Multiple sequence alignment - TraesCS2D01G007600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2D01G007600 chr2D 100.000 3560 0 0 1 3560 4105419 4101860 0.000000e+00 6575.0
1 TraesCS2D01G007600 chr3B 85.793 1626 182 37 1037 2639 574001715 574000116 0.000000e+00 1677.0
2 TraesCS2D01G007600 chr3B 85.294 102 10 3 2878 2977 16697877 16697779 2.260000e-17 100.0
3 TraesCS2D01G007600 chr3D 86.018 1552 167 28 1037 2559 438434797 438436327 0.000000e+00 1618.0
4 TraesCS2D01G007600 chr3D 79.363 1444 250 38 1154 2564 438438236 438439664 0.000000e+00 972.0
5 TraesCS2D01G007600 chr3D 84.231 780 93 21 1 778 16897174 16896423 0.000000e+00 732.0
6 TraesCS2D01G007600 chr3D 84.444 180 23 4 604 779 118199031 118198853 4.730000e-39 172.0
7 TraesCS2D01G007600 chr3A 84.524 1428 178 28 1229 2630 576682463 576683873 0.000000e+00 1373.0
8 TraesCS2D01G007600 chr3A 78.969 1455 253 42 1154 2566 576685940 576687383 0.000000e+00 942.0
9 TraesCS2D01G007600 chr2A 86.092 1021 113 20 1068 2064 6998014 6999029 0.000000e+00 1072.0
10 TraesCS2D01G007600 chr2A 91.095 539 39 5 2086 2624 7000409 7000938 0.000000e+00 721.0
11 TraesCS2D01G007600 chr2A 84.642 573 74 12 1687 2247 1588613 1589183 3.100000e-155 558.0
12 TraesCS2D01G007600 chr2A 87.368 95 10 1 2878 2972 539328046 539327954 1.350000e-19 108.0
13 TraesCS2D01G007600 chr2B 83.507 1055 131 19 1157 2197 518917 517892 0.000000e+00 944.0
14 TraesCS2D01G007600 chr2B 89.520 687 62 7 2877 3560 7102648 7103327 0.000000e+00 861.0
15 TraesCS2D01G007600 chr2B 89.520 687 62 7 2877 3560 454747658 454746979 0.000000e+00 861.0
16 TraesCS2D01G007600 chr2B 89.229 687 64 7 2877 3560 7060935 7061614 0.000000e+00 850.0
17 TraesCS2D01G007600 chr2B 88.937 687 65 8 2877 3560 7022265 7022943 0.000000e+00 837.0
18 TraesCS2D01G007600 chr2B 89.895 287 23 4 2578 2861 7021827 7022110 7.260000e-97 364.0
19 TraesCS2D01G007600 chr2B 89.547 287 24 4 2578 2861 7060497 7060780 3.380000e-95 359.0
20 TraesCS2D01G007600 chr2B 89.547 287 24 4 2578 2861 7102210 7102493 3.380000e-95 359.0
21 TraesCS2D01G007600 chr2B 89.928 278 22 4 2587 2861 454748001 454747727 1.570000e-93 353.0
22 TraesCS2D01G007600 chr2B 87.952 83 7 3 823 905 7021654 7021733 1.050000e-15 95.3
23 TraesCS2D01G007600 chr2B 89.474 76 7 1 830 905 454748181 454748107 1.050000e-15 95.3
24 TraesCS2D01G007600 chr2B 87.805 82 7 3 823 904 7060324 7060402 3.780000e-15 93.5
25 TraesCS2D01G007600 chr2B 86.747 83 8 3 823 905 7102037 7102116 4.900000e-14 89.8
26 TraesCS2D01G007600 chr1A 84.872 780 97 13 1 778 84049631 84048871 0.000000e+00 767.0
27 TraesCS2D01G007600 chr1B 84.655 782 96 15 1 778 616604171 616604932 0.000000e+00 758.0
28 TraesCS2D01G007600 chr7A 84.487 780 99 16 1 778 721027770 721028529 0.000000e+00 750.0
29 TraesCS2D01G007600 chr7A 84.109 774 101 11 1 770 540000038 539999283 0.000000e+00 728.0
30 TraesCS2D01G007600 chr7A 81.496 789 114 26 1 776 571374703 571373934 1.400000e-173 619.0
31 TraesCS2D01G007600 chr7A 82.110 218 32 5 3349 3560 683010837 683011053 2.820000e-41 180.0
32 TraesCS2D01G007600 chr4D 83.974 780 92 19 1 778 466735431 466736179 0.000000e+00 717.0
33 TraesCS2D01G007600 chr4D 81.455 426 63 5 3140 3560 69794946 69795360 5.690000e-88 335.0
34 TraesCS2D01G007600 chr6D 83.632 782 102 17 1 778 447889466 447890225 0.000000e+00 712.0
35 TraesCS2D01G007600 chr6D 80.140 428 65 11 3126 3546 66133720 66133306 5.780000e-78 302.0
36 TraesCS2D01G007600 chr5B 83.592 774 102 18 1 769 271914725 271915478 0.000000e+00 702.0
37 TraesCS2D01G007600 chr5B 80.952 441 69 11 3126 3560 241855410 241854979 5.690000e-88 335.0
38 TraesCS2D01G007600 chr1D 83.794 759 101 12 1 757 324725568 324724830 0.000000e+00 701.0
39 TraesCS2D01G007600 chr1D 87.027 555 68 3 1 555 59819274 59819824 1.090000e-174 623.0
40 TraesCS2D01G007600 chr1D 87.368 95 10 1 2878 2972 314014330 314014422 1.350000e-19 108.0
41 TraesCS2D01G007600 chr7B 83.248 782 107 17 1 778 720821151 720821912 0.000000e+00 697.0
42 TraesCS2D01G007600 chr7B 80.455 440 67 12 3127 3560 332245721 332246147 5.740000e-83 318.0
43 TraesCS2D01G007600 chr7B 85.106 188 19 8 595 775 11533399 11533214 2.180000e-42 183.0
44 TraesCS2D01G007600 chr7D 81.612 794 119 21 1 785 406851327 406852102 1.800000e-177 632.0
45 TraesCS2D01G007600 chr7D 81.589 755 113 18 1 746 631841026 631840289 5.090000e-168 601.0
46 TraesCS2D01G007600 chr7D 85.789 190 23 4 3139 3325 604901949 604901761 7.800000e-47 198.0
47 TraesCS2D01G007600 chr7D 86.538 104 11 2 2878 2981 454079316 454079416 1.040000e-20 111.0
48 TraesCS2D01G007600 chr4B 80.641 780 116 28 1 766 43763485 43764243 3.990000e-159 571.0
49 TraesCS2D01G007600 chr4B 84.282 369 48 6 3148 3512 346029579 346029941 5.650000e-93 351.0
50 TraesCS2D01G007600 chrUn 92.469 239 16 2 1913 2149 196957567 196957329 1.220000e-89 340.0
51 TraesCS2D01G007600 chrUn 88.288 222 17 5 2403 2624 196957311 196957099 1.270000e-64 257.0
52 TraesCS2D01G007600 chrUn 88.288 222 17 5 2403 2624 442144063 442143851 1.270000e-64 257.0
53 TraesCS2D01G007600 chrUn 88.421 95 7 2 2878 2972 96478315 96478225 1.040000e-20 111.0
54 TraesCS2D01G007600 chr5D 81.818 363 49 8 3189 3546 135652490 135652840 4.500000e-74 289.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2D01G007600 chr2D 4101860 4105419 3559 True 6575.000000 6575 100.000000 1 3560 1 chr2D.!!$R1 3559
1 TraesCS2D01G007600 chr3B 574000116 574001715 1599 True 1677.000000 1677 85.793000 1037 2639 1 chr3B.!!$R2 1602
2 TraesCS2D01G007600 chr3D 438434797 438439664 4867 False 1295.000000 1618 82.690500 1037 2564 2 chr3D.!!$F1 1527
3 TraesCS2D01G007600 chr3D 16896423 16897174 751 True 732.000000 732 84.231000 1 778 1 chr3D.!!$R1 777
4 TraesCS2D01G007600 chr3A 576682463 576687383 4920 False 1157.500000 1373 81.746500 1154 2630 2 chr3A.!!$F1 1476
5 TraesCS2D01G007600 chr2A 6998014 7000938 2924 False 896.500000 1072 88.593500 1068 2624 2 chr2A.!!$F2 1556
6 TraesCS2D01G007600 chr2A 1588613 1589183 570 False 558.000000 558 84.642000 1687 2247 1 chr2A.!!$F1 560
