Multiple sequence alignment - TraesCS2D01G009600
BLAST Results
Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.
qseqid | sseqid | percentage.identical | alignment.length | no.mismatch | no.gap.openings | qstart | qend | sstart | send | evalue | bitscore | |
---|---|---|---|---|---|---|---|---|---|---|---|---|
0 | TraesCS2D01G009600 | chr2D | 100.000 | 7084 | 0 | 0 | 1 | 7084 | 5157690 | 5164773 | 0.000000e+00 | 13082.0 |
1 | TraesCS2D01G009600 | chr2D | 94.800 | 750 | 32 | 4 | 1 | 750 | 47657272 | 47656530 | 0.000000e+00 | 1162.0 |
2 | TraesCS2D01G009600 | chr2D | 81.022 | 274 | 44 | 8 | 6582 | 6854 | 610356612 | 610356878 | 2.000000e-50 | 211.0 |
3 | TraesCS2D01G009600 | chr2B | 95.602 | 3479 | 108 | 20 | 1690 | 5133 | 6315550 | 6312082 | 0.000000e+00 | 5535.0 |
4 | TraesCS2D01G009600 | chr2B | 90.579 | 1210 | 61 | 23 | 5313 | 6499 | 6311824 | 6310645 | 0.000000e+00 | 1554.0 |
5 | TraesCS2D01G009600 | chr2B | 91.592 | 559 | 32 | 6 | 868 | 1415 | 6316390 | 6315836 | 0.000000e+00 | 758.0 |
6 | TraesCS2D01G009600 | chr2B | 92.149 | 242 | 17 | 2 | 1413 | 1653 | 6315791 | 6315551 | 2.450000e-89 | 340.0 |
7 | TraesCS2D01G009600 | chr2B | 92.593 | 189 | 14 | 0 | 5129 | 5317 | 6312044 | 6311856 | 9.050000e-69 | 272.0 |
8 | TraesCS2D01G009600 | chr2B | 88.991 | 109 | 12 | 0 | 3569 | 3677 | 703596917 | 703596809 | 1.240000e-27 | 135.0 |
9 | TraesCS2D01G009600 | chr2A | 93.414 | 3538 | 139 | 46 | 1834 | 5317 | 3443148 | 3446645 | 0.000000e+00 | 5156.0 |
10 | TraesCS2D01G009600 | chr2A | 92.327 | 1199 | 70 | 14 | 5313 | 6499 | 3446677 | 3447865 | 0.000000e+00 | 1685.0 |
11 | TraesCS2D01G009600 | chr2A | 85.213 | 940 | 85 | 34 | 822 | 1723 | 3442225 | 3443148 | 0.000000e+00 | 917.0 |
12 | TraesCS2D01G009600 | chr2A | 87.909 | 397 | 45 | 1 | 4152 | 4545 | 726019870 | 726020266 | 1.390000e-126 | 464.0 |
13 | TraesCS2D01G009600 | chr2A | 87.817 | 394 | 45 | 1 | 4155 | 4545 | 695304486 | 695304093 | 6.480000e-125 | 459.0 |
14 | TraesCS2D01G009600 | chr2A | 85.788 | 387 | 47 | 5 | 4193 | 4576 | 214686199 | 214686580 | 3.080000e-108 | 403.0 |
15 | TraesCS2D01G009600 | chr2A | 93.991 | 233 | 9 | 4 | 6854 | 7084 | 3448240 | 3448469 | 1.460000e-91 | 348.0 |
16 | TraesCS2D01G009600 | chr2A | 90.377 | 239 | 14 | 4 | 6565 | 6795 | 3447978 | 3448215 | 8.930000e-79 | 305.0 |
17 | TraesCS2D01G009600 | chr2A | 91.743 | 109 | 9 | 0 | 3569 | 3677 | 214686085 | 214686193 | 1.230000e-32 | 152.0 |
18 | TraesCS2D01G009600 | chr5A | 95.067 | 750 | 30 | 6 | 1 | 750 | 612874907 | 612874165 | 0.000000e+00 | 1173.0 |
19 | TraesCS2D01G009600 | chr5A | 94.667 | 750 | 29 | 7 | 1 | 750 | 470149086 | 470148348 | 0.000000e+00 | 1153.0 |
20 | TraesCS2D01G009600 | chr5A | 83.594 | 128 | 15 | 5 | 6788 | 6909 | 245502281 | 245502154 | 1.610000e-21 | 115.0 |
21 | TraesCS2D01G009600 | chr6A | 91.892 | 518 | 29 | 9 | 1 | 512 | 364214359 | 364213849 | 0.000000e+00 | 712.0 |
22 | TraesCS2D01G009600 | chr1A | 87.597 | 387 | 42 | 3 | 4193 | 4576 | 523145217 | 523144834 | 1.810000e-120 | 444.0 |
23 | TraesCS2D01G009600 | chr1A | 86.528 | 386 | 46 | 3 | 4194 | 4576 | 524983514 | 524983896 | 3.060000e-113 | 420.0 |
24 | TraesCS2D01G009600 | chr1A | 88.983 | 118 | 13 | 0 | 3569 | 3686 | 523145332 | 523145215 | 5.730000e-31 | 147.0 |
25 | TraesCS2D01G009600 | chr1A | 90.826 | 109 | 10 | 0 | 3569 | 3677 | 524983399 | 524983507 | 5.730000e-31 | 147.0 |
26 | TraesCS2D01G009600 | chr3A | 85.316 | 395 | 45 | 4 | 4155 | 4546 | 655522964 | 655522580 | 5.150000e-106 | 396.0 |
27 | TraesCS2D01G009600 | chr3A | 85.795 | 176 | 23 | 2 | 1 | 176 | 463820655 | 463820828 | 1.210000e-42 | 185.0 |
28 | TraesCS2D01G009600 | chr3A | 91.743 | 109 | 9 | 0 | 3569 | 3677 | 588140314 | 588140206 | 1.230000e-32 | 152.0 |
29 | TraesCS2D01G009600 | chr1B | 95.798 | 238 | 10 | 0 | 514 | 751 | 142832367 | 142832130 | 1.110000e-102 | 385.0 |
30 | TraesCS2D01G009600 | chr1B | 83.051 | 177 | 27 | 3 | 1 | 176 | 595494120 | 595493946 | 2.650000e-34 | 158.0 |
31 | TraesCS2D01G009600 | chr1D | 94.958 | 238 | 12 | 0 | 514 | 751 | 375796208 | 375796445 | 2.410000e-99 | 374.0 |
32 | TraesCS2D01G009600 | chr1D | 83.979 | 387 | 45 | 3 | 4193 | 4576 | 480316695 | 480316323 | 8.740000e-94 | 355.0 |
33 | TraesCS2D01G009600 | chr1D | 80.808 | 99 | 11 | 7 | 6991 | 7084 | 62146182 | 62146087 | 3.550000e-08 | 71.3 |
34 | TraesCS2D01G009600 | chr5D | 94.239 | 243 | 14 | 0 | 514 | 756 | 2601513 | 2601271 | 8.680000e-99 | 372.0 |
35 | TraesCS2D01G009600 | chr7D | 94.515 | 237 | 13 | 0 | 514 | 750 | 511622597 | 511622361 | 4.040000e-97 | 366.0 |
36 | TraesCS2D01G009600 | chr5B | 94.515 | 237 | 13 | 0 | 514 | 750 | 702399173 | 702399409 | 4.040000e-97 | 366.0 |
37 | TraesCS2D01G009600 | chr5B | 92.095 | 253 | 18 | 1 | 514 | 764 | 491300792 | 491300540 | 8.740000e-94 | 355.0 |
38 | TraesCS2D01G009600 | chr5B | 83.862 | 347 | 35 | 18 | 167 | 512 | 290582781 | 290583107 | 1.920000e-80 | 311.0 |
39 | TraesCS2D01G009600 | chr5B | 82.609 | 184 | 28 | 4 | 4 | 186 | 352314510 | 352314330 | 7.360000e-35 | 159.0 |
40 | TraesCS2D01G009600 | chr7B | 85.014 | 347 | 30 | 19 | 167 | 512 | 40957365 | 40957690 | 4.100000e-87 | 333.0 |
41 | TraesCS2D01G009600 | chr7B | 83.430 | 344 | 36 | 18 | 167 | 509 | 558923179 | 558923502 | 4.150000e-77 | 300.0 |
42 | TraesCS2D01G009600 | chr7B | 82.486 | 177 | 28 | 3 | 1 | 176 | 699541087 | 699540913 | 1.230000e-32 | 152.0 |
43 | TraesCS2D01G009600 | chr7B | 74.550 | 389 | 53 | 27 | 6564 | 6921 | 19536723 | 19537096 | 2.070000e-25 | 128.0 |
44 | TraesCS2D01G009600 | chr3B | 84.104 | 346 | 33 | 19 | 167 | 511 | 644001728 | 644001404 | 1.480000e-81 | 315.0 |
45 | TraesCS2D01G009600 | chr3B | 82.486 | 177 | 28 | 3 | 1 | 176 | 147678303 | 147678477 | 1.230000e-32 | 152.0 |
46 | TraesCS2D01G009600 | chr3B | 74.486 | 243 | 37 | 13 | 6690 | 6910 | 658426740 | 658426979 | 1.640000e-11 | 82.4 |
47 | TraesCS2D01G009600 | chr4A | 91.262 | 206 | 11 | 5 | 186 | 385 | 359183586 | 359183790 | 2.520000e-69 | 274.0 |
48 | TraesCS2D01G009600 | chr3D | 78.049 | 328 | 51 | 17 | 6598 | 6908 | 134828881 | 134829204 | 3.370000e-43 | 187.0 |
49 | TraesCS2D01G009600 | chr3D | 94.595 | 37 | 2 | 0 | 7048 | 7084 | 74330996 | 74330960 | 2.760000e-04 | 58.4 |
50 | TraesCS2D01G009600 | chr4D | 91.743 | 109 | 9 | 0 | 3569 | 3677 | 158362573 | 158362465 | 1.230000e-32 | 152.0 |
51 | TraesCS2D01G009600 | chr6D | 82.828 | 99 | 12 | 4 | 6788 | 6884 | 276128394 | 276128299 | 4.550000e-12 | 84.2 |
52 | TraesCS2D01G009600 | chrUn | 86.765 | 68 | 8 | 1 | 6788 | 6854 | 354652576 | 354652643 | 2.740000e-09 | 75.0 |
These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.
