Multiple sequence alignment - TraesCS2D01G009100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2D01G009100 chr2D 100.000 4655 0 0 1 4655 5090316 5085662 0.000000e+00 8597.0
1 TraesCS2D01G009100 chr2D 90.833 600 16 7 1 573 242909441 242908854 0.000000e+00 767.0
2 TraesCS2D01G009100 chr2D 79.491 746 140 7 2752 3486 5098714 5097971 6.900000e-143 518.0
3 TraesCS2D01G009100 chr2D 78.288 479 83 12 1539 2005 5099977 5099508 5.890000e-74 289.0
4 TraesCS2D01G009100 chr2A 91.967 1718 117 8 2126 3830 3100433 3102142 0.000000e+00 2388.0
5 TraesCS2D01G009100 chr2A 89.969 638 44 9 3133 3757 3305895 3305265 0.000000e+00 806.0
6 TraesCS2D01G009100 chr2A 79.367 979 174 18 1724 2685 3335233 3334266 0.000000e+00 664.0
7 TraesCS2D01G009100 chr2A 81.477 853 76 33 592 1409 3099049 3099854 3.950000e-175 625.0
8 TraesCS2D01G009100 chr2A 88.109 513 39 13 1433 1938 3099852 3100349 1.440000e-164 590.0
9 TraesCS2D01G009100 chr2A 88.109 513 39 13 1433 1938 3322439 3321942 1.440000e-164 590.0
10 TraesCS2D01G009100 chr2A 80.952 777 71 31 665 1409 3323168 3322437 1.140000e-150 544.0
11 TraesCS2D01G009100 chr2A 89.706 272 10 7 4375 4638 3102611 3102872 9.650000e-87 331.0
12 TraesCS2D01G009100 chr2A 90.710 183 12 2 4208 4385 3102380 3102562 6.020000e-59 239.0
13 TraesCS2D01G009100 chr2A 92.308 156 10 2 4058 4212 3102147 3102301 2.180000e-53 220.0
14 TraesCS2D01G009100 chr2B 81.570 2089 320 41 1562 3624 6337284 6339333 0.000000e+00 1664.0
15 TraesCS2D01G009100 chr2B 87.414 437 37 9 152 586 245732564 245732144 1.950000e-133 486.0
16 TraesCS2D01G009100 chr2B 93.000 200 12 1 574 773 6335820 6336017 1.640000e-74 291.0
17 TraesCS2D01G009100 chr2B 88.739 222 16 5 631 845 6336575 6336794 3.570000e-66 263.0
18 TraesCS2D01G009100 chr2B 92.029 138 11 0 70 207 245732682 245732545 1.320000e-45 195.0
19 TraesCS2D01G009100 chr2B 90.714 140 13 0 70 209 485327057 485327196 2.210000e-43 187.0
20 TraesCS2D01G009100 chr2B 85.161 155 11 12 813 966 6336014 6336157 1.040000e-31 148.0
21 TraesCS2D01G009100 chr2B 97.778 45 1 0 1 45 485326922 485326966 1.390000e-10 78.7
22 TraesCS2D01G009100 chrUn 92.246 1122 83 3 2017 3137 249550882 249552000 0.000000e+00 1587.0
23 TraesCS2D01G009100 chrUn 89.310 580 39 14 1433 2005 249550339 249550902 0.000000e+00 706.0
24 TraesCS2D01G009100 chrUn 79.770 608 59 27 822 1409 249549778 249550341 2.630000e-102 383.0
25 TraesCS2D01G009100 chrUn 78.512 121 24 2 4393 4512 334868879 334868998 1.390000e-10 78.7
26 TraesCS2D01G009100 chr1D 92.140 598 13 7 1 573 298454998 298455586 0.000000e+00 813.0
27 TraesCS2D01G009100 chr1D 81.081 111 19 2 4401 4510 456060337 456060446 2.310000e-13 87.9
28 TraesCS2D01G009100 chr1D 84.146 82 11 2 4401 4481 456034930 456034850 1.390000e-10 78.7
29 TraesCS2D01G009100 chr1D 82.500 80 7 5 1373 1450 66562489 66562563 3.890000e-06 63.9
30 TraesCS2D01G009100 chr3A 94.787 422 18 2 152 573 194791534 194791117 0.000000e+00 654.0
31 TraesCS2D01G009100 chr3A 94.118 204 12 0 1 204 194791721 194791518 1.260000e-80 311.0
32 TraesCS2D01G009100 chr3A 87.692 65 8 0 3921 3985 53568798 53568862 4.990000e-10 76.8
33 TraesCS2D01G009100 chr7D 94.313 422 14 2 152 573 535785594 535786005 5.080000e-179 638.0
34 TraesCS2D01G009100 chr7D 97.414 232 6 0 3829 4060 561529364 561529133 3.380000e-106 396.0
35 TraesCS2D01G009100 chr7D 93.532 201 13 0 1 201 535785407 535785607 2.720000e-77 300.0
36 TraesCS2D01G009100 chr4A 91.106 416 28 6 162 576 718623475 718623068 5.260000e-154 555.0
37 TraesCS2D01G009100 chr4A 91.304 230 19 1 3829 4057 323886893 323887122 3.500000e-81 313.0
38 TraesCS2D01G009100 chr4A 90.050 201 20 0 1 201 718623690 718623490 1.280000e-65 261.0
39 TraesCS2D01G009100 chr4D 97.380 229 6 0 3829 4057 46173874 46174102 1.570000e-104 390.0
40 TraesCS2D01G009100 chr3D 96.983 232 7 0 3829 4060 184381450 184381219 1.570000e-104 390.0
41 TraesCS2D01G009100 chr3D 82.143 84 7 5 1374 1450 473746065 473745983 1.080000e-06 65.8
42 TraesCS2D01G009100 chr7B 85.801 331 27 11 250 566 62408628 62408304 2.680000e-87 333.0
43 TraesCS2D01G009100 chr7B 90.547 201 18 1 1 201 62452601 62452402 9.930000e-67 265.0
44 TraesCS2D01G009100 chr7B 81.250 80 12 3 1373 1450 149610259 149610337 1.400000e-05 62.1
45 TraesCS2D01G009100 chr6B 89.209 139 8 1 4388 4519 270754030 270753892 2.880000e-37 167.0
46 TraesCS2D01G009100 chr6B 79.359 281 25 14 4391 4645 270812044 270811771 2.880000e-37 167.0
47 TraesCS2D01G009100 chr1B 85.366 82 10 2 4401 4481 626510804 626510884 2.980000e-12 84.2
48 TraesCS2D01G009100 chr1A 86.076 79 9 2 4401 4478 549622163 549622086 2.980000e-12 84.2
49 TraesCS2D01G009100 chr1A 84.146 82 11 2 4401 4481 549589717 549589637 1.390000e-10 78.7
50 TraesCS2D01G009100 chr1A 81.111 90 8 6 1368 1450 568391198 568391285 3.890000e-06 63.9
51 TraesCS2D01G009100 chr5A 100.000 36 0 0 1368 1403 27939629 27939594 3.010000e-07 67.6
52 TraesCS2D01G009100 chr5A 97.297 37 0 1 1372 1408 34911426 34911461 1.400000e-05 62.1
53 TraesCS2D01G009100 chr5D 97.222 36 1 0 1368 1403 173756293 173756258 1.400000e-05 62.1
54 TraesCS2D01G009100 chr6A 94.737 38 1 1 1367 1403 104118413 104118376 1.810000e-04 58.4
55 TraesCS2D01G009100 chr4B 97.143 35 0 1 1369 1403 68119873 68119840 1.810000e-04 58.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2D01G009100 chr2D 5085662 5090316 4654 True 8597.000000 8597 100.000000 1 4655 1 chr2D.!!$R1 4654
1 TraesCS2D01G009100 chr2D 242908854 242909441 587 True 767.000000 767 90.833000 1 573 1 chr2D.!!$R2 572
2 TraesCS2D01G009100 chr2D 5097971 5099977 2006 True 403.500000 518 78.889500 1539 3486 2 chr2D.!!$R3 1947
3 TraesCS2D01G009100 chr2A 3305265 3305895 630 True 806.000000 806 89.969000 3133 3757 1 chr2A.!!$R1 624
4 TraesCS2D01G009100 chr2A 3099049 3102872 3823 False 732.166667 2388 89.046167 592 4638 6 chr2A.!!$F1 4046
5 TraesCS2D01G009100 chr2A 3334266 3335233 967 True 664.000000 664 79.367000 1724 2685 1 chr2A.!!$R2 961
6 TraesCS2D01G009100 chr2A 3321942 3323168 1226 True 567.000000 590 84.530500 665 1938 2 chr2A.!!$R3 1273
7 TraesCS2D01G009100 chr2B 6335820 6339333 3513 False 591.500000 1664 87.117500 574 3624 4 chr2B.!!$F1 3050
8 TraesCS2D01G009100 chr2B 245732144 245732682 538 True 340.500000 486 89.721500 70 586 2 chr2B.!!$R1 516
9 TraesCS2D01G009100 chrUn 249549778 249552000 2222 False 892.000000 1587 87.108667 822 3137 3 chrUn.!!$F2 2315
10 TraesCS2D01G009100 chr1D 298454998 298455586 588 False 813.000000 813 92.140000 1 573 1 chr1D.!!$F2 572
11 TraesCS2D01G009100 chr3A 194791117 194791721 604 True 482.500000 654 94.452500 1 573 2 chr3A.!!$R1 572