7 TraesCS2D01G007600 chr2B 517892 518917 1025 True 944.000000 944 83.507000 1157 2197 1 chr2B.!!$R1 1040
8 TraesCS2D01G007600 chr2B 7102037 7103327 1290 False 436.600000 861 88.604667 823 3560 3 chr2B.!!$F3 2737
9 TraesCS2D01G007600 chr2B 454746979 454748181 1202 True 436.433333 861 89.640667 830 3560 3 chr2B.!!$R2 2730
10 TraesCS2D01G007600 chr2B 7060324 7061614 1290 False 434.166667 850 88.860333 823 3560 3 chr2B.!!$F2 2737
11 TraesCS2D01G007600 chr2B 7021654 7022943 1289 False 432.100000 837 88.928000 823 3560 3 chr2B.!!$F1 2737
12 TraesCS2D01G007600 chr1A 84048871 84049631 760 True 767.000000 767 84.872000 1 778 1 chr1A.!!$R1 777
13 TraesCS2D01G007600 chr1B 616604171 616604932 761 False 758.000000 758 84.655000 1 778 1 chr1B.!!$F1 777
14 TraesCS2D01G007600 chr7A 721027770 721028529 759 False 750.000000 750 84.487000 1 778 1 chr7A.!!$F2 777
15 TraesCS2D01G007600 chr7A 539999283 540000038 755 True 728.000000 728 84.109000 1 770 1 chr7A.!!$R1 769
16 TraesCS2D01G007600 chr7A 571373934 571374703 769 True 619.000000 619 81.496000 1 776 1 chr7A.!!$R2 775
17 TraesCS2D01G007600 chr4D 466735431 466736179 748 False 717.000000 717 83.974000 1 778 1 chr4D.!!$F2 777
18 TraesCS2D01G007600 chr6D 447889466 447890225 759 False 712.000000 712 83.632000 1 778 1 chr6D.!!$F1 777
19 TraesCS2D01G007600 chr5B 271914725 271915478 753 False 702.000000 702 83.592000 1 769 1 chr5B.!!$F1 768
20 TraesCS2D01G007600 chr1D 324724830 324725568 738 True 701.000000 701 83.794000 1 757 1 chr1D.!!$R1 756
21 TraesCS2D01G007600 chr1D 59819274 59819824 550 False 623.000000 623 87.027000 1 555 1 chr1D.!!$F1 554
22 TraesCS2D01G007600 chr7B 720821151 720821912 761 False 697.000000 697 83.248000 1 778 1 chr7B.!!$F2 777
23 TraesCS2D01G007600 chr7D 406851327 406852102 775 False 632.000000 632 81.612000 1 785 1 chr7D.!!$F1 784
24 TraesCS2D01G007600 chr7D 631840289 631841026 737 True 601.000000 601 81.589000 1 746 1 chr7D.!!$R2 745
25 TraesCS2D01G007600 chr4B 43763485 43764243 758 False 571.000000 571 80.641000 1 766 1 chr4B.!!$F1 765

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
977 1007 0.108520 TCCGATAGAAACGCCGCTTT 60.109 50.0 0.0 0.0 39.76 3.51 F
1518 1551 0.102844 TCGTCCGTTTCGAGGTTGTT 59.897 50.0 0.0 0.0 33.38 2.83 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2107 3526 0.447801 GCGTGGAGGTAGTGCATTTG 59.552 55.0 0.00 0.00 0.0 2.32 R
3146 4717 0.171231 CATGTCGACGAGGCTCAAGA 59.829 55.0 15.95 7.37 0.0 3.02 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
82 83 1.054348 CAAACTGCAACGACGATGCG 61.054 55.000 22.59 18.92 46.76 4.73
107 108 5.007626 TCAACAAGGAAACGACATCAAAGAG 59.992 40.000 0.00 0.00 0.00 2.85
160 161 2.634982 GATTTTCATCGGCAGTTGCA 57.365 45.000 6.43 0.00 44.36 4.08
233 234 2.426522 CAAAACGATGCCCTGAAGAGA 58.573 47.619 0.00 0.00 0.00 3.10
236 237 1.786937 ACGATGCCCTGAAGAGAGAT 58.213 50.000 0.00 0.00 0.00 2.75
298 299 3.824815 GGGTTTCCCCCGGAGTTA 58.175 61.111 0.73 0.00 45.80 2.24
309 310 2.813908 GGAGTTACCCGCGCTGTG 60.814 66.667 5.56 0.00 0.00 3.66
410 417 2.819984 GATTCCAAGCCCACGCCTGA 62.820 60.000 0.00 0.00 34.57 3.86
420 438 2.364842 ACGCCTGAGCCCAGATCT 60.365 61.111 0.00 0.00 43.02 2.75
421 439 1.075970 ACGCCTGAGCCCAGATCTA 60.076 57.895 0.00 0.00 43.02 1.98
497 516 4.697756 CCCGACCTTGAAGCCGCA 62.698 66.667 0.00 0.00 0.00 5.69
568 589 4.767255 GGCCACACGAGCAGGAGG 62.767 72.222 0.00 0.00 0.00 4.30
570 591 4.767255 CCACACGAGCAGGAGGGC 62.767 72.222 0.00 0.00 0.00 5.19
571 592 4.767255 CACACGAGCAGGAGGGCC 62.767 72.222 0.00 0.00 0.00 5.80
573 594 4.154347 CACGAGCAGGAGGGCCTC 62.154 72.222 25.80 25.80 44.80 4.70
576 597 3.535962 GAGCAGGAGGGCCTCGAG 61.536 72.222 26.54 21.24 44.80 4.04
577 598 4.390556 AGCAGGAGGGCCTCGAGT 62.391 66.667 26.54 11.49 44.80 4.18
578 599 3.844090 GCAGGAGGGCCTCGAGTC 61.844 72.222 26.54 13.15 44.80 3.36
579 600 3.151022 CAGGAGGGCCTCGAGTCC 61.151 72.222 26.54 13.97 44.80 3.85
580 601 4.467107 AGGAGGGCCTCGAGTCCC 62.467 72.222 24.29 24.29 42.19 4.46
713 737 2.015726 GGAGGAGGAGGAGAGGGGA 61.016 68.421 0.00 0.00 0.00 4.81
718 746 2.041265 GGAGGAGAGGGGAAGGCA 59.959 66.667 0.00 0.00 0.00 4.75
740 768 4.191015 GACGGGATCTTGGGGCCC 62.191 72.222 18.17 18.17 38.53 5.80
789 819 3.647771 GGGAGGGTGAGGGCGTTT 61.648 66.667 0.00 0.00 0.00 3.60
790 820 2.434774 GGAGGGTGAGGGCGTTTT 59.565 61.111 0.00 0.00 0.00 2.43
791 821 1.674651 GGAGGGTGAGGGCGTTTTC 60.675 63.158 0.00 0.00 0.00 2.29
793 823 2.281276 GGGTGAGGGCGTTTTCGT 60.281 61.111 0.00 0.00 46.03 3.85
794 824 2.613506 GGGTGAGGGCGTTTTCGTG 61.614 63.158 0.00 0.00 46.03 4.35
795 825 1.890510 GGTGAGGGCGTTTTCGTGT 60.891 57.895 0.00 0.00 46.03 4.49
796 826 1.278637 GTGAGGGCGTTTTCGTGTG 59.721 57.895 0.00 0.00 46.03 3.82
797 827 2.251371 GAGGGCGTTTTCGTGTGC 59.749 61.111 0.00 0.00 46.03 4.57
798 828 2.203153 AGGGCGTTTTCGTGTGCT 60.203 55.556 0.00 0.00 46.03 4.40
799 829 1.782028 GAGGGCGTTTTCGTGTGCTT 61.782 55.000 0.00 0.00 46.03 3.91
800 830 0.533308 AGGGCGTTTTCGTGTGCTTA 60.533 50.000 0.00 0.00 46.03 3.09
801 831 0.385098 GGGCGTTTTCGTGTGCTTAC 60.385 55.000 0.00 0.00 46.03 2.34
802 832 0.584876 GGCGTTTTCGTGTGCTTACT 59.415 50.000 0.00 0.00 46.03 2.24
803 833 1.003223 GGCGTTTTCGTGTGCTTACTT 60.003 47.619 0.00 0.00 46.03 2.24
804 834 2.540157 GGCGTTTTCGTGTGCTTACTTT 60.540 45.455 0.00 0.00 46.03 2.66
805 835 3.103007 GCGTTTTCGTGTGCTTACTTTT 58.897 40.909 0.00 0.00 46.03 2.27
806 836 4.273274 GCGTTTTCGTGTGCTTACTTTTA 58.727 39.130 0.00 0.00 46.03 1.52
807 837 4.907582 GCGTTTTCGTGTGCTTACTTTTAT 59.092 37.500 0.00 0.00 46.03 1.40
808 838 6.072733 GCGTTTTCGTGTGCTTACTTTTATA 58.927 36.000 0.00 0.00 46.03 0.98
809 839 6.574462 GCGTTTTCGTGTGCTTACTTTTATAA 59.426 34.615 0.00 0.00 46.03 0.98
810 840 7.269724 GCGTTTTCGTGTGCTTACTTTTATAAT 59.730 33.333 0.00 0.00 46.03 1.28
811 841 8.773136 CGTTTTCGTGTGCTTACTTTTATAATC 58.227 33.333 0.00 0.00 38.65 1.75
812 842 9.821662 GTTTTCGTGTGCTTACTTTTATAATCT 57.178 29.630 0.00 0.00 0.00 2.40
815 845 9.865321 TTCGTGTGCTTACTTTTATAATCTACT 57.135 29.630 0.00 0.00 0.00 2.57