query | scaffold | start | end | length | rev.comp | avg.bitscore | max.bitscore | avg.percent.identical | query.start | query.end | num_hsp | groupid | homo_length | |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
0 | TraesCS2D01G009600 | chr2D | 5157690 | 5164773 | 7083 | False | 13082.0 | 13082 | 100.0000 | 1 | 7084 | 1 | chr2D.!!$F1 | 7083 |
1 | TraesCS2D01G009600 | chr2D | 47656530 | 47657272 | 742 | True | 1162.0 | 1162 | 94.8000 | 1 | 750 | 1 | chr2D.!!$R1 | 749 |
2 | TraesCS2D01G009600 | chr2B | 6310645 | 6316390 | 5745 | True | 1691.8 | 5535 | 92.5030 | 868 | 6499 | 5 | chr2B.!!$R2 | 5631 |
3 | TraesCS2D01G009600 | chr2A | 3442225 | 3448469 | 6244 | False | 1682.2 | 5156 | 91.0644 | 822 | 7084 | 5 | chr2A.!!$F2 | 6262 |
4 | TraesCS2D01G009600 | chr5A | 612874165 | 612874907 | 742 | True | 1173.0 | 1173 | 95.0670 | 1 | 750 | 1 | chr5A.!!$R3 | 749 |
5 | TraesCS2D01G009600 | chr5A | 470148348 | 470149086 | 738 | True | 1153.0 | 1153 | 94.6670 | 1 | 750 | 1 | chr5A.!!$R2 | 749 |
6 | TraesCS2D01G009600 | chr6A | 364213849 | 364214359 | 510 | True | 712.0 | 712 | 91.8920 | 1 | 512 | 1 | chr6A.!!$R1 | 511 |
AutoCloner calculated primer pairsThese primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible. |
---|
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability | Orientation |
---|---|---|---|---|---|---|---|---|---|---|
864 | 871 | 0.178938 | TTTCCAGCATTGGCCCTTCA | 60.179 | 50.0 | 0.0 | 0.0 | 44.63 | 3.02 | F |
1355 | 1372 | 0.179145 | CCTGCGTGTAGTTACTCCGG | 60.179 | 60.0 | 0.0 | 0.0 | 0.00 | 5.14 | F |
1390 | 1407 | 0.368907 | CGGTCGTGCTTTATCGGTTG | 59.631 | 55.0 | 0.0 | 0.0 | 0.00 | 3.77 | F |
1623 | 1692 | 0.600057 | GAAAGAAGCAAGCCTGTGGG | 59.400 | 55.0 | 0.0 | 0.0 | 0.00 | 4.61 | F |
2043 | 2124 | 0.827368 | CAGCCTCTGAACTACCCCTC | 59.173 | 60.0 | 0.0 | 0.0 | 32.44 | 4.30 | F |
3390 | 3509 | 0.684479 | GGGGAGAACCTTTGGATGGC | 60.684 | 60.0 | 0.0 | 0.0 | 40.03 | 4.40 | F |
4970 | 5107 | 1.241165 | TTGCATGTCTTCTGCTGTGG | 58.759 | 50.0 | 0.0 | 0.0 | 40.34 | 4.17 | F |
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability | Orientation |
---|---|---|---|---|---|---|---|---|---|---|
2046 | 2127 | 0.178998 | GATGGGAGATGCAGGCATGT | 60.179 | 55.000 | 12.12 | 7.66 | 36.70 | 3.21 | R |
2703 | 2820 | 0.392706 | TCGTGCACTCTGTGTCCATT | 59.607 | 50.000 | 16.19 | 0.00 | 35.75 | 3.16 | R |
3086 | 3204 | 2.224606 | CGCCCTATGTTGCATCAGAAT | 58.775 | 47.619 | 3.50 | 0.00 | 0.00 | 2.40 | R |
3390 | 3509 | 1.597854 | TGCCCTTGCAACAGAGTCG | 60.598 | 57.895 | 0.00 | 0.00 | 46.66 | 4.18 | R |
3703 | 3825 | 1.073284 | GGTCAAGGGAGCAAGGTACAA | 59.927 | 52.381 | 0.00 | 0.00 | 41.19 | 2.41 | R |
5097 | 5240 | 1.131126 | CCATTTGGCAGCTACGAACAG | 59.869 | 52.381 | 0.00 | 0.00 | 0.00 | 3.16 | R |
6876 | 7181 | 0.244450 | CATGGTTCCATGTGCACCAC | 59.756 | 55.000 | 20.05 | 3.13 | 43.44 | 4.16 | R |
All possible primersListed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives. |
---|
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability |
---|---|---|---|---|---|---|---|---|---|
50 | 51 | 4.357918 | AGAGCAACTACCAACAAGTGAT | 57.642 | 40.909 | 0.00 | 0.00 | 0.00 | 3.06 |
55 | 56 | 7.448469 | AGAGCAACTACCAACAAGTGATTTTAT | 59.552 | 33.333 | 0.00 | 0.00 | 0.00 | 1.40 |
134 | 135 | 4.127171 | TGCCACTCACTCTGACTAAAAAC | 58.873 | 43.478 | 0.00 | 0.00 | 0.00 | 2.43 |
143 | 144 | 4.586001 | ACTCTGACTAAAAACGGTCACCTA | 59.414 | 41.667 | 0.00 | 0.00 | 0.00 | 3.08 |
147 | 148 | 4.341806 | TGACTAAAAACGGTCACCTACTCA | 59.658 | 41.667 | 0.00 | 0.00 | 0.00 | 3.41 |
178 | 179 | 6.540189 | AGCAACTGACCAATGAAGTATATGTC | 59.460 | 38.462 | 0.00 | 0.00 | 0.00 | 3.06 |
181 | 182 | 8.950210 | CAACTGACCAATGAAGTATATGTCTTT | 58.050 | 33.333 | 0.00 | 0.00 | 0.00 | 2.52 |
440 | 447 | 1.707239 | AAGGCGACGTCGTTGCAAAA | 61.707 | 50.000 | 35.48 | 0.00 | 44.12 | 2.44 |
446 | 453 | 0.655733 | ACGTCGTTGCAAAAGGACAG | 59.344 | 50.000 | 20.05 | 15.90 | 37.40 | 3.51 |
512 | 519 | 4.251543 | ACCAGAACAAAATTAAAGGCCG | 57.748 | 40.909 | 0.00 | 0.00 | 0.00 | 6.13 |
619 | 626 | 9.543018 | GTTATCAGTTTACATTACAAGTGAAGC | 57.457 | 33.333 | 0.00 | 0.00 | 36.24 | 3.86 |
648 | 655 | 6.117911 | TCAGTTATTATGCAATTGTGTCCG | 57.882 | 37.500 | 7.40 | 0.00 | 0.00 | 4.79 |
726 | 733 | 3.782889 | AAATATTTCAGAAGCCCGTGC | 57.217 | 42.857 | 0.00 | 0.00 | 37.95 | 5.34 |
750 | 757 | 1.066605 | CGCACGGGCATACTACTAGTT | 59.933 | 52.381 | 11.77 | 0.00 | 41.24 | 2.24 |
751 | 758 | 2.480759 | CGCACGGGCATACTACTAGTTT | 60.481 | 50.000 | 11.77 | 0.00 | 41.24 | 2.66 |
752 | 759 | 3.528532 | GCACGGGCATACTACTAGTTTT | 58.471 | 45.455 | 3.77 | 0.00 | 40.72 | 2.43 |
753 | 760 | 3.937079 | GCACGGGCATACTACTAGTTTTT | 59.063 | 43.478 | 3.77 | 0.00 | 40.72 | 1.94 |
754 | 761 | 5.111293 | GCACGGGCATACTACTAGTTTTTA | 58.889 | 41.667 | 3.77 | 0.00 | 40.72 | 1.52 |
755 | 762 | 5.756833 | GCACGGGCATACTACTAGTTTTTAT | 59.243 | 40.000 | 3.77 | 0.00 | 40.72 | 1.40 |
756 | 763 | 6.259387 | GCACGGGCATACTACTAGTTTTTATT | 59.741 | 38.462 | 3.77 | 0.00 | 40.72 | 1.40 |
757 | 764 | 7.439056 | GCACGGGCATACTACTAGTTTTTATTA | 59.561 | 37.037 | 3.77 | 0.00 | 40.72 | 0.98 |
758 | 765 | 9.485206 | CACGGGCATACTACTAGTTTTTATTAT | 57.515 | 33.333 | 0.00 | 0.00 | 0.00 | 1.28 |
759 | 766 | 9.485206 | ACGGGCATACTACTAGTTTTTATTATG | 57.515 | 33.333 | 0.00 | 0.00 | 0.00 | 1.90 |
760 | 767 | 9.485206 | CGGGCATACTACTAGTTTTTATTATGT | 57.515 | 33.333 | 0.00 | 0.00 | 0.00 | 2.29 |
778 | 785 | 9.788889 | TTATTATGTCTGATTGATTGAGATGCT | 57.211 | 29.630 | 0.00 | 0.00 | 0.00 | 3.79 |
