGTGACTAAATGCTTAATCCTGTA 58.153 34.615 0.00 0.00 0.00 2.74
2492 2783 4.901866 AACACAAAAGCTTCACGTTTTG 57.098 36.364 0.00 1.71 45.29 2.44
2498 2789 6.417635 CACAAAAGCTTCACGTTTTGATGTAT 59.582 34.615 13.50 0.00 43.42 2.29
2504 2795 7.644490 AGCTTCACGTTTTGATGTATTGTTAA 58.356 30.769 0.00 0.00 32.84 2.01
2505 2796 7.803189 AGCTTCACGTTTTGATGTATTGTTAAG 59.197 33.333 0.00 0.00 32.84 1.85
2517 2808 9.337396 TGATGTATTGTTAAGAAAAGACTGTGT 57.663 29.630 0.00 0.00 0.00 3.72
2521 2812 9.595357 GTATTGTTAAGAAAAGACTGTGTAAGC 57.405 33.333 0.00 0.00 0.00 3.09
2522 2813 7.859325 TTGTTAAGAAAAGACTGTGTAAGCT 57.141 32.000 0.00 0.00 0.00 3.74
2523 2814 7.478520 TGTTAAGAAAAGACTGTGTAAGCTC 57.521 36.000 0.00 0.00 0.00 4.09
2524 2815 7.272978 TGTTAAGAAAAGACTGTGTAAGCTCT 58.727 34.615 0.00 0.00 0.00 4.09
2525 2816 8.418662 TGTTAAGAAAAGACTGTGTAAGCTCTA 58.581 33.333 0.00 0.00 0.00 2.43
2526 2817 9.257651 GTTAAGAAAAGACTGTGTAAGCTCTAA 57.742 33.333 0.00 0.00 0.00 2.10
2527 2818 9.826574 TTAAGAAAAGACTGTGTAAGCTCTAAA 57.173 29.630 0.00 0.00 0.00 1.85
2528 2819 7.716768 AGAAAAGACTGTGTAAGCTCTAAAC 57.283 36.000 0.00 0.00 0.00 2.01
2529 2820 7.272978 AGAAAAGACTGTGTAAGCTCTAAACA 58.727 34.615 0.00 0.00 0.00 2.83
2530 2821 7.769044 AGAAAAGACTGTGTAAGCTCTAAACAA 59.231 33.333 0.00 0.00 0.00 2.83
2531 2822 8.451908 AAAAGACTGTGTAAGCTCTAAACAAT 57.548 30.769 0.00 0.00 0.00 2.71
2532 2823 8.451908 AAAGACTGTGTAAGCTCTAAACAATT 57.548 30.769 0.00 0.00 0.00 2.32
2533 2824 8.451908 AAGACTGTGTAAGCTCTAAACAATTT 57.548 30.769 0.00 0.00 0.00 1.82
2534 2825 8.089115 AGACTGTGTAAGCTCTAAACAATTTC 57.911 34.615 0.00 0.00 0.00 2.17
2535 2826 7.715249 AGACTGTGTAAGCTCTAAACAATTTCA 59.285 33.333 0.00 0.00 0.00 2.69
2536 2827 8.396272 ACTGTGTAAGCTCTAAACAATTTCAT 57.604 30.769 0.00 0.00 0.00 2.57
2537 2828 8.850156 ACTGTGTAAGCTCTAAACAATTTCATT 58.150 29.630 0.00 0.00 0.00 2.57
2538 2829 9.683069 CTGTGTAAGCTCTAAACAATTTCATTT 57.317 29.630 0.00 0.00 0.00 2.32
2583 2874 4.203654 GGCTATACCAACCCATACTAGC 57.796 50.000 0.00 0.00 38.86 3.42
2584 2875 3.581332 GGCTATACCAACCCATACTAGCA 59.419 47.826 0.00 0.00 38.86 3.49
2585 2876 4.225267 GGCTATACCAACCCATACTAGCAT 59.775 45.833 0.00 0.00 38.86 3.79
2586 2877 5.280521 GGCTATACCAACCCATACTAGCATT 60.281 44.000 0.00 0.00 38.86 3.56
2587 2878 6.070424 GGCTATACCAACCCATACTAGCATTA 60.070 42.308 0.00 0.00 38.86 1.90
2588 2879 7.365652 GGCTATACCAACCCATACTAGCATTAT 60.366 40.741 0.00 0.00 38.86 1.28
2589 2880 8.047310 GCTATACCAACCCATACTAGCATTATT 58.953 37.037 0.00 0.00 32.41 1.40
2590 2881 9.383519 CTATACCAACCCATACTAGCATTATTG 57.616 37.037 0.00 0.00 0.00 1.90
2591 2882 5.385198 ACCAACCCATACTAGCATTATTGG 58.615 41.667 9.52 9.52 39.95 3.16
2592 2883 4.766891 CCAACCCATACTAGCATTATTGGG 59.233 45.833 11.28 11.28 40.93 4.12
2593 2884 4.034285 ACCCATACTAGCATTATTGGGC 57.966 45.455 12.44 0.00 38.84 5.36
2594 2885 3.009723 CCCATACTAGCATTATTGGGCG 58.990 50.000 1.68 0.00 34.54 6.13
2595 2886 3.559171 CCCATACTAGCATTATTGGGCGT 60.559 47.826 1.68 0.00 34.54 5.68
2596 2887 4.072131 CCATACTAGCATTATTGGGCGTT 58.928 43.478 0.00 0.00 34.54 4.84
2597 2888 5.242434 CCATACTAGCATTATTGGGCGTTA 58.758 41.667 0.00 0.00 34.54 3.18
2598 2889 5.351465 CCATACTAGCATTATTGGGCGTTAG 59.649 44.000 0.00 0.00 34.54 2.34
2599 2890 3.740115 ACTAGCATTATTGGGCGTTAGG 58.260 45.455 0.00 0.00 34.54 2.69
2600 2891 1.981256 AGCATTATTGGGCGTTAGGG 58.019 50.000 0.00 0.00 34.54 3.53
2601 2892 1.493022 AGCATTATTGGGCGTTAGGGA 59.507 47.619 0.00 0.00 34.54 4.20
2602 2893 2.092103 AGCATTATTGGGCGTTAGGGAA 60.092 45.455 0.00 0.00 34.54 3.97
2603 2894 2.293399 GCATTATTGGGCGTTAGGGAAG 59.707 50.000 0.00 0.00 0.00 3.46
2604 2895 2.047002 TTATTGGGCGTTAGGGAAGC 57.953 50.000 0.00 0.00 0.00 3.86
2605 2896 1.209621 TATTGGGCGTTAGGGAAGCT 58.790 50.000 0.00 0.00 0.00 3.74
2606 2897 0.394352 ATTGGGCGTTAGGGAAGCTG 60.394 55.000 0.00 0.00 0.00 4.24
2607 2898 2.124695 GGGCGTTAGGGAAGCTGG 60.125 66.667 0.00 0.00 0.00 4.85
