Multiple sequence alignment - TraesCS2D01G006600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2D01G006600 chr2D 100.000 4968 0 0 1 4968 3076088 3081055 0.000000e+00 9175
1 TraesCS2D01G006600 chr2D 92.022 727 51 5 1 722 15790052 15789328 0.000000e+00 1014
2 TraesCS2D01G006600 chr2D 86.000 600 70 10 3396 3994 3032517 3033103 9.080000e-177 630
3 TraesCS2D01G006600 chr2D 83.852 514 72 9 4458 4968 2874354 2874859 3.480000e-131 479
4 TraesCS2D01G006600 chr2D 78.814 590 104 16 4389 4968 21917087 21917665 1.310000e-100 377
5 TraesCS2D01G006600 chr2D 86.167 347 28 13 3825 4168 3629101 3629430 1.700000e-94 357
6 TraesCS2D01G006600 chr2D 91.700 253 21 0 3577 3829 3623588 3623840 7.910000e-93 351
7 TraesCS2D01G006600 chr2D 88.652 282 24 5 4027 4306 3033104 3033379 2.220000e-88 337
8 TraesCS2D01G006600 chr2A 88.000 3300 252 66 883 4135 2661182 2657980 0.000000e+00 3768
9 TraesCS2D01G006600 chr2A 91.892 148 11 1 719 865 773373091 773373238 6.520000e-49 206
10 TraesCS2D01G006600 chr2A 91.275 149 12 1 718 865 428088340 428088192 8.430000e-48 202
11 TraesCS2D01G006600 chr2B 88.834 1630 109 33 883 2461 7648974 7647367 0.000000e+00 1934
12 TraesCS2D01G006600 chr2B 89.558 1312 115 19 3028 4333 7646729 7645434 0.000000e+00 1644
13 TraesCS2D01G006600 chr2B 94.375 640 32 4 4332 4968 7645352 7644714 0.000000e+00 979
14 TraesCS2D01G006600 chr2B 86.957 621 69 10 2937 3548 7581795 7581178 0.000000e+00 688
15 TraesCS2D01G006600 chr2B 83.243 555 81 8 4414 4966 8250025 8250569 2.670000e-137 499
16 TraesCS2D01G006600 chr2B 83.002 553 86 6 4414 4966 7814182 7814726 1.240000e-135 494
17 TraesCS2D01G006600 chr2B 84.130 523 41 17 2470 2981 7647326 7646835 7.530000e-128 468
18 TraesCS2D01G006600 chr2B 86.765 408 53 1 3593 4000 7581045 7580639 2.110000e-123 453
19 TraesCS2D01G006600 chr2B 88.889 117 12 1 2435 2551 7597247 7597132 5.180000e-30 143
20 TraesCS2D01G006600 chr5D 93.923 724 41 3 1 722 396441123 396441845 0.000000e+00 1090
21 TraesCS2D01G006600 chr1B 93.204 721 45 4 1 719 334677209 334677927 0.000000e+00 1057
22 TraesCS2D01G006600 chr1B 91.558 154 10 3 718 870 532680810 532680659 5.040000e-50 209
23 TraesCS2D01G006600 chr1B 91.275 149 12 1 718 865 560490275 560490423 8.430000e-48 202
24 TraesCS2D01G006600 chr1B 87.742 155 17 2 718 870 31541677 31541831 3.950000e-41 180
25 TraesCS2D01G006600 chr3D 93.194 720 46 3 1 719 607539145 607538428 0.000000e+00 1055