12 TraesCS2D01G009100 chr7D 535785407 535786005 598 False 469.000000 638 93.922500 1 573 2 chr7D.!!$F1 572
13 TraesCS2D01G009100 chr4A 718623068 718623690 622 True 408.000000 555 90.578000 1 576 2 chr4A.!!$R1 575

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
782 878 0.112218 CTCCCATCCAACACCAACCA 59.888 55.0 0.0 0.0 0.0 3.67 F
1943 2822 0.178068 CAGACACGTATTGGGGGAGG 59.822 60.0 0.0 0.0 0.0 4.30 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2595 3513 0.109597 GCAAGGTTGTGCAATCCTCG 60.110 55.0 6.14 0.00 44.29 4.63 R
3940 4928 0.033228 AGATCAGCCGTGCTAGCATC 59.967 55.0 22.51 12.36 36.40 3.91 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
56 57 0.591170 AGACACAAAAATCCACGGCG 59.409 50.000 4.80 4.80 0.00 6.46
68 69 1.567537 CACGGCGACAAAACGATGT 59.432 52.632 16.62 0.00 35.90 3.06
227 300 1.683025 TTCCGACCGCCTACCATGA 60.683 57.895 0.00 0.00 0.00 3.07
371 444 4.801330 GTTTCAATTAAACTGGAGGGGG 57.199 45.455 0.00 0.00 43.52 5.40
482 560 2.288666 GCCTAAATGAGTCCGCATCAA 58.711 47.619 0.00 0.00 0.00 2.57
577 665 4.339247 CCCCAGCTGTAATTAACTCAATGG 59.661 45.833 13.81 0.82 0.00 3.16
671 759 1.459455 TTCCCATGTGGTGTTTGGCG 61.459 55.000 0.00 0.00 34.77 5.69
677 765 2.203280 TGGTGTTTGGCGGACAGG 60.203 61.111 0.00 0.00 0.00 4.00
747 843 3.113824 AGAGACATCCCATCTGCTTCTT 58.886 45.455 0.00 0.00 0.00 2.52
779 875 1.076549 GCCTCCCATCCAACACCAA 59.923 57.895 0.00 0.00 0.00 3.67
780 876 1.250840 GCCTCCCATCCAACACCAAC 61.251 60.000 0.00 0.00 0.00 3.77
781 877 0.611896 CCTCCCATCCAACACCAACC 60.612 60.000 0.00 0.00 0.00 3.77
782 878 0.112218 CTCCCATCCAACACCAACCA 59.888 55.000 0.00 0.00 0.00 3.67
783 879 0.112218 TCCCATCCAACACCAACCAG 59.888 55.000 0.00 0.00 0.00 4.00
785 881 1.074727 CCCATCCAACACCAACCAGTA 59.925 52.381 0.00 0.00 0.00 2.74
786 882 2.159382 CCATCCAACACCAACCAGTAC 58.841 52.381 0.00 0.00 0.00 2.73
787 883 2.488167 CCATCCAACACCAACCAGTACA 60.488 50.000 0.00 0.00 0.00 2.90
788 884 2.335316 TCCAACACCAACCAGTACAC 57.665 50.000 0.00 0.00 0.00 2.90
790 886 3.039743 TCCAACACCAACCAGTACACTA 58.960 45.455 0.00 0.00 0.00 2.74
791 887 3.135994 CCAACACCAACCAGTACACTAC 58.864 50.000 0.00 0.00 0.00 2.73
837 939 0.618968 TTTCTCCTCCTCCTCCAGGC 60.619 60.000 0.00 0.00 43.08 4.85
869 971 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
870 972 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
871 973 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
872 974 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
873 975 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
874 976 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
876 978 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
877 979 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
878 980 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
879 981 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
883 985 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
885 987 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
888 990 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
889 991 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
891 993 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
892 994 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
893 995 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
894 996 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
895 997 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
917 1019 9.386010 CTCTCTTTCTGAAATCATTCTTGATCT 57.614 33.333 2.88 0.00 41.83 2.75
973 1075 2.354203 GGAGAACTAGGAGGTGTTGCAG 60.354 54.545 0.00 0.00 0.00 4.41
1038 1838 2.606587 GGAGAGGCCCTTGCTCCAA 61.607 63.158 20.61 0.00 45.89 3.53
1077 1877 4.922206 TCCATCAGGCAAGTACAAAGAAT 58.078 39.130 0.00 0.00 33.74 2.40
1078 1878 6.061022 TCCATCAGGCAAGTACAAAGAATA 57.939 37.500 0.00 0.00 33.74 1.75
1079 1879 6.480763 TCCATCAGGCAAGTACAAAGAATAA 58.519 36.000 0.00 0.00 33.74 1.40
1080 1880 7.118723 TCCATCAGGCAAGTACAAAGAATAAT 58.881 34.615 0.00 0.00 33.74 1.28
1123 1929 2.107378 TGACTACCAAGTTGGGATTGCA 59.893 45.455 25.59 12.43 43.37 4.08
1134 1940 5.385198 AGTTGGGATTGCAAGAAGAGTAAA 58.615 37.500 4.94 0.00 0.00 2.01
1142 1948 4.920376 TGCAAGAAGAGTAAAAGTTGTGC 58.080 39.130 0.00 0.00 0.00 4.57
1143 1949 4.202010 TGCAAGAAGAGTAAAAGTTGTGCC 60.202 41.667 0.00 0.00 0.00 5.01
1144 1950 4.202010 GCAAGAAGAGTAAAAGTTGTGCCA 60.202 41.667 0.00 0.00 0.00 4.92
1145 1951 5.273944 CAAGAAGAGTAAAAGTTGTGCCAC 58.726 41.667 0.00 0.00 0.00 5.01
1146 1952 4.523083 AGAAGAGTAAAAGTTGTGCCACA 58.477 39.130 0.00 0.00 0.00 4.17
1147 1953 5.133221 AGAAGAGTAAAAGTTGTGCCACAT 58.867 37.500 0.00 0.00 0.00 3.21
1148 1954 5.239525 AGAAGAGTAAAAGTTGTGCCACATC 59.760 40.000 0.00 0.00 0.00 3.06
1149 1955 3.821033 AGAGTAAAAGTTGTGCCACATCC 59.179 43.478 0.00 0.00 0.00 3.51
1150 1956 3.561143 AGTAAAAGTTGTGCCACATCCA 58.439 40.909 0.00 0.00 0.00 3.41
1151 1957 3.569701 AGTAAAAGTTGTGCCACATCCAG 59.430 43.478 0.00 0.00 0.00 3.86
1152 1958 2.071778 AAAGTTGTGCCACATCCAGT 57.928 45.000 0.00 0.00 0.00 4.00
1164 1970 3.947868 CACATCCAGTGGAGATTGAACT 58.052 45.455 18.69 0.00 44.69 3.01
1165 1971 5.089970 CACATCCAGTGGAGATTGAACTA 57.910 43.478 18.69 0.00 44.69 2.24
1216 2022 6.819397 AAAACCTTGATCTAGTTAGTTGCC 57.181 37.500 3.47 0.00 0.00 4.52
1227 2036 3.221771 AGTTAGTTGCCATGTCAAAGCA 58.778 40.909 0.00 0.00 33.97 3.91
1236 2045 3.181506 GCCATGTCAAAGCAGCTACTAAC 60.182 47.826 0.00 0.00 0.00 2.34
1239 2048 4.336889 TGTCAAAGCAGCTACTAACTGT 57.663 40.909 0.00 0.00 37.47 3.55
1241 2050 6.037786 TGTCAAAGCAGCTACTAACTGTAT 57.962 37.500 0.00 0.00 37.47 2.29
1257 2066 6.481954 AACTGTATGTTTGTTAGTAGCAGC 57.518 37.500 0.00 0.00 34.84 5.25
1258 2067 4.935808 ACTGTATGTTTGTTAGTAGCAGCC 59.064 41.667 0.00 0.00 0.00 4.85
1260 2069 5.175859 TGTATGTTTGTTAGTAGCAGCCTC 58.824 41.667 0.00 0.00 0.00 4.70
1271 2092 1.448013 GCAGCCTCAAGTCCGGTAC 60.448 63.158 0.00 0.00 0.00 3.34
1283 2104 4.844349 AGTCCGGTACTTGGTACTAGTA 57.156 45.455 0.00 0.00 38.85 1.82
1295 2116 7.628234 ACTTGGTACTAGTAGTAGCTGAGTAA 58.372 38.462 29.96 18.95 46.31 2.24
1296 2117 7.769970 ACTTGGTACTAGTAGTAGCTGAGTAAG 59.230 40.741 29.96 25.85 46.31 2.34
1304 2125 7.571080 AGTAGTAGCTGAGTAAGTTCATACC 57.429 40.000 0.00 0.00 0.00 2.73
1310 2133 6.868622 AGCTGAGTAAGTTCATACCTAACAG 58.131 40.000 0.00 0.00 0.00 3.16
1312 2135 7.038941 AGCTGAGTAAGTTCATACCTAACAGTT 60.039 37.037 0.00 0.00 0.00 3.16
1332 2155 8.530269 ACAGTTATAAAACTAGCAGTGTACAC 57.470 34.615 18.56 18.56 44.28 2.90
1334 2157 7.539710 CAGTTATAAAACTAGCAGTGTACACGA 59.460 37.037 19.93 6.57 44.28 4.35
1344 2167 3.123804 CAGTGTACACGAAGCAAGTTCT 58.876 45.455 19.93 0.00 36.20 3.01