779 | 786 | 8.693120 | ATTATGTCTGATTGATTGAGATGCTT | 57.307 | 30.769 | 0.00 | 0.00 | 0.00 | 3.91 |
780 | 787 | 8.515695 | TTATGTCTGATTGATTGAGATGCTTT | 57.484 | 30.769 | 0.00 | 0.00 | 0.00 | 3.51 |
781 | 788 | 6.190954 | TGTCTGATTGATTGAGATGCTTTG | 57.809 | 37.500 | 0.00 | 0.00 | 0.00 | 2.77 |
782 | 789 | 5.708697 | TGTCTGATTGATTGAGATGCTTTGT | 59.291 | 36.000 | 0.00 | 0.00 | 0.00 | 2.83 |
783 | 790 | 6.880529 | TGTCTGATTGATTGAGATGCTTTGTA | 59.119 | 34.615 | 0.00 | 0.00 | 0.00 | 2.41 |
784 | 791 | 7.555195 | TGTCTGATTGATTGAGATGCTTTGTAT | 59.445 | 33.333 | 0.00 | 0.00 | 0.00 | 2.29 |
785 | 792 | 8.404000 | GTCTGATTGATTGAGATGCTTTGTATT | 58.596 | 33.333 | 0.00 | 0.00 | 0.00 | 1.89 |
786 | 793 | 8.963725 | TCTGATTGATTGAGATGCTTTGTATTT | 58.036 | 29.630 | 0.00 | 0.00 | 0.00 | 1.40 |
787 | 794 | 9.582431 | CTGATTGATTGAGATGCTTTGTATTTT | 57.418 | 29.630 | 0.00 | 0.00 | 0.00 | 1.82 |
788 | 795 | 9.577110 | TGATTGATTGAGATGCTTTGTATTTTC | 57.423 | 29.630 | 0.00 | 0.00 | 0.00 | 2.29 |
789 | 796 | 8.624701 | ATTGATTGAGATGCTTTGTATTTTCG | 57.375 | 30.769 | 0.00 | 0.00 | 0.00 | 3.46 |
790 | 797 | 6.554419 | TGATTGAGATGCTTTGTATTTTCGG | 58.446 | 36.000 | 0.00 | 0.00 | 0.00 | 4.30 |
791 | 798 | 5.957842 | TTGAGATGCTTTGTATTTTCGGT | 57.042 | 34.783 | 0.00 | 0.00 | 0.00 | 4.69 |
792 | 799 | 5.295431 | TGAGATGCTTTGTATTTTCGGTG | 57.705 | 39.130 | 0.00 | 0.00 | 0.00 | 4.94 |
793 | 800 | 5.000591 | TGAGATGCTTTGTATTTTCGGTGA | 58.999 | 37.500 | 0.00 | 0.00 | 0.00 | 4.02 |
794 | 801 | 5.647658 | TGAGATGCTTTGTATTTTCGGTGAT | 59.352 | 36.000 | 0.00 | 0.00 | 0.00 | 3.06 |
795 | 802 | 6.150976 | TGAGATGCTTTGTATTTTCGGTGATT | 59.849 | 34.615 | 0.00 | 0.00 | 0.00 | 2.57 |
796 | 803 | 6.924111 | AGATGCTTTGTATTTTCGGTGATTT | 58.076 | 32.000 | 0.00 | 0.00 | 0.00 | 2.17 |
797 | 804 | 7.378181 | AGATGCTTTGTATTTTCGGTGATTTT | 58.622 | 30.769 | 0.00 | 0.00 | 0.00 | 1.82 |
798 | 805 | 7.872483 | AGATGCTTTGTATTTTCGGTGATTTTT | 59.128 | 29.630 | 0.00 | 0.00 | 0.00 | 1.94 |
823 | 830 | 8.742125 | TTTATAATAGATCTGATCCCTGGTGT | 57.258 | 34.615 | 13.83 | 0.00 | 0.00 | 4.16 |
824 | 831 | 9.837681 | TTTATAATAGATCTGATCCCTGGTGTA | 57.162 | 33.333 | 13.83 | 0.00 | 0.00 | 2.90 |
825 | 832 | 9.837681 | TTATAATAGATCTGATCCCTGGTGTAA | 57.162 | 33.333 | 13.83 | 3.53 | 0.00 | 2.41 |
826 | 833 | 8.742125 | ATAATAGATCTGATCCCTGGTGTAAA | 57.258 | 34.615 | 13.83 | 0.00 | 0.00 | 2.01 |
827 | 834 | 7.451731 | AATAGATCTGATCCCTGGTGTAAAA | 57.548 | 36.000 | 13.83 | 0.00 | 0.00 | 1.52 |
828 | 835 | 5.983333 | AGATCTGATCCCTGGTGTAAAAT | 57.017 | 39.130 | 13.83 | 0.00 | 0.00 | 1.82 |
829 | 836 | 6.332976 | AGATCTGATCCCTGGTGTAAAATT | 57.667 | 37.500 | 13.83 | 0.00 | 0.00 | 1.82 |
830 | 837 | 6.735556 | AGATCTGATCCCTGGTGTAAAATTT | 58.264 | 36.000 | 13.83 | 0.00 | 0.00 | 1.82 |
831 | 838 | 6.604795 | AGATCTGATCCCTGGTGTAAAATTTG | 59.395 | 38.462 | 13.83 | 0.00 | 0.00 | 2.32 |
832 | 839 | 4.462483 | TCTGATCCCTGGTGTAAAATTTGC | 59.538 | 41.667 | 0.00 | 0.00 | 0.00 | 3.68 |
833 | 840 | 4.155709 | TGATCCCTGGTGTAAAATTTGCA | 58.844 | 39.130 | 0.00 | 0.00 | 0.00 | 4.08 |
834 | 841 | 4.021544 | TGATCCCTGGTGTAAAATTTGCAC | 60.022 | 41.667 | 16.74 | 16.74 | 44.22 | 4.57 |
835 | 842 | 3.571590 | TCCCTGGTGTAAAATTTGCACT | 58.428 | 40.909 | 22.33 | 0.00 | 44.35 | 4.40 |
836 | 843 | 3.320541 | TCCCTGGTGTAAAATTTGCACTG | 59.679 | 43.478 | 22.33 | 16.08 | 44.35 | 3.66 |
864 | 871 | 0.178938 | TTTCCAGCATTGGCCCTTCA | 60.179 | 50.000 | 0.00 | 0.00 | 44.63 | 3.02 |
866 | 873 | 2.353610 | CCAGCATTGGCCCTTCACC | 61.354 | 63.158 | 0.00 | 0.00 | 42.56 | 4.02 |
938 | 945 | 1.451387 | ATAAAACCCTCGGCGCAGG | 60.451 | 57.895 | 10.83 | 8.52 | 0.00 | 4.85 |
1285 | 1298 | 2.748251 | CGCGGTAATGCCCCACAA | 60.748 | 61.111 | 0.00 | 0.00 | 0.00 | 3.33 |
1342 | 1359 | 1.586154 | GCTTGTGGTAATGCCTGCGT | 61.586 | 55.000 | 0.00 | 0.00 | 38.35 | 5.24 |
1349 | 1366 | 2.234168 | TGGTAATGCCTGCGTGTAGTTA | 59.766 | 45.455 | 0.00 | 0.00 | 38.35 | 2.24 |
1352 | 1369 | 2.295253 | ATGCCTGCGTGTAGTTACTC | 57.705 | 50.000 | 0.00 | 0.00 | 0.00 | 2.59 |
1353 | 1370 | 0.245539 | TGCCTGCGTGTAGTTACTCC | 59.754 | 55.000 | 0.00 | 0.00 | 0.00 | 3.85 |
1355 | 1372 | 0.179145 | CCTGCGTGTAGTTACTCCGG | 60.179 | 60.000 | 0.00 | 0.00 | 0.00 | 5.14 |
1356 | 1373 | 0.524862 | CTGCGTGTAGTTACTCCGGT | 59.475 | 55.000 | 0.00 | 0.00 | 0.00 | 5.28 |
1360 | 1377 | 2.863704 | GCGTGTAGTTACTCCGGTGTTT | 60.864 | 50.000 | 15.36 | 4.06 | 0.00 | 2.83 |
1363 | 1380 | 4.563061 | GTGTAGTTACTCCGGTGTTTGAT | 58.437 | 43.478 | 15.36 | 1.89 | 0.00 | 2.57 |
1367 | 1384 | 0.687920 | TACTCCGGTGTTTGATGGCA | 59.312 | 50.000 | 15.36 | 0.00 | 0.00 | 4.92 |
1368 | 1385 | 0.889186 | ACTCCGGTGTTTGATGGCAC | 60.889 | 55.000 | 2.61 | 0.00 | 35.07 | 5.01 |
1386 | 1403 | 1.320555 | CACTTCGGTCGTGCTTTATCG | 59.679 | 52.381 | 0.00 | 0.00 | 0.00 | 2.92 |
1390 | 1407 | 0.368907 | CGGTCGTGCTTTATCGGTTG | 59.631 | 55.000 | 0.00 | 0.00 | 0.00 | 3.77 |
1391 | 1408 | 1.435577 | GGTCGTGCTTTATCGGTTGT | 58.564 | 50.000 | 0.00 | 0.00 | 0.00 | 3.32 |
1393 | 1410 | 1.392510 | GTCGTGCTTTATCGGTTGTCC | 59.607 | 52.381 | 0.00 | 0.00 | 0.00 | 4.02 |
1446 | 1510 | 9.178758 | AGGCTAAATAGTTTCTAGAAATTGGTG | 57.821 | 33.333 | 20.41 | 9.38 | 32.36 | 4.17 |
1491 | 1555 | 2.812011 | GTTTTGCCTCGACACTAATGGT | 59.188 | 45.455 | 0.00 | 0.00 | 0.00 | 3.55 |
1503 | 1567 | 7.755591 | TCGACACTAATGGTTAGTAAGTACAG | 58.244 | 38.462 | 2.35 | 0.00 | 44.32 | 2.74 |
1538 | 1606 | 6.856426 | GCAAGAACCACTTACTGAATACAAAC | 59.144 | 38.462 | 0.00 | 0.00 | 37.03 | 2.93 |