26 TraesCS2D01G006600 chr3D 91.806 720 58 1 2 720 511886688 511887407 0.000000e+00 1002
27 TraesCS2D01G006600 chr4D 92.808 723 51 1 1 722 107699603 107698881 0.000000e+00 1046
28 TraesCS2D01G006600 chr7D 92.361 720 54 1 1 719 193191521 193192240 0.000000e+00 1024
29 TraesCS2D01G006600 chr7D 92.050 717 56 1 4 719 13317707 13318423 0.000000e+00 1007
30 TraesCS2D01G006600 chr7D 92.199 141 10 1 718 857 8469422 8469562 1.090000e-46 198
31 TraesCS2D01G006600 chr1D 92.361 720 51 4 1 719 118506803 118507519 0.000000e+00 1022
32 TraesCS2D01G006600 chr1D 90.909 154 13 1 718 870 470518527 470518374 6.520000e-49 206
33 TraesCS2D01G006600 chr3B 81.260 635 98 15 4350 4966 796835236 796835867 1.240000e-135 494
34 TraesCS2D01G006600 chr1A 90.196 153 12 3 718 869 536340024 536339874 3.920000e-46 196
35 TraesCS2D01G006600 chr7B 90.714 140 11 2 718 856 713240750 713240888 8.490000e-43 185


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2D01G006600 chr2D 3076088 3081055 4967 False 9175.00 9175 100.00000 1 4968 1 chr2D.!!$F2 4967
1 TraesCS2D01G006600 chr2D 15789328 15790052 724 True 1014.00 1014 92.02200 1 722 1 chr2D.!!$R1 721
2 TraesCS2D01G006600 chr2D 3032517 3033379 862 False 483.50 630 87.32600 3396 4306 2 chr2D.!!$F6 910
3 TraesCS2D01G006600 chr2D 2874354 2874859 505 False 479.00 479 83.85200 4458 4968 1 chr2D.!!$F1 510
4 TraesCS2D01G006600 chr2D 21917087 21917665 578 False 377.00 377 78.81400 4389 4968 1 chr2D.!!$F5 579
5 TraesCS2D01G006600 chr2A 2657980 2661182 3202 True 3768.00 3768 88.00000 883 4135 1 chr2A.!!$R1 3252
6 TraesCS2D01G006600 chr2B 7644714 7648974 4260 True 1256.25 1934 89.22425 883 4968 4 chr2B.!!$R3 4085
7 TraesCS2D01G006600 chr2B 7580639 7581795 1156 True 570.50 688 86.86100 2937 4000 2 chr2B.!!$R2 1063
8 TraesCS2D01G006600 chr2B 8250025 8250569 544 False 499.00 499 83.24300 4414 4966 1 chr2B.!!$F2 552
9 TraesCS2D01G006600 chr2B 7814182 7814726 544 False 494.00 494 83.00200 4414 4966 1 chr2B.!!$F1 552
10 TraesCS2D01G006600 chr5D 396441123 396441845 722 False 1090.00 1090 93.92300 1 722 1 chr5D.!!$F1 721
11 TraesCS2D01G006600 chr1B 334677209 334677927 718 False 1057.00 1057 93.20400 1 719 1 chr1B.!!$F2 718
12 TraesCS2D01G006600 chr3D 607538428 607539145 717 True 1055.00 1055 93.19400 1 719 1 chr3D.!!$R1 718
13 TraesCS2D01G006600 chr3D 511886688 511887407 719 False 1002.00 1002 91.80600 2 720 1 chr3D.!!$F1 718