1346 2169 2.864343 GTGTACACGAAGCAAGTTCTGT 59.136 45.455 10.84 0.00 33.65 3.41
1347 2170 3.060473 GTGTACACGAAGCAAGTTCTGTC 60.060 47.826 10.84 0.00 32.31 3.51
1364 2187 0.528470 GTCTGGTTCTGAGTCCGAGG 59.472 60.000 0.00 0.00 0.00 4.63
1393 2216 8.972662 TTGATACTCCCTCTGATCCATATTAA 57.027 34.615 0.00 0.00 0.00 1.40
1455 2318 9.903190 ATTAATATGAATTGGAGGGAGGATTTT 57.097 29.630 0.00 0.00 0.00 1.82
1479 2342 7.014912 TTTTTCCGAAAAAGGGAATACCCCG 62.015 44.000 13.84 0.00 43.54 5.73
1531 2400 5.363005 ACGTGCCACTAGGAAATAAGTAGAT 59.637 40.000 0.00 0.00 36.89 1.98
1532 2401 5.921408 CGTGCCACTAGGAAATAAGTAGATC 59.079 44.000 0.00 0.00 36.89 2.75
1533 2402 6.461092 CGTGCCACTAGGAAATAAGTAGATCA 60.461 42.308 0.00 0.00 36.89 2.92
1534 2403 7.445945 GTGCCACTAGGAAATAAGTAGATCAT 58.554 38.462 0.00 0.00 36.89 2.45
1535 2404 8.585881 GTGCCACTAGGAAATAAGTAGATCATA 58.414 37.037 0.00 0.00 36.89 2.15
1536 2405 8.585881 TGCCACTAGGAAATAAGTAGATCATAC 58.414 37.037 0.00 0.00 36.89 2.39
1558 2427 5.482908 ACTCATAGCAGAGGTTTTACTGTG 58.517 41.667 5.93 0.00 39.97 3.66
1587 2459 2.028020 GGATGGGGATTCGAGATACACC 60.028 54.545 0.00 0.00 0.00 4.16
1600 2472 4.250464 GAGATACACCAATGACGGAACAA 58.750 43.478 0.00 0.00 0.00 2.83
1602 2474 4.635765 AGATACACCAATGACGGAACAATG 59.364 41.667 0.00 0.00 0.00 2.82
1663 2535 1.627329 ACTGGAGAGCATGCTTCTTCA 59.373 47.619 23.61 21.50 0.00 3.02
1677 2549 7.117523 GCATGCTTCTTCATCTTAGGTATACTG 59.882 40.741 11.37 0.00 0.00 2.74
1916 2795 2.513897 ACGCCGCTTATTGGAGCC 60.514 61.111 0.00 0.00 39.51 4.70
1943 2822 0.178068 CAGACACGTATTGGGGGAGG 59.822 60.000 0.00 0.00 0.00 4.30
1984 2863 2.093606 TCCTCTCAGTCTACATCGTCGT 60.094 50.000 0.00 0.00 0.00 4.34
1985 2864 3.131755 TCCTCTCAGTCTACATCGTCGTA 59.868 47.826 0.00 0.00 0.00 3.43
1986 2865 3.869832 CCTCTCAGTCTACATCGTCGTAA 59.130 47.826 0.00 0.00 0.00 3.18
1987 2866 4.025563 CCTCTCAGTCTACATCGTCGTAAG 60.026 50.000 0.00 0.00 0.00 2.34
1988 2867 4.502016 TCTCAGTCTACATCGTCGTAAGT 58.498 43.478 0.00 0.00 39.48 2.24
1989 2868 4.329256 TCTCAGTCTACATCGTCGTAAGTG 59.671 45.833 0.00 0.00 39.48 3.16
1990 2869 4.248058 TCAGTCTACATCGTCGTAAGTGA 58.752 43.478 0.00 0.00 39.48 3.41
1991 2870 4.692155 TCAGTCTACATCGTCGTAAGTGAA 59.308 41.667 0.00 0.00 39.48 3.18
1992 2871 5.179929 TCAGTCTACATCGTCGTAAGTGAAA 59.820 40.000 0.00 0.00 39.48 2.69
1993 2872 5.283247 CAGTCTACATCGTCGTAAGTGAAAC 59.717 44.000 0.00 0.00 39.48 2.78
1994 2873 5.049198 AGTCTACATCGTCGTAAGTGAAACA 60.049 40.000 0.00 0.00 41.43 2.83
1995 2874 5.798934 GTCTACATCGTCGTAAGTGAAACAT 59.201 40.000 0.00 0.00 41.43 2.71
1996 2875 6.963242 GTCTACATCGTCGTAAGTGAAACATA 59.037 38.462 0.00 0.00 41.43 2.29
1997 2876 7.642978 GTCTACATCGTCGTAAGTGAAACATAT 59.357 37.037 0.00 0.00 41.43 1.78
1998 2877 6.569228 ACATCGTCGTAAGTGAAACATATG 57.431 37.500 0.00 0.00 41.43 1.78
1999 2878 6.097356 ACATCGTCGTAAGTGAAACATATGT 58.903 36.000 1.41 1.41 41.43 2.29
2000 2879 6.588756 ACATCGTCGTAAGTGAAACATATGTT 59.411 34.615 15.47 15.47 41.43 2.71
2001 2880 6.384178 TCGTCGTAAGTGAAACATATGTTG 57.616 37.500 21.46 6.88 41.43 3.33
2002 2881 5.921976 TCGTCGTAAGTGAAACATATGTTGT 59.078 36.000 21.46 11.62 41.43 3.32
2003 2882 6.421501 TCGTCGTAAGTGAAACATATGTTGTT 59.578 34.615 21.46 14.23 44.70 2.83
2004 2883 6.515002 CGTCGTAAGTGAAACATATGTTGTTG 59.485 38.462 21.46 6.66 43.02 3.33
2005 2884 7.349711 GTCGTAAGTGAAACATATGTTGTTGT 58.650 34.615 21.46 6.03 43.02 3.32
2006 2885 7.853929 GTCGTAAGTGAAACATATGTTGTTGTT 59.146 33.333 21.46 14.54 43.02 2.83
2007 2886 8.399425 TCGTAAGTGAAACATATGTTGTTGTTT 58.601 29.630 21.46 13.99 43.02 2.83
2046 2963 6.677781 AACATATGTTGTTGATAGGAACCG 57.322 37.500 20.19 0.00 46.80 4.44
2054 2971 6.127168 TGTTGTTGATAGGAACCGATAGACAT 60.127 38.462 0.00 0.00 39.76 3.06
2060 2977 2.628657 AGGAACCGATAGACATAGTGGC 59.371 50.000 0.00 0.00 39.76 5.01
2061 2978 2.628657 GGAACCGATAGACATAGTGGCT 59.371 50.000 0.00 0.00 40.22 4.75
2123 3041 5.904941 TGTGAGCATTCATGAACAACTTTT 58.095 33.333 11.07 0.00 35.39 2.27
2124 3042 6.339730 TGTGAGCATTCATGAACAACTTTTT 58.660 32.000 11.07 0.00 35.39 1.94
2190 3108 0.250038 CGACGCTCCCATGGATGATT 60.250 55.000 15.22 0.00 0.00 2.57
2206 3124 3.805066 TGATTCAATCCTCCAACCACA 57.195 42.857 0.00 0.00 0.00 4.17
2522 3440 6.322712 AGGAGGATCTACAGATACAAGTCAAC 59.677 42.308 4.29 0.00 37.85 3.18
2582 3500 1.226211 CAGCTGCAAGAAATCGCCG 60.226 57.895 0.00 0.00 34.07 6.46
2634 3552 2.185310 ATCACTCGCCTTCACCACCC 62.185 60.000 0.00 0.00 0.00 4.61
2721 3691 9.066892 AGTGAGTAAACATGATAGCTTTTGAAA 57.933 29.630 0.00 0.00 0.00 2.69
2784 3755 2.562912 GCTGCCATTGTGTCACCG 59.437 61.111 0.00 0.00 0.00 4.94
2847 3818 2.287849 GCTATGCGCACTCTCTCATGTA 60.288 50.000 14.90 0.00 38.92 2.29
2971 3942 2.903547 GCAATGGACAACCGCGTGT 61.904 57.895 4.92 3.06 39.42 4.49
2980 3951 1.227704 AACCGCGTGTGGTCATTCA 60.228 52.632 4.92 0.00 42.89 2.57
3018 3989 0.955428 TCGCCAGCTTCAATGTGGTC 60.955 55.000 0.00 0.00 33.51 4.02
3060 4031 5.297547 CCCATATATGACGTTGTGCTAGTT 58.702 41.667 14.54 0.00 0.00 2.24
3066 4037 1.547372 GACGTTGTGCTAGTTCCCCTA 59.453 52.381 0.00 0.00 0.00 3.53
3144 4115 1.004277 GTCTCGCGTTGTCCACTCTG 61.004 60.000 5.77 0.00 0.00 3.35
3269 4249 0.441145 GTGTTTACGGTCATCGGCAC 59.559 55.000 0.00 0.00 44.45 5.01
3313 4293 1.191489 TCCGGACAACATGAGGAGCA 61.191 55.000 0.00 0.00 0.00 4.26
3513 4493 6.674694 TTCTACTCTATGAGGTACAACGAC 57.325 41.667 0.00 0.00 33.35 4.34
3532 4512 2.729882 GACAACGTAGCTTGTCGACAAT 59.270 45.455 29.79 19.12 38.19 2.71
3548 4528 4.005650 CGACAATGCCATCCATATTAGCT 58.994 43.478 0.00 0.00 32.67 3.32
3549 4529 4.456911 CGACAATGCCATCCATATTAGCTT 59.543 41.667 0.00 0.00 32.67 3.74
3550 4530 5.643348 CGACAATGCCATCCATATTAGCTTA 59.357 40.000 0.00 0.00 32.67 3.09
3551 4531 6.317140 CGACAATGCCATCCATATTAGCTTAT 59.683 38.462 0.00 0.00 32.67 1.73
3552 4532 7.400599 ACAATGCCATCCATATTAGCTTATG 57.599 36.000 0.00 0.00 32.67 1.90
3568 4548 6.655078 AGCTTATGGATGTTTCACTTTGTT 57.345 33.333 0.00 0.00 0.00 2.83
3586 4566 3.215151 TGTTAGCAAACACCCGATCAAA 58.785 40.909 0.00 0.00 40.69 2.69
3596 4576 2.484264 CACCCGATCAAACTTCTTGACC 59.516 50.000 0.00 0.00 0.00 4.02
3627 4608 6.655930 TGGGTGGAATTATTTCTACTACCAC 58.344 40.000 11.95 0.00 41.61 4.16
3628 4609 6.215841 TGGGTGGAATTATTTCTACTACCACA 59.784 38.462 0.00 0.00 45.36 4.17
3629 4610 7.114095 GGGTGGAATTATTTCTACTACCACAA 58.886 38.462 0.00 0.00 45.36 3.33
3646 4630 0.740149 CAATTGCGGCATGCCTCTTA 59.260 50.000 33.07 18.30 45.60 2.10
3706 4690 4.939509 TTTCGGCTACTACAAATTGAGC 57.060 40.909 0.00 0.00 0.00 4.26
3726 4714 5.123820 TGAGCAAATGAGCAGGTAATAACAC 59.876 40.000 0.00 0.00 36.85 3.32
3802 4790 8.230486 ACACTGATTTTTCGCTTAATTGTAGAG 58.770 33.333 0.00 0.00 0.00 2.43