2608 2899 2.669240 GGCGTTAGGGAAGCTGGT 59.331 61.111 0.00 0.00 0.00 4.00
2609 2900 1.619807 GGGCGTTAGGGAAGCTGGTA 61.620 60.000 0.00 0.00 0.00 3.25
2610 2901 0.468648 GGCGTTAGGGAAGCTGGTAT 59.531 55.000 0.00 0.00 0.00 2.73
2611 2902 1.583054 GCGTTAGGGAAGCTGGTATG 58.417 55.000 0.00 0.00 0.00 2.39
2612 2903 1.583054 CGTTAGGGAAGCTGGTATGC 58.417 55.000 0.00 0.00 0.00 3.14
2613 2904 1.134521 CGTTAGGGAAGCTGGTATGCA 60.135 52.381 0.00 0.00 34.99 3.96
2614 2905 2.565841 GTTAGGGAAGCTGGTATGCAG 58.434 52.381 0.00 0.00 34.99 4.41
2615 2906 1.879575 TAGGGAAGCTGGTATGCAGT 58.120 50.000 0.00 0.00 34.99 4.40
2616 2907 0.995024 AGGGAAGCTGGTATGCAGTT 59.005 50.000 0.00 0.00 34.99 3.16
2617 2908 1.355720 AGGGAAGCTGGTATGCAGTTT 59.644 47.619 0.00 0.00 34.99 2.66
2618 2909 1.474077 GGGAAGCTGGTATGCAGTTTG 59.526 52.381 0.00 0.00 34.99 2.93
2619 2910 1.135286 GGAAGCTGGTATGCAGTTTGC 60.135 52.381 0.00 0.00 45.29 3.68
2620 2911 1.815003 GAAGCTGGTATGCAGTTTGCT 59.185 47.619 2.48 0.00 45.31 3.91
2621 2912 1.915141 AGCTGGTATGCAGTTTGCTT 58.085 45.000 2.48 0.00 45.31 3.91
2622 2913 1.542915 AGCTGGTATGCAGTTTGCTTG 59.457 47.619 2.48 0.00 45.31 4.01
2623 2914 1.270550 GCTGGTATGCAGTTTGCTTGT 59.729 47.619 2.48 0.00 45.31 3.16
2624 2915 2.487762 GCTGGTATGCAGTTTGCTTGTA 59.512 45.455 2.48 0.00 45.31 2.41
2625 2916 3.670627 GCTGGTATGCAGTTTGCTTGTAC 60.671 47.826 2.48 3.69 45.31 2.90
2626 2917 2.817258 TGGTATGCAGTTTGCTTGTACC 59.183 45.455 16.55 16.55 45.31 3.34
2627 2918 2.163613 GGTATGCAGTTTGCTTGTACCC 59.836 50.000 14.31 2.56 45.31 3.69
2628 2919 1.256812 ATGCAGTTTGCTTGTACCCC 58.743 50.000 2.48 0.00 45.31 4.95
2629 2920 0.106469 TGCAGTTTGCTTGTACCCCA 60.106 50.000 2.48 0.00 45.31 4.96
2630 2921 1.256812 GCAGTTTGCTTGTACCCCAT 58.743 50.000 0.00 0.00 40.96 4.00
2631 2922 1.618343 GCAGTTTGCTTGTACCCCATT 59.382 47.619 0.00 0.00 40.96 3.16
2632 2923 2.037121 GCAGTTTGCTTGTACCCCATTT 59.963 45.455 0.00 0.00 40.96 2.32
2633 2924 3.494223 GCAGTTTGCTTGTACCCCATTTT 60.494 43.478 0.00 0.00 40.96 1.82
2634 2925 4.702831 CAGTTTGCTTGTACCCCATTTTT 58.297 39.130 0.00 0.00 0.00 1.94
2635 2926 4.749598 CAGTTTGCTTGTACCCCATTTTTC 59.250 41.667 0.00 0.00 0.00 2.29
2636 2927 4.653801 AGTTTGCTTGTACCCCATTTTTCT 59.346 37.500 0.00 0.00 0.00 2.52
2637 2928 4.864704 TTGCTTGTACCCCATTTTTCTC 57.135 40.909 0.00 0.00 0.00 2.87
2638 2929 4.112634 TGCTTGTACCCCATTTTTCTCT 57.887 40.909 0.00 0.00 0.00 3.10
2639 2930 4.479158 TGCTTGTACCCCATTTTTCTCTT 58.521 39.130 0.00 0.00 0.00 2.85
2640 2931 4.898861 TGCTTGTACCCCATTTTTCTCTTT 59.101 37.500 0.00 0.00 0.00 2.52
2641 2932 6.071984 TGCTTGTACCCCATTTTTCTCTTTA 58.928 36.000 0.00 0.00 0.00 1.85
2642 2933 6.723977 TGCTTGTACCCCATTTTTCTCTTTAT 59.276 34.615 0.00 0.00 0.00 1.40
2643 2934 7.093945 TGCTTGTACCCCATTTTTCTCTTTATC 60.094 37.037 0.00 0.00 0.00 1.75
2644 2935 7.630728 GCTTGTACCCCATTTTTCTCTTTATCC 60.631 40.741 0.00 0.00 0.00 2.59
2645 2936 5.883673 TGTACCCCATTTTTCTCTTTATCCG 59.116 40.000 0.00 0.00 0.00 4.18
2646 2937 4.930696 ACCCCATTTTTCTCTTTATCCGT 58.069 39.130 0.00 0.00 0.00 4.69
2647 2938 5.330233 ACCCCATTTTTCTCTTTATCCGTT 58.670 37.500 0.00 0.00 0.00 4.44
2648 2939 5.185056 ACCCCATTTTTCTCTTTATCCGTTG 59.815 40.000 0.00 0.00 0.00 4.10
2649 2940 5.102313 CCCATTTTTCTCTTTATCCGTTGC 58.898 41.667 0.00 0.00 0.00 4.17
2650 2941 5.105756 CCCATTTTTCTCTTTATCCGTTGCT 60.106 40.000 0.00 0.00 0.00 3.91
2651 2942 6.094881 CCCATTTTTCTCTTTATCCGTTGCTA 59.905 38.462 0.00 0.00 0.00 3.49
2652 2943 6.967199 CCATTTTTCTCTTTATCCGTTGCTAC 59.033 38.462 0.00 0.00 0.00 3.58
2653 2944 7.148239 CCATTTTTCTCTTTATCCGTTGCTACT 60.148 37.037 0.00 0.00 0.00 2.57
2654 2945 6.721571 TTTTCTCTTTATCCGTTGCTACTG 57.278 37.500 0.00 0.00 0.00 2.74
2655 2946 4.386867 TCTCTTTATCCGTTGCTACTGG 57.613 45.455 0.00 0.11 0.00 4.00
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
28 29 4.787551 TGGGACATAACAAAGTCTGTGTT 58.212 39.130 13.02 13.02 41.89 3.32