816 846 9.297586 TCGTGTGCTTACTTTTATAATCTACTG 57.702 33.333 0.00 0.00 0.00 2.74
817 847 8.056571 CGTGTGCTTACTTTTATAATCTACTGC 58.943 37.037 0.00 0.00 0.00 4.40
818 848 8.056571 GTGTGCTTACTTTTATAATCTACTGCG 58.943 37.037 0.00 0.00 0.00 5.18
819 849 7.977293 TGTGCTTACTTTTATAATCTACTGCGA 59.023 33.333 0.00 0.00 0.00 5.10
820 850 8.979574 GTGCTTACTTTTATAATCTACTGCGAT 58.020 33.333 0.00 0.00 0.00 4.58
827 857 9.793245 CTTTTATAATCTACTGCGATAAAACGG 57.207 33.333 0.00 0.00 31.82 4.44
828 858 9.531942 TTTTATAATCTACTGCGATAAAACGGA 57.468 29.630 0.00 0.00 30.73 4.69
878 908 7.066284 GGATCAAGCAAATACTTGTATCACACT 59.934 37.037 4.37 0.00 45.86 3.55
879 909 7.744087 TCAAGCAAATACTTGTATCACACTT 57.256 32.000 4.37 0.00 45.86 3.16
882 912 6.237901 AGCAAATACTTGTATCACACTTGGA 58.762 36.000 0.00 0.00 34.79 3.53
885 915 7.865385 GCAAATACTTGTATCACACTTGGAAAA 59.135 33.333 0.00 0.00 34.79 2.29
888 918 6.619801 ACTTGTATCACACTTGGAAAAGTC 57.380 37.500 0.00 0.00 0.00 3.01
893 923 3.340034 TCACACTTGGAAAAGTCGTTGT 58.660 40.909 0.00 0.00 0.00 3.32
895 925 2.159435 ACACTTGGAAAAGTCGTTGTGC 60.159 45.455 0.00 0.00 0.00 4.57
900 930 1.466855 GAAAAGTCGTTGTGCAGTGC 58.533 50.000 8.58 8.58 0.00 4.40
901 931 1.064060 GAAAAGTCGTTGTGCAGTGCT 59.936 47.619 17.60 0.00 0.00 4.40
902 932 0.378257 AAAGTCGTTGTGCAGTGCTG 59.622 50.000 17.60 1.26 0.00 4.41
903 933 0.744414 AAGTCGTTGTGCAGTGCTGT 60.744 50.000 17.60 0.00 0.00 4.40
904 934 1.154205 AGTCGTTGTGCAGTGCTGTC 61.154 55.000 17.60 7.56 0.00 3.51
905 935 2.237066 TCGTTGTGCAGTGCTGTCG 61.237 57.895 17.60 14.89 0.00 4.35
906 936 2.051882 GTTGTGCAGTGCTGTCGC 60.052 61.111 17.60 2.27 0.00 5.19
907 937 3.279116 TTGTGCAGTGCTGTCGCC 61.279 61.111 17.60 0.00 34.43 5.54
912 942 3.114616 CAGTGCTGTCGCCGGAAG 61.115 66.667 5.05 0.00 34.43 3.46
913 943 3.616721 AGTGCTGTCGCCGGAAGT 61.617 61.111 5.05 0.00 34.43 3.01
914 944 3.414700 GTGCTGTCGCCGGAAGTG 61.415 66.667 5.05 0.00 34.43 3.16
915 945 3.611674 TGCTGTCGCCGGAAGTGA 61.612 61.111 5.05 0.00 34.43 3.41
916 946 2.357034 GCTGTCGCCGGAAGTGAA 60.357 61.111 5.05 0.00 36.56 3.18
917 947 2.383527 GCTGTCGCCGGAAGTGAAG 61.384 63.158 5.05 0.00 36.56 3.02
918 948 1.738099 CTGTCGCCGGAAGTGAAGG 60.738 63.158 5.05 0.00 36.56 3.46
919 949 3.119096 GTCGCCGGAAGTGAAGGC 61.119 66.667 5.05 0.00 46.88 4.35
922 952 3.579685 GCCGGAAGTGAAGGCTTC 58.420 61.111 20.27 20.27 46.83 3.86
926 956 4.303257 GAAGTGAAGGCTTCCCGG 57.697 61.111 23.68 0.00 39.03 5.73
927 957 1.375326 GAAGTGAAGGCTTCCCGGT 59.625 57.895 23.68 6.72 39.03 5.28
928 958 0.955919 GAAGTGAAGGCTTCCCGGTG 60.956 60.000 23.68 0.00 39.03 4.94
929 959 2.359975 GTGAAGGCTTCCCGGTGG 60.360 66.667 23.68 0.00 35.76 4.61
930 960 4.344865 TGAAGGCTTCCCGGTGGC 62.345 66.667 23.68 2.43 35.76 5.01
936 966 4.636435 CTTCCCGGTGGCCAACGT 62.636 66.667 38.95 0.00 40.49 3.99
937 967 4.939368 TTCCCGGTGGCCAACGTG 62.939 66.667 38.95 30.64 40.49 4.49
941 971 4.920112 CGGTGGCCAACGTGGTGA 62.920 66.667 34.99 0.00 40.46 4.02
942 972 3.284449 GGTGGCCAACGTGGTGAC 61.284 66.667 7.24 0.00 40.46 3.67
943 973 2.203153 GTGGCCAACGTGGTGACT 60.203 61.111 7.24 0.00 40.46 3.41
944 974 1.822186 GTGGCCAACGTGGTGACTT 60.822 57.895 7.24 0.00 40.46 3.01
945 975 1.077357 TGGCCAACGTGGTGACTTT 60.077 52.632 0.61 0.00 40.46 2.66
946 976 1.358759 GGCCAACGTGGTGACTTTG 59.641 57.895 0.00 0.00 40.46 2.77
948 978 1.358759 CCAACGTGGTGACTTTGGC 59.641 57.895 0.00 0.00 42.66 4.52
949 979 1.101049 CCAACGTGGTGACTTTGGCT 61.101 55.000 0.00 0.00 42.66 4.75
950 980 1.588674 CAACGTGGTGACTTTGGCTA 58.411 50.000 0.00 0.00 29.69 3.93
951 981 1.531149 CAACGTGGTGACTTTGGCTAG 59.469 52.381 0.00 0.00 29.69 3.42
952 982 0.602905 ACGTGGTGACTTTGGCTAGC 60.603 55.000 6.04 6.04 0.00 3.42
953 983 1.626654 CGTGGTGACTTTGGCTAGCG 61.627 60.000 9.00 0.00 0.00 4.26
954 984 1.671054 TGGTGACTTTGGCTAGCGC 60.671 57.895 9.00 0.00 0.00 5.92
955 985 2.740714 GGTGACTTTGGCTAGCGCG 61.741 63.158 9.00 0.00 36.88 6.86
956 986 1.736645 GTGACTTTGGCTAGCGCGA 60.737 57.895 12.10 0.00 36.88 5.87
957 987 1.736645 TGACTTTGGCTAGCGCGAC 60.737 57.895 12.10 0.04 36.88 5.19
958 988 1.446272 GACTTTGGCTAGCGCGACT 60.446 57.895 12.10 9.58 36.88 4.18
959 989 1.414527 GACTTTGGCTAGCGCGACTC 61.415 60.000 12.10 0.00 36.88 3.36
960 990 2.125673 TTTGGCTAGCGCGACTCC 60.126 61.111 12.10 5.11 36.88 3.85
961 991 3.982372 TTTGGCTAGCGCGACTCCG 62.982 63.158 12.10 2.96 36.88 4.63
963 993 3.967335 GGCTAGCGCGACTCCGAT 61.967 66.667 12.10 0.00 38.22 4.18
964 994 2.614446 GGCTAGCGCGACTCCGATA 61.614 63.158 12.10 0.00 38.22 2.92
965 995 1.154376 GCTAGCGCGACTCCGATAG 60.154 63.158 12.10 1.54 46.57 2.08
966 996 1.566882 GCTAGCGCGACTCCGATAGA 61.567 60.000 12.10 0.00 46.73 1.98
967 997 0.866427 CTAGCGCGACTCCGATAGAA 59.134 55.000 12.10 0.00 46.73 2.10
968 998 1.263484 CTAGCGCGACTCCGATAGAAA 59.737 52.381 12.10 0.00 46.73 2.52
969 999 0.248539 AGCGCGACTCCGATAGAAAC 60.249 55.000 12.10 0.00 38.22 2.78
970 1000 1.529883 GCGCGACTCCGATAGAAACG 61.530 60.000 12.10 0.00 38.22 3.60
971 1001 1.529883 CGCGACTCCGATAGAAACGC 61.530 60.000 0.00 0.00 39.87 4.84
972 1002 1.207377 GCGACTCCGATAGAAACGCC 61.207 60.000 0.00 0.00 38.60 5.68
973 1003 0.928908 CGACTCCGATAGAAACGCCG 60.929 60.000 0.00 0.00 38.22 6.46
974 1004 1.207377 GACTCCGATAGAAACGCCGC 61.207 60.000 0.00 0.00 39.76 6.53
975 1005 1.065928 CTCCGATAGAAACGCCGCT 59.934 57.895 0.00 0.00 39.76 5.52
976 1006 0.527817 CTCCGATAGAAACGCCGCTT 60.528 55.000 0.00 0.00 39.76 4.68
977 1007 0.108520 TCCGATAGAAACGCCGCTTT 60.109 50.000 0.00 0.00 39.76 3.51
978 1008 0.725117 CCGATAGAAACGCCGCTTTT 59.275 50.000 0.00 0.00 39.76 2.27
979 1009 1.529010 CCGATAGAAACGCCGCTTTTG 60.529 52.381 0.00 0.00 39.76 2.44
980 1010 1.535088 GATAGAAACGCCGCTTTTGC 58.465 50.000 0.00 0.00 43.23 3.68
981 1011 0.170339 ATAGAAACGCCGCTTTTGCC 59.830 50.000 0.00 0.00 43.93 4.52
982 1012 0.887387 TAGAAACGCCGCTTTTGCCT 60.887 50.000 0.00 0.00 43.93 4.75
983 1013 1.299850 GAAACGCCGCTTTTGCCTT 60.300 52.632 0.00 0.00 43.93 4.35
984 1014 0.874175 GAAACGCCGCTTTTGCCTTT 60.874 50.000 0.00 0.00 43.93 3.11
985 1015 0.386113 AAACGCCGCTTTTGCCTTTA 59.614 45.000 0.00 0.00 43.93 1.85