3830 4818 5.128008 TCGACATCATTGGTGGTCTAACATA 59.872 40.000 1.31 0.00 0.00 2.29
3831 4819 5.463392 CGACATCATTGGTGGTCTAACATAG 59.537 44.000 1.31 0.00 0.00 2.23
3833 4821 7.141758 ACATCATTGGTGGTCTAACATAGAT 57.858 36.000 1.31 0.00 37.13 1.98
3834 4822 6.994496 ACATCATTGGTGGTCTAACATAGATG 59.006 38.462 12.12 12.12 37.13 2.90
3835 4823 5.368145 TCATTGGTGGTCTAACATAGATGC 58.632 41.667 0.00 0.00 37.13 3.91
3836 4824 3.452755 TGGTGGTCTAACATAGATGCG 57.547 47.619 0.00 0.00 37.13 4.73
3837 4825 3.028130 TGGTGGTCTAACATAGATGCGA 58.972 45.455 0.00 0.00 37.13 5.10
3838 4826 3.449377 TGGTGGTCTAACATAGATGCGAA 59.551 43.478 0.00 0.00 37.13 4.70
3839 4827 3.802685 GGTGGTCTAACATAGATGCGAAC 59.197 47.826 0.00 0.00 37.13 3.95
3840 4828 4.441634 GGTGGTCTAACATAGATGCGAACT 60.442 45.833 0.00 0.00 37.13 3.01
3841 4829 4.504461 GTGGTCTAACATAGATGCGAACTG 59.496 45.833 0.00 0.00 37.13 3.16
3842 4830 3.491267 GGTCTAACATAGATGCGAACTGC 59.509 47.826 0.00 0.00 46.70 4.40
3843 4831 4.363999 GTCTAACATAGATGCGAACTGCT 58.636 43.478 0.00 0.00 46.63 4.24
3844 4832 4.208047 GTCTAACATAGATGCGAACTGCTG 59.792 45.833 0.00 0.00 46.63 4.41
3845 4833 2.967599 ACATAGATGCGAACTGCTGA 57.032 45.000 0.00 0.00 46.63 4.26
3846 4834 3.251479 ACATAGATGCGAACTGCTGAA 57.749 42.857 0.00 0.00 46.63 3.02
3847 4835 3.193263 ACATAGATGCGAACTGCTGAAG 58.807 45.455 0.00 0.00 46.63 3.02
3848 4836 1.645034 TAGATGCGAACTGCTGAAGC 58.355 50.000 0.00 0.00 46.63 3.86
3849 4837 0.036577 AGATGCGAACTGCTGAAGCT 60.037 50.000 3.61 0.00 46.63 3.74
3850 4838 0.373024 GATGCGAACTGCTGAAGCTC 59.627 55.000 3.61 0.00 46.63 4.09
3851 4839 1.357258 ATGCGAACTGCTGAAGCTCG 61.357 55.000 4.08 4.08 46.63 5.03
3852 4840 2.734673 GCGAACTGCTGAAGCTCGG 61.735 63.158 10.25 2.87 42.66 4.63
3861 4849 1.203928 CTGAAGCTCGGCATAGAACG 58.796 55.000 0.00 0.00 0.00 3.95
3862 4850 0.815095 TGAAGCTCGGCATAGAACGA 59.185 50.000 0.00 0.00 37.56 3.85
3870 4858 4.118093 TCGGCATAGAACGAGAATTTGA 57.882 40.909 0.00 0.00 34.67 2.69
3871 4859 4.693283 TCGGCATAGAACGAGAATTTGAT 58.307 39.130 0.00 0.00 34.67 2.57
3872 4860 4.507756 TCGGCATAGAACGAGAATTTGATG 59.492 41.667 0.00 0.00 34.67 3.07
3873 4861 4.507756 CGGCATAGAACGAGAATTTGATGA 59.492 41.667 0.00 0.00 0.00 2.92
3874 4862 5.332883 CGGCATAGAACGAGAATTTGATGAG 60.333 44.000 0.00 0.00 0.00 2.90
3875 4863 5.755375 GGCATAGAACGAGAATTTGATGAGA 59.245 40.000 0.00 0.00 0.00 3.27
3876 4864 6.073873 GGCATAGAACGAGAATTTGATGAGAG 60.074 42.308 0.00 0.00 0.00 3.20
3877 4865 6.699204 GCATAGAACGAGAATTTGATGAGAGA 59.301 38.462 0.00 0.00 0.00 3.10
3878 4866 7.096106 GCATAGAACGAGAATTTGATGAGAGAG 60.096 40.741 0.00 0.00 0.00 3.20
3879 4867 5.659463 AGAACGAGAATTTGATGAGAGAGG 58.341 41.667 0.00 0.00 0.00 3.69
3880 4868 3.791245 ACGAGAATTTGATGAGAGAGGC 58.209 45.455 0.00 0.00 0.00 4.70
3881 4869 2.793790 CGAGAATTTGATGAGAGAGGCG 59.206 50.000 0.00 0.00 0.00 5.52
3882 4870 3.736433 CGAGAATTTGATGAGAGAGGCGT 60.736 47.826 0.00 0.00 0.00 5.68
3883 4871 3.529533 AGAATTTGATGAGAGAGGCGTG 58.470 45.455 0.00 0.00 0.00 5.34
3884 4872 1.661341 ATTTGATGAGAGAGGCGTGC 58.339 50.000 0.00 0.00 0.00 5.34
3885 4873 0.610174 TTTGATGAGAGAGGCGTGCT 59.390 50.000 0.00 0.00 0.00 4.40
3886 4874 0.174389 TTGATGAGAGAGGCGTGCTC 59.826 55.000 0.00 0.00 0.00 4.26
3887 4875 0.967380 TGATGAGAGAGGCGTGCTCA 60.967 55.000 10.01 10.01 42.25 4.26
3888 4876 0.527385 GATGAGAGAGGCGTGCTCAC 60.527 60.000 9.85 4.32 41.02 3.51
3889 4877 1.253593 ATGAGAGAGGCGTGCTCACA 61.254 55.000 9.85 8.75 41.02 3.58
3890 4878 1.153862 GAGAGAGGCGTGCTCACAG 60.154 63.158 7.58 0.00 34.85 3.66
3891 4879 1.872197 GAGAGAGGCGTGCTCACAGT 61.872 60.000 7.58 0.00 34.85 3.55
3892 4880 1.005630 GAGAGGCGTGCTCACAGTT 60.006 57.895 0.69 0.00 32.67 3.16
3893 4881 1.287730 GAGAGGCGTGCTCACAGTTG 61.288 60.000 0.69 0.00 32.67 3.16
3894 4882 2.959357 GAGGCGTGCTCACAGTTGC 61.959 63.158 0.69 0.00 0.00 4.17
3895 4883 3.279116 GGCGTGCTCACAGTTGCA 61.279 61.111 0.69 0.00 36.79 4.08
3896 4884 2.620112 GGCGTGCTCACAGTTGCAT 61.620 57.895 1.75 0.00 41.45 3.96
3897 4885 1.154338 GCGTGCTCACAGTTGCATC 60.154 57.895 1.75 0.00 41.45 3.91
3898 4886 1.499056 CGTGCTCACAGTTGCATCC 59.501 57.895 1.75 0.00 41.45 3.51
3899 4887 1.229975 CGTGCTCACAGTTGCATCCA 61.230 55.000 1.75 0.00 41.45 3.41
3900 4888 1.171308 GTGCTCACAGTTGCATCCAT 58.829 50.000 1.75 0.00 41.45 3.41
3901 4889 1.135489 GTGCTCACAGTTGCATCCATG 60.135 52.381 1.75 0.00 41.45 3.66
3902 4890 1.271488 TGCTCACAGTTGCATCCATGA 60.271 47.619 0.00 0.00 33.94 3.07
3903 4891 1.131883 GCTCACAGTTGCATCCATGAC 59.868 52.381 0.00 0.00 0.00 3.06
3904 4892 1.395954 CTCACAGTTGCATCCATGACG 59.604 52.381 0.00 0.00 0.00 4.35
3905 4893 0.448990 CACAGTTGCATCCATGACGG 59.551 55.000 0.00 0.00 0.00 4.79
3913 4901 3.284336 TCCATGACGGACGACTGG 58.716 61.111 0.00 2.45 39.64 4.00
3914 4902 2.184322 CCATGACGGACGACTGGG 59.816 66.667 0.00 0.00 36.56 4.45
3915 4903 2.509336 CATGACGGACGACTGGGC 60.509 66.667 0.00 0.00 0.00 5.36
3916 4904 3.771160 ATGACGGACGACTGGGCC 61.771 66.667 0.00 0.00 0.00 5.80
3932 4920 4.473520 CCGGTGCGATGGGCTTCT 62.474 66.667 0.00 0.00 44.05 2.85
3933 4921 2.436646 CGGTGCGATGGGCTTCTT 60.437 61.111 0.00 0.00 44.05 2.52
3934 4922 2.464459 CGGTGCGATGGGCTTCTTC 61.464 63.158 0.00 0.00 44.05 2.87
3935 4923 2.464459 GGTGCGATGGGCTTCTTCG 61.464 63.158 9.98 9.98 44.05 3.79
3936 4924 1.741770 GTGCGATGGGCTTCTTCGT 60.742 57.895 13.72 0.00 42.67 3.85
3937 4925 1.741401 TGCGATGGGCTTCTTCGTG 60.741 57.895 13.72 0.00 42.67 4.35
3938 4926 2.464459 GCGATGGGCTTCTTCGTGG 61.464 63.158 13.72 0.00 42.67 4.94
3939 4927 1.815421 CGATGGGCTTCTTCGTGGG 60.815 63.158 7.38 0.00 37.98 4.61
3940 4928 1.452108 GATGGGCTTCTTCGTGGGG 60.452 63.158 0.00 0.00 0.00 4.96
3941 4929 1.910580 GATGGGCTTCTTCGTGGGGA 61.911 60.000 0.00 0.00 0.00 4.81
3942 4930 1.281925 ATGGGCTTCTTCGTGGGGAT 61.282 55.000 0.00 0.00 0.00 3.85
3943 4931 1.452108 GGGCTTCTTCGTGGGGATG 60.452 63.158 0.00 0.00 0.00 3.51
3944 4932 2.115291 GGCTTCTTCGTGGGGATGC 61.115 63.158 0.00 0.00 33.65 3.91
3945 4933 1.078143 GCTTCTTCGTGGGGATGCT 60.078 57.895 0.00 0.00 32.33 3.79
3946 4934 0.178068 GCTTCTTCGTGGGGATGCTA 59.822 55.000 0.00 0.00 32.33 3.49
3947 4935 1.808133 GCTTCTTCGTGGGGATGCTAG 60.808 57.143 0.00 0.00 32.33 3.42
3948 4936 0.178068 TTCTTCGTGGGGATGCTAGC 59.822 55.000 8.10 8.10 0.00 3.42
3949 4937 0.975556 TCTTCGTGGGGATGCTAGCA 60.976 55.000 21.85 21.85 0.00 3.49
3950 4938 0.811616 CTTCGTGGGGATGCTAGCAC 60.812 60.000 22.07 13.80 0.00 4.40
3951 4939 2.572095 TTCGTGGGGATGCTAGCACG 62.572 60.000 22.07 17.78 37.39 5.34
3952 4940 2.203070 GTGGGGATGCTAGCACGG 60.203 66.667 22.07 0.00 0.00 4.94
3953 4941 4.175337 TGGGGATGCTAGCACGGC 62.175 66.667 22.07 12.42 0.00 5.68