32 33 2.416547 CGCTGGGACATAACAAAGTCTG 59.583 50.000 0.00 0.00 38.20 3.51
33 34 2.615493 CCGCTGGGACATAACAAAGTCT 60.615 50.000 0.00 0.00 38.20 3.24
34 35 1.737793 CCGCTGGGACATAACAAAGTC 59.262 52.381 0.00 0.00 38.20 3.01
35 36 1.821216 CCGCTGGGACATAACAAAGT 58.179 50.000 0.00 0.00 38.20 2.66
96 99 3.536570 TCAGACTACTGACATCGAGGAG 58.463 50.000 3.06 0.00 46.55 3.69
110 113 0.604511 TCAGCGTCGTGGTCAGACTA 60.605 55.000 0.00 0.00 36.53 2.59
113 116 1.897137 ACTCAGCGTCGTGGTCAGA 60.897 57.895 0.00 0.00 0.00 3.27
114 117 1.730902 CACTCAGCGTCGTGGTCAG 60.731 63.158 0.00 0.00 0.00 3.51
125 128 3.875510 AAGGGGCCAAGCACTCAGC 62.876 63.158 4.39 0.00 46.19 4.26
138 141 0.178964 TGGCCTTCACAAGAAAGGGG 60.179 55.000 3.32 0.00 32.35 4.79
158 161 7.286775 AGGCGGTAAATATATTCAAAACATGGT 59.713 33.333 0.00 0.00 0.00 3.55
217 223 3.898741 GAGGCAAAGCTACTAGGGACTAT 59.101 47.826 0.00 0.00 41.70 2.12
219 225 2.112190 GAGGCAAAGCTACTAGGGACT 58.888 52.381 0.00 0.00 46.37 3.85
221 227 2.552093 AGAGGCAAAGCTACTAGGGA 57.448 50.000 0.00 0.00 0.00 4.20
231 237 0.514691 GCTCACGTGAAGAGGCAAAG 59.485 55.000 20.49 5.50 33.72 2.77
233 239 4.361253 GCTCACGTGAAGAGGCAA 57.639 55.556 20.49 0.00 33.72 4.52
236 242 0.734253 CGAAGGCTCACGTGAAGAGG 60.734 60.000 20.49 8.96 33.72 3.69
237 243 0.241213 TCGAAGGCTCACGTGAAGAG 59.759 55.000 20.49 9.35 36.21 2.85
238 244 0.039437 GTCGAAGGCTCACGTGAAGA 60.039 55.000 20.49 9.17 0.00 2.87
239 245 1.337817 CGTCGAAGGCTCACGTGAAG 61.338 60.000 20.49 14.27 0.00 3.02
240 246 1.371267 CGTCGAAGGCTCACGTGAA 60.371 57.895 20.49 0.00 0.00 3.18
241 247 2.254350 CGTCGAAGGCTCACGTGA 59.746 61.111 18.88 18.88 0.00 4.35
242 248 2.081212 GTCGTCGAAGGCTCACGTG 61.081 63.158 9.94 9.94 35.05 4.49
243 249 2.254651 GTCGTCGAAGGCTCACGT 59.745 61.111 11.81 0.00 35.05 4.49
244 250 2.870161 CGTCGTCGAAGGCTCACG 60.870 66.667 0.65 7.15 39.71 4.35
245 251 2.504244 CCGTCGTCGAAGGCTCAC 60.504 66.667 14.33 0.00 39.71 3.51
362 375 3.692406 GCTGGACTCGTCGGGGTT 61.692 66.667 0.00 0.00 0.00 4.11
389 402 3.948086 GACTCGACGCGTGGGACTG 62.948 68.421 20.70 9.58 0.00 3.51
398 411 1.843734 CTCCCGGATAGACTCGACGC 61.844 65.000 0.73 0.00 0.00 5.19
411 470 2.683362 GGAAAGCTTATTGAACTCCCGG 59.317 50.000 0.00 0.00 0.00 5.73
503 562 0.546507 TGGTGGTGTCCATGGAGCTA 60.547 55.000 16.81 6.44 35.28 3.32
563 622 0.764369 AGACAGACAAGGTGGAGCCA 60.764 55.000 0.00 0.00 40.61 4.75
570 629 1.598130 GCGGCAAGACAGACAAGGT 60.598 57.895 0.00 0.00 0.00 3.50
591 650 2.032528 TTGGGAAGCGTGCTCCAG 59.967 61.111 0.00 0.00 0.00 3.86
598 657 0.600255 CTCGAACACTTGGGAAGCGT 60.600 55.000 0.00 0.00 0.00 5.07
604 663 2.293122 TGCATTTTCTCGAACACTTGGG 59.707 45.455 0.00 0.00 0.00 4.12
629 688 6.569179 AGCGGAGTAAAACATACAATTTGT 57.431 33.333 7.30 7.30 0.00 2.83
639 698 6.941436 TCCCTTAAATTTAGCGGAGTAAAACA 59.059 34.615 14.07 0.00 0.00 2.83
700 835 1.137675 AGTATCCGGCCCGAGTAAAAC 59.862 52.381 3.71 0.00 0.00 2.43
754 901 6.735130 AGTTAGAAAATTTGTCCGAGGTTTG 58.265 36.000 0.00 0.00 0.00 2.93
755 902 6.954487 AGTTAGAAAATTTGTCCGAGGTTT 57.046 33.333 0.00 0.00 0.00 3.27
757 904 6.296803 AGAAGTTAGAAAATTTGTCCGAGGT 58.703 36.000 0.00 0.00 0.00 3.85
758 905 6.651225 AGAGAAGTTAGAAAATTTGTCCGAGG 59.349 38.462 0.00 0.00 28.32 4.63
759 906 7.659652 AGAGAAGTTAGAAAATTTGTCCGAG 57.340 36.000 0.00 0.00 28.32 4.63
788 953 4.857130 TGGCTAACCTCTAGAGTCTACA 57.143 45.455 18.42 6.95 36.63 2.74
789 954 6.527057 TTTTGGCTAACCTCTAGAGTCTAC 57.473 41.667 18.42 4.06 36.63 2.59
790 955 7.735326 AATTTTGGCTAACCTCTAGAGTCTA 57.265 36.000 18.42 8.18 36.63 2.59
791 956 6.628644 AATTTTGGCTAACCTCTAGAGTCT 57.371 37.500 18.42 7.45 36.63 3.24
792 957 6.879458 TCAAATTTTGGCTAACCTCTAGAGTC 59.121 38.462 18.42 0.00 36.63 3.36
793 958 6.779860 TCAAATTTTGGCTAACCTCTAGAGT 58.220 36.000 18.42 3.58 36.63 3.24
794 959 7.687941 TTCAAATTTTGGCTAACCTCTAGAG 57.312 36.000 13.18 13.18 36.63 2.43