986 1016 0.386113 AACGCCGCTTTTGCCTTTAA 59.614 45.000 0.00 0.00 43.93 1.52
987 1017 0.386113 ACGCCGCTTTTGCCTTTAAA 59.614 45.000 0.00 0.00 43.93 1.52
988 1018 1.000394 ACGCCGCTTTTGCCTTTAAAT 60.000 42.857 0.00 0.00 43.93 1.40
989 1019 2.065512 CGCCGCTTTTGCCTTTAAATT 58.934 42.857 0.00 0.00 43.93 1.82
990 1020 3.246619 CGCCGCTTTTGCCTTTAAATTA 58.753 40.909 0.00 0.00 43.93 1.40
991 1021 3.303229 CGCCGCTTTTGCCTTTAAATTAG 59.697 43.478 0.00 0.00 43.93 1.73
992 1022 3.062099 GCCGCTTTTGCCTTTAAATTAGC 59.938 43.478 0.00 0.00 43.93 3.09
993 1023 3.616821 CCGCTTTTGCCTTTAAATTAGCC 59.383 43.478 0.00 0.00 43.93 3.93
994 1024 3.303229 CGCTTTTGCCTTTAAATTAGCCG 59.697 43.478 0.00 0.00 43.93 5.52
995 1025 3.062099 GCTTTTGCCTTTAAATTAGCCGC 59.938 43.478 0.00 0.00 40.15 6.53
996 1026 3.944055 TTTGCCTTTAAATTAGCCGCA 57.056 38.095 0.00 0.00 0.00 5.69
997 1027 4.464069 TTTGCCTTTAAATTAGCCGCAT 57.536 36.364 0.00 0.00 0.00 4.73
998 1028 3.435105 TGCCTTTAAATTAGCCGCATG 57.565 42.857 0.00 0.00 0.00 4.06
999 1029 2.127251 GCCTTTAAATTAGCCGCATGC 58.873 47.619 7.91 7.91 41.71 4.06
1000 1030 2.481104 GCCTTTAAATTAGCCGCATGCA 60.481 45.455 19.57 0.00 44.83 3.96
1001 1031 3.799917 GCCTTTAAATTAGCCGCATGCAT 60.800 43.478 19.57 5.35 44.83 3.96
1002 1032 3.737266 CCTTTAAATTAGCCGCATGCATG 59.263 43.478 22.70 22.70 44.83 4.06
1012 1042 3.893572 CATGCATGCACCACTCGA 58.106 55.556 25.37 0.00 0.00 4.04
1013 1043 2.400911 CATGCATGCACCACTCGAT 58.599 52.632 25.37 0.38 0.00 3.59
1014 1044 0.306840 CATGCATGCACCACTCGATC 59.693 55.000 25.37 0.00 0.00 3.69
1015 1045 1.156034 ATGCATGCACCACTCGATCG 61.156 55.000 25.37 9.36 0.00 3.69
1016 1046 3.009140 CATGCACCACTCGATCGC 58.991 61.111 11.09 0.00 0.00 4.58
1017 1047 2.583319 ATGCACCACTCGATCGCG 60.583 61.111 11.09 6.95 39.35 5.87
1020 1050 3.545481 CACCACTCGATCGCGCAC 61.545 66.667 11.09 0.00 37.46 5.34
1021 1051 4.796231 ACCACTCGATCGCGCACC 62.796 66.667 11.09 0.00 37.46 5.01
1022 1052 4.794439 CCACTCGATCGCGCACCA 62.794 66.667 11.09 0.00 37.46 4.17
1023 1053 2.809174 CACTCGATCGCGCACCAA 60.809 61.111 11.09 0.00 37.46 3.67
1024 1054 2.809601 ACTCGATCGCGCACCAAC 60.810 61.111 11.09 0.00 37.46 3.77
1025 1055 3.902063 CTCGATCGCGCACCAACG 61.902 66.667 11.09 5.66 37.46 4.10
1026 1056 4.407694 TCGATCGCGCACCAACGA 62.408 61.111 11.09 8.12 43.33 3.85
1027 1057 3.474904 CGATCGCGCACCAACGAA 61.475 61.111 8.75 0.00 42.31 3.85
1028 1058 2.095843 GATCGCGCACCAACGAAC 59.904 61.111 8.75 0.00 42.31 3.95
1029 1059 2.357034 ATCGCGCACCAACGAACT 60.357 55.556 8.75 0.00 42.31 3.01
1030 1060 1.074319 GATCGCGCACCAACGAACTA 61.074 55.000 8.75 0.00 42.31 2.24
1031 1061 1.076533 ATCGCGCACCAACGAACTAG 61.077 55.000 8.75 0.00 42.31 2.57
1032 1062 2.726691 CGCGCACCAACGAACTAGG 61.727 63.158 8.75 0.00 34.06 3.02
1033 1063 3.023591 GCGCACCAACGAACTAGGC 62.024 63.158 0.30 0.00 34.06 3.93
1034 1064 1.666553 CGCACCAACGAACTAGGCA 60.667 57.895 0.00 0.00 34.06 4.75
1035 1065 1.225376 CGCACCAACGAACTAGGCAA 61.225 55.000 0.00 0.00 34.06 4.52
1046 1076 3.428316 CGAACTAGGCAAGAACTCTCCTC 60.428 52.174 0.00 0.00 0.00 3.71
1065 1095 0.983378 CGACCTCATCCCTTCCCCTT 60.983 60.000 0.00 0.00 0.00 3.95
1088 1121 0.933700 CTCCTCCTCCTTCCTCTCCT 59.066 60.000 0.00 0.00 0.00 3.69
1110 1143 6.373774 TCCTAGTCGTACCTCTTCTTTACTTG 59.626 42.308 0.00 0.00 0.00 3.16
1111 1144 6.150809 CCTAGTCGTACCTCTTCTTTACTTGT 59.849 42.308 0.00 0.00 0.00 3.16
1112 1145 7.335422 CCTAGTCGTACCTCTTCTTTACTTGTA 59.665 40.741 0.00 0.00 0.00 2.41
1114 1147 6.072230 AGTCGTACCTCTTCTTTACTTGTACC 60.072 42.308 0.00 0.00 0.00 3.34
1115 1148 6.006449 TCGTACCTCTTCTTTACTTGTACCT 58.994 40.000 0.00 0.00 0.00 3.08
1116 1149 6.072286 TCGTACCTCTTCTTTACTTGTACCTG 60.072 42.308 0.00 0.00 0.00 4.00
1118 1151 3.927142 CCTCTTCTTTACTTGTACCTGCG 59.073 47.826 0.00 0.00 0.00 5.18
1144 1177 1.000396 GACCCCATGAAGCAGCCTT 60.000 57.895 0.00 0.00 0.00 4.35
1155 1188 2.036098 CAGCCTTGTGCCCATGGA 59.964 61.111 15.22 0.00 42.71 3.41
1170 1203 2.187958 CATGGACTCAAGGTCTACCCA 58.812 52.381 0.00 0.00 43.97 4.51
1176 1209 4.287552 GACTCAAGGTCTACCCAATCCTA 58.712 47.826 0.00 0.00 41.46 2.94
1182 1215 2.116238 GTCTACCCAATCCTAGGCACA 58.884 52.381 2.96 0.00 0.00 4.57
1251 1284 2.271497 GTGATGCAGAGCAGCCCT 59.729 61.111 4.70 0.00 44.94 5.19
1254 1287 1.227793 GATGCAGAGCAGCCCTACC 60.228 63.158 0.00 0.00 43.65 3.18
1266 1299 1.705997 GCCCTACCCATACCCTGGTG 61.706 65.000 0.00 0.00 44.30 4.17
1278 1311 0.182537 CCCTGGTGTTCAAGGTGTCA 59.817 55.000 0.00 0.00 0.00 3.58
1334 1367 2.370281 AACGTGGAGCACATACTCAG 57.630 50.000 0.00 0.00 38.50 3.35
1374 1407 2.100631 CAAGGGCGAGCTTACGGTG 61.101 63.158 0.00 0.00 0.00 4.94
1422 1455 2.295885 GGCATCTTCAACTCTGATGGG 58.704 52.381 0.00 0.00 38.30 4.00
1476 1509 1.222115 ACGAGTTCAACAAGCGCTCC 61.222 55.000 12.06 0.00 0.00 4.70
1491 1524 1.469423 CGCTCCCTTAGGAACTTCGTC 60.469 57.143 0.00 0.00 43.40 4.20
1515 1548 0.316204 ATGTCGTCCGTTTCGAGGTT 59.684 50.000 0.00 0.00 37.99 3.50
1518 1551 0.102844 TCGTCCGTTTCGAGGTTGTT 59.897 50.000 0.00 0.00 33.38 2.83
1521 1554 1.259770 GTCCGTTTCGAGGTTGTTGAC 59.740 52.381 0.00 0.00 0.00 3.18
1709 1744 2.175811 GTTCATGGCCGCGTTCAC 59.824 61.111 4.92 0.00 0.00 3.18
1759 1800 0.320374 CTTGTCGCCTACCAAGTGGA 59.680 55.000 3.83 0.00 38.94 4.02
1767 1808 0.744414 CTACCAAGTGGATGTGGCGG 60.744 60.000 3.83 0.00 38.58 6.13
1800 1841 2.121538 CGACATGGAGCCGGAGAGA 61.122 63.158 5.05 0.00 0.00 3.10
1831 1872 3.499737 CGCTCGCCAACATCCACC 61.500 66.667 0.00 0.00 0.00 4.61
1837 1878 1.078426 GCCAACATCCACCGCTACT 60.078 57.895 0.00 0.00 0.00 2.57
1842 1883 1.360551 CATCCACCGCTACTCCGAG 59.639 63.158 0.00 0.00 0.00 4.63
1843 1884 2.491022 ATCCACCGCTACTCCGAGC 61.491 63.158 0.00 0.00 39.20 5.03
1857 1898 1.583967 CGAGCAGATCGTCCGTGAC 60.584 63.158 0.00 0.00 46.62 3.67
1893 1946 3.832171 GCGCGCAGAGACGACTTG 61.832 66.667 29.10 0.00 34.06 3.16
1899 1955 1.011451 GCAGAGACGACTTGCTGTCC 61.011 60.000 12.11 0.00 42.49 4.02
2069 3488 3.326210 CGAGATCCGCGCTTCAGC 61.326 66.667 5.56 0.00 37.78 4.26