3954 4942 3.866582 GGGGATGCTAGCACGGCT 61.867 66.667 22.07 3.31 43.41 5.52
3955 4943 2.590007 GGGATGCTAGCACGGCTG 60.590 66.667 22.07 0.00 40.10 4.85
3956 4944 2.501128 GGATGCTAGCACGGCTGA 59.499 61.111 22.07 0.00 40.10 4.26
3957 4945 1.070445 GGATGCTAGCACGGCTGAT 59.930 57.895 22.07 1.02 40.10 2.90
3958 4946 0.948141 GGATGCTAGCACGGCTGATC 60.948 60.000 22.07 11.68 40.10 2.92
3959 4947 0.033228 GATGCTAGCACGGCTGATCT 59.967 55.000 22.07 0.00 40.10 2.75
3960 4948 0.249784 ATGCTAGCACGGCTGATCTG 60.250 55.000 22.07 0.00 40.10 2.90
3961 4949 2.243264 GCTAGCACGGCTGATCTGC 61.243 63.158 15.69 15.69 40.10 4.26
3962 4950 1.948138 CTAGCACGGCTGATCTGCG 60.948 63.158 17.16 14.47 40.10 5.18
3963 4951 2.341807 CTAGCACGGCTGATCTGCGA 62.342 60.000 17.16 2.88 40.10 5.10
3964 4952 2.341807 TAGCACGGCTGATCTGCGAG 62.342 60.000 17.16 15.47 40.10 5.03
3965 4953 2.491621 CACGGCTGATCTGCGAGA 59.508 61.111 17.16 0.00 0.00 4.04
3966 4954 1.067084 CACGGCTGATCTGCGAGAT 59.933 57.895 17.16 1.31 37.73 2.75
3972 4960 2.653702 GATCTGCGAGATCCCCGG 59.346 66.667 12.51 0.00 44.08 5.73
3973 4961 3.581687 GATCTGCGAGATCCCCGGC 62.582 68.421 12.51 0.00 44.08 6.13
4001 4989 4.748144 GGAGGTTGGGGCCTGCTG 62.748 72.222 0.84 0.00 42.73 4.41
4028 5016 4.189188 GCGCATGCTGGCTGGAAG 62.189 66.667 17.13 0.00 38.39 3.46
4029 5017 2.437180 CGCATGCTGGCTGGAAGA 60.437 61.111 17.13 0.00 34.07 2.87
4077 5065 4.439057 GGTATGATTTAAGCGAGACACCA 58.561 43.478 0.00 0.00 0.00 4.17
4080 5068 3.585862 TGATTTAAGCGAGACACCAGTC 58.414 45.455 0.00 0.00 45.31 3.51
4097 5085 4.569564 ACCAGTCGAGAAACACAAAGTAAC 59.430 41.667 0.00 0.00 0.00 2.50
4137 5125 8.356657 CGATAGTTACATCAAAGATCTCCTTCT 58.643 37.037 0.00 0.00 33.02 2.85
4139 5127 7.487822 AGTTACATCAAAGATCTCCTTCTGA 57.512 36.000 0.00 0.00 33.02 3.27
4223 5294 5.835113 AATAATACACACCCATTCACTGC 57.165 39.130 0.00 0.00 0.00 4.40
4228 5299 0.037303 ACACCCATTCACTGCCTCAG 59.963 55.000 0.00 0.00 37.52 3.35
4257 5328 1.666234 GCTCAGCTATACTGCGGCC 60.666 63.158 0.00 0.00 46.76 6.13
4258 5329 2.045280 CTCAGCTATACTGCGGCCT 58.955 57.895 0.00 0.00 46.76 5.19
4260 5331 0.468214 TCAGCTATACTGCGGCCTCT 60.468 55.000 0.00 0.00 46.76 3.69
4271 5342 2.654079 CGGCCTCTCAAGCTCCTGT 61.654 63.158 0.00 0.00 0.00 4.00
4474 5609 3.775654 CACGAGTCCTGGGAGGCC 61.776 72.222 0.00 0.00 34.61 5.19
4519 5654 1.229658 CCTCAAGGTGACCCCTCCT 60.230 63.158 0.00 0.00 45.47 3.69
4521 5656 0.545309 CTCAAGGTGACCCCTCCTCA 60.545 60.000 0.00 0.00 45.47 3.86
4522 5657 0.104672 TCAAGGTGACCCCTCCTCAA 60.105 55.000 0.00 0.00 45.47 3.02
4523 5658 0.326264 CAAGGTGACCCCTCCTCAAG 59.674 60.000 0.00 0.00 45.47 3.02
4524 5659 0.842467 AAGGTGACCCCTCCTCAAGG 60.842 60.000 0.00 0.00 45.47 3.61
4561 5702 3.435186 GGGCTTTCGGCTGCTGAC 61.435 66.667 11.39 0.00 41.46 3.51
4562 5703 2.359230 GGCTTTCGGCTGCTGACT 60.359 61.111 11.39 0.00 41.46 3.41
4563 5704 1.079127 GGCTTTCGGCTGCTGACTA 60.079 57.895 11.39 1.44 41.46 2.59
4564 5705 1.362406 GGCTTTCGGCTGCTGACTAC 61.362 60.000 11.39 3.02 41.46 2.73
4588 5729 0.319986 TGTGTGCTCGCGGAAATGTA 60.320 50.000 6.13 0.00 0.00 2.29
4589 5730 0.793861 GTGTGCTCGCGGAAATGTAA 59.206 50.000 6.13 0.00 0.00 2.41
4590 5731 1.396996 GTGTGCTCGCGGAAATGTAAT 59.603 47.619 6.13 0.00 0.00 1.89
4591 5732 1.396648 TGTGCTCGCGGAAATGTAATG 59.603 47.619 6.13 0.00 0.00 1.90
4592 5733 1.396996 GTGCTCGCGGAAATGTAATGT 59.603 47.619 6.13 0.00 0.00 2.71
4606 5747 2.101415 TGTAATGTCAGGCGGATGAGAG 59.899 50.000 0.00 0.00 0.00 3.20
4609 5750 1.227205 GTCAGGCGGATGAGAGCAG 60.227 63.158 0.00 0.00 34.54 4.24
4625 5766 2.367512 AGGAGGATGTGGGAGGCC 60.368 66.667 0.00 0.00 0.00 5.19
4627 5768 2.308722 GGAGGATGTGGGAGGCCAA 61.309 63.158 5.01 0.00 0.00 4.52
4628 5769 1.077429 GAGGATGTGGGAGGCCAAC 60.077 63.158 5.01 0.00 0.00 3.77
4635 5776 3.455469 GGGAGGCCAACTGCATGC 61.455 66.667 11.82 11.82 43.89 4.06
4638 5779 3.951769 GAGGCCAACTGCATGCCCT 62.952 63.158 16.68 13.10 46.55 5.19
4639 5780 3.455469 GGCCAACTGCATGCCCTC 61.455 66.667 16.68 0.00 43.89 4.30
4640 5781 3.455469 GCCAACTGCATGCCCTCC 61.455 66.667 16.68 0.00 40.77 4.30
4641 5782 3.136123 CCAACTGCATGCCCTCCG 61.136 66.667 16.68 0.00 0.00 4.63
4642 5783 3.136123 CAACTGCATGCCCTCCGG 61.136 66.667 16.68 0.00 0.00 5.14
4652 5793 4.530857 CCCTCCGGCGATGACCAC 62.531 72.222 9.30 0.00 0.00 4.16
4653 5794 4.530857 CCTCCGGCGATGACCACC 62.531 72.222 9.30 0.00 0.00 4.61
4654 5795 4.873129 CTCCGGCGATGACCACCG 62.873 72.222 9.30 0.00 46.50 4.94
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
56 57 4.319261 GGTGTGTCCTTACATCGTTTTGTC 60.319 45.833 0.00 0.00 38.08 3.18
227 300 2.413351 CAGATCCCGTCGTGCGAT 59.587 61.111 0.00 0.00 44.77 4.58
482 560 7.696017 ACCCCATAAAAGTCATACAGTAACTT 58.304 34.615 0.00 0.00 34.81 2.66
588 676 8.614469 TTGTTGGGGAAATGTTATTGATTTTC 57.386 30.769 0.00 0.00 0.00 2.29
589 677 9.230122 GATTGTTGGGGAAATGTTATTGATTTT 57.770 29.630 0.00 0.00 0.00 1.82
671 759 2.638363 AGAGGAACCTACAAACCTGTCC 59.362 50.000 0.00 0.00 36.96 4.02
677 765 5.049886 CGGTTGTTAAGAGGAACCTACAAAC 60.050 44.000 10.49 10.49 37.57 2.93
747 843 2.316108 GGGAGGCACCAAGAAAGAAAA 58.684 47.619 2.69 0.00 41.20 2.29
785 881 3.076621 TGAATGAGGACGTACGTAGTGT 58.923 45.455 22.87 5.92 45.73 3.55
786 882 3.126514 AGTGAATGAGGACGTACGTAGTG 59.873 47.826 22.87 0.00 45.73 2.74
788 884 3.681855 CAGTGAATGAGGACGTACGTAG 58.318 50.000 22.87 0.00 0.00 3.51
790 886 1.402456 GCAGTGAATGAGGACGTACGT 60.402 52.381 23.04 23.04 0.00 3.57
791 887 1.269166 GCAGTGAATGAGGACGTACG 58.731 55.000 15.01 15.01 0.00 3.67
802 898 3.371380 GGAGAAAGATGGAGGCAGTGAAT 60.371 47.826 0.00 0.00 0.00 2.57
837 939 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
869 971 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
870 972 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
871 973 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
872 974 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
873 975 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
874 976 5.136068 AGAGAGAGAGAGAGAGAGAGAGA 57.864 47.826 0.00 0.00 0.00 3.10
876 978 5.960811 AGAAAGAGAGAGAGAGAGAGAGAGA 59.039 44.000 0.00 0.00 0.00 3.10
877 979 6.047870 CAGAAAGAGAGAGAGAGAGAGAGAG 58.952 48.000 0.00 0.00 0.00 3.20
878 980 5.721480 TCAGAAAGAGAGAGAGAGAGAGAGA 59.279 44.000 0.00 0.00 0.00 3.10
879 981 5.982356 TCAGAAAGAGAGAGAGAGAGAGAG 58.018 45.833 0.00 0.00 0.00 3.20
883 985 7.395190 TGATTTCAGAAAGAGAGAGAGAGAG 57.605 40.000 1.28 0.00 0.00 3.20
885 987 8.472413 AGAATGATTTCAGAAAGAGAGAGAGAG 58.528 37.037 1.28 0.00 34.08 3.20
888 990 8.591940 TCAAGAATGATTTCAGAAAGAGAGAGA 58.408 33.333 1.28 0.00 34.08 3.10