1548 | 1616 | 2.333926 | TGAATACAAACGCGAGGACTG | 58.666 | 47.619 | 15.93 | 4.55 | 0.00 | 3.51 |
1592 | 1660 | 3.520290 | ATGCATGCTCTGTTTCATTGG | 57.480 | 42.857 | 20.33 | 0.00 | 0.00 | 3.16 |
1623 | 1692 | 0.600057 | GAAAGAAGCAAGCCTGTGGG | 59.400 | 55.000 | 0.00 | 0.00 | 0.00 | 4.61 |
1649 | 1718 | 7.228308 | GCTATGGATTTCTCTCTAATGCAAGTT | 59.772 | 37.037 | 0.00 | 0.00 | 36.99 | 2.66 |
1653 | 1722 | 4.908601 | TTCTCTCTAATGCAAGTTCCCA | 57.091 | 40.909 | 0.00 | 0.00 | 0.00 | 4.37 |
1657 | 1726 | 5.649395 | TCTCTCTAATGCAAGTTCCCATTTG | 59.351 | 40.000 | 0.00 | 3.40 | 33.93 | 2.32 |
1664 | 1733 | 3.763360 | TGCAAGTTCCCATTTGTGGATAG | 59.237 | 43.478 | 0.00 | 0.00 | 0.00 | 2.08 |
1747 | 1816 | 9.522804 | CTCTTGTTACTATGATCTTTACCACTC | 57.477 | 37.037 | 0.00 | 0.00 | 0.00 | 3.51 |
1772 | 1848 | 2.935201 | GCATGTCCTTGTCAGACTGATC | 59.065 | 50.000 | 8.73 | 3.45 | 35.21 | 2.92 |
1785 | 1861 | 6.073765 | TGTCAGACTGATCGCTTTCTTTAAAC | 60.074 | 38.462 | 8.73 | 0.00 | 0.00 | 2.01 |
1899 | 1975 | 4.620184 | GCGACTTAACACTCGTTATGTTCT | 59.380 | 41.667 | 5.25 | 0.00 | 42.74 | 3.01 |
1950 | 2031 | 3.930848 | GGCCTGCTTTGATTTTCAATGAG | 59.069 | 43.478 | 0.00 | 0.00 | 36.11 | 2.90 |
1976 | 2057 | 3.907221 | TGGGGCTACCTTACTAGTAGTG | 58.093 | 50.000 | 13.29 | 0.00 | 39.54 | 2.74 |
2043 | 2124 | 0.827368 | CAGCCTCTGAACTACCCCTC | 59.173 | 60.000 | 0.00 | 0.00 | 32.44 | 4.30 |
2046 | 2127 | 2.315155 | AGCCTCTGAACTACCCCTCTTA | 59.685 | 50.000 | 0.00 | 0.00 | 0.00 | 2.10 |
2079 | 2160 | 4.645535 | TCTCCCATCACTTTTTGTCTCTG | 58.354 | 43.478 | 0.00 | 0.00 | 0.00 | 3.35 |
2091 | 2191 | 1.039785 | TGTCTCTGCTATGCGCTCCT | 61.040 | 55.000 | 9.73 | 0.00 | 40.11 | 3.69 |
2201 | 2302 | 4.457603 | TGTTGGTCGTCATCTTAATTTGGG | 59.542 | 41.667 | 0.00 | 0.00 | 0.00 | 4.12 |
2204 | 2305 | 5.180271 | TGGTCGTCATCTTAATTTGGGTAC | 58.820 | 41.667 | 0.00 | 0.00 | 0.00 | 3.34 |
2205 | 2306 | 4.269363 | GGTCGTCATCTTAATTTGGGTACG | 59.731 | 45.833 | 0.00 | 0.00 | 0.00 | 3.67 |
2351 | 2452 | 5.807011 | GCTTATTTGGCTCAGGTATTGTTTG | 59.193 | 40.000 | 0.00 | 0.00 | 0.00 | 2.93 |
2352 | 2453 | 6.572314 | GCTTATTTGGCTCAGGTATTGTTTGT | 60.572 | 38.462 | 0.00 | 0.00 | 0.00 | 2.83 |
2405 | 2522 | 7.810282 | CCTGAACCTATAACTCATAACTGATCG | 59.190 | 40.741 | 0.00 | 0.00 | 0.00 | 3.69 |
2495 | 2612 | 2.973694 | TCCGTATGGACTAACTTGCC | 57.026 | 50.000 | 0.00 | 0.00 | 40.17 | 4.52 |
2703 | 2820 | 8.644216 | TCAGGTCTGTCTTTTACACTTGTTATA | 58.356 | 33.333 | 0.00 | 0.00 | 33.45 | 0.98 |
2918 | 3036 | 4.730966 | TCATAGTGGTCCTCTCATACTCC | 58.269 | 47.826 | 0.00 | 0.00 | 0.00 | 3.85 |
3390 | 3509 | 0.684479 | GGGGAGAACCTTTGGATGGC | 60.684 | 60.000 | 0.00 | 0.00 | 40.03 | 4.40 |
3574 | 3696 | 5.655532 | GGGTTAGGTACTCATGACACTAAGA | 59.344 | 44.000 | 0.00 | 0.00 | 41.75 | 2.10 |
3620 | 3742 | 2.629017 | AATGGATTGGAAGTGCCCTT | 57.371 | 45.000 | 0.00 | 0.00 | 34.97 | 3.95 |
3656 | 3778 | 1.905637 | TGCAGAGTTGACCTAGTCGA | 58.094 | 50.000 | 0.00 | 0.00 | 34.95 | 4.20 |
3703 | 3825 | 7.256368 | GGAAGATAATAGATTTCCGGGAGAAGT | 60.256 | 40.741 | 0.00 | 0.00 | 35.40 | 3.01 |
3786 | 3908 | 3.136443 | TGGGAGCTGATATTACTTGTGGG | 59.864 | 47.826 | 0.00 | 0.00 | 0.00 | 4.61 |
3862 | 3984 | 6.742363 | GCTGGTCTGTTCCATCATCATATGTA | 60.742 | 42.308 | 1.90 | 0.00 | 36.84 | 2.29 |
4268 | 4394 | 6.889301 | AAAGGCCTTTAACTGTTAAGGTAC | 57.111 | 37.500 | 29.47 | 11.47 | 0.00 | 3.34 |
4354 | 4484 | 7.819900 | TGATTCTAGGTAAGAACAGCTTTCTTC | 59.180 | 37.037 | 20.13 | 14.21 | 46.90 | 2.87 |
4634 | 4764 | 5.995565 | TGTCAAGGTTAGTATGTACAGCT | 57.004 | 39.130 | 0.33 | 4.86 | 0.00 | 4.24 |
4729 | 4866 | 4.982295 | GTGAACCACATTTTAGCTTGGAAC | 59.018 | 41.667 | 6.87 | 1.56 | 34.08 | 3.62 |
4776 | 4913 | 7.334421 | TGAATTATGCTCCAGTGTTTAGTCTTC | 59.666 | 37.037 | 0.00 | 0.00 | 0.00 | 2.87 |
4886 | 5023 | 4.696877 | TGTTTAATGCTCTCCATGTGTCTG | 59.303 | 41.667 | 0.00 | 0.00 | 33.49 | 3.51 |
4970 | 5107 | 1.241165 | TTGCATGTCTTCTGCTGTGG | 58.759 | 50.000 | 0.00 | 0.00 | 40.34 | 4.17 |
4994 | 5131 | 5.294306 | GCTCAACTGCAGCATATAAACTGTA | 59.706 | 40.000 | 15.27 | 2.66 | 36.82 | 2.74 |
5030 | 5167 | 5.419155 | TGTTCCTCTTCTACGAATGTCTCAT | 59.581 | 40.000 | 0.00 | 0.00 | 0.00 | 2.90 |
5233 | 5418 | 6.622896 | GCAAACTCGGTATTACTTGAATGCTT | 60.623 | 38.462 | 0.00 | 0.00 | 31.26 | 3.91 |
5464 | 5685 | 2.944129 | TGGCAGCCTTGGATATTTACC | 58.056 | 47.619 | 14.15 | 0.00 | 0.00 | 2.85 |
5473 | 5694 | 7.118390 | CAGCCTTGGATATTTACCGAGATAAAG | 59.882 | 40.741 | 0.00 | 0.00 | 40.36 | 1.85 |
5606 | 5829 | 8.072321 | TCAGCTCTGAGAGTATGTAGAAATTT | 57.928 | 34.615 | 11.64 | 0.00 | 34.14 | 1.82 |
5630 | 5853 | 6.171921 | TGGACATTTTCCTTGCCATATTTTG | 58.828 | 36.000 | 0.00 | 0.00 | 46.10 | 2.44 |
5661 | 5885 | 3.687125 | TGTATGGCCCATCGTTTAAACA | 58.313 | 40.909 | 18.07 | 6.11 | 0.00 | 2.83 |
5756 | 5993 | 4.392940 | CCATTTCCTACTAGAATGGCTGG | 58.607 | 47.826 | 7.09 | 5.30 | 42.18 | 4.85 |
6053 | 6296 | 4.043200 | GCGCCCAAGCACAAGTCC | 62.043 | 66.667 | 0.00 | 0.00 | 39.83 | 3.85 |
6083 | 6326 | 2.951745 | CGCGCTGAGAACGGCTAG | 60.952 | 66.667 | 5.56 | 0.00 | 45.30 | 3.42 |
6091 | 6334 | 3.677424 | GCTGAGAACGGCTAGAAGAATGT | 60.677 | 47.826 | 0.00 | 0.00 | 44.22 | 2.71 |
6108 | 6351 | 5.125356 | AGAATGTCGCATGATGGTTATTCA | 58.875 | 37.500 | 0.00 | 0.00 | 0.00 | 2.57 |
6124 | 6367 | 8.310406 | TGGTTATTCAGCAGTTTATATGATCG | 57.690 | 34.615 | 0.00 | 0.00 | 0.00 | 3.69 |
6125 | 6368 | 7.095229 | TGGTTATTCAGCAGTTTATATGATCGC | 60.095 | 37.037 | 0.00 | 0.00 | 0.00 | 4.58 |
6126 | 6369 | 7.118390 | GGTTATTCAGCAGTTTATATGATCGCT | 59.882 | 37.037 | 0.00 | 0.00 | 0.00 | 4.93 |