14 TraesCS2D01G006600 chr4D 107698881 107699603 722 True 1046.00 1046 92.80800 1 722 1 chr4D.!!$R1 721
15 TraesCS2D01G006600 chr7D 193191521 193192240 719 False 1024.00 1024 92.36100 1 719 1 chr7D.!!$F3 718
16 TraesCS2D01G006600 chr7D 13317707 13318423 716 False 1007.00 1007 92.05000 4 719 1 chr7D.!!$F2 715
17 TraesCS2D01G006600 chr1D 118506803 118507519 716 False 1022.00 1022 92.36100 1 719 1 chr1D.!!$F1 718
18 TraesCS2D01G006600 chr3B 796835236 796835867 631 False 494.00 494 81.26000 4350 4966 1 chr3B.!!$F1 616

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
532 539 0.108329 GCTTCGGATCCCACGAGAAA 60.108 55.0 6.06 0.00 41.81 2.52 F
1623 1687 0.267054 ATGCTCTGGATCTGGGAGGA 59.733 55.0 10.40 8.63 32.48 3.71 F
2064 2136 0.035739 GGACCAAGGGTTTCGCTGTA 59.964 55.0 0.00 0.00 35.25 2.74 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1768 1832 0.534203 TCCGAAACCAGAACCAGTGC 60.534 55.0 0.00 0.00 0.00 4.40 R
3402 3604 0.247736 CGGTTCAGCTTAGACTGGCT 59.752 55.0 0.00 0.00 38.26 4.75 R
4002 4301 0.107459 GGTTCCCAGAAGGCTAGCAG 60.107 60.0 18.24 0.23 34.51 4.24 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
230 235 2.281484 GTTGGCTGGAACCGAGCA 60.281 61.111 13.80 2.62 38.27 4.26
390 395 4.457496 CCGCCACCATCTCTGCGT 62.457 66.667 0.00 0.00 45.18 5.24
442 448 4.514577 CGCCGCCGTCCATCTCTT 62.515 66.667 0.00 0.00 0.00 2.85
532 539 0.108329 GCTTCGGATCCCACGAGAAA 60.108 55.000 6.06 0.00 41.81 2.52
573 580 1.194218 TGAGATCTCACCGCATCCAA 58.806 50.000 21.67 0.00 34.14 3.53
664 672 3.073735 CACGAGAGGAGGCCTGCT 61.074 66.667 28.97 28.97 31.76 4.24
735 746 1.686587 GGGGGTAGCAAATTGTATGGC 59.313 52.381 0.00 0.00 0.00 4.40
736 747 2.383855 GGGGTAGCAAATTGTATGGCA 58.616 47.619 0.00 0.00 0.00 4.92
737 748 2.763448 GGGGTAGCAAATTGTATGGCAA 59.237 45.455 0.00 0.00 41.89 4.52
738 749 3.196685 GGGGTAGCAAATTGTATGGCAAA 59.803 43.478 0.00 0.00 40.91 3.68
739 750 4.141733 GGGGTAGCAAATTGTATGGCAAAT 60.142 41.667 0.00 0.00 40.91 2.32
740 751 5.427378 GGGTAGCAAATTGTATGGCAAATT 58.573 37.500 0.00 0.00 40.91 1.82
741 752 6.407525 GGGGTAGCAAATTGTATGGCAAATTA 60.408 38.462 0.00 0.00 40.91 1.40
742 753 7.216494 GGGTAGCAAATTGTATGGCAAATTAT 58.784 34.615 0.00 0.00 40.91 1.28
743 754 8.364142 GGGTAGCAAATTGTATGGCAAATTATA 58.636 33.333 0.00 0.00 40.91 0.98
744 755 9.410556 GGTAGCAAATTGTATGGCAAATTATAG 57.589 33.333 0.00 0.00 40.91 1.31
745 756 7.951530 AGCAAATTGTATGGCAAATTATAGC 57.048 32.000 0.00 0.00 40.91 2.97