2127 3546 0.036164 AAATGCACTACCTCCACGCA 59.964 50.000 0.00 0.00 36.95 5.24
2128 3547 0.036164 AATGCACTACCTCCACGCAA 59.964 50.000 0.00 0.00 35.98 4.85
2250 3669 1.502163 GGCTGATGACATACTGCGCC 61.502 60.000 4.18 0.00 33.08 6.53
2302 3721 1.513622 GAGGACTGCGAGGAGTTCC 59.486 63.158 0.00 2.50 0.00 3.62
2364 3783 1.675219 GAGCCCGTTCAAGTACCCA 59.325 57.895 0.00 0.00 0.00 4.51
2377 3796 1.904865 TACCCAGTCTTCCACGCGT 60.905 57.895 5.58 5.58 0.00 6.01
2501 3920 1.933853 GCATCCGAAGCTCGTAATGTT 59.066 47.619 13.91 0.00 38.40 2.71
2572 3999 4.626225 GCTAGCTAGCTCGACTGC 57.374 61.111 33.71 14.66 45.62 4.40
2573 4000 2.029743 GCTAGCTAGCTCGACTGCT 58.970 57.895 33.71 4.45 45.62 4.24
2574 4001 1.231221 GCTAGCTAGCTCGACTGCTA 58.769 55.000 33.71 6.26 45.62 3.49
2582 4009 0.108615 GCTCGACTGCTAGCTTGGAA 60.109 55.000 17.23 0.00 35.80 3.53
2632 4059 4.924625 TGCTCTCTACTCCAGTTTCTAGT 58.075 43.478 0.00 0.00 0.00 2.57
2633 4060 4.702612 TGCTCTCTACTCCAGTTTCTAGTG 59.297 45.833 0.00 0.00 0.00 2.74
2639 4066 6.482524 TCTACTCCAGTTTCTAGTGCTCTTA 58.517 40.000 0.00 0.00 0.00 2.10
2819 4249 9.956720 GATTATTGCATTGATACTTACTGCTTT 57.043 29.630 0.00 0.00 34.02 3.51
2854 4284 7.254556 CGAATCTACTGCTTTTTGCTATGATGA 60.255 37.037 0.00 0.00 43.37 2.92
2861 4291 9.309516 ACTGCTTTTTGCTATGATGATAATTTG 57.690 29.630 0.00 0.00 43.37 2.32
2862 4292 9.309516 CTGCTTTTTGCTATGATGATAATTTGT 57.690 29.630 0.00 0.00 43.37 2.83
2967 4536 6.302535 TGTCTTATATTTGGAAACGGAGGA 57.697 37.500 0.00 0.00 0.00 3.71
2968 4537 6.713276 TGTCTTATATTTGGAAACGGAGGAA 58.287 36.000 0.00 0.00 0.00 3.36
2973 4542 9.169592 CTTATATTTGGAAACGGAGGAAGTAAA 57.830 33.333 0.00 0.00 0.00 2.01
2993 4563 3.433513 AAAAGTATCCTACGACCGAGC 57.566 47.619 0.00 0.00 0.00 5.03
3040 4610 1.228552 AAAAGCCTCCCGTGCATGT 60.229 52.632 4.96 0.00 0.00 3.21
3052 4622 3.430931 CCGTGCATGTAAATTTTACCCG 58.569 45.455 14.99 8.27 0.00 5.28
3057 4627 5.350091 GTGCATGTAAATTTTACCCGCAAAT 59.650 36.000 23.38 7.59 0.00 2.32
3065 4635 9.361315 GTAAATTTTACCCGCAAATATTGAGTT 57.639 29.630 7.90 0.00 0.00 3.01
3074 4644 7.039993 ACCCGCAAATATTGAGTTCTAAACTTT 60.040 33.333 0.00 0.00 43.03 2.66
3097 4668 7.948034 TTTTTGGGGGTACATATTGTAGAAG 57.052 36.000 0.00 0.00 32.84 2.85
3118 4689 5.782893 AGGAATAGAGAAGGAGATTGACG 57.217 43.478 0.00 0.00 0.00 4.35
3119 4690 5.205056 AGGAATAGAGAAGGAGATTGACGT 58.795 41.667 0.00 0.00 0.00 4.34
3124 4695 4.688021 AGAGAAGGAGATTGACGTAATGC 58.312 43.478 0.00 0.00 0.00 3.56
3130 4701 1.206132 AGATTGACGTAATGCGGTGGA 59.794 47.619 0.00 0.00 46.52 4.02
3133 4704 2.963548 TGACGTAATGCGGTGGATTA 57.036 45.000 0.00 0.00 46.52 1.75
3145 4716 8.856153 AATGCGGTGGATTATATTGTTGTATA 57.144 30.769 0.00 0.00 0.00 1.47
3146 4717 9.461312 AATGCGGTGGATTATATTGTTGTATAT 57.539 29.630 0.00 0.00 0.00 0.86
3159 4730 4.933330 TGTTGTATATCTTGAGCCTCGTC 58.067 43.478 0.00 0.00 0.00 4.20
3163 4734 1.746470 TATCTTGAGCCTCGTCGACA 58.254 50.000 17.16 1.87 0.00 4.35
3165 4736 0.171231 TCTTGAGCCTCGTCGACATG 59.829 55.000 17.16 7.09 0.00 3.21
3167 4738 1.132453 CTTGAGCCTCGTCGACATGTA 59.868 52.381 17.16 0.00 0.00 2.29
3194 4765 6.611613 AGGAGTACATGATCAACTTGAAGA 57.388 37.500 0.00 0.00 0.00 2.87
3196 4767 6.876257 AGGAGTACATGATCAACTTGAAGAAC 59.124 38.462 0.00 0.00 0.00 3.01
3217 4788 8.738645 AGAACAAGACAAGTTAGAACAAATCT 57.261 30.769 0.00 0.00 42.48 2.40
3264 4836 2.093181 TCACAATACTCAACATCCCCCG 60.093 50.000 0.00 0.00 0.00 5.73
3290 4862 0.388649 CAAAGGTAGCGACGCAGACT 60.389 55.000 23.70 13.20 0.00 3.24
3298 4870 1.576920 CGACGCAGACTGTGAGACT 59.423 57.895 22.51 0.00 0.00 3.24
3321 4893 5.281314 TGGAGAAGAATCCTAAGGTAAGCT 58.719 41.667 0.00 0.00 40.29 3.74
3324 4896 6.228616 AGAAGAATCCTAAGGTAAGCTGAC 57.771 41.667 0.00 0.00 0.00 3.51
3326 4898 4.279145 AGAATCCTAAGGTAAGCTGACGA 58.721 43.478 0.00 0.00 0.00 4.20
3369 4941 2.402049 CAGTCGTAACGATCGATGCATC 59.598 50.000 24.34 17.10 38.42 3.91
3394 4966 2.957402 AGATGTGGCTGGAGTGAAAA 57.043 45.000 0.00 0.00 0.00 2.29
3406 5469 5.414789 TGGAGTGAAAACCGATGAGATTA 57.585 39.130 0.00 0.00 0.00 1.75
3441 5504 1.135315 CCCTTTGTGCCGATGTCAATG 60.135 52.381 0.00 0.00 0.00 2.82
3444 5507 3.181507 CCTTTGTGCCGATGTCAATGTAG 60.182 47.826 0.00 0.00 0.00 2.74
3499 6363 2.182842 GCCATGCGAGGGATGACAC 61.183 63.158 0.00 0.00 0.00 3.67
3522 6724 3.718210 GATGTCGACTCGGGGTGGC 62.718 68.421 17.92 0.00 0.00 5.01
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
82 83 4.545823 TTGATGTCGTTTCCTTGTTGAC 57.454 40.909 0.00 0.00 0.00 3.18
85 86 4.275936 CCTCTTTGATGTCGTTTCCTTGTT 59.724 41.667 0.00 0.00 0.00 2.83
107 108 2.746375 ATGGTGGACGATGGAGGCC 61.746 63.158 0.00 0.00 0.00 5.19
183 184 1.072505 GGTTGAAGGGACCAGCGAA 59.927 57.895 0.00 0.00 37.14 4.70
298 299 4.681978 GTCCTTCACAGCGCGGGT 62.682 66.667 13.26 7.27 0.00 5.28
329 331 0.965866 CTAGGCGGATCTGCGGGATA 60.966 60.000 20.09 9.31 34.33 2.59
393 399 3.551496 CTCAGGCGTGGGCTTGGAA 62.551 63.158 6.56 0.00 45.55 3.53
394 400 4.020617 CTCAGGCGTGGGCTTGGA 62.021 66.667 6.56 0.00 45.55 3.53
410 417 3.610669 CGCGGCTAGATCTGGGCT 61.611 66.667 26.45 0.00 34.50 5.19
472 491 4.096003 CAAGGTCGGGGGCGTCAT 62.096 66.667 0.00 0.00 0.00 3.06
482 501 2.787249 CATGCGGCTTCAAGGTCG 59.213 61.111 0.00 0.00 37.38 4.79
497 516 0.768221 ATCCCATACCTCCACGGCAT 60.768 55.000 0.00 0.00 35.61 4.40
560 581 4.390556 ACTCGAGGCCCTCCTGCT 62.391 66.667 18.41 0.00 44.46 4.24
561 582 3.844090 GACTCGAGGCCCTCCTGC 61.844 72.222 18.41 0.00 44.46 4.85
562 583 3.151022 GGACTCGAGGCCCTCCTG 61.151 72.222 28.29 0.36 44.46 3.86
713 737 3.682292 GATCCCGTCGGCTTGCCTT 62.682 63.158 5.50 0.00 0.00 4.35
718 746 2.584608 CCAAGATCCCGTCGGCTT 59.415 61.111 5.50 0.82 0.00 4.35
779 809 2.539338 GCACACGAAAACGCCCTCA 61.539 57.895 0.00 0.00 0.00 3.86
785 815 8.649810 ATTATAAAAGTAAGCACACGAAAACG 57.350 30.769 0.00 0.00 0.00 3.60
786 816 9.821662 AGATTATAAAAGTAAGCACACGAAAAC 57.178 29.630 0.00 0.00 0.00 2.43
789 819 9.865321 AGTAGATTATAAAAGTAAGCACACGAA 57.135 29.630 0.00 0.00 0.00 3.85
790 820 9.297586 CAGTAGATTATAAAAGTAAGCACACGA 57.702 33.333 0.00 0.00 0.00 4.35
791 821 8.056571 GCAGTAGATTATAAAAGTAAGCACACG 58.943 37.037 0.00 0.00 0.00 4.49