6127 | 6370 | 6.718454 | ATTCAGCAGTTTATATGATCGCTC | 57.282 | 37.500 | 0.00 | 0.00 | 0.00 | 5.03 |
6128 | 6371 | 4.560128 | TCAGCAGTTTATATGATCGCTCC | 58.440 | 43.478 | 0.00 | 0.00 | 0.00 | 4.70 |
6129 | 6372 | 3.681897 | CAGCAGTTTATATGATCGCTCCC | 59.318 | 47.826 | 0.00 | 0.00 | 0.00 | 4.30 |
6130 | 6373 | 3.324846 | AGCAGTTTATATGATCGCTCCCA | 59.675 | 43.478 | 0.00 | 0.00 | 0.00 | 4.37 |
6131 | 6374 | 4.065088 | GCAGTTTATATGATCGCTCCCAA | 58.935 | 43.478 | 0.00 | 0.00 | 0.00 | 4.12 |
6132 | 6375 | 4.153117 | GCAGTTTATATGATCGCTCCCAAG | 59.847 | 45.833 | 0.00 | 0.00 | 0.00 | 3.61 |
6133 | 6376 | 4.153117 | CAGTTTATATGATCGCTCCCAAGC | 59.847 | 45.833 | 0.00 | 0.00 | 45.56 | 4.01 |
6167 | 6410 | 6.146347 | GCGTCTCTTCTCAGTTAGTTTGAAAT | 59.854 | 38.462 | 0.00 | 0.00 | 0.00 | 2.17 |
6202 | 6445 | 2.804986 | TGTTGCCTGCCTCATAATGA | 57.195 | 45.000 | 0.00 | 0.00 | 0.00 | 2.57 |
6369 | 6618 | 7.986085 | ATGTTATTGGTGCCTCAGTTATATC | 57.014 | 36.000 | 0.00 | 0.00 | 0.00 | 1.63 |
6391 | 6640 | 7.615582 | ATCGCTTAATTTTCTCATCAGTGAA | 57.384 | 32.000 | 0.00 | 0.00 | 33.05 | 3.18 |
6646 | 6951 | 4.019792 | ACATAGTCAACCAATGCTCACA | 57.980 | 40.909 | 0.00 | 0.00 | 0.00 | 3.58 |
6678 | 6983 | 0.109781 | CAAAGAAATGACCGCCGTGG | 60.110 | 55.000 | 0.00 | 0.00 | 46.41 | 4.94 |
6781 | 7086 | 5.116180 | TCTCCATTAAGAATACCACAAGCG | 58.884 | 41.667 | 0.00 | 0.00 | 0.00 | 4.68 |
6795 | 7100 | 3.363970 | CCACAAGCGTCAATACTTCACAC | 60.364 | 47.826 | 0.00 | 0.00 | 0.00 | 3.82 |
6798 | 7103 | 4.083855 | ACAAGCGTCAATACTTCACACATG | 60.084 | 41.667 | 0.00 | 0.00 | 0.00 | 3.21 |
6799 | 7104 | 3.925379 | AGCGTCAATACTTCACACATGA | 58.075 | 40.909 | 0.00 | 0.00 | 0.00 | 3.07 |
6800 | 7105 | 3.928992 | AGCGTCAATACTTCACACATGAG | 59.071 | 43.478 | 0.00 | 0.00 | 35.83 | 2.90 |
6801 | 7106 | 3.679980 | GCGTCAATACTTCACACATGAGT | 59.320 | 43.478 | 0.00 | 0.00 | 35.83 | 3.41 |
6802 | 7107 | 4.862574 | GCGTCAATACTTCACACATGAGTA | 59.137 | 41.667 | 0.00 | 0.00 | 35.83 | 2.59 |
6803 | 7108 | 5.004821 | GCGTCAATACTTCACACATGAGTAG | 59.995 | 44.000 | 0.00 | 0.00 | 35.83 | 2.57 |
6804 | 7109 | 6.322491 | CGTCAATACTTCACACATGAGTAGA | 58.678 | 40.000 | 0.00 | 0.00 | 35.83 | 2.59 |
6805 | 7110 | 6.806739 | CGTCAATACTTCACACATGAGTAGAA | 59.193 | 38.462 | 0.00 | 4.07 | 35.83 | 2.10 |
6807 | 7112 | 8.598924 | GTCAATACTTCACACATGAGTAGAATG | 58.401 | 37.037 | 0.00 | 1.14 | 35.83 | 2.67 |
6808 | 7113 | 7.765819 | TCAATACTTCACACATGAGTAGAATGG | 59.234 | 37.037 | 0.00 | 0.00 | 35.83 | 3.16 |
6810 | 7115 | 5.482908 | ACTTCACACATGAGTAGAATGGTC | 58.517 | 41.667 | 0.00 | 0.00 | 35.83 | 4.02 |
6811 | 7116 | 4.110036 | TCACACATGAGTAGAATGGTCG | 57.890 | 45.455 | 0.00 | 0.00 | 0.00 | 4.79 |
6812 | 7117 | 3.761752 | TCACACATGAGTAGAATGGTCGA | 59.238 | 43.478 | 0.00 | 0.00 | 0.00 | 4.20 |
6814 | 7119 | 3.119101 | ACACATGAGTAGAATGGTCGACC | 60.119 | 47.826 | 28.17 | 28.17 | 30.15 | 4.79 |
6825 | 7130 | 2.754946 | TGGTCGACCAGGTTTGATAC | 57.245 | 50.000 | 33.23 | 3.01 | 42.01 | 2.24 |
6842 | 7147 | 9.733556 | GGTTTGATACCCCAAAATTTTAGAATT | 57.266 | 29.630 | 2.44 | 0.00 | 41.43 | 2.17 |
6985 | 7291 | 4.016962 | ACCCTTGTACCTACCCATACAT | 57.983 | 45.455 | 0.00 | 0.00 | 31.55 | 2.29 |
6986 | 7292 | 5.160511 | ACCCTTGTACCTACCCATACATA | 57.839 | 43.478 | 0.00 | 0.00 | 31.55 | 2.29 |
6987 | 7293 | 4.903649 | ACCCTTGTACCTACCCATACATAC | 59.096 | 45.833 | 0.00 | 0.00 | 31.55 | 2.39 |
7043 | 7349 | 7.640597 | ACCCTTATTTGGTAAGCATTTACTC | 57.359 | 36.000 | 0.00 | 0.00 | 38.78 | 2.59 |
7045 | 7351 | 6.540914 | CCCTTATTTGGTAAGCATTTACTCGA | 59.459 | 38.462 | 0.00 | 0.00 | 38.78 | 4.04 |
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability |
---|---|---|---|---|---|---|---|---|---|
69 | 70 | 6.691388 | GTGAGTCGCATCCCAATTTAATAAAC | 59.309 | 38.462 | 0.00 | 0.00 | 0.00 | 2.01 |
134 | 135 | 3.187700 | GCTAAATGTGAGTAGGTGACCG | 58.812 | 50.000 | 0.00 | 0.00 | 0.00 | 4.79 |
143 | 144 | 4.085357 | TGGTCAGTTGCTAAATGTGAGT | 57.915 | 40.909 | 0.00 | 0.00 | 0.00 | 3.41 |
147 | 148 | 5.536161 | ACTTCATTGGTCAGTTGCTAAATGT | 59.464 | 36.000 | 0.00 | 0.00 | 0.00 | 2.71 |
260 | 261 | 7.507304 | TCTCATTTTGTAAAATCGACGAGTTC | 58.493 | 34.615 | 11.33 | 0.42 | 36.52 | 3.01 |
374 | 381 | 3.390311 | TGTCCATCTCAATCCCTCTCATG | 59.610 | 47.826 | 0.00 | 0.00 | 0.00 | 3.07 |
492 | 499 | 4.234574 | GACGGCCTTTAATTTTGTTCTGG | 58.765 | 43.478 | 0.00 | 0.00 | 0.00 | 3.86 |
573 | 580 | 8.300286 | TGATAACAAAAAGGCAAATTGACGATA | 58.700 | 29.630 | 0.00 | 0.00 | 0.00 | 2.92 |
619 | 626 | 8.239314 | ACACAATTGCATAATAACTGAAGTCTG | 58.761 | 33.333 | 5.05 | 0.00 | 0.00 | 3.51 |
628 | 635 | 4.499040 | GCACGGACACAATTGCATAATAAC | 59.501 | 41.667 | 5.05 | 0.00 | 34.97 | 1.89 |
648 | 655 | 5.907207 | TCACAGGAAGAGACAATATAGCAC | 58.093 | 41.667 | 0.00 | 0.00 | 0.00 | 4.40 |
703 | 710 | 4.618227 | GCACGGGCTTCTGAAATATTTTGT | 60.618 | 41.667 | 0.00 | 0.00 | 36.96 | 2.83 |
726 | 733 | 1.153529 | TAGTATGCCCGTGCGTTGG | 60.154 | 57.895 | 0.00 | 0.00 | 41.78 | 3.77 |
752 | 759 | 9.788889 | AGCATCTCAATCAATCAGACATAATAA | 57.211 | 29.630 | 0.00 | 0.00 | 0.00 | 1.40 |
753 | 760 | 9.788889 | AAGCATCTCAATCAATCAGACATAATA | 57.211 | 29.630 | 0.00 | 0.00 | 0.00 | 0.98 |
754 | 761 | 8.693120 | AAGCATCTCAATCAATCAGACATAAT | 57.307 | 30.769 | 0.00 | 0.00 | 0.00 | 1.28 |
755 | 762 | 8.403236 | CAAAGCATCTCAATCAATCAGACATAA | 58.597 | 33.333 | 0.00 | 0.00 | 0.00 | 1.90 |
756 | 763 | 7.555195 | ACAAAGCATCTCAATCAATCAGACATA | 59.445 | 33.333 | 0.00 | 0.00 | 0.00 | 2.29 |