822 987 3.904800 AAAGGAAGTTTGTGTTTGGGG 57.095 42.857 0.00 0.00 0.00 4.96
847 1012 5.987777 TGTGTGATTTCAAATTTTGGCTG 57.012 34.783 9.18 0.00 0.00 4.85
864 1030 2.360553 TGCAGGTTTGTGTTTGTGTG 57.639 45.000 0.00 0.00 0.00 3.82
881 1047 2.209273 ACGTTGGAATTTGGCTTTTGC 58.791 42.857 0.00 0.00 46.64 3.68
898 1064 1.878953 CTGACTTGTTTGGGCTACGT 58.121 50.000 0.00 0.00 0.00 3.57
903 1069 1.032014 TCTTGCTGACTTGTTTGGGC 58.968 50.000 0.00 0.00 0.00 5.36
1411 1581 0.745468 GGAAGCAGTAGACGGGGTAG 59.255 60.000 0.00 0.00 0.00 3.18
1412 1582 0.040058 TGGAAGCAGTAGACGGGGTA 59.960 55.000 0.00 0.00 0.00 3.69
1418 1588 4.258702 TCAGTTCTTGGAAGCAGTAGAC 57.741 45.455 0.00 0.00 0.00 2.59
1419 1589 4.955811 TTCAGTTCTTGGAAGCAGTAGA 57.044 40.909 0.00 0.00 0.00 2.59
1420 1590 5.618640 GCAATTCAGTTCTTGGAAGCAGTAG 60.619 44.000 0.00 0.00 0.00 2.57
1680 1930 5.983540 ACAGTGATAAGGATCCAGAAGAAC 58.016 41.667 15.82 5.00 0.00 3.01
1740 1997 1.541379 TACTTGAGCTAGCGTCACCA 58.459 50.000 9.55 1.04 0.00 4.17
1745 2002 2.168496 TCAGGTTACTTGAGCTAGCGT 58.832 47.619 9.55 3.50 0.00 5.07
1748 2005 4.464597 AGGAGTTCAGGTTACTTGAGCTAG 59.535 45.833 13.09 0.00 0.00 3.42
1774 2031 0.321996 AGAACCGAGAAACTCTGCCC 59.678 55.000 0.00 0.00 0.00 5.36
1775 2032 1.000955 TCAGAACCGAGAAACTCTGCC 59.999 52.381 0.00 0.00 36.15 4.85
1788 2045 2.553602 TGCACACACATGATTCAGAACC 59.446 45.455 0.00 0.00 0.00 3.62
1822 2079 5.461032 AAAATGCCTGAACGGTTCAATTA 57.539 34.783 22.60 12.57 39.58 1.40
1828 2085 4.086457 AGGAATAAAATGCCTGAACGGTT 58.914 39.130 0.00 0.00 34.25 4.44
1836 2093 7.364149 TGCATATTTCAGGAATAAAATGCCT 57.636 32.000 5.51 0.00 34.82 4.75
1864 2121 2.116869 TCTATATGGGAGGCCTGCAA 57.883 50.000 26.95 16.71 0.00 4.08
1869 2126 5.249420 GTTCTTTGATCTATATGGGAGGCC 58.751 45.833 0.00 0.00 0.00 5.19
1873 2130 5.152193 TCCGGTTCTTTGATCTATATGGGA 58.848 41.667 0.00 0.00 0.00 4.37
1879 2136 2.693591 TCGCTCCGGTTCTTTGATCTAT 59.306 45.455 0.00 0.00 0.00 1.98
1881 2138 0.895530 TCGCTCCGGTTCTTTGATCT 59.104 50.000 0.00 0.00 0.00 2.75
1887 2144 0.963962 TTACAGTCGCTCCGGTTCTT 59.036 50.000 0.00 0.00 0.00 2.52
1890 2147 1.549170 AGATTTACAGTCGCTCCGGTT 59.451 47.619 0.00 0.00 0.00 4.44
1894 2151 3.117046 GCTACAGATTTACAGTCGCTCC 58.883 50.000 0.00 0.00 0.00 4.70
1922 2179 7.013274 TGGATTGAGTGGTACAGAAAGAAAAAG 59.987 37.037 0.00 0.00 41.80 2.27
1926 2183 5.551233 CTGGATTGAGTGGTACAGAAAGAA 58.449 41.667 0.00 0.00 41.80 2.52
1937 2194 0.681887 TGGCATGCTGGATTGAGTGG 60.682 55.000 18.92 0.00 0.00 4.00
1938 2195 0.738975 CTGGCATGCTGGATTGAGTG 59.261 55.000 18.92 0.00 0.00 3.51
1939 2196 0.330604 ACTGGCATGCTGGATTGAGT 59.669 50.000 18.92 5.65 0.00 3.41
1940 2197 1.022735 GACTGGCATGCTGGATTGAG 58.977 55.000 18.92 5.05 0.00 3.02
1941 2198 0.328926 TGACTGGCATGCTGGATTGA 59.671 50.000 18.92 0.00 0.00 2.57
1942 2199 1.399714 ATGACTGGCATGCTGGATTG 58.600 50.000 18.92 4.33 35.42 2.67
1943 2200 2.154567 AATGACTGGCATGCTGGATT 57.845 45.000 18.92 10.34 37.28 3.01
1944 2201 3.301794 TTAATGACTGGCATGCTGGAT 57.698 42.857 18.92 0.38 37.28 3.41
1945 2202 2.804986 TTAATGACTGGCATGCTGGA 57.195 45.000 18.92 0.83 37.28 3.86
1946 2203 4.395959 AATTTAATGACTGGCATGCTGG 57.604 40.909 18.92 12.84 37.28 4.85
1947 2204 6.741109 TGATAATTTAATGACTGGCATGCTG 58.259 36.000 18.92 13.27 37.28 4.41
1948 2205 6.964807 TGATAATTTAATGACTGGCATGCT 57.035 33.333 18.92 0.00 37.28 3.79
1949 2206 9.865321 ATATTGATAATTTAATGACTGGCATGC 57.135 29.630 9.90 9.90 37.28 4.06
1952 2209 9.023962 GGGATATTGATAATTTAATGACTGGCA 57.976 33.333 0.00 0.00 0.00 4.92
1953 2210 8.184192 CGGGATATTGATAATTTAATGACTGGC 58.816 37.037 0.00 0.00 0.00 4.85
1954 2211 8.677300 CCGGGATATTGATAATTTAATGACTGG 58.323 37.037 0.00 0.00 0.00 4.00
1955 2212 9.231297 ACCGGGATATTGATAATTTAATGACTG 57.769 33.333 6.32 0.00 0.00 3.51
1956 2213 9.231297 CACCGGGATATTGATAATTTAATGACT 57.769 33.333 6.32 0.00 0.00 3.41
1957 2214 8.458843 CCACCGGGATATTGATAATTTAATGAC 58.541 37.037 6.32 0.00 35.59 3.06