792 822 8.056571 CGCAGTAGATTATAAAAGTAAGCACAC 58.943 37.037 0.00 0.00 0.00 3.82
793 823 7.977293 TCGCAGTAGATTATAAAAGTAAGCACA 59.023 33.333 0.00 0.00 0.00 4.57
794 824 8.348983 TCGCAGTAGATTATAAAAGTAAGCAC 57.651 34.615 0.00 0.00 0.00 4.40
801 831 9.793245 CCGTTTTATCGCAGTAGATTATAAAAG 57.207 33.333 0.00 0.00 34.44 2.27
802 832 9.531942 TCCGTTTTATCGCAGTAGATTATAAAA 57.468 29.630 0.00 0.00 32.45 1.52
803 833 9.188588 CTCCGTTTTATCGCAGTAGATTATAAA 57.811 33.333 0.00 0.00 32.39 1.40
804 834 8.570488 TCTCCGTTTTATCGCAGTAGATTATAA 58.430 33.333 0.00 0.00 32.39 0.98
805 835 8.102800 TCTCCGTTTTATCGCAGTAGATTATA 57.897 34.615 0.00 0.00 32.39 0.98
806 836 6.978338 TCTCCGTTTTATCGCAGTAGATTAT 58.022 36.000 0.00 0.00 32.39 1.28
807 837 6.381481 TCTCCGTTTTATCGCAGTAGATTA 57.619 37.500 0.00 0.00 32.39 1.75
808 838 5.258456 TCTCCGTTTTATCGCAGTAGATT 57.742 39.130 0.00 0.00 32.39 2.40
809 839 4.913335 TCTCCGTTTTATCGCAGTAGAT 57.087 40.909 0.00 0.00 34.79 1.98
810 840 4.913335 ATCTCCGTTTTATCGCAGTAGA 57.087 40.909 0.00 0.00 0.00 2.59
811 841 7.459394 TTTTATCTCCGTTTTATCGCAGTAG 57.541 36.000 0.00 0.00 0.00 2.57
812 842 7.517734 GCATTTTATCTCCGTTTTATCGCAGTA 60.518 37.037 0.00 0.00 0.00 2.74
813 843 6.715464 CATTTTATCTCCGTTTTATCGCAGT 58.285 36.000 0.00 0.00 0.00 4.40
814 844 5.621228 GCATTTTATCTCCGTTTTATCGCAG 59.379 40.000 0.00 0.00 0.00 5.18
815 845 5.065346 TGCATTTTATCTCCGTTTTATCGCA 59.935 36.000 0.00 0.00 0.00 5.10
816 846 5.507077 TGCATTTTATCTCCGTTTTATCGC 58.493 37.500 0.00 0.00 0.00 4.58
817 847 8.560576 AATTGCATTTTATCTCCGTTTTATCG 57.439 30.769 0.00 0.00 0.00 2.92
820 850 9.296400 GCTTAATTGCATTTTATCTCCGTTTTA 57.704 29.630 0.00 0.00 0.00 1.52
821 851 7.277760 GGCTTAATTGCATTTTATCTCCGTTTT 59.722 33.333 0.00 0.00 34.04 2.43
822 852 6.756542 GGCTTAATTGCATTTTATCTCCGTTT 59.243 34.615 0.00 0.00 34.04 3.60
823 853 6.127479 TGGCTTAATTGCATTTTATCTCCGTT 60.127 34.615 0.00 0.00 34.04 4.44
824 854 5.359576 TGGCTTAATTGCATTTTATCTCCGT 59.640 36.000 0.00 0.00 34.04 4.69
825 855 5.830912 TGGCTTAATTGCATTTTATCTCCG 58.169 37.500 0.00 0.00 34.04 4.63
826 856 7.225341 CCTTTGGCTTAATTGCATTTTATCTCC 59.775 37.037 0.00 0.00 34.04 3.71
827 857 7.225341 CCCTTTGGCTTAATTGCATTTTATCTC 59.775 37.037 0.00 0.00 34.04 2.75
828 858 7.049754 CCCTTTGGCTTAATTGCATTTTATCT 58.950 34.615 0.00 0.00 34.04 1.98
829 859 7.047271 TCCCTTTGGCTTAATTGCATTTTATC 58.953 34.615 0.00 0.00 34.04 1.75
830 860 6.956497 TCCCTTTGGCTTAATTGCATTTTAT 58.044 32.000 0.00 0.00 34.04 1.40
831 861 6.365970 TCCCTTTGGCTTAATTGCATTTTA 57.634 33.333 0.00 0.00 34.04 1.52
832 862 5.240013 TCCCTTTGGCTTAATTGCATTTT 57.760 34.783 0.00 0.00 34.04 1.82
833 863 4.906747 TCCCTTTGGCTTAATTGCATTT 57.093 36.364 0.00 0.00 34.04 2.32
834 864 4.470664 TGATCCCTTTGGCTTAATTGCATT 59.529 37.500 0.00 0.00 34.04 3.56
835 865 4.032310 TGATCCCTTTGGCTTAATTGCAT 58.968 39.130 0.00 0.00 34.04 3.96
878 908 2.088423 ACTGCACAACGACTTTTCCAA 58.912 42.857 0.00 0.00 0.00 3.53
879 909 1.400142 CACTGCACAACGACTTTTCCA 59.600 47.619 0.00 0.00 0.00 3.53
882 912 1.094785 AGCACTGCACAACGACTTTT 58.905 45.000 3.30 0.00 0.00 2.27
885 915 1.153369 ACAGCACTGCACAACGACT 60.153 52.632 3.30 0.00 0.00 4.18
888 918 2.246397 CGACAGCACTGCACAACG 59.754 61.111 3.30 0.10 0.00 4.10
900 930 1.738099 CCTTCACTTCCGGCGACAG 60.738 63.158 9.30 6.05 0.00 3.51
901 931 2.342279 CCTTCACTTCCGGCGACA 59.658 61.111 9.30 0.00 0.00 4.35
902 932 3.119096 GCCTTCACTTCCGGCGAC 61.119 66.667 9.30 0.00 33.64 5.19
905 935 3.579685 GAAGCCTTCACTTCCGGC 58.420 61.111 0.00 0.00 40.18 6.13
909 939 0.955919 CACCGGGAAGCCTTCACTTC 60.956 60.000 6.32 0.00 44.40 3.01
910 940 1.073199 CACCGGGAAGCCTTCACTT 59.927 57.895 6.32 0.00 0.00 3.16
911 941 2.750350 CACCGGGAAGCCTTCACT 59.250 61.111 6.32 0.00 0.00 3.41
912 942 2.359975 CCACCGGGAAGCCTTCAC 60.360 66.667 6.32 0.78 35.59 3.18
913 943 4.344865 GCCACCGGGAAGCCTTCA 62.345 66.667 6.32 0.00 35.59 3.02
919 949 4.636435 ACGTTGGCCACCGGGAAG 62.636 66.667 27.20 6.70 35.59 3.46
920 950 4.939368 CACGTTGGCCACCGGGAA 62.939 66.667 27.20 0.00 35.59 3.97
924 954 4.920112 TCACCACGTTGGCCACCG 62.920 66.667 22.30 22.30 42.67 4.94
925 955 3.284449 GTCACCACGTTGGCCACC 61.284 66.667 3.88 0.00 42.67 4.61
926 956 1.381165 AAAGTCACCACGTTGGCCAC 61.381 55.000 3.88 0.00 42.67 5.01
927 957 1.077357 AAAGTCACCACGTTGGCCA 60.077 52.632 0.00 0.00 42.67 5.36
928 958 1.358759 CAAAGTCACCACGTTGGCC 59.641 57.895 0.00 0.00 42.67 5.36
931 961 1.531149 CTAGCCAAAGTCACCACGTTG 59.469 52.381 0.00 0.00 40.55 4.10
932 962 1.878953 CTAGCCAAAGTCACCACGTT 58.121 50.000 0.00 0.00 0.00 3.99
933 963 0.602905 GCTAGCCAAAGTCACCACGT 60.603 55.000 2.29 0.00 0.00 4.49
934 964 1.626654 CGCTAGCCAAAGTCACCACG 61.627 60.000 9.66 0.00 0.00 4.94
935 965 1.912371 GCGCTAGCCAAAGTCACCAC 61.912 60.000 9.66 0.00 37.42 4.16
936 966 1.671054 GCGCTAGCCAAAGTCACCA 60.671 57.895 9.66 0.00 37.42 4.17
937 967 2.740714 CGCGCTAGCCAAAGTCACC 61.741 63.158 9.66 0.00 41.18 4.02
938 968 1.736645 TCGCGCTAGCCAAAGTCAC 60.737 57.895 9.66 0.00 41.18 3.67
939 969 1.736645 GTCGCGCTAGCCAAAGTCA 60.737 57.895 9.66 0.00 41.18 3.41
940 970 1.414527 GAGTCGCGCTAGCCAAAGTC 61.415 60.000 9.66 3.20 41.18 3.01
941 971 1.446272 GAGTCGCGCTAGCCAAAGT 60.446 57.895 9.66 0.00 41.18 2.66
942 972 2.167861 GGAGTCGCGCTAGCCAAAG 61.168 63.158 9.66 0.00 41.18 2.77
943 973 2.125673 GGAGTCGCGCTAGCCAAA 60.126 61.111 9.66 0.00 41.18 3.28
944 974 4.492160 CGGAGTCGCGCTAGCCAA 62.492 66.667 9.66 0.00 41.18 4.52
946 976 2.515947 CTATCGGAGTCGCGCTAGCC 62.516 65.000 9.66 0.79 41.18 3.93
947 977 1.154376 CTATCGGAGTCGCGCTAGC 60.154 63.158 5.56 4.06 40.74 3.42
948 978 0.866427 TTCTATCGGAGTCGCGCTAG 59.134 55.000 5.56 0.00 36.13 3.42
949 979 1.003116 GTTTCTATCGGAGTCGCGCTA 60.003 52.381 5.56 0.00 36.13 4.26
950 980 0.248539 GTTTCTATCGGAGTCGCGCT 60.249 55.000 5.56 0.89 36.13 5.92
951 981 1.529883 CGTTTCTATCGGAGTCGCGC 61.530 60.000 0.00 0.00 36.13 6.86
952 982 1.529883 GCGTTTCTATCGGAGTCGCG 61.530 60.000 0.00 0.00 37.77 5.87
953 983 1.207377 GGCGTTTCTATCGGAGTCGC 61.207 60.000 0.00 0.00 42.33 5.19