889 991 8.774890 TCAAGAATGATTTCAGAAAGAGAGAG 57.225 34.615 1.28 0.00 34.08 3.20
891 993 9.386010 AGATCAAGAATGATTTCAGAAAGAGAG 57.614 33.333 1.28 0.00 46.30 3.20
892 994 9.736414 AAGATCAAGAATGATTTCAGAAAGAGA 57.264 29.630 1.28 0.00 46.30 3.10
893 995 9.776158 CAAGATCAAGAATGATTTCAGAAAGAG 57.224 33.333 1.28 0.00 46.30 2.85
894 996 9.293404 ACAAGATCAAGAATGATTTCAGAAAGA 57.707 29.630 1.28 0.00 46.30 2.52
895 997 9.343103 CACAAGATCAAGAATGATTTCAGAAAG 57.657 33.333 1.28 0.00 46.30 2.62
917 1019 6.848800 CGACACTCGAAAAATTACAATCACAA 59.151 34.615 0.00 0.00 43.74 3.33
928 1030 3.741344 CCTTCAGACGACACTCGAAAAAT 59.259 43.478 0.00 0.00 43.74 1.82
996 1796 3.145551 CCTGCTGCTTCCATGGCC 61.146 66.667 6.96 0.00 0.00 5.36
1038 1838 1.536662 GAGGTGAGGAGGTGGGTGT 60.537 63.158 0.00 0.00 0.00 4.16
1077 1877 8.465999 CAACAGGAAACAAATGCTATGGTATTA 58.534 33.333 0.00 0.00 0.00 0.98
1078 1878 7.178274 TCAACAGGAAACAAATGCTATGGTATT 59.822 33.333 0.00 0.00 0.00 1.89
1079 1879 6.663093 TCAACAGGAAACAAATGCTATGGTAT 59.337 34.615 0.00 0.00 0.00 2.73
1080 1880 6.007076 TCAACAGGAAACAAATGCTATGGTA 58.993 36.000 0.00 0.00 0.00 3.25
1123 1929 4.947388 TGTGGCACAACTTTTACTCTTCTT 59.053 37.500 19.74 0.00 44.16 2.52
1134 1940 1.321474 CACTGGATGTGGCACAACTT 58.679 50.000 25.95 8.39 44.16 2.66
1143 1949 3.947868 AGTTCAATCTCCACTGGATGTG 58.052 45.455 0.00 0.00 45.80 3.21
1144 1950 5.762179 TTAGTTCAATCTCCACTGGATGT 57.238 39.130 0.00 0.00 0.00 3.06
1145 1951 6.351711 TGATTAGTTCAATCTCCACTGGATG 58.648 40.000 0.00 0.00 43.10 3.51
1146 1952 6.566079 TGATTAGTTCAATCTCCACTGGAT 57.434 37.500 0.00 0.00 43.10 3.41
1147 1953 6.213397 TCTTGATTAGTTCAATCTCCACTGGA 59.787 38.462 0.00 0.00 43.30 3.86
1148 1954 6.409704 TCTTGATTAGTTCAATCTCCACTGG 58.590 40.000 0.00 0.00 43.30 4.00
1149 1955 8.503458 AATCTTGATTAGTTCAATCTCCACTG 57.497 34.615 0.00 0.00 43.30 3.66
1150 1956 9.829507 CTAATCTTGATTAGTTCAATCTCCACT 57.170 33.333 17.61 0.00 43.30 4.00
1151 1957 9.606631 ACTAATCTTGATTAGTTCAATCTCCAC 57.393 33.333 22.94 0.00 42.79 4.02
1152 1958 9.605275 CACTAATCTTGATTAGTTCAATCTCCA 57.395 33.333 24.94 0.00 42.79 3.86
1153 1959 9.823647 TCACTAATCTTGATTAGTTCAATCTCC 57.176 33.333 24.94 0.00 42.79 3.71
1194 2000 5.876357 TGGCAACTAACTAGATCAAGGTTT 58.124 37.500 0.00 0.00 37.61 3.27
1197 2003 5.431765 ACATGGCAACTAACTAGATCAAGG 58.568 41.667 0.00 0.00 37.61 3.61
1201 2007 6.457528 GCTTTGACATGGCAACTAACTAGATC 60.458 42.308 15.21 0.00 37.61 2.75
1211 2017 0.316204 AGCTGCTTTGACATGGCAAC 59.684 50.000 15.21 3.93 35.49 4.17
1213 2019 1.167851 GTAGCTGCTTTGACATGGCA 58.832 50.000 7.79 0.00 34.66 4.92
1215 2021 4.093998 CAGTTAGTAGCTGCTTTGACATGG 59.906 45.833 10.41 0.00 0.00 3.66
1216 2022 4.692625 ACAGTTAGTAGCTGCTTTGACATG 59.307 41.667 10.41 9.22 37.47 3.21
1236 2045 5.178797 AGGCTGCTACTAACAAACATACAG 58.821 41.667 0.00 0.00 0.00 2.74
1239 2048 5.414789 TGAGGCTGCTACTAACAAACATA 57.585 39.130 0.00 0.00 0.00 2.29
1241 2050 3.762407 TGAGGCTGCTACTAACAAACA 57.238 42.857 0.00 0.00 0.00 2.83
1271 2092 7.769970 ACTTACTCAGCTACTACTAGTACCAAG 59.230 40.741 0.00 0.00 0.00 3.61
1274 2095 7.768120 TGAACTTACTCAGCTACTACTAGTACC 59.232 40.741 0.00 0.00 0.00 3.34
1283 2104 7.614583 TGTTAGGTATGAACTTACTCAGCTACT 59.385 37.037 0.00 0.00 0.00 2.57
1302 2123 8.373220 ACACTGCTAGTTTTATAACTGTTAGGT 58.627 33.333 8.63 0.00 44.22 3.08
1310 2133 7.801547 TCGTGTACACTGCTAGTTTTATAAC 57.198 36.000 23.01 0.00 34.36 1.89
1312 2135 6.529125 GCTTCGTGTACACTGCTAGTTTTATA 59.471 38.462 23.01 0.00 0.00 0.98
1319 2142 2.347697 TGCTTCGTGTACACTGCTAG 57.652 50.000 23.01 14.58 0.00 3.42
1332 2155 1.871080 ACCAGACAGAACTTGCTTCG 58.129 50.000 0.00 0.00 33.60 3.79
1334 2157 3.118261 TCAGAACCAGACAGAACTTGCTT 60.118 43.478 0.00 0.00 0.00 3.91
1344 2167 1.248486 CTCGGACTCAGAACCAGACA 58.752 55.000 0.00 0.00 0.00 3.41
1346 2169 0.612174 CCCTCGGACTCAGAACCAGA 60.612 60.000 0.00 0.00 0.00 3.86
1347 2170 1.608717 CCCCTCGGACTCAGAACCAG 61.609 65.000 0.00 0.00 0.00 4.00
1364 2187 3.071747 GGATCAGAGGGAGTATCAAACCC 59.928 52.174 0.00 0.00 43.55 4.11
1377 2200 6.091849 CAGCGACAATTAATATGGATCAGAGG 59.908 42.308 0.00 0.00 0.00 3.69
1378 2201 6.648310 ACAGCGACAATTAATATGGATCAGAG 59.352 38.462 0.00 0.00 0.00 3.35
1425 2248 9.728100 TCCTCCCTCCAATTCATATTAATTTTT 57.272 29.630 0.00 0.00 0.00 1.94
1427 2250 9.903190 AATCCTCCCTCCAATTCATATTAATTT 57.097 29.630 0.00 0.00 0.00 1.82
1428 2251 9.903190 AAATCCTCCCTCCAATTCATATTAATT 57.097 29.630 0.00 0.00 0.00 1.40
1429 2252 9.903190 AAAATCCTCCCTCCAATTCATATTAAT 57.097 29.630 0.00 0.00 0.00 1.40
1430 2253 9.728100 AAAAATCCTCCCTCCAATTCATATTAA 57.272 29.630 0.00 0.00 0.00 1.40
1470 2333 5.299582 TGATTTTCGAAAACGGGGTATTC 57.700 39.130 24.68 15.66 0.00 1.75
1476 2339 4.094294 TCTGCTATGATTTTCGAAAACGGG 59.906 41.667 24.68 13.90 0.00 5.28
1479 2342 6.422776 TCCTCTGCTATGATTTTCGAAAAC 57.577 37.500 24.68 17.85 0.00 2.43
1480 2343 7.987458 AGTATCCTCTGCTATGATTTTCGAAAA 59.013 33.333 24.43 24.43 0.00 2.29
1484 2347 6.524933 CGTAGTATCCTCTGCTATGATTTTCG 59.475 42.308 0.00 0.00 32.45 3.46
1507 2376 3.975168 ACTTATTTCCTAGTGGCACGT 57.025 42.857 12.71 3.39 0.00 4.49
1508 2377 5.258456 TCTACTTATTTCCTAGTGGCACG 57.742 43.478 12.71 0.00 0.00 5.34
1531 2400 7.124298 ACAGTAAAACCTCTGCTATGAGTATGA 59.876 37.037 0.00 0.00 35.37 2.15
1532 2401 7.223582 CACAGTAAAACCTCTGCTATGAGTATG 59.776 40.741 0.00 0.00 35.37 2.39
1533 2402 7.268586 CACAGTAAAACCTCTGCTATGAGTAT 58.731 38.462 0.00 0.00 35.37 2.12
1534 2403 6.631016 CACAGTAAAACCTCTGCTATGAGTA 58.369 40.000 0.00 0.00 35.37 2.59
1535 2404 5.482908 CACAGTAAAACCTCTGCTATGAGT 58.517 41.667 0.00 0.00 35.37 3.41
1536 2405 4.331168 GCACAGTAAAACCTCTGCTATGAG 59.669 45.833 0.00 0.00 35.37 2.90
1558 2427 3.721370 AATCCCCATCCTGCGTGGC 62.721 63.158 0.00 0.00 35.35 5.01
1578 2447 3.857052 TGTTCCGTCATTGGTGTATCTC 58.143 45.455 0.00 0.00 0.00 2.75
1587 2459 4.439305 AACATCCATTGTTCCGTCATTG 57.561 40.909 0.00 0.00 45.55 2.82
1600 2472 3.343617 CAGGTTGTCCGTTAACATCCAT 58.656 45.455 6.39 0.00 40.17 3.41
1602 2474 1.467342 GCAGGTTGTCCGTTAACATCC 59.533 52.381 6.39 0.00 38.69 3.51
1688 2560 3.303406 GCAAATGCTGAGTTGTGAGTTC 58.697 45.455 0.00 0.00 38.21 3.01
1916 2795 2.416547 CCAATACGTGTCTGCCAAGAAG 59.583 50.000 0.00 0.00 33.05 2.85
1943 2822 6.935208 AGAGGAAAACCACTAATGTCTTGTAC 59.065 38.462 0.00 0.00 0.00 2.90
2039 2918 2.628657 GCCACTATGTCTATCGGTTCCT 59.371 50.000 0.00 0.00 0.00 3.36
2046 2963 1.613925 TCGCCAGCCACTATGTCTATC 59.386 52.381 0.00 0.00 0.00 2.08
2090 3008 5.692654 TCATGAATGCTCACAACACAATTTG 59.307 36.000 0.00 0.00 33.30 2.32
2190 3108 2.038952 CTCACTGTGGTTGGAGGATTGA 59.961 50.000 8.11 0.00 0.00 2.57
2206 3124 2.099263 CGGTGATACGGTGAATCTCACT 59.901 50.000 6.74 0.00 46.19 3.41