1958 2215 7.122055 GCCACCGGGATATTGATAATTTAATGA 59.878 37.037 6.32 0.00 35.59 2.57
1959 2216 7.093988 TGCCACCGGGATATTGATAATTTAATG 60.094 37.037 6.32 0.00 35.59 1.90
1960 2217 6.951198 TGCCACCGGGATATTGATAATTTAAT 59.049 34.615 6.32 0.00 35.59 1.40
1961 2218 6.307776 TGCCACCGGGATATTGATAATTTAA 58.692 36.000 6.32 0.00 35.59 1.52
1962 2219 5.882040 TGCCACCGGGATATTGATAATTTA 58.118 37.500 6.32 0.00 35.59 1.40
1963 2220 4.735369 TGCCACCGGGATATTGATAATTT 58.265 39.130 6.32 0.00 35.59 1.82
1964 2221 4.335416 CTGCCACCGGGATATTGATAATT 58.665 43.478 6.32 0.00 35.59 1.40
1965 2222 3.308402 CCTGCCACCGGGATATTGATAAT 60.308 47.826 6.32 0.00 40.14 1.28
1966 2223 2.039746 CCTGCCACCGGGATATTGATAA 59.960 50.000 6.32 0.00 40.14 1.75
1967 2224 1.628340 CCTGCCACCGGGATATTGATA 59.372 52.381 6.32 0.00 40.14 2.15
1968 2225 0.401738 CCTGCCACCGGGATATTGAT 59.598 55.000 6.32 0.00 40.14 2.57
1969 2226 0.692756 TCCTGCCACCGGGATATTGA 60.693 55.000 6.32 0.00 41.66 2.57
1970 2227 0.182537 TTCCTGCCACCGGGATATTG 59.817 55.000 6.32 0.00 45.81 1.90
1971 2228 0.923358 TTTCCTGCCACCGGGATATT 59.077 50.000 6.32 0.00 45.81 1.28
1972 2229 0.474184 CTTTCCTGCCACCGGGATAT 59.526 55.000 6.32 0.00 45.81 1.63
1973 2230 0.619255 TCTTTCCTGCCACCGGGATA 60.619 55.000 6.32 0.00 45.81 2.59
1974 2231 1.497309 TTCTTTCCTGCCACCGGGAT 61.497 55.000 6.32 0.00 45.81 3.85
1975 2232 1.710996 TTTCTTTCCTGCCACCGGGA 61.711 55.000 6.32 0.00 44.87 5.14
1976 2233 1.228429 TTTCTTTCCTGCCACCGGG 60.228 57.895 6.32 0.00 38.98 5.73
1977 2234 0.250727 TCTTTCTTTCCTGCCACCGG 60.251 55.000 0.00 0.00 0.00 5.28
1978 2235 1.604604 TTCTTTCTTTCCTGCCACCG 58.395 50.000 0.00 0.00 0.00 4.94
1979 2236 4.400529 TTTTTCTTTCTTTCCTGCCACC 57.599 40.909 0.00 0.00 0.00 4.61
1980 2237 5.234972 CACATTTTTCTTTCTTTCCTGCCAC 59.765 40.000 0.00 0.00 0.00 5.01
1981 2238 5.128499 TCACATTTTTCTTTCTTTCCTGCCA 59.872 36.000 0.00 0.00 0.00 4.92
1982 2239 5.600696 TCACATTTTTCTTTCTTTCCTGCC 58.399 37.500 0.00 0.00 0.00 4.85
1983 2240 7.064490 TGTTTCACATTTTTCTTTCTTTCCTGC 59.936 33.333 0.00 0.00 0.00 4.85
1984 2241 8.382875 GTGTTTCACATTTTTCTTTCTTTCCTG 58.617 33.333 0.00 0.00 34.08 3.86
1985 2242 7.275560 CGTGTTTCACATTTTTCTTTCTTTCCT 59.724 33.333 1.00 0.00 33.40 3.36
1986 2243 7.391016 CGTGTTTCACATTTTTCTTTCTTTCC 58.609 34.615 1.00 0.00 33.40 3.13
1987 2244 7.274686 TCCGTGTTTCACATTTTTCTTTCTTTC 59.725 33.333 1.00 0.00 33.40 2.62
1988 2245 7.093992 TCCGTGTTTCACATTTTTCTTTCTTT 58.906 30.769 1.00 0.00 33.40 2.52
1989 2246 6.626302 TCCGTGTTTCACATTTTTCTTTCTT 58.374 32.000 1.00 0.00 33.40 2.52
1990 2247 6.202516 TCCGTGTTTCACATTTTTCTTTCT 57.797 33.333 1.00 0.00 33.40 2.52
1991 2248 7.463469 AATCCGTGTTTCACATTTTTCTTTC 57.537 32.000 1.00 0.00 33.40 2.62
1992 2249 7.841915 AAATCCGTGTTTCACATTTTTCTTT 57.158 28.000 1.00 0.00 33.40 2.52
1993 2250 8.813282 GTTAAATCCGTGTTTCACATTTTTCTT 58.187 29.630 1.00 0.00 33.40 2.52
1994 2251 8.194769 AGTTAAATCCGTGTTTCACATTTTTCT 58.805 29.630 1.00 1.16 33.40 2.52
1995 2252 8.265998 CAGTTAAATCCGTGTTTCACATTTTTC 58.734 33.333 1.00 0.00 33.40 2.29
1996 2253 7.762159 ACAGTTAAATCCGTGTTTCACATTTTT 59.238 29.630 1.00 0.31 33.40 1.94
1997 2254 7.262048 ACAGTTAAATCCGTGTTTCACATTTT 58.738 30.769 1.00 0.59 33.40 1.82
1998 2255 6.801575 ACAGTTAAATCCGTGTTTCACATTT 58.198 32.000 1.00 3.07 33.40 2.32
1999 2256 6.385649 ACAGTTAAATCCGTGTTTCACATT 57.614 33.333 1.00 0.00 33.40 2.71
2000 2257 7.148306 GGATACAGTTAAATCCGTGTTTCACAT 60.148 37.037 1.00 0.00 32.79 3.21
2001 2258 6.148150 GGATACAGTTAAATCCGTGTTTCACA 59.852 38.462 1.00 0.00 32.79 3.58
2002 2259 6.402875 GGGATACAGTTAAATCCGTGTTTCAC 60.403 42.308 0.00 0.00 42.28 3.18
2003 2260 5.644636 GGGATACAGTTAAATCCGTGTTTCA 59.355 40.000 0.00 0.00 42.28 2.69
2004 2261 5.644636 TGGGATACAGTTAAATCCGTGTTTC 59.355 40.000 0.00 0.00 42.28 2.78
2005 2262 5.562635 TGGGATACAGTTAAATCCGTGTTT 58.437 37.500 0.00 0.00 42.28 2.83
2006 2263 5.168647 TGGGATACAGTTAAATCCGTGTT 57.831 39.130 0.00 0.00 42.28 3.32