954 984 0.928908 CGGCGTTTCTATCGGAGTCG 60.929 60.000 0.00 0.00 37.82 4.18
955 985 1.207377 GCGGCGTTTCTATCGGAGTC 61.207 60.000 9.37 0.00 0.00 3.36
956 986 1.226888 GCGGCGTTTCTATCGGAGT 60.227 57.895 9.37 0.00 0.00 3.85
957 987 0.527817 AAGCGGCGTTTCTATCGGAG 60.528 55.000 9.37 0.00 0.00 4.63
958 988 0.108520 AAAGCGGCGTTTCTATCGGA 60.109 50.000 9.96 0.00 0.00 4.55
959 989 0.725117 AAAAGCGGCGTTTCTATCGG 59.275 50.000 9.96 0.00 0.00 4.18
960 990 1.797964 CAAAAGCGGCGTTTCTATCG 58.202 50.000 9.96 0.00 0.00 2.92
961 991 1.535088 GCAAAAGCGGCGTTTCTATC 58.465 50.000 9.96 0.00 0.00 2.08
962 992 0.170339 GGCAAAAGCGGCGTTTCTAT 59.830 50.000 9.96 0.00 0.00 1.98
963 993 0.887387 AGGCAAAAGCGGCGTTTCTA 60.887 50.000 9.96 0.00 36.37 2.10
964 994 1.734388 AAGGCAAAAGCGGCGTTTCT 61.734 50.000 9.96 4.10 36.05 2.52
965 995 0.874175 AAAGGCAAAAGCGGCGTTTC 60.874 50.000 9.96 6.61 43.44 2.78
966 996 0.386113 TAAAGGCAAAAGCGGCGTTT 59.614 45.000 9.37 5.78 46.94 3.60
967 997 0.386113 TTAAAGGCAAAAGCGGCGTT 59.614 45.000 9.37 0.00 40.68 4.84
968 998 0.386113 TTTAAAGGCAAAAGCGGCGT 59.614 45.000 9.37 0.00 36.37 5.68
969 999 1.708822 ATTTAAAGGCAAAAGCGGCG 58.291 45.000 0.51 0.51 36.37 6.46
970 1000 3.062099 GCTAATTTAAAGGCAAAAGCGGC 59.938 43.478 0.00 0.00 0.00 6.53
971 1001 3.616821 GGCTAATTTAAAGGCAAAAGCGG 59.383 43.478 11.02 0.00 39.24 5.52
972 1002 3.303229 CGGCTAATTTAAAGGCAAAAGCG 59.697 43.478 11.02 3.74 39.38 4.68
973 1003 3.062099 GCGGCTAATTTAAAGGCAAAAGC 59.938 43.478 11.02 5.69 39.38 3.51
974 1004 4.241681 TGCGGCTAATTTAAAGGCAAAAG 58.758 39.130 0.00 3.37 39.38 2.27
975 1005 4.258702 TGCGGCTAATTTAAAGGCAAAA 57.741 36.364 0.00 0.00 39.38 2.44
976 1006 3.944055 TGCGGCTAATTTAAAGGCAAA 57.056 38.095 0.00 0.00 39.38 3.68
977 1007 3.779759 CATGCGGCTAATTTAAAGGCAA 58.220 40.909 0.00 0.00 39.38 4.52
978 1008 2.481104 GCATGCGGCTAATTTAAAGGCA 60.481 45.455 0.00 6.25 39.38 4.75
979 1009 2.127251 GCATGCGGCTAATTTAAAGGC 58.873 47.619 0.00 0.00 40.25 4.35
980 1010 3.435105 TGCATGCGGCTAATTTAAAGG 57.565 42.857 14.09 0.00 45.15 3.11
981 1011 3.182972 GCATGCATGCGGCTAATTTAAAG 59.817 43.478 33.99 0.31 44.67 1.85
982 1012 3.122297 GCATGCATGCGGCTAATTTAAA 58.878 40.909 33.99 0.00 44.67 1.52
983 1013 2.741612 GCATGCATGCGGCTAATTTAA 58.258 42.857 33.99 0.00 44.67 1.52
984 1014 2.420628 GCATGCATGCGGCTAATTTA 57.579 45.000 33.99 0.00 44.67 1.40
985 1015 3.277652 GCATGCATGCGGCTAATTT 57.722 47.368 33.99 0.00 44.67 1.82
995 1025 0.306840 GATCGAGTGGTGCATGCATG 59.693 55.000 25.64 22.70 0.00 4.06
996 1026 1.156034 CGATCGAGTGGTGCATGCAT 61.156 55.000 25.64 7.59 0.00 3.96
997 1027 1.810853 CGATCGAGTGGTGCATGCA 60.811 57.895 18.46 18.46 0.00 3.96
998 1028 3.009140 CGATCGAGTGGTGCATGC 58.991 61.111 10.26 11.82 0.00 4.06
999 1029 2.863853 CGCGATCGAGTGGTGCATG 61.864 63.158 21.57 0.00 38.10 4.06
1000 1030 2.583319 CGCGATCGAGTGGTGCAT 60.583 61.111 21.57 0.00 38.10 3.96
1003 1033 3.545481 GTGCGCGATCGAGTGGTG 61.545 66.667 21.57 1.43 38.10 4.17
1004 1034 4.796231 GGTGCGCGATCGAGTGGT 62.796 66.667 21.57 0.00 38.10 4.16
1005 1035 4.794439 TGGTGCGCGATCGAGTGG 62.794 66.667 21.57 5.40 38.10 4.00
1006 1036 2.809174 TTGGTGCGCGATCGAGTG 60.809 61.111 21.57 8.73 38.10 3.51
1007 1037 2.809601 GTTGGTGCGCGATCGAGT 60.810 61.111 21.57 0.00 38.10 4.18
1008 1038 3.902063 CGTTGGTGCGCGATCGAG 61.902 66.667 21.57 18.10 38.10 4.04
1009 1039 3.900393 TTCGTTGGTGCGCGATCGA 62.900 57.895 21.57 10.77 36.97 3.59
1010 1040 3.474904 TTCGTTGGTGCGCGATCG 61.475 61.111 12.10 11.69 36.97 3.69
1011 1041 1.074319 TAGTTCGTTGGTGCGCGATC 61.074 55.000 12.10 0.28 36.97 3.69
1012 1042 1.076533 CTAGTTCGTTGGTGCGCGAT 61.077 55.000 12.10 0.00 36.97 4.58
1013 1043 1.731613 CTAGTTCGTTGGTGCGCGA 60.732 57.895 12.10 0.00 35.17 5.87
1014 1044 2.726691 CCTAGTTCGTTGGTGCGCG 61.727 63.158 0.00 0.00 0.00 6.86
1015 1045 3.023591 GCCTAGTTCGTTGGTGCGC 62.024 63.158 0.00 0.00 0.00 6.09
1016 1046 1.225376 TTGCCTAGTTCGTTGGTGCG 61.225 55.000 0.00 0.00 0.00 5.34
1017 1047 0.517316 CTTGCCTAGTTCGTTGGTGC 59.483 55.000 0.00 0.00 0.00 5.01
1018 1048 2.163818 TCTTGCCTAGTTCGTTGGTG 57.836 50.000 0.00 0.00 0.00 4.17
1019 1049 2.104281 AGTTCTTGCCTAGTTCGTTGGT 59.896 45.455 0.00 0.00 0.00 3.67
1020 1050 2.737252 GAGTTCTTGCCTAGTTCGTTGG 59.263 50.000 0.00 0.00 0.00 3.77
1021 1051 3.654414 AGAGTTCTTGCCTAGTTCGTTG 58.346 45.455 0.00 0.00 0.00 4.10
1022 1052 3.306156 GGAGAGTTCTTGCCTAGTTCGTT 60.306 47.826 0.00 0.00 0.00 3.85
1023 1053 2.231721 GGAGAGTTCTTGCCTAGTTCGT 59.768 50.000 0.00 0.00 0.00 3.85
1024 1054 2.494073 AGGAGAGTTCTTGCCTAGTTCG 59.506 50.000 0.00 0.00 0.00 3.95
1025 1055 3.428316 CGAGGAGAGTTCTTGCCTAGTTC 60.428 52.174 0.00 0.00 0.00 3.01
1026 1056 2.494073 CGAGGAGAGTTCTTGCCTAGTT 59.506 50.000 0.00 0.00 0.00 2.24
1027 1057 2.096248 CGAGGAGAGTTCTTGCCTAGT 58.904 52.381 0.00 0.00 0.00 2.57
1028 1058 2.098443 GTCGAGGAGAGTTCTTGCCTAG 59.902 54.545 0.00 0.00 0.00 3.02
1029 1059 2.093106 GTCGAGGAGAGTTCTTGCCTA 58.907 52.381 0.00 0.00 0.00 3.93
1030 1060 0.892063 GTCGAGGAGAGTTCTTGCCT 59.108 55.000 0.00 0.00 0.00 4.75
1031 1061 0.108567 GGTCGAGGAGAGTTCTTGCC 60.109 60.000 0.00 0.00 0.00 4.52
1032 1062 0.892063 AGGTCGAGGAGAGTTCTTGC 59.108 55.000 0.00 0.00 0.00 4.01
1033 1063 2.163509 TGAGGTCGAGGAGAGTTCTTG 58.836 52.381 0.00 0.00 0.00 3.02
1034 1064 2.588464 TGAGGTCGAGGAGAGTTCTT 57.412 50.000 0.00 0.00 0.00 2.52
1035 1065 2.650322 GATGAGGTCGAGGAGAGTTCT 58.350 52.381 0.00 0.00 0.00 3.01
1046 1076 0.983378 AAGGGGAAGGGATGAGGTCG 60.983 60.000 0.00 0.00 0.00 4.79
1065 1095 0.930726 GAGGAAGGAGGAGGAGGAGA 59.069 60.000 0.00 0.00 0.00 3.71
1088 1121 7.119846 GGTACAAGTAAAGAAGAGGTACGACTA 59.880 40.741 0.00 0.00 32.55 2.59
1133 1166 2.598394 GGGCACAAGGCTGCTTCA 60.598 61.111 0.00 0.00 44.01 3.02
1144 1177 1.379916 CCTTGAGTCCATGGGCACA 59.620 57.895 20.74 16.71 34.82 4.57
1155 1188 3.207044 AGGATTGGGTAGACCTTGAGT 57.793 47.619 0.00 0.00 41.11 3.41
1236 1269 1.227793 GGTAGGGCTGCTCTGCATC 60.228 63.158 19.29 0.00 38.13 3.91
1266 1299 1.784525 CGAGACCTGACACCTTGAAC 58.215 55.000 0.00 0.00 0.00 3.18