2522 3440 1.857965 TGTCATGGGACTCTCTCCTG 58.142 55.000 0.00 0.00 44.61 3.86
2582 3500 1.617947 ATCCTCGGGCAACTCCAGAC 61.618 60.000 0.00 0.00 35.19 3.51
2595 3513 0.109597 GCAAGGTTGTGCAATCCTCG 60.110 55.000 6.14 0.00 44.29 4.63
2620 3538 2.525629 TGAGGGTGGTGAAGGCGA 60.526 61.111 0.00 0.00 0.00 5.54
2634 3552 3.238108 ACATTGAACGTAGCCTCTGAG 57.762 47.619 0.00 0.00 0.00 3.35
2750 3721 2.297033 GCAGCCTTGTCCAAAAATCTGA 59.703 45.455 0.00 0.00 0.00 3.27
2784 3755 2.678324 CCTTTCTTCTCCTGTGTCGAC 58.322 52.381 9.11 9.11 0.00 4.20
2847 3818 1.907936 AGCAGCATCTTCACCTCTTCT 59.092 47.619 0.00 0.00 0.00 2.85
2971 3942 1.599518 GTGGCACGGTGAATGACCA 60.600 57.895 13.29 6.32 46.55 4.02
3018 3989 3.016736 GGGGATCAATACAAGTGTGGTG 58.983 50.000 0.00 0.00 0.00 4.17
3144 4115 2.834968 GCCAGGTAAGCCATGGCC 60.835 66.667 33.14 17.83 45.29 5.36
3269 4249 0.315544 GTCGTAGAAGAGCTCGAGCG 60.316 60.000 30.39 14.47 43.04 5.03
3271 4251 0.302288 CGGTCGTAGAAGAGCTCGAG 59.698 60.000 8.45 8.45 39.69 4.04
3513 4493 2.721797 GCATTGTCGACAAGCTACGTTG 60.722 50.000 32.19 24.21 39.47 4.10
3548 4528 7.517614 TGCTAACAAAGTGAAACATCCATAA 57.482 32.000 0.00 0.00 41.43 1.90
3549 4529 7.517614 TTGCTAACAAAGTGAAACATCCATA 57.482 32.000 0.00 0.00 41.43 2.74
3550 4530 6.403866 TTGCTAACAAAGTGAAACATCCAT 57.596 33.333 0.00 0.00 41.43 3.41
3551 4531 5.843673 TTGCTAACAAAGTGAAACATCCA 57.156 34.783 0.00 0.00 41.43 3.41
3552 4532 6.019881 GTGTTTGCTAACAAAGTGAAACATCC 60.020 38.462 15.28 0.00 46.17 3.51
3568 4548 3.134574 AGTTTGATCGGGTGTTTGCTA 57.865 42.857 0.00 0.00 0.00 3.49
3596 4576 8.971073 AGTAGAAATAATTCCACCCAAAGAATG 58.029 33.333 0.00 0.00 36.12 2.67
3627 4608 0.740149 TAAGAGGCATGCCGCAATTG 59.260 50.000 37.09 0.00 45.17 2.32
3628 4609 1.027357 CTAAGAGGCATGCCGCAATT 58.973 50.000 37.09 26.61 45.17 2.32
3629 4610 0.181114 TCTAAGAGGCATGCCGCAAT 59.819 50.000 37.09 27.82 45.17 3.56
3706 4690 6.582295 GTGTTGTGTTATTACCTGCTCATTTG 59.418 38.462 0.00 0.00 0.00 2.32
3802 4790 2.673368 GACCACCAATGATGTCGACTTC 59.327 50.000 21.20 21.20 0.00 3.01
3830 4818 0.036577 AGCTTCAGCAGTTCGCATCT 60.037 50.000 0.75 0.00 46.13 2.90
3831 4819 0.373024 GAGCTTCAGCAGTTCGCATC 59.627 55.000 0.75 0.00 46.13 3.91
3833 4821 3.957260 GAGCTTCAGCAGTTCGCA 58.043 55.556 0.75 0.00 46.13 5.10
3836 4824 1.023513 ATGCCGAGCTTCAGCAGTTC 61.024 55.000 11.24 0.00 45.16 3.01
3837 4825 0.250234 TATGCCGAGCTTCAGCAGTT 59.750 50.000 11.24 0.16 45.16 3.16
3838 4826 0.179089 CTATGCCGAGCTTCAGCAGT 60.179 55.000 11.24 4.07 45.16 4.40
3839 4827 0.103755 TCTATGCCGAGCTTCAGCAG 59.896 55.000 11.24 0.00 45.16 4.24
3840 4828 0.536724 TTCTATGCCGAGCTTCAGCA 59.463 50.000 8.46 8.46 45.16 4.41
3841 4829 0.933796 GTTCTATGCCGAGCTTCAGC 59.066 55.000 0.00 0.00 42.49 4.26
3842 4830 1.202302 TCGTTCTATGCCGAGCTTCAG 60.202 52.381 0.00 0.00 0.00 3.02
3843 4831 0.815095 TCGTTCTATGCCGAGCTTCA 59.185 50.000 0.00 0.00 0.00 3.02
3844 4832 1.482278 CTCGTTCTATGCCGAGCTTC 58.518 55.000 0.00 0.00 43.34 3.86
3845 4833 3.650409 CTCGTTCTATGCCGAGCTT 57.350 52.632 0.00 0.00 43.34 3.74
3849 4837 4.118093 TCAAATTCTCGTTCTATGCCGA 57.882 40.909 0.00 0.00 0.00 5.54
3850 4838 4.507756 TCATCAAATTCTCGTTCTATGCCG 59.492 41.667 0.00 0.00 0.00 5.69
3851 4839 5.755375 TCTCATCAAATTCTCGTTCTATGCC 59.245 40.000 0.00 0.00 0.00 4.40
3852 4840 6.699204 TCTCTCATCAAATTCTCGTTCTATGC 59.301 38.462 0.00 0.00 0.00 3.14
3853 4841 7.381948 CCTCTCTCATCAAATTCTCGTTCTATG 59.618 40.741 0.00 0.00 0.00 2.23
3854 4842 7.432869 CCTCTCTCATCAAATTCTCGTTCTAT 58.567 38.462 0.00 0.00 0.00 1.98
3855 4843 6.681616 GCCTCTCTCATCAAATTCTCGTTCTA 60.682 42.308 0.00 0.00 0.00 2.10
3856 4844 5.659463 CCTCTCTCATCAAATTCTCGTTCT 58.341 41.667 0.00 0.00 0.00 3.01
3857 4845 4.269844 GCCTCTCTCATCAAATTCTCGTTC 59.730 45.833 0.00 0.00 0.00 3.95
3858 4846 4.187694 GCCTCTCTCATCAAATTCTCGTT 58.812 43.478 0.00 0.00 0.00 3.85
3859 4847 3.736433 CGCCTCTCTCATCAAATTCTCGT 60.736 47.826 0.00 0.00 0.00 4.18
3860 4848 2.793790 CGCCTCTCTCATCAAATTCTCG 59.206 50.000 0.00 0.00 0.00 4.04
3861 4849 3.555139 CACGCCTCTCTCATCAAATTCTC 59.445 47.826 0.00 0.00 0.00 2.87
3862 4850 3.529533 CACGCCTCTCTCATCAAATTCT 58.470 45.455 0.00 0.00 0.00 2.40
3863 4851 2.031437 GCACGCCTCTCTCATCAAATTC 59.969 50.000 0.00 0.00 0.00 2.17
3864 4852 2.012673 GCACGCCTCTCTCATCAAATT 58.987 47.619 0.00 0.00 0.00 1.82
3865 4853 1.209019 AGCACGCCTCTCTCATCAAAT 59.791 47.619 0.00 0.00 0.00 2.32
3866 4854 0.610174 AGCACGCCTCTCTCATCAAA 59.390 50.000 0.00 0.00 0.00 2.69
3867 4855 0.174389 GAGCACGCCTCTCTCATCAA 59.826 55.000 0.00 0.00 37.60 2.57
3868 4856 0.967380 TGAGCACGCCTCTCTCATCA 60.967 55.000 5.44 0.00 41.35 3.07
3869 4857 0.527385 GTGAGCACGCCTCTCTCATC 60.527 60.000 5.44 0.00 41.35 2.92
3870 4858 1.253593 TGTGAGCACGCCTCTCTCAT 61.254 55.000 5.44 0.00 41.35 2.90
3871 4859 1.871126 CTGTGAGCACGCCTCTCTCA 61.871 60.000 5.44 4.98 41.35 3.27
3872 4860 1.153862 CTGTGAGCACGCCTCTCTC 60.154 63.158 5.44 1.06 41.35 3.20
3873 4861 1.467678 AACTGTGAGCACGCCTCTCT 61.468 55.000 5.44 0.00 41.35 3.10
3874 4862 1.005630 AACTGTGAGCACGCCTCTC 60.006 57.895 5.44 2.82 41.35 3.20
3875 4863 1.301244 CAACTGTGAGCACGCCTCT 60.301 57.895 5.44 0.00 41.35 3.69
3876 4864 2.959357 GCAACTGTGAGCACGCCTC 61.959 63.158 1.17 0.00 41.15 4.70
3877 4865 2.974698 GCAACTGTGAGCACGCCT 60.975 61.111 1.17 0.00 0.00 5.52
3878 4866 2.518836 GATGCAACTGTGAGCACGCC 62.519 60.000 9.89 1.04 44.49 5.68
3879 4867 1.154338 GATGCAACTGTGAGCACGC 60.154 57.895 9.89 3.26 44.49 5.34
3880 4868 1.229975 TGGATGCAACTGTGAGCACG 61.230 55.000 9.89 0.00 44.49 5.34
3881 4869 1.135489 CATGGATGCAACTGTGAGCAC 60.135 52.381 9.89 5.36 44.49 4.40
3882 4870 1.170442 CATGGATGCAACTGTGAGCA 58.830 50.000 10.07 10.07 45.92 4.26
3883 4871 1.131883 GTCATGGATGCAACTGTGAGC 59.868 52.381 0.00 0.00 0.00 4.26
3884 4872 1.395954 CGTCATGGATGCAACTGTGAG 59.604 52.381 0.00 0.00 0.00 3.51
3885 4873 1.441738 CGTCATGGATGCAACTGTGA 58.558 50.000 0.00 0.00 0.00 3.58
3886 4874 0.448990 CCGTCATGGATGCAACTGTG 59.551 55.000 0.00 0.00 42.00 3.66
3887 4875 0.324614 TCCGTCATGGATGCAACTGT 59.675 50.000 0.00 0.00 43.74 3.55
3888 4876 3.157727 TCCGTCATGGATGCAACTG 57.842 52.632 0.00 0.00 43.74 3.16
3897 4885 2.184322 CCCAGTCGTCCGTCATGG 59.816 66.667 0.00 0.00 40.09 3.66
3898 4886 2.509336 GCCCAGTCGTCCGTCATG 60.509 66.667 0.00 0.00 0.00 3.07
3899 4887 3.771160 GGCCCAGTCGTCCGTCAT 61.771 66.667 0.00 0.00 0.00 3.06
3915 4903 3.976701 AAGAAGCCCATCGCACCGG 62.977 63.158 0.00 0.00 41.38 5.28
3916 4904 2.436646 AAGAAGCCCATCGCACCG 60.437 61.111 0.00 0.00 41.38 4.94
3917 4905 2.464459 CGAAGAAGCCCATCGCACC 61.464 63.158 0.00 0.00 41.38 5.01
3918 4906 1.741770 ACGAAGAAGCCCATCGCAC 60.742 57.895 0.00 0.00 41.38 5.34