2007 2264 4.829872 TGGGATACAGTTAAATCCGTGT 57.170 40.909 0.00 0.00 42.28 4.49
2008 2265 5.413213 TGTTTGGGATACAGTTAAATCCGTG 59.587 40.000 0.00 0.00 42.28 4.94
2009 2266 5.562635 TGTTTGGGATACAGTTAAATCCGT 58.437 37.500 0.00 0.00 42.28 4.69
2010 2267 6.693315 ATGTTTGGGATACAGTTAAATCCG 57.307 37.500 0.00 0.00 42.28 4.18
2011 2268 8.747538 AGTATGTTTGGGATACAGTTAAATCC 57.252 34.615 0.00 0.00 40.89 3.01
2043 2300 8.673711 GGATATATGTAACAGAAAGCACAAACA 58.326 33.333 0.00 0.00 0.00 2.83
2044 2301 8.673711 TGGATATATGTAACAGAAAGCACAAAC 58.326 33.333 0.00 0.00 0.00 2.93
2045 2302 8.800370 TGGATATATGTAACAGAAAGCACAAA 57.200 30.769 0.00 0.00 0.00 2.83
2046 2303 8.673711 GTTGGATATATGTAACAGAAAGCACAA 58.326 33.333 0.00 0.00 0.00 3.33
2047 2304 8.046708 AGTTGGATATATGTAACAGAAAGCACA 58.953 33.333 9.93 0.00 0.00 4.57
2048 2305 8.438676 AGTTGGATATATGTAACAGAAAGCAC 57.561 34.615 9.93 0.00 0.00 4.40
2049 2306 9.764363 CTAGTTGGATATATGTAACAGAAAGCA 57.236 33.333 9.93 0.00 0.00 3.91
2050 2307 9.982651 TCTAGTTGGATATATGTAACAGAAAGC 57.017 33.333 9.93 0.00 0.00 3.51
2067 2324 9.760926 AGATAGTCATGCTTATATCTAGTTGGA 57.239 33.333 6.89 0.00 34.11 3.53
2068 2325 9.800433 CAGATAGTCATGCTTATATCTAGTTGG 57.200 37.037 7.86 0.00 34.11 3.77
2110 2367 9.016438 GGGAAAGTAGGTATTGATAACAAACAA 57.984 33.333 0.00 0.00 39.54 2.83
2111 2368 8.387813 AGGGAAAGTAGGTATTGATAACAAACA 58.612 33.333 0.00 0.00 39.54 2.83
2112 2369 8.803397 AGGGAAAGTAGGTATTGATAACAAAC 57.197 34.615 0.00 0.00 39.54 2.93
2114 2371 7.404980 AGGAGGGAAAGTAGGTATTGATAACAA 59.595 37.037 0.00 0.00 40.42 2.83
2115 2372 6.906901 AGGAGGGAAAGTAGGTATTGATAACA 59.093 38.462 0.00 0.00 0.00 2.41
2116 2373 7.290481 AGAGGAGGGAAAGTAGGTATTGATAAC 59.710 40.741 0.00 0.00 0.00 1.89
2118 2375 6.935036 AGAGGAGGGAAAGTAGGTATTGATA 58.065 40.000 0.00 0.00 0.00 2.15
2119 2376 5.793967 AGAGGAGGGAAAGTAGGTATTGAT 58.206 41.667 0.00 0.00 0.00 2.57
2120 2377 5.222278 AGAGGAGGGAAAGTAGGTATTGA 57.778 43.478 0.00 0.00 0.00 2.57
2121 2378 5.675538 CAAGAGGAGGGAAAGTAGGTATTG 58.324 45.833 0.00 0.00 0.00 1.90
2122 2379 4.164413 GCAAGAGGAGGGAAAGTAGGTATT 59.836 45.833 0.00 0.00 0.00 1.89
2123 2380 3.712218 GCAAGAGGAGGGAAAGTAGGTAT 59.288 47.826 0.00 0.00 0.00 2.73
2124 2381 3.105283 GCAAGAGGAGGGAAAGTAGGTA 58.895 50.000 0.00 0.00 0.00 3.08
2125 2382 1.909986 GCAAGAGGAGGGAAAGTAGGT 59.090 52.381 0.00 0.00 0.00 3.08
2126 2383 1.909302 TGCAAGAGGAGGGAAAGTAGG 59.091 52.381 0.00 0.00 0.00 3.18
2127 2384 3.703001 TTGCAAGAGGAGGGAAAGTAG 57.297 47.619 0.00 0.00 0.00 2.57
2128 2385 4.142038 GTTTTGCAAGAGGAGGGAAAGTA 58.858 43.478 0.00 0.00 0.00 2.24
2129 2386 2.959030 GTTTTGCAAGAGGAGGGAAAGT 59.041 45.455 0.00 0.00 0.00 2.66
2130 2387 2.958355 TGTTTTGCAAGAGGAGGGAAAG 59.042 45.455 0.00 0.00 0.00 2.62
2131 2388 3.025322 TGTTTTGCAAGAGGAGGGAAA 57.975 42.857 0.00 0.00 0.00 3.13
2132 2389 2.746279 TGTTTTGCAAGAGGAGGGAA 57.254 45.000 0.00 0.00 0.00 3.97
2133 2390 2.978156 ATGTTTTGCAAGAGGAGGGA 57.022 45.000 0.00 0.00 0.00 4.20
2134 2391 3.690460 ACTATGTTTTGCAAGAGGAGGG 58.310 45.455 0.00 0.00 0.00 4.30
2135 2392 5.335976 GGAAACTATGTTTTGCAAGAGGAGG 60.336 44.000 0.00 0.00 0.00 4.30
2136 2393 5.335976 GGGAAACTATGTTTTGCAAGAGGAG 60.336 44.000 0.00 0.00 0.00 3.69
2145 2402 4.202202 TGGCAACAGGGAAACTATGTTTTG 60.202 41.667 0.00 0.00 46.17 2.44
2176 2450 3.521560 GCACCATCGATCTGAACTTACA 58.478 45.455 0.00 0.00 0.00 2.41
2182 2456 1.554617 TGAAGGCACCATCGATCTGAA 59.445 47.619 0.00 0.00 0.00 3.02
2183 2457 1.194218 TGAAGGCACCATCGATCTGA 58.806 50.000 0.00 0.00 0.00 3.27
2189 2463 3.270027 TCATTAGTTGAAGGCACCATCG 58.730 45.455 0.00 0.00 0.00 3.84
2194 2468 3.270877 ACGGATCATTAGTTGAAGGCAC 58.729 45.455 0.00 0.00 38.03 5.01
2200 2474 5.452776 GGACCACATACGGATCATTAGTTGA 60.453 44.000 0.00 0.00 39.12 3.18
2201 2475 4.750098 GGACCACATACGGATCATTAGTTG 59.250 45.833 0.00 0.00 0.00 3.16
2209 2483 0.031721 GGTCGGACCACATACGGATC 59.968 60.000 22.10 0.00 38.42 3.36