1392 1425 1.377202 GAAGATGCCGTGGCCAAGA 60.377 57.895 21.23 0.67 41.09 3.02
1491 1524 1.717555 CGAAACGGACGACATCGACG 61.718 60.000 8.54 13.76 43.93 5.12
1573 1606 2.320587 GCTCCAACACGTCCTGCAG 61.321 63.158 6.78 6.78 0.00 4.41
1712 1747 4.794439 CGATGGTGTCCTGCGCGA 62.794 66.667 12.10 0.00 0.00 5.87
1741 1776 0.981183 ATCCACTTGGTAGGCGACAA 59.019 50.000 0.00 0.00 36.34 3.18
1759 1800 2.671070 CCTCTTGACCCGCCACAT 59.329 61.111 0.00 0.00 0.00 3.21
1767 1808 1.446966 GTCGAGCAGCCTCTTGACC 60.447 63.158 10.59 0.00 40.16 4.02
1831 1872 1.082431 CGATCTGCTCGGAGTAGCG 60.082 63.158 17.09 12.28 45.85 4.26
1842 1883 2.579787 CGGTCACGGACGATCTGC 60.580 66.667 0.00 0.00 36.18 4.26
1843 1884 2.579787 GCGGTCACGGACGATCTG 60.580 66.667 0.00 0.00 41.36 2.90
1980 2041 3.807538 GTCAGCGCCGACGAGGTA 61.808 66.667 8.21 0.00 43.93 3.08
2003 2064 1.939838 GCGTGGACAGTAACCAGAAGG 60.940 57.143 0.00 0.00 38.14 3.46
2039 2100 0.788995 GATCTCGCGCATGATCTTGG 59.211 55.000 23.81 0.28 36.92 3.61
2077 3496 0.605319 TCCAAGCTGAAATTCGCCGT 60.605 50.000 6.28 0.00 0.00 5.68
2080 3499 0.796312 TCGTCCAAGCTGAAATTCGC 59.204 50.000 0.00 2.51 0.00 4.70
2107 3526 0.447801 GCGTGGAGGTAGTGCATTTG 59.552 55.000 0.00 0.00 0.00 2.32
2127 3546 0.460284 GCATCGACTCGGTGATGGTT 60.460 55.000 16.03 0.00 40.81 3.67
2128 3547 1.141881 GCATCGACTCGGTGATGGT 59.858 57.895 16.03 0.00 40.81 3.55
2223 3642 3.780294 AGTATGTCATCAGCCACCCTTTA 59.220 43.478 0.00 0.00 0.00 1.85
2262 3681 2.429767 CCAGATGCTCTCCAGCCGA 61.430 63.158 0.00 0.00 46.26 5.54
2476 3895 2.592308 GAGCTTCGGATGCCCCTT 59.408 61.111 11.77 0.00 0.00 3.95
2487 3906 4.267928 AGCGTCATTAACATTACGAGCTTC 59.732 41.667 0.00 0.00 37.53 3.86
2501 3920 1.227527 CCCATCCGCAGCGTCATTA 60.228 57.895 15.05 0.00 0.00 1.90
2564 3991 2.593346 ATTCCAAGCTAGCAGTCGAG 57.407 50.000 18.83 0.00 0.00 4.04
2565 3992 3.024547 ACTATTCCAAGCTAGCAGTCGA 58.975 45.455 18.83 3.55 0.00 4.20
2566 3993 3.067461 AGACTATTCCAAGCTAGCAGTCG 59.933 47.826 18.83 1.47 36.81 4.18
2567 3994 4.142049 ACAGACTATTCCAAGCTAGCAGTC 60.142 45.833 18.83 17.78 32.90 3.51
2568 3995 3.772025 ACAGACTATTCCAAGCTAGCAGT 59.228 43.478 18.83 9.50 0.00 4.40
2569 3996 4.399004 ACAGACTATTCCAAGCTAGCAG 57.601 45.455 18.83 8.92 0.00 4.24
2570 3997 4.826274 AACAGACTATTCCAAGCTAGCA 57.174 40.909 18.83 0.00 0.00 3.49
2571 3998 5.643777 TGAAAACAGACTATTCCAAGCTAGC 59.356 40.000 6.62 6.62 0.00 3.42
2572 3999 7.856145 ATGAAAACAGACTATTCCAAGCTAG 57.144 36.000 0.00 0.00 0.00 3.42
2573 4000 7.362056 GCAATGAAAACAGACTATTCCAAGCTA 60.362 37.037 0.00 0.00 0.00 3.32
2574 4001 6.571150 GCAATGAAAACAGACTATTCCAAGCT 60.571 38.462 0.00 0.00 0.00 3.74
2582 4009 7.660112 TGTGATTTGCAATGAAAACAGACTAT 58.340 30.769 0.00 0.00 0.00 2.12
2689 4119 7.286215 GAGTAGCCTCCAGTACAATACATTA 57.714 40.000 0.00 0.00 0.00 1.90
2757 4187 6.421501 TGGTGTAAATATAAATACTCCACGCG 59.578 38.462 3.53 3.53 39.48 6.01
2826 4256 3.201726 GCAAAAAGCAGTAGATTCGCA 57.798 42.857 0.00 0.00 44.79 5.10
2908 4477 7.292713 TCAATAAAGACTACATACGGGCATA 57.707 36.000 0.00 0.00 0.00 3.14
2910 4479 5.601583 TCAATAAAGACTACATACGGGCA 57.398 39.130 0.00 0.00 0.00 5.36
2911 4480 6.913873 TTTCAATAAAGACTACATACGGGC 57.086 37.500 0.00 0.00 0.00 6.13
2977 4546 1.263752 GTCAGCTCGGTCGTAGGATAC 59.736 57.143 0.00 0.00 38.50 2.24
2985 4555 2.439701 TAGGGGTCAGCTCGGTCG 60.440 66.667 0.00 0.00 0.00 4.79
2993 4563 1.497161 ATCCGGTTTCTAGGGGTCAG 58.503 55.000 0.00 0.00 0.00 3.51
3040 4610 9.575783 GAACTCAATATTTGCGGGTAAAATTTA 57.424 29.630 0.00 0.00 0.00 1.40
3074 4644 6.217900 TCCTTCTACAATATGTACCCCCAAAA 59.782 38.462 0.00 0.00 0.00 2.44
3078 4648 5.899631 TTCCTTCTACAATATGTACCCCC 57.100 43.478 0.00 0.00 0.00 5.40
3079 4649 8.431910 TCTATTCCTTCTACAATATGTACCCC 57.568 38.462 0.00 0.00 0.00 4.95
3097 4668 5.523438 ACGTCAATCTCCTTCTCTATTCC 57.477 43.478 0.00 0.00 0.00 3.01
3107 4678 1.480954 ACCGCATTACGTCAATCTCCT 59.519 47.619 0.00 0.00 41.42 3.69
3109 4680 1.593006 CCACCGCATTACGTCAATCTC 59.407 52.381 0.00 0.00 41.42 2.75
3112 4683 2.325583 ATCCACCGCATTACGTCAAT 57.674 45.000 0.00 0.00 41.42 2.57
3118 4689 6.966021 ACAACAATATAATCCACCGCATTAC 58.034 36.000 0.00 0.00 0.00 1.89
3119 4690 8.856153 ATACAACAATATAATCCACCGCATTA 57.144 30.769 0.00 0.00 0.00 1.90
3133 4704 7.671302 ACGAGGCTCAAGATATACAACAATAT 58.329 34.615 15.95 0.00 0.00 1.28
3145 4716 1.107114 ATGTCGACGAGGCTCAAGAT 58.893 50.000 15.95 0.00 0.00 2.40
3146 4717 0.171231 CATGTCGACGAGGCTCAAGA 59.829 55.000 15.95 7.37 0.00 3.02
3155 4726 6.458210 TGTACTCCTATATACATGTCGACGA 58.542 40.000 11.62 0.00 0.00 4.20
3191 4762 9.178758 AGATTTGTTCTAACTTGTCTTGTTCTT 57.821 29.630 0.00 0.00 30.96 2.52
3264 4836 0.790814 GTCGCTACCTTTGTGACTGC 59.209 55.000 0.00 0.00 40.54 4.40
3290 4862 3.784178 AGGATTCTTCTCCAGTCTCACA 58.216 45.455 0.00 0.00 37.81 3.58
3298 4870 5.129485 CAGCTTACCTTAGGATTCTTCTCCA 59.871 44.000 4.77 0.00 37.81 3.86
3321 4893 3.074281 GGGGGATGGTGTTCGTCA 58.926 61.111 0.00 0.00 33.11 4.35
3344 4916 1.065273 CGATCGTTACGACTGGGGG 59.935 63.158 10.39 0.00 39.18 5.40
3345 4917 0.666913 ATCGATCGTTACGACTGGGG 59.333 55.000 15.94 0.00 42.37 4.96
3346 4918 1.755161 CATCGATCGTTACGACTGGG 58.245 55.000 15.94 0.00 42.37 4.45
3347 4919 1.121240 GCATCGATCGTTACGACTGG 58.879 55.000 15.94 2.27 42.37 4.00
3348 4920 1.822581 TGCATCGATCGTTACGACTG 58.177 50.000 15.94 5.63 42.37 3.51
3369 4941 1.554160 ACTCCAGCCACATCTTCTGAG 59.446 52.381 0.00 0.00 0.00 3.35
3406 5469 2.032681 GGGCCGACTTGCTTGAGT 59.967 61.111 0.00 0.00 0.00 3.41
3410 5473 1.152756 ACAAAGGGCCGACTTGCTT 60.153 52.632 13.74 0.00 0.00 3.91
3412 5475 2.644992 CACAAAGGGCCGACTTGC 59.355 61.111 13.74 0.00 0.00 4.01
3420 5483 1.523154 TTGACATCGGCACAAAGGGC 61.523 55.000 0.00 0.00 0.00 5.19
3441 5504 0.238817 CATCCTACGCTCTCGGCTAC 59.761 60.000 0.00 0.00 40.69 3.58
3444 5507 2.336809 CCATCCTACGCTCTCGGC 59.663 66.667 0.00 0.00 40.69 5.54
3474 5537 2.028190 CCTCGCATGGCTACCTCG 59.972 66.667 0.00 0.00 0.00 4.63
3522 6724 1.278238 GGCGACTAACTCAACATCGG 58.722 55.000 0.00 0.00 33.45 4.18


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.