757 | 764 | 6.377429 | ACAAAGCATCTCAATCAATCAGACAT | 59.623 | 34.615 | 0.00 | 0.00 | 0.00 | 3.06 |
758 | 765 | 5.708697 | ACAAAGCATCTCAATCAATCAGACA | 59.291 | 36.000 | 0.00 | 0.00 | 0.00 | 3.41 |
759 | 766 | 6.192234 | ACAAAGCATCTCAATCAATCAGAC | 57.808 | 37.500 | 0.00 | 0.00 | 0.00 | 3.51 |
760 | 767 | 8.515695 | AATACAAAGCATCTCAATCAATCAGA | 57.484 | 30.769 | 0.00 | 0.00 | 0.00 | 3.27 |
761 | 768 | 9.582431 | AAAATACAAAGCATCTCAATCAATCAG | 57.418 | 29.630 | 0.00 | 0.00 | 0.00 | 2.90 |
762 | 769 | 9.577110 | GAAAATACAAAGCATCTCAATCAATCA | 57.423 | 29.630 | 0.00 | 0.00 | 0.00 | 2.57 |
763 | 770 | 8.740369 | CGAAAATACAAAGCATCTCAATCAATC | 58.260 | 33.333 | 0.00 | 0.00 | 0.00 | 2.67 |
764 | 771 | 7.703621 | CCGAAAATACAAAGCATCTCAATCAAT | 59.296 | 33.333 | 0.00 | 0.00 | 0.00 | 2.57 |
765 | 772 | 7.028962 | CCGAAAATACAAAGCATCTCAATCAA | 58.971 | 34.615 | 0.00 | 0.00 | 0.00 | 2.57 |
766 | 773 | 6.150976 | ACCGAAAATACAAAGCATCTCAATCA | 59.849 | 34.615 | 0.00 | 0.00 | 0.00 | 2.57 |
767 | 774 | 6.470235 | CACCGAAAATACAAAGCATCTCAATC | 59.530 | 38.462 | 0.00 | 0.00 | 0.00 | 2.67 |
768 | 775 | 6.150976 | TCACCGAAAATACAAAGCATCTCAAT | 59.849 | 34.615 | 0.00 | 0.00 | 0.00 | 2.57 |
769 | 776 | 5.471797 | TCACCGAAAATACAAAGCATCTCAA | 59.528 | 36.000 | 0.00 | 0.00 | 0.00 | 3.02 |
770 | 777 | 5.000591 | TCACCGAAAATACAAAGCATCTCA | 58.999 | 37.500 | 0.00 | 0.00 | 0.00 | 3.27 |
771 | 778 | 5.545658 | TCACCGAAAATACAAAGCATCTC | 57.454 | 39.130 | 0.00 | 0.00 | 0.00 | 2.75 |
772 | 779 | 6.515272 | AATCACCGAAAATACAAAGCATCT | 57.485 | 33.333 | 0.00 | 0.00 | 0.00 | 2.90 |
773 | 780 | 7.581011 | AAAATCACCGAAAATACAAAGCATC | 57.419 | 32.000 | 0.00 | 0.00 | 0.00 | 3.91 |
774 | 781 | 7.961325 | AAAAATCACCGAAAATACAAAGCAT | 57.039 | 28.000 | 0.00 | 0.00 | 0.00 | 3.79 |
797 | 804 | 9.170890 | ACACCAGGGATCAGATCTATTATAAAA | 57.829 | 33.333 | 10.36 | 0.00 | 0.00 | 1.52 |
798 | 805 | 8.742125 | ACACCAGGGATCAGATCTATTATAAA | 57.258 | 34.615 | 10.36 | 0.00 | 0.00 | 1.40 |
799 | 806 | 9.837681 | TTACACCAGGGATCAGATCTATTATAA | 57.162 | 33.333 | 10.36 | 0.00 | 0.00 | 0.98 |
800 | 807 | 9.837681 | TTTACACCAGGGATCAGATCTATTATA | 57.162 | 33.333 | 10.36 | 0.00 | 0.00 | 0.98 |
801 | 808 | 8.742125 | TTTACACCAGGGATCAGATCTATTAT | 57.258 | 34.615 | 10.36 | 0.00 | 0.00 | 1.28 |
802 | 809 | 8.561536 | TTTTACACCAGGGATCAGATCTATTA | 57.438 | 34.615 | 10.36 | 0.00 | 0.00 | 0.98 |
803 | 810 | 7.451731 | TTTTACACCAGGGATCAGATCTATT | 57.548 | 36.000 | 10.36 | 0.00 | 0.00 | 1.73 |
804 | 811 | 7.639062 | ATTTTACACCAGGGATCAGATCTAT | 57.361 | 36.000 | 10.36 | 0.00 | 0.00 | 1.98 |
805 | 812 | 7.451731 | AATTTTACACCAGGGATCAGATCTA | 57.548 | 36.000 | 10.36 | 0.00 | 0.00 | 1.98 |
806 | 813 | 5.983333 | ATTTTACACCAGGGATCAGATCT | 57.017 | 39.130 | 10.36 | 0.00 | 0.00 | 2.75 |
807 | 814 | 6.681368 | GCAAATTTTACACCAGGGATCAGATC | 60.681 | 42.308 | 1.18 | 1.18 | 0.00 | 2.75 |
808 | 815 | 5.127682 | GCAAATTTTACACCAGGGATCAGAT | 59.872 | 40.000 | 0.00 | 0.00 | 0.00 | 2.90 |
809 | 816 | 4.462483 | GCAAATTTTACACCAGGGATCAGA | 59.538 | 41.667 | 0.00 | 0.00 | 0.00 | 3.27 |
810 | 817 | 4.220382 | TGCAAATTTTACACCAGGGATCAG | 59.780 | 41.667 | 0.00 | 0.00 | 0.00 | 2.90 |
811 | 818 | 4.021544 | GTGCAAATTTTACACCAGGGATCA | 60.022 | 41.667 | 9.13 | 0.00 | 0.00 | 2.92 |
812 | 819 | 4.220602 | AGTGCAAATTTTACACCAGGGATC | 59.779 | 41.667 | 14.57 | 0.00 | 34.83 | 3.36 |
813 | 820 | 4.021192 | CAGTGCAAATTTTACACCAGGGAT | 60.021 | 41.667 | 14.57 | 0.00 | 34.83 | 3.85 |
814 | 821 | 3.320541 | CAGTGCAAATTTTACACCAGGGA | 59.679 | 43.478 | 14.57 | 0.00 | 34.83 | 4.20 |
815 | 822 | 3.320541 | TCAGTGCAAATTTTACACCAGGG | 59.679 | 43.478 | 14.57 | 5.80 | 34.83 | 4.45 |
816 | 823 | 4.582701 | TCAGTGCAAATTTTACACCAGG | 57.417 | 40.909 | 14.57 | 7.62 | 34.83 | 4.45 |
817 | 824 | 6.900568 | TTTTCAGTGCAAATTTTACACCAG | 57.099 | 33.333 | 14.57 | 9.72 | 34.83 | 4.00 |
842 | 849 | 2.781403 | AGGGCCAATGCTGGAAATAT | 57.219 | 45.000 | 6.18 | 0.00 | 46.92 | 1.28 |
846 | 853 | 0.899717 | GTGAAGGGCCAATGCTGGAA | 60.900 | 55.000 | 6.18 | 0.00 | 46.92 | 3.53 |
864 | 871 | 3.906846 | TGGGATGGCAATTTACAAAAGGT | 59.093 | 39.130 | 0.00 | 0.00 | 0.00 | 3.50 |
866 | 873 | 4.892433 | TGTGGGATGGCAATTTACAAAAG | 58.108 | 39.130 | 0.00 | 0.00 | 0.00 | 2.27 |
946 | 953 | 3.181967 | CTACAGCCTGCGCGTGAC | 61.182 | 66.667 | 8.43 | 0.00 | 41.18 | 3.67 |
1342 | 1359 | 4.561938 | CCATCAAACACCGGAGTAACTACA | 60.562 | 45.833 | 9.46 | 0.00 | 0.00 | 2.74 |
1349 | 1366 | 0.889186 | GTGCCATCAAACACCGGAGT | 60.889 | 55.000 | 9.46 | 2.22 | 0.00 | 3.85 |
1352 | 1369 | 0.240945 | GAAGTGCCATCAAACACCGG | 59.759 | 55.000 | 0.00 | 0.00 | 37.51 | 5.28 |
1353 | 1370 | 0.110238 | CGAAGTGCCATCAAACACCG | 60.110 | 55.000 | 0.00 | 0.00 | 37.51 | 4.94 |
1355 | 1372 | 0.951558 | ACCGAAGTGCCATCAAACAC | 59.048 | 50.000 | 0.00 | 0.00 | 37.05 | 3.32 |
1356 | 1373 | 1.234821 | GACCGAAGTGCCATCAAACA | 58.765 | 50.000 | 0.00 | 0.00 | 0.00 | 2.83 |
1360 | 1377 | 1.374125 | CACGACCGAAGTGCCATCA | 60.374 | 57.895 | 0.00 | 0.00 | 32.52 | 3.07 |
1367 | 1384 | 1.625616 | CGATAAAGCACGACCGAAGT | 58.374 | 50.000 | 0.00 | 0.00 | 0.00 | 3.01 |
1368 | 1385 | 0.921347 | CCGATAAAGCACGACCGAAG | 59.079 | 55.000 | 0.00 | 0.00 | 0.00 | 3.79 |
1386 | 1403 | 5.788055 | ACAAACAAATTTTTCGGACAACC | 57.212 | 34.783 | 0.00 | 0.00 | 0.00 | 3.77 |
1390 | 1407 | 5.006261 | CCTCCAACAAACAAATTTTTCGGAC | 59.994 | 40.000 | 0.00 | 0.00 | 0.00 | 4.79 |
1391 | 1408 | 5.105310 | TCCTCCAACAAACAAATTTTTCGGA | 60.105 | 36.000 | 0.00 | 0.00 | 0.00 | 4.55 |
1393 | 1410 | 6.654793 | TTCCTCCAACAAACAAATTTTTCG | 57.345 | 33.333 | 0.00 | 0.00 | 0.00 | 3.46 |