3919 4907 1.741401 CACGAAGAAGCCCATCGCA 60.741 57.895 0.00 0.00 41.38 5.10
3920 4908 2.464459 CCACGAAGAAGCCCATCGC 61.464 63.158 0.00 0.00 40.09 4.58
3921 4909 1.815421 CCCACGAAGAAGCCCATCG 60.815 63.158 0.00 0.70 42.05 3.84
3922 4910 1.452108 CCCCACGAAGAAGCCCATC 60.452 63.158 0.00 0.00 0.00 3.51
3923 4911 1.281925 ATCCCCACGAAGAAGCCCAT 61.282 55.000 0.00 0.00 0.00 4.00
3924 4912 1.923395 ATCCCCACGAAGAAGCCCA 60.923 57.895 0.00 0.00 0.00 5.36
3925 4913 1.452108 CATCCCCACGAAGAAGCCC 60.452 63.158 0.00 0.00 0.00 5.19
3926 4914 2.115291 GCATCCCCACGAAGAAGCC 61.115 63.158 0.00 0.00 0.00 4.35
3927 4915 0.178068 TAGCATCCCCACGAAGAAGC 59.822 55.000 0.00 0.00 0.00 3.86
3928 4916 1.808133 GCTAGCATCCCCACGAAGAAG 60.808 57.143 10.63 0.00 0.00 2.85
3929 4917 0.178068 GCTAGCATCCCCACGAAGAA 59.822 55.000 10.63 0.00 0.00 2.52
3930 4918 0.975556 TGCTAGCATCCCCACGAAGA 60.976 55.000 14.93 0.00 0.00 2.87
3931 4919 0.811616 GTGCTAGCATCCCCACGAAG 60.812 60.000 22.51 0.00 0.00 3.79
3932 4920 1.220749 GTGCTAGCATCCCCACGAA 59.779 57.895 22.51 0.00 0.00 3.85
3933 4921 2.900273 GTGCTAGCATCCCCACGA 59.100 61.111 22.51 0.00 0.00 4.35
3934 4922 2.586079 CGTGCTAGCATCCCCACG 60.586 66.667 22.51 14.61 43.83 4.94
3935 4923 2.203070 CCGTGCTAGCATCCCCAC 60.203 66.667 22.51 5.64 0.00 4.61
3936 4924 4.175337 GCCGTGCTAGCATCCCCA 62.175 66.667 22.51 0.00 0.00 4.96
3937 4925 3.866582 AGCCGTGCTAGCATCCCC 61.867 66.667 22.51 6.85 36.99 4.81
3938 4926 2.388890 ATCAGCCGTGCTAGCATCCC 62.389 60.000 22.51 11.69 36.40 3.85
3939 4927 0.948141 GATCAGCCGTGCTAGCATCC 60.948 60.000 22.51 12.06 36.40 3.51
3940 4928 0.033228 AGATCAGCCGTGCTAGCATC 59.967 55.000 22.51 12.36 36.40 3.91
3941 4929 0.249784 CAGATCAGCCGTGCTAGCAT 60.250 55.000 22.51 1.84 36.40 3.79
3942 4930 1.142531 CAGATCAGCCGTGCTAGCA 59.857 57.895 14.93 14.93 36.40 3.49
3943 4931 2.243264 GCAGATCAGCCGTGCTAGC 61.243 63.158 8.10 8.10 36.40 3.42
3944 4932 1.948138 CGCAGATCAGCCGTGCTAG 60.948 63.158 4.32 0.00 36.40 3.42
3945 4933 2.104928 CGCAGATCAGCCGTGCTA 59.895 61.111 4.32 0.00 36.40 3.49
3946 4934 3.713205 CTCGCAGATCAGCCGTGCT 62.713 63.158 4.32 0.00 35.37 4.40
3947 4935 2.967929 ATCTCGCAGATCAGCCGTGC 62.968 60.000 4.32 0.00 33.89 5.34
3948 4936 1.067084 ATCTCGCAGATCAGCCGTG 59.933 57.895 4.32 1.83 33.89 4.94
3949 4937 3.531283 ATCTCGCAGATCAGCCGT 58.469 55.556 4.32 0.00 33.89 5.68
3956 4944 3.620785 GCCGGGGATCTCGCAGAT 61.621 66.667 2.18 0.00 37.73 2.90
3984 4972 4.748144 CAGCAGGCCCCAACCTCC 62.748 72.222 0.00 0.00 38.26 4.30
4011 4999 4.189188 CTTCCAGCCAGCATGCGC 62.189 66.667 13.01 10.95 36.02 6.09
4012 5000 2.437180 TCTTCCAGCCAGCATGCG 60.437 61.111 13.01 7.31 36.02 4.73
4013 5001 2.758089 CGTCTTCCAGCCAGCATGC 61.758 63.158 10.51 10.51 31.97 4.06
4014 5002 2.758089 GCGTCTTCCAGCCAGCATG 61.758 63.158 0.00 0.00 0.00 4.06
4015 5003 2.437359 GCGTCTTCCAGCCAGCAT 60.437 61.111 0.00 0.00 0.00 3.79
4017 5005 4.742201 TCGCGTCTTCCAGCCAGC 62.742 66.667 5.77 0.00 0.00 4.85
4018 5006 2.507992 CTCGCGTCTTCCAGCCAG 60.508 66.667 5.77 0.00 0.00 4.85
4019 5007 4.069232 CCTCGCGTCTTCCAGCCA 62.069 66.667 5.77 0.00 0.00 4.75
4043 5031 4.540735 CATACCCGTCGCCACCCC 62.541 72.222 0.00 0.00 0.00 4.95
4044 5032 2.319890 AATCATACCCGTCGCCACCC 62.320 60.000 0.00 0.00 0.00 4.61
4045 5033 0.463116 AAATCATACCCGTCGCCACC 60.463 55.000 0.00 0.00 0.00 4.61
4046 5034 2.228138 TAAATCATACCCGTCGCCAC 57.772 50.000 0.00 0.00 0.00 5.01
4047 5035 2.828877 CTTAAATCATACCCGTCGCCA 58.171 47.619 0.00 0.00 0.00 5.69
4048 5036 1.529865 GCTTAAATCATACCCGTCGCC 59.470 52.381 0.00 0.00 0.00 5.54
4049 5037 1.191647 CGCTTAAATCATACCCGTCGC 59.808 52.381 0.00 0.00 0.00 5.19
4050 5038 2.724690 CTCGCTTAAATCATACCCGTCG 59.275 50.000 0.00 0.00 0.00 5.12
4051 5039 3.734735 GTCTCGCTTAAATCATACCCGTC 59.265 47.826 0.00 0.00 0.00 4.79
4052 5040 3.131577 TGTCTCGCTTAAATCATACCCGT 59.868 43.478 0.00 0.00 0.00 5.28
4053 5041 3.489785 GTGTCTCGCTTAAATCATACCCG 59.510 47.826 0.00 0.00 0.00 5.28
4054 5042 3.808174 GGTGTCTCGCTTAAATCATACCC 59.192 47.826 0.00 0.00 0.00 3.69
4055 5043 4.439057 TGGTGTCTCGCTTAAATCATACC 58.561 43.478 0.00 0.00 0.00 2.73
4056 5044 5.109903 ACTGGTGTCTCGCTTAAATCATAC 58.890 41.667 0.00 0.00 0.00 2.39
4077 5065 6.238374 CCAATGTTACTTTGTGTTTCTCGACT 60.238 38.462 9.56 0.00 0.00 4.18
4080 5068 4.675114 GCCAATGTTACTTTGTGTTTCTCG 59.325 41.667 9.56 0.00 0.00 4.04
4087 5075 1.000827 TGCCGCCAATGTTACTTTGTG 60.001 47.619 9.56 3.62 0.00 3.33
4110 5098 6.451393 AGGAGATCTTTGATGTAACTATCGC 58.549 40.000 0.00 0.00 0.00 4.58
4111 5099 8.356657 AGAAGGAGATCTTTGATGTAACTATCG 58.643 37.037 0.00 0.00 35.50 2.92
4137 5125 2.121948 ACTATCCTTGCATGGAGCTCA 58.878 47.619 24.03 10.15 45.94 4.26
4139 5127 4.778213 TTAACTATCCTTGCATGGAGCT 57.222 40.909 24.03 12.65 45.94 4.09
4207 5195 0.250901 GAGGCAGTGAATGGGTGTGT 60.251 55.000 0.00 0.00 0.00 3.72
4212 5200 1.077212 CCCTGAGGCAGTGAATGGG 60.077 63.158 0.00 0.00 0.00 4.00
4213 5201 1.077212 CCCCTGAGGCAGTGAATGG 60.077 63.158 0.00 0.00 0.00 3.16
4214 5202 1.077212 CCCCCTGAGGCAGTGAATG 60.077 63.158 0.00 0.00 0.00 2.67
4215 5203 3.419858 CCCCCTGAGGCAGTGAAT 58.580 61.111 0.00 0.00 0.00 2.57
4257 5328 1.447489 CGGCACAGGAGCTTGAGAG 60.447 63.158 0.00 0.00 34.17 3.20
4258 5329 2.659016 CGGCACAGGAGCTTGAGA 59.341 61.111 0.00 0.00 34.17 3.27
4260 5331 4.704833 GCCGGCACAGGAGCTTGA 62.705 66.667 24.80 0.00 34.17 3.02
4271 5342 4.087892 GAGCAGAGGAAGCCGGCA 62.088 66.667 31.54 0.00 0.00 5.69
4352 5427 0.105039 ATGGAAGGAATCGCGGAGAC 59.895 55.000 6.13 0.00 0.00 3.36
4474 5609 3.685214 CTGGAGGAGAACGTCGCGG 62.685 68.421 6.13 0.00 0.00 6.46
4523 5658 3.323115 CCGAAACCCTAGGTAGGATAACC 59.677 52.174 8.29 0.00 46.63 2.85
4524 5659 3.323115 CCCGAAACCCTAGGTAGGATAAC 59.677 52.174 8.29 0.00 46.63 1.89
4531 5672 1.556451 GAAAGCCCGAAACCCTAGGTA 59.444 52.381 8.29 0.00 33.12 3.08
4561 5702 1.738099 GCGAGCACACACCAGGTAG 60.738 63.158 0.00 0.00 0.00 3.18
4562 5703 2.342279 GCGAGCACACACCAGGTA 59.658 61.111 0.00 0.00 0.00 3.08
4563 5704 4.969196 CGCGAGCACACACCAGGT 62.969 66.667 0.00 0.00 0.00 4.00
4588 5729 0.179062 GCTCTCATCCGCCTGACATT 60.179 55.000 0.00 0.00 0.00 2.71
4589 5730 1.332889 TGCTCTCATCCGCCTGACAT 61.333 55.000 0.00 0.00 0.00 3.06
4590 5731 1.953231 CTGCTCTCATCCGCCTGACA 61.953 60.000 0.00 0.00 0.00 3.58
4591 5732 1.227205 CTGCTCTCATCCGCCTGAC 60.227 63.158 0.00 0.00 0.00 3.51
4592 5733 2.429767 CCTGCTCTCATCCGCCTGA 61.430 63.158 0.00 0.00 0.00 3.86
4606 5747 2.914289 CCTCCCACATCCTCCTGC 59.086 66.667 0.00 0.00 0.00 4.85
4609 5750 2.308722 TTGGCCTCCCACATCCTCC 61.309 63.158 3.32 0.00 41.97 4.30


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.