2237 2511 8.693401 CATGATCATGTAGCCATAGTCAGGCA 62.693 46.154 24.87 0.00 42.83 4.75
2257 2546 0.813184 CAAAGCACCTTCGGCATGAT 59.187 50.000 0.00 0.00 0.00 2.45
2258 2547 0.250684 TCAAAGCACCTTCGGCATGA 60.251 50.000 0.00 0.00 0.00 3.07
2264 2553 3.498397 ACAAGTACATCAAAGCACCTTCG 59.502 43.478 0.00 0.00 0.00 3.79
2302 2591 6.414732 TCAAGATGGACCTGTAAAAGTATGG 58.585 40.000 0.00 0.00 0.00 2.74
2309 2598 4.922206 AGCATTCAAGATGGACCTGTAAA 58.078 39.130 0.00 0.00 0.00 2.01
2312 2601 2.575279 AGAGCATTCAAGATGGACCTGT 59.425 45.455 0.00 0.00 0.00 4.00
2338 2628 3.305199 GGTATAGTTACCCTGCTGCTACG 60.305 52.174 0.00 0.00 41.91 3.51
2351 2641 9.113838 CGAAGTAGGAGTAACAAGGTATAGTTA 57.886 37.037 0.00 0.00 0.00 2.24
2352 2642 7.613411 ACGAAGTAGGAGTAACAAGGTATAGTT 59.387 37.037 0.00 0.00 41.94 2.24
2362 2652 2.029649 GTGCCACGAAGTAGGAGTAACA 60.030 50.000 0.00 0.00 41.61 2.41
2373 2663 1.511850 TGATCTTGTGTGCCACGAAG 58.488 50.000 0.00 1.02 37.14 3.79
2377 2667 0.171903 GCCATGATCTTGTGTGCCAC 59.828 55.000 7.73 0.00 34.56 5.01
2400 2690 0.325671 TCGCTTCTCCCTCCCAGATT 60.326 55.000 0.00 0.00 0.00 2.40
2417 2707 6.019479 GGATTAAGCATTTAGTCACAGAGTCG 60.019 42.308 0.00 0.00 29.67 4.18
2419 2709 6.820656 CAGGATTAAGCATTTAGTCACAGAGT 59.179 38.462 0.00 0.00 29.67 3.24
2422 2712 6.992063 ACAGGATTAAGCATTTAGTCACAG 57.008 37.500 0.00 0.00 29.67 3.66
2423 2713 7.552687 CCTTACAGGATTAAGCATTTAGTCACA 59.447 37.037 0.00 0.00 37.67 3.58
2424 2714 7.553044 ACCTTACAGGATTAAGCATTTAGTCAC 59.447 37.037 0.00 0.00 37.67 3.67
2428 2718 9.561069 ACATACCTTACAGGATTAAGCATTTAG 57.439 33.333 0.00 0.00 37.67 1.85
2430 2720 8.823220 AACATACCTTACAGGATTAAGCATTT 57.177 30.769 0.00 0.00 37.67 2.32
2431 2721 8.823220 AAACATACCTTACAGGATTAAGCATT 57.177 30.769 0.00 0.00 37.67 3.56
2444 2734 8.562052 TCTTCGAAAAGGAAAAACATACCTTAC 58.438 33.333 0.00 0.00 42.25 2.34
2445 2735 8.680039 TCTTCGAAAAGGAAAAACATACCTTA 57.320 30.769 0.00 0.00 42.25 2.69
2446 2736 7.576861 TCTTCGAAAAGGAAAAACATACCTT 57.423 32.000 0.00 0.00 44.53 3.50
2457 2748 5.575218 GCTTTTGTGTTTCTTCGAAAAGGAA 59.425 36.000 0.00 0.00 35.23 3.36
2460 2751 6.307800 TGAAGCTTTTGTGTTTCTTCGAAAAG 59.692 34.615 0.00 0.00 36.77 2.27
2498 2789 7.769044 AGAGCTTACACAGTCTTTTCTTAACAA 59.231 33.333 0.00 0.00 0.00 2.83
2504 2795 7.272978 TGTTTAGAGCTTACACAGTCTTTTCT 58.727 34.615 0.00 0.00 0.00 2.52
2505 2796 7.478520 TGTTTAGAGCTTACACAGTCTTTTC 57.521 36.000 0.00 0.00 0.00 2.29
2509 2800 7.715249 TGAAATTGTTTAGAGCTTACACAGTCT 59.285 33.333 0.00 0.00 0.00 3.24
2510 2801 7.861630 TGAAATTGTTTAGAGCTTACACAGTC 58.138 34.615 0.00 0.00 0.00 3.51
2511 2802 7.801716 TGAAATTGTTTAGAGCTTACACAGT 57.198 32.000 0.00 0.00 0.00 3.55
2512 2803 9.683069 AAATGAAATTGTTTAGAGCTTACACAG 57.317 29.630 0.00 0.00 36.10 3.66
2562 2853 3.581332 TGCTAGTATGGGTTGGTATAGCC 59.419 47.826 0.00 0.00 34.63 3.93
2563 2854 4.884668 TGCTAGTATGGGTTGGTATAGC 57.115 45.455 0.00 0.00 35.78 2.97
2564 2855 9.383519 CAATAATGCTAGTATGGGTTGGTATAG 57.616 37.037 0.00 0.00 0.00 1.31
2565 2856 8.325787 CCAATAATGCTAGTATGGGTTGGTATA 58.674 37.037 16.90 0.00 31.37 1.47
2566 2857 7.175104 CCAATAATGCTAGTATGGGTTGGTAT 58.825 38.462 16.90 0.71 31.37 2.73
2567 2858 6.466615 CCCAATAATGCTAGTATGGGTTGGTA 60.467 42.308 20.42 1.76 33.50 3.25
2568 2859 5.385198 CCAATAATGCTAGTATGGGTTGGT 58.615 41.667 16.90 0.00 31.37 3.67
2569 2860 4.766891 CCCAATAATGCTAGTATGGGTTGG 59.233 45.833 17.63 17.63 34.76 3.77
2570 2861 4.218417 GCCCAATAATGCTAGTATGGGTTG 59.782 45.833 15.99 10.83 37.64 3.77
2571 2862 4.407365 GCCCAATAATGCTAGTATGGGTT 58.593 43.478 15.99 0.81 37.64 4.11
2572 2863 3.559171 CGCCCAATAATGCTAGTATGGGT 60.559 47.826 15.99 0.00 37.64 4.51
2573 2864 3.009723 CGCCCAATAATGCTAGTATGGG 58.990 50.000 11.73 11.73 38.32 4.00
2574 2865 3.674997 ACGCCCAATAATGCTAGTATGG 58.325 45.455 0.00 0.00 0.00 2.74
2575 2866 5.351465 CCTAACGCCCAATAATGCTAGTATG 59.649 44.000 0.00 0.00 0.00 2.39