1402 | 1419 | 2.627699 | GCCTGAATTCCTCCAACAAACA | 59.372 | 45.455 | 2.27 | 0.00 | 0.00 | 2.83 |
1403 | 1420 | 2.893489 | AGCCTGAATTCCTCCAACAAAC | 59.107 | 45.455 | 2.27 | 0.00 | 0.00 | 2.93 |
1405 | 1422 | 2.978156 | AGCCTGAATTCCTCCAACAA | 57.022 | 45.000 | 2.27 | 0.00 | 0.00 | 2.83 |
1446 | 1510 | 0.954452 | CTTGTCAAGGCAGGTTCACC | 59.046 | 55.000 | 4.52 | 0.00 | 0.00 | 4.02 |
1491 | 1555 | 7.046292 | TGCTCACAACTTCTGTACTTACTAA | 57.954 | 36.000 | 0.00 | 0.00 | 36.10 | 2.24 |
1503 | 1567 | 2.945668 | AGTGGTTCTTGCTCACAACTTC | 59.054 | 45.455 | 0.00 | 0.00 | 34.17 | 3.01 |
1538 | 1606 | 1.804151 | TGAAAATTTCCAGTCCTCGCG | 59.196 | 47.619 | 0.00 | 0.00 | 0.00 | 5.87 |
1548 | 1616 | 4.462483 | TCATACAGGCCAGTGAAAATTTCC | 59.538 | 41.667 | 11.70 | 0.00 | 0.00 | 3.13 |
1592 | 1660 | 8.678199 | AGGCTTGCTTCTTTCATAAACTATAAC | 58.322 | 33.333 | 0.00 | 0.00 | 0.00 | 1.89 |
1623 | 1692 | 6.709846 | ACTTGCATTAGAGAGAAATCCATAGC | 59.290 | 38.462 | 0.00 | 0.00 | 0.00 | 2.97 |
1624 | 1693 | 8.674263 | AACTTGCATTAGAGAGAAATCCATAG | 57.326 | 34.615 | 0.00 | 0.00 | 0.00 | 2.23 |
1626 | 1695 | 6.545298 | GGAACTTGCATTAGAGAGAAATCCAT | 59.455 | 38.462 | 0.00 | 0.00 | 0.00 | 3.41 |
1628 | 1697 | 5.298026 | GGGAACTTGCATTAGAGAGAAATCC | 59.702 | 44.000 | 0.00 | 0.00 | 0.00 | 3.01 |
1674 | 1743 | 7.879160 | TCACAAAAGTAACAATTACTCGGGTAT | 59.121 | 33.333 | 0.00 | 0.00 | 45.33 | 2.73 |
1678 | 1747 | 7.749126 | GGAATCACAAAAGTAACAATTACTCGG | 59.251 | 37.037 | 1.85 | 0.00 | 45.33 | 4.63 |
1679 | 1748 | 8.504005 | AGGAATCACAAAAGTAACAATTACTCG | 58.496 | 33.333 | 1.85 | 0.00 | 45.33 | 4.18 |
1747 | 1816 | 2.028294 | AGTCTGACAAGGACATGCTCAG | 60.028 | 50.000 | 10.88 | 0.00 | 36.29 | 3.35 |
1772 | 1848 | 3.840763 | GCGATGAGTGTTTAAAGAAAGCG | 59.159 | 43.478 | 0.00 | 0.00 | 0.00 | 4.68 |
1785 | 1861 | 4.447054 | CCAGCTTATAAAGAGCGATGAGTG | 59.553 | 45.833 | 0.00 | 0.00 | 44.71 | 3.51 |
1861 | 1937 | 7.009357 | GTGTTAAGTCGCTTCCAACTTAGATAG | 59.991 | 40.741 | 0.00 | 0.00 | 38.73 | 2.08 |
1950 | 2031 | 5.369409 | ACTAGTAAGGTAGCCCCAAATTC | 57.631 | 43.478 | 0.00 | 0.00 | 34.66 | 2.17 |
2043 | 2124 | 1.134007 | TGGGAGATGCAGGCATGTAAG | 60.134 | 52.381 | 12.12 | 0.00 | 36.70 | 2.34 |
2046 | 2127 | 0.178998 | GATGGGAGATGCAGGCATGT | 60.179 | 55.000 | 12.12 | 7.66 | 36.70 | 3.21 |
2091 | 2191 | 9.305925 | CTACGAAGCATGCAGATATTTATGATA | 57.694 | 33.333 | 21.98 | 0.00 | 0.00 | 2.15 |
2351 | 2452 | 3.996363 | GACCAAATCAAGAATGGCCAAAC | 59.004 | 43.478 | 10.96 | 7.02 | 37.77 | 2.93 |
2352 | 2453 | 3.903090 | AGACCAAATCAAGAATGGCCAAA | 59.097 | 39.130 | 10.96 | 0.00 | 37.77 | 3.28 |
2405 | 2522 | 3.729217 | GGTTTCTGCGAAAGTAACAAAGC | 59.271 | 43.478 | 9.24 | 0.00 | 37.78 | 3.51 |
2495 | 2612 | 5.666969 | TCTTTGTGTGTACCAGAAAATCG | 57.333 | 39.130 | 7.65 | 0.00 | 36.05 | 3.34 |
2703 | 2820 | 0.392706 | TCGTGCACTCTGTGTCCATT | 59.607 | 50.000 | 16.19 | 0.00 | 35.75 | 3.16 |
2861 | 2979 | 5.500234 | AGATGCAGTAAAATCACTAGGCAA | 58.500 | 37.500 | 0.00 | 0.00 | 32.97 | 4.52 |
3086 | 3204 | 2.224606 | CGCCCTATGTTGCATCAGAAT | 58.775 | 47.619 | 3.50 | 0.00 | 0.00 | 2.40 |
3390 | 3509 | 1.597854 | TGCCCTTGCAACAGAGTCG | 60.598 | 57.895 | 0.00 | 0.00 | 46.66 | 4.18 |
3447 | 3569 | 4.388577 | AACAAAATTACCAGCTCCTCCT | 57.611 | 40.909 | 0.00 | 0.00 | 0.00 | 3.69 |
3448 | 3570 | 4.767409 | AGAAACAAAATTACCAGCTCCTCC | 59.233 | 41.667 | 0.00 | 0.00 | 0.00 | 4.30 |
3449 | 3571 | 5.335976 | CCAGAAACAAAATTACCAGCTCCTC | 60.336 | 44.000 | 0.00 | 0.00 | 0.00 | 3.71 |
3574 | 3696 | 2.160721 | TTAGGATCTTCAGGCTCCGT | 57.839 | 50.000 | 0.00 | 0.00 | 34.13 | 4.69 |
3620 | 3742 | 5.372343 | TCTGCAAGAGCTTGGGATATTTA | 57.628 | 39.130 | 11.78 | 0.00 | 38.67 | 1.40 |
3656 | 3778 | 5.127491 | TCCTTTCACGTAAATGAGGTGTTT | 58.873 | 37.500 | 0.00 | 0.00 | 43.16 | 2.83 |
3693 | 3815 | 1.944430 | GCAAGGTACAACTTCTCCCGG | 60.944 | 57.143 | 0.00 | 0.00 | 0.00 | 5.73 |
3703 | 3825 | 1.073284 | GGTCAAGGGAGCAAGGTACAA | 59.927 | 52.381 | 0.00 | 0.00 | 41.19 | 2.41 |
3786 | 3908 | 3.591196 | TTTGTGCACATAGCCATTTCC | 57.409 | 42.857 | 22.39 | 0.00 | 44.83 | 3.13 |
3862 | 3984 | 5.806654 | AAGACACAAAAAGGGCATATGTT | 57.193 | 34.783 | 4.29 | 0.00 | 0.00 | 2.71 |
4290 | 4416 | 4.635765 | GGTGAGCACAACAATTCTGCTATA | 59.364 | 41.667 | 2.75 | 0.00 | 41.40 | 1.31 |
4291 | 4417 | 3.441572 | GGTGAGCACAACAATTCTGCTAT | 59.558 | 43.478 | 2.75 | 0.00 | 41.40 | 2.97 |
4354 | 4484 | 3.423154 | GCACGGTTCCTGCCTTCG | 61.423 | 66.667 | 0.00 | 0.00 | 0.00 | 3.79 |
4682 | 4818 | 6.211184 | ACAATCATGCTTTCCCAAAATACTCA | 59.789 | 34.615 | 0.00 | 0.00 | 0.00 | 3.41 |
4729 | 4866 | 6.018589 | TCACTGATCTAGAACTGAACACAG | 57.981 | 41.667 | 12.82 | 0.00 | 37.63 | 3.66 |
4776 | 4913 | 8.997960 | CATTGAAATTTTGGTCGAAAGTTTTTG | 58.002 | 29.630 | 3.06 | 0.18 | 34.56 | 2.44 |
4806 | 4943 | 8.159447 | TGAATAGCACTTATTCTTATGGCAGAT | 58.841 | 33.333 | 0.00 | 0.00 | 45.24 | 2.90 |
4886 | 5023 | 7.145323 | AGTACCATTCACACAAAATACAAAGC | 58.855 | 34.615 | 0.00 | 0.00 | 0.00 | 3.51 |
4949 | 5086 | 2.034939 | CCACAGCAGAAGACATGCAAAA | 59.965 | 45.455 | 0.00 | 0.00 | 46.31 | 2.44 |
4970 | 5107 | 4.095483 | ACAGTTTATATGCTGCAGTTGAGC | 59.905 | 41.667 | 16.64 | 1.04 | 36.26 | 4.26 |
4994 | 5131 | 8.076178 | CGTAGAAGAGGAACAAATGTGAAAATT | 58.924 | 33.333 | 0.00 | 0.00 | 0.00 | 1.82 |
5019 | 5156 | 6.520272 | AGAAGAGGGATAAATGAGACATTCG | 58.480 | 40.000 | 0.00 | 0.00 | 0.00 | 3.34 |
5082 | 5225 | 3.244770 | ACGAACAGGGACCAAATGTACAT | 60.245 | 43.478 | 1.41 | 1.41 | 0.00 | 2.29 |