746 757 7.729116 AGCAAATTGTATGGCAAATTATAGCT 58.271 30.769 0.00 1.97 40.91 3.32
747 758 7.654520 AGCAAATTGTATGGCAAATTATAGCTG 59.345 33.333 0.00 3.64 40.91 4.24
748 759 7.439056 GCAAATTGTATGGCAAATTATAGCTGT 59.561 33.333 0.00 0.00 40.91 4.40
749 760 9.964303 CAAATTGTATGGCAAATTATAGCTGTA 57.036 29.630 0.00 0.00 40.91 2.74
750 761 9.965824 AAATTGTATGGCAAATTATAGCTGTAC 57.034 29.630 0.00 0.00 40.91 2.90
751 762 7.504924 TTGTATGGCAAATTATAGCTGTACC 57.495 36.000 0.00 0.00 33.53 3.34
752 763 5.699001 TGTATGGCAAATTATAGCTGTACCG 59.301 40.000 0.00 0.00 0.00 4.02
753 764 4.409718 TGGCAAATTATAGCTGTACCGA 57.590 40.909 0.00 0.00 0.00 4.69
754 765 4.377021 TGGCAAATTATAGCTGTACCGAG 58.623 43.478 0.00 0.00 0.00 4.63
755 766 4.141801 TGGCAAATTATAGCTGTACCGAGT 60.142 41.667 0.00 0.00 0.00 4.18
756 767 4.448060 GGCAAATTATAGCTGTACCGAGTC 59.552 45.833 0.00 0.00 0.00 3.36
757 768 5.047847 GCAAATTATAGCTGTACCGAGTCA 58.952 41.667 0.00 0.00 0.00 3.41
758 769 5.696724 GCAAATTATAGCTGTACCGAGTCAT 59.303 40.000 0.00 0.00 0.00 3.06
759 770 6.346919 GCAAATTATAGCTGTACCGAGTCATG 60.347 42.308 0.00 0.00 0.00 3.07
760 771 6.406692 AATTATAGCTGTACCGAGTCATGT 57.593 37.500 0.00 0.00 0.00 3.21
761 772 7.520451 AATTATAGCTGTACCGAGTCATGTA 57.480 36.000 0.00 0.00 0.00 2.29
762 773 4.832590 ATAGCTGTACCGAGTCATGTAC 57.167 45.455 11.29 11.29 38.22 2.90
763 774 2.724454 AGCTGTACCGAGTCATGTACT 58.276 47.619 16.58 0.00 42.80 2.73
764 775 2.423892 AGCTGTACCGAGTCATGTACTG 59.576 50.000 16.58 16.42 39.07 2.74
765 776 2.798680 CTGTACCGAGTCATGTACTGC 58.201 52.381 16.58 0.00 39.07 4.40
766 777 1.131693 TGTACCGAGTCATGTACTGCG 59.868 52.381 16.58 6.44 39.07 5.18
767 778 0.736636 TACCGAGTCATGTACTGCGG 59.263 55.000 20.59 20.59 46.03 5.69
768 779 1.511305 CCGAGTCATGTACTGCGGT 59.489 57.895 2.42 2.42 40.77 5.68
769 780 0.736636 CCGAGTCATGTACTGCGGTA 59.263 55.000 0.00 0.00 40.77 4.02
770 781 1.337071 CCGAGTCATGTACTGCGGTAT 59.663 52.381 9.01 0.00 40.77 2.73
771 782 2.385315 CGAGTCATGTACTGCGGTATG 58.615 52.381 9.01 5.35 39.07 2.39
772 783 2.743938 GAGTCATGTACTGCGGTATGG 58.256 52.381 9.01 1.94 39.07 2.74
773 784 2.361119 GAGTCATGTACTGCGGTATGGA 59.639 50.000 9.01 4.37 39.07 3.41
774 785 2.965831 AGTCATGTACTGCGGTATGGAT 59.034 45.455 9.01 0.00 36.93 3.41
775 786 4.149598 AGTCATGTACTGCGGTATGGATA 58.850 43.478 9.01 0.00 36.93 2.59
776 787 4.587262 AGTCATGTACTGCGGTATGGATAA 59.413 41.667 9.01 0.00 36.93 1.75
777 788 4.923871 GTCATGTACTGCGGTATGGATAAG 59.076 45.833 9.01 0.00 0.00 1.73