2576 2867 5.488341 CCTAACGCCCAATAATGCTAGTAT 58.512 41.667 0.00 0.00 0.00 2.12
2577 2868 4.262721 CCCTAACGCCCAATAATGCTAGTA 60.263 45.833 0.00 0.00 0.00 1.82
2578 2869 3.496160 CCCTAACGCCCAATAATGCTAGT 60.496 47.826 0.00 0.00 0.00 2.57
2579 2870 3.074412 CCCTAACGCCCAATAATGCTAG 58.926 50.000 0.00 0.00 0.00 3.42
2580 2871 2.706723 TCCCTAACGCCCAATAATGCTA 59.293 45.455 0.00 0.00 0.00 3.49
2581 2872 1.493022 TCCCTAACGCCCAATAATGCT 59.507 47.619 0.00 0.00 0.00 3.79
2582 2873 1.975660 TCCCTAACGCCCAATAATGC 58.024 50.000 0.00 0.00 0.00 3.56
2583 2874 2.293399 GCTTCCCTAACGCCCAATAATG 59.707 50.000 0.00 0.00 0.00 1.90
2584 2875 2.174854 AGCTTCCCTAACGCCCAATAAT 59.825 45.455 0.00 0.00 0.00 1.28
2585 2876 1.562475 AGCTTCCCTAACGCCCAATAA 59.438 47.619 0.00 0.00 0.00 1.40
2586 2877 1.134220 CAGCTTCCCTAACGCCCAATA 60.134 52.381 0.00 0.00 0.00 1.90
2587 2878 0.394352 CAGCTTCCCTAACGCCCAAT 60.394 55.000 0.00 0.00 0.00 3.16
2588 2879 1.002624 CAGCTTCCCTAACGCCCAA 60.003 57.895 0.00 0.00 0.00 4.12
2589 2880 2.668632 CAGCTTCCCTAACGCCCA 59.331 61.111 0.00 0.00 0.00 5.36
2590 2881 1.619807 TACCAGCTTCCCTAACGCCC 61.620 60.000 0.00 0.00 0.00 6.13
2591 2882 0.468648 ATACCAGCTTCCCTAACGCC 59.531 55.000 0.00 0.00 0.00 5.68
2592 2883 1.583054 CATACCAGCTTCCCTAACGC 58.417 55.000 0.00 0.00 0.00 4.84
2593 2884 1.134521 TGCATACCAGCTTCCCTAACG 60.135 52.381 0.00 0.00 34.99 3.18
2594 2885 2.092914 ACTGCATACCAGCTTCCCTAAC 60.093 50.000 0.00 0.00 45.78 2.34
2595 2886 2.196595 ACTGCATACCAGCTTCCCTAA 58.803 47.619 0.00 0.00 45.78 2.69
2596 2887 1.879575 ACTGCATACCAGCTTCCCTA 58.120 50.000 0.00 0.00 45.78 3.53
2597 2888 0.995024 AACTGCATACCAGCTTCCCT 59.005 50.000 0.00 0.00 45.78 4.20
2598 2889 1.474077 CAAACTGCATACCAGCTTCCC 59.526 52.381 0.00 0.00 45.78 3.97
2599 2890 1.135286 GCAAACTGCATACCAGCTTCC 60.135 52.381 0.00 0.00 45.78 3.46
2600 2891 2.268730 GCAAACTGCATACCAGCTTC 57.731 50.000 0.00 0.00 45.78 3.86
2611 2902 1.256812 ATGGGGTACAAGCAAACTGC 58.743 50.000 0.00 0.00 45.46 4.40
2612 2903 4.335400 AAAATGGGGTACAAGCAAACTG 57.665 40.909 0.00 0.00 0.00 3.16
2613 2904 4.653801 AGAAAAATGGGGTACAAGCAAACT 59.346 37.500 0.00 0.00 0.00 2.66
2614 2905 4.956085 AGAAAAATGGGGTACAAGCAAAC 58.044 39.130 0.00 0.00 0.00 2.93
2615 2906 4.898861 AGAGAAAAATGGGGTACAAGCAAA 59.101 37.500 0.00 0.00 0.00 3.68
2616 2907 4.479158 AGAGAAAAATGGGGTACAAGCAA 58.521 39.130 0.00 0.00 0.00 3.91
2617 2908 4.112634 AGAGAAAAATGGGGTACAAGCA 57.887 40.909 0.00 0.00 0.00 3.91
2618 2909 5.468540 AAAGAGAAAAATGGGGTACAAGC 57.531 39.130 0.00 0.00 0.00 4.01
2619 2910 7.415206 CGGATAAAGAGAAAAATGGGGTACAAG 60.415 40.741 0.00 0.00 0.00 3.16
2620 2911 6.376018 CGGATAAAGAGAAAAATGGGGTACAA 59.624 38.462 0.00 0.00 0.00 2.41
2621 2912 5.883673 CGGATAAAGAGAAAAATGGGGTACA 59.116 40.000 0.00 0.00 0.00 2.90
2622 2913 5.884232 ACGGATAAAGAGAAAAATGGGGTAC 59.116 40.000 0.00 0.00 0.00 3.34
2623 2914 6.069705 ACGGATAAAGAGAAAAATGGGGTA 57.930 37.500 0.00 0.00 0.00 3.69
2624 2915 4.930696 ACGGATAAAGAGAAAAATGGGGT 58.069 39.130 0.00 0.00 0.00 4.95
2625 2916 5.650543 CAACGGATAAAGAGAAAAATGGGG 58.349 41.667 0.00 0.00 0.00 4.96
2626 2917 5.102313 GCAACGGATAAAGAGAAAAATGGG 58.898 41.667 0.00 0.00 0.00 4.00
2627 2918 5.954335 AGCAACGGATAAAGAGAAAAATGG 58.046 37.500 0.00 0.00 0.00 3.16
2628 2919 7.693951 CAGTAGCAACGGATAAAGAGAAAAATG 59.306 37.037 0.00 0.00 0.00 2.32
2629 2920 7.148239 CCAGTAGCAACGGATAAAGAGAAAAAT 60.148 37.037 0.00 0.00 0.00 1.82
2630 2921 6.148811 CCAGTAGCAACGGATAAAGAGAAAAA 59.851 38.462 0.00 0.00 0.00 1.94
2631 2922 5.642063 CCAGTAGCAACGGATAAAGAGAAAA 59.358 40.000 0.00 0.00 0.00 2.29
2632 2923 5.175859 CCAGTAGCAACGGATAAAGAGAAA 58.824 41.667 0.00 0.00 0.00 2.52
2633 2924 4.755411 CCAGTAGCAACGGATAAAGAGAA 58.245 43.478 0.00 0.00 0.00 2.87
2634 2925 4.386867 CCAGTAGCAACGGATAAAGAGA 57.613 45.455 0.00 0.00 0.00 3.10


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.