5085 | 5228 | 3.618019 | GCTACGAACAGGGACCAAATGTA | 60.618 | 47.826 | 0.00 | 0.00 | 0.00 | 2.29 |
5086 | 5229 | 2.874457 | GCTACGAACAGGGACCAAATGT | 60.874 | 50.000 | 0.00 | 0.00 | 0.00 | 2.71 |
5097 | 5240 | 1.131126 | CCATTTGGCAGCTACGAACAG | 59.869 | 52.381 | 0.00 | 0.00 | 0.00 | 3.16 |
5284 | 5469 | 8.738106 | CATCTCATCTAGTACAGATATGCAGAA | 58.262 | 37.037 | 0.00 | 0.00 | 42.40 | 3.02 |
5464 | 5685 | 4.631813 | CAGTCCCTTTGTTCCTTTATCTCG | 59.368 | 45.833 | 0.00 | 0.00 | 0.00 | 4.04 |
5473 | 5694 | 3.202151 | TGATATCCCAGTCCCTTTGTTCC | 59.798 | 47.826 | 0.00 | 0.00 | 0.00 | 3.62 |
5527 | 5748 | 2.848691 | TCCAAACCGAACCGTGTAAAT | 58.151 | 42.857 | 0.00 | 0.00 | 0.00 | 1.40 |
5533 | 5754 | 0.107557 | AGTGTTCCAAACCGAACCGT | 60.108 | 50.000 | 0.00 | 0.00 | 41.24 | 4.83 |
5536 | 5757 | 0.666374 | CCCAGTGTTCCAAACCGAAC | 59.334 | 55.000 | 0.00 | 0.00 | 42.10 | 3.95 |
5580 | 5801 | 7.838079 | ATTTCTACATACTCTCAGAGCTGAT | 57.162 | 36.000 | 11.00 | 0.00 | 39.13 | 2.90 |
5606 | 5829 | 8.008187 | GTCAAAATATGGCAAGGAAAATGTCCA | 61.008 | 37.037 | 0.00 | 0.00 | 40.53 | 4.02 |
5630 | 5853 | 0.107165 | GGGCCATACAACTCCCTGTC | 60.107 | 60.000 | 4.39 | 0.00 | 35.87 | 3.51 |
6053 | 6296 | 3.530104 | GCGCGGTCGTACGAGTTG | 61.530 | 66.667 | 20.18 | 12.34 | 38.14 | 3.16 |
6083 | 6326 | 5.679734 | ATAACCATCATGCGACATTCTTC | 57.320 | 39.130 | 0.00 | 0.00 | 0.00 | 2.87 |
6091 | 6334 | 2.874086 | CTGCTGAATAACCATCATGCGA | 59.126 | 45.455 | 0.00 | 0.00 | 0.00 | 5.10 |
6108 | 6351 | 3.324846 | TGGGAGCGATCATATAAACTGCT | 59.675 | 43.478 | 1.84 | 0.00 | 0.00 | 4.24 |
6125 | 6368 | 1.220169 | CGCGATCTGATGCTTGGGAG | 61.220 | 60.000 | 0.00 | 0.00 | 0.00 | 4.30 |
6126 | 6369 | 1.227350 | CGCGATCTGATGCTTGGGA | 60.227 | 57.895 | 0.00 | 0.00 | 0.00 | 4.37 |
6127 | 6370 | 1.493950 | GACGCGATCTGATGCTTGGG | 61.494 | 60.000 | 15.93 | 0.00 | 0.00 | 4.12 |
6128 | 6371 | 0.529337 | AGACGCGATCTGATGCTTGG | 60.529 | 55.000 | 15.93 | 0.00 | 35.81 | 3.61 |
6129 | 6372 | 0.851495 | GAGACGCGATCTGATGCTTG | 59.149 | 55.000 | 15.93 | 0.00 | 38.00 | 4.01 |
6130 | 6373 | 0.743688 | AGAGACGCGATCTGATGCTT | 59.256 | 50.000 | 15.93 | 0.00 | 38.00 | 3.91 |
6131 | 6374 | 0.743688 | AAGAGACGCGATCTGATGCT | 59.256 | 50.000 | 15.93 | 2.58 | 38.00 | 3.79 |
6132 | 6375 | 1.127701 | GAAGAGACGCGATCTGATGC | 58.872 | 55.000 | 15.93 | 0.12 | 38.00 | 3.91 |
6133 | 6376 | 2.032675 | TGAGAAGAGACGCGATCTGATG | 59.967 | 50.000 | 15.93 | 0.00 | 38.00 | 3.07 |
6136 | 6379 | 1.400142 | ACTGAGAAGAGACGCGATCTG | 59.600 | 52.381 | 15.93 | 6.01 | 38.00 | 2.90 |
6202 | 6445 | 9.394767 | TGATGTTGCACAATACTACTGAATAAT | 57.605 | 29.630 | 0.00 | 0.00 | 0.00 | 1.28 |
6215 | 6460 | 3.194755 | ACAGCATCATGATGTTGCACAAT | 59.805 | 39.130 | 37.57 | 23.07 | 45.71 | 2.71 |
6217 | 6462 | 2.164338 | ACAGCATCATGATGTTGCACA | 58.836 | 42.857 | 37.57 | 0.00 | 45.71 | 4.57 |
6250 | 6499 | 4.326504 | AAAGCAACCACCATTCAGAAAG | 57.673 | 40.909 | 0.00 | 0.00 | 0.00 | 2.62 |
6346 | 6595 | 5.989168 | CGATATAACTGAGGCACCAATAACA | 59.011 | 40.000 | 0.00 | 0.00 | 0.00 | 2.41 |
6357 | 6606 | 9.261180 | TGAGAAAATTAAGCGATATAACTGAGG | 57.739 | 33.333 | 0.00 | 0.00 | 0.00 | 3.86 |
6369 | 6618 | 8.679288 | ATTTTCACTGATGAGAAAATTAAGCG | 57.321 | 30.769 | 7.17 | 0.00 | 44.80 | 4.68 |
6391 | 6640 | 5.679601 | GTTTGAGAGAGAGAGGCCATATTT | 58.320 | 41.667 | 5.01 | 0.00 | 0.00 | 1.40 |
6640 | 6943 | 6.902341 | TCTTTGTGAAACTTCATATGTGAGC | 58.098 | 36.000 | 1.90 | 0.00 | 39.73 | 4.26 |
6646 | 6951 | 8.023128 | CGGTCATTTCTTTGTGAAACTTCATAT | 58.977 | 33.333 | 0.00 | 0.00 | 46.08 | 1.78 |
6671 | 6976 | 2.519377 | TTATCCAGAATACCACGGCG | 57.481 | 50.000 | 4.80 | 4.80 | 0.00 | 6.46 |
6761 | 7066 | 4.634004 | TGACGCTTGTGGTATTCTTAATGG | 59.366 | 41.667 | 0.00 | 0.00 | 0.00 | 3.16 |
6764 | 7069 | 7.101054 | AGTATTGACGCTTGTGGTATTCTTAA | 58.899 | 34.615 | 0.00 | 0.00 | 0.00 | 1.85 |
6778 | 7083 | 3.925379 | TCATGTGTGAAGTATTGACGCT | 58.075 | 40.909 | 0.00 | 0.00 | 43.22 | 5.07 |
6781 | 7086 | 8.598924 | CATTCTACTCATGTGTGAAGTATTGAC | 58.401 | 37.037 | 10.62 | 0.00 | 33.05 | 3.18 |
6795 | 7100 | 3.491619 | CCTGGTCGACCATTCTACTCATG | 60.492 | 52.174 | 36.21 | 20.07 | 46.46 | 3.07 |
6798 | 7103 | 2.100989 | ACCTGGTCGACCATTCTACTC | 58.899 | 52.381 | 36.21 | 6.73 | 46.46 | 2.59 |
6799 | 7104 | 2.233305 | ACCTGGTCGACCATTCTACT | 57.767 | 50.000 | 36.21 | 12.98 | 46.46 | 2.57 |
6800 | 7105 | 3.000727 | CAAACCTGGTCGACCATTCTAC | 58.999 | 50.000 | 36.21 | 8.29 | 46.46 | 2.59 |
6801 | 7106 | 2.901192 | TCAAACCTGGTCGACCATTCTA | 59.099 | 45.455 | 36.21 | 17.15 | 46.46 | 2.10 |
6802 | 7107 | 1.697432 | TCAAACCTGGTCGACCATTCT | 59.303 | 47.619 | 36.21 | 20.37 | 46.46 | 2.40 |
6803 | 7108 | 2.178912 | TCAAACCTGGTCGACCATTC | 57.821 | 50.000 | 36.21 | 10.27 | 46.46 | 2.67 |
6804 | 7109 | 2.879103 | ATCAAACCTGGTCGACCATT | 57.121 | 45.000 | 36.21 | 25.66 | 46.46 | 3.16 |
6805 | 7110 | 2.093128 | GGTATCAAACCTGGTCGACCAT | 60.093 | 50.000 | 36.21 | 21.18 | 46.46 | 3.55 |
6807 | 7112 | 2.019948 | GGTATCAAACCTGGTCGACC | 57.980 | 55.000 | 28.17 | 28.17 | 45.75 | 4.79 |
6876 | 7181 | 0.244450 | CATGGTTCCATGTGCACCAC | 59.756 | 55.000 | 20.05 | 3.13 | 43.44 | 4.16 |
6877 | 7182 | 2.656049 | CATGGTTCCATGTGCACCA | 58.344 | 52.632 | 20.05 | 2.97 | 44.75 | 4.17 |
6956 | 7262 | 4.141846 | GGGTAGGTACAAGGGTTTACTAGC | 60.142 | 50.000 | 0.00 | 0.00 | 0.00 | 3.42 |
7030 | 7336 | 8.662141 | TCTTTGGTAAATCGAGTAAATGCTTAC | 58.338 | 33.333 | 0.00 | 0.00 | 38.16 | 2.34 |

Based at the University of Bristol with support from BBSRC.
AutoCloner maintained by Alex Coulton.