778 789 3.380479 TGTACTGCGGTATGGATAAGC 57.620 47.619 9.01 0.00 0.00 3.09
779 790 2.696187 TGTACTGCGGTATGGATAAGCA 59.304 45.455 9.01 0.00 36.34 3.91
783 794 3.044235 TGCGGTATGGATAAGCAGATG 57.956 47.619 0.00 0.00 33.57 2.90
784 795 2.368548 TGCGGTATGGATAAGCAGATGT 59.631 45.455 0.00 0.00 33.57 3.06
785 796 2.996621 GCGGTATGGATAAGCAGATGTC 59.003 50.000 0.00 0.00 0.00 3.06
786 797 3.589988 CGGTATGGATAAGCAGATGTCC 58.410 50.000 0.00 0.00 0.00 4.02
787 798 3.259374 CGGTATGGATAAGCAGATGTCCT 59.741 47.826 0.00 0.00 0.00 3.85
788 799 4.619394 CGGTATGGATAAGCAGATGTCCTC 60.619 50.000 0.00 0.00 0.00 3.71
789 800 4.323104 GGTATGGATAAGCAGATGTCCTCC 60.323 50.000 0.00 0.00 0.00 4.30
790 801 2.763039 TGGATAAGCAGATGTCCTCCA 58.237 47.619 0.00 0.00 0.00 3.86
791 802 3.321039 TGGATAAGCAGATGTCCTCCAT 58.679 45.455 0.00 0.00 36.13 3.41
792 803 4.492646 TGGATAAGCAGATGTCCTCCATA 58.507 43.478 0.00 0.00 32.56 2.74
793 804 5.096521 TGGATAAGCAGATGTCCTCCATAT 58.903 41.667 0.00 0.00 32.56 1.78
794 805 5.549228 TGGATAAGCAGATGTCCTCCATATT 59.451 40.000 0.00 0.00 32.56 1.28
795 806 5.879223 GGATAAGCAGATGTCCTCCATATTG 59.121 44.000 0.00 0.00 32.56 1.90
796 807 4.785346 AAGCAGATGTCCTCCATATTGT 57.215 40.909 0.00 0.00 32.56 2.71
797 808 4.082665 AGCAGATGTCCTCCATATTGTG 57.917 45.455 0.00 0.00 32.56 3.33
798 809 3.713248 AGCAGATGTCCTCCATATTGTGA 59.287 43.478 0.00 0.00 32.56 3.58
799 810 4.063689 GCAGATGTCCTCCATATTGTGAG 58.936 47.826 0.00 0.00 32.56 3.51
800 811 4.639334 CAGATGTCCTCCATATTGTGAGG 58.361 47.826 6.42 6.42 32.56 3.86
801 812 4.346127 CAGATGTCCTCCATATTGTGAGGA 59.654 45.833 10.13 10.13 41.11 3.71
808 819 6.830912 TCCTCCATATTGTGAGGACTTATTG 58.169 40.000 10.13 0.00 38.76 1.90
809 820 5.471456 CCTCCATATTGTGAGGACTTATTGC 59.529 44.000 6.81 0.00 36.99 3.56
810 821 6.000246 TCCATATTGTGAGGACTTATTGCA 58.000 37.500 0.00 0.00 0.00 4.08
811 822 6.604171 TCCATATTGTGAGGACTTATTGCAT 58.396 36.000 0.00 0.00 0.00 3.96
812 823 6.712095 TCCATATTGTGAGGACTTATTGCATC 59.288 38.462 0.00 0.00 0.00 3.91
813 824 6.713903 CCATATTGTGAGGACTTATTGCATCT 59.286 38.462 0.00 0.00 0.00 2.90
814 825 7.094890 CCATATTGTGAGGACTTATTGCATCTC 60.095 40.741 0.00 0.00 0.00 2.75
815 826 3.785486 TGTGAGGACTTATTGCATCTCG 58.215 45.455 0.00 0.00 0.00 4.04
816 827 3.447229 TGTGAGGACTTATTGCATCTCGA 59.553 43.478 0.00 0.00 0.00 4.04
817 828 4.081697 TGTGAGGACTTATTGCATCTCGAA 60.082 41.667 0.00 0.00 0.00 3.71
818 829 5.053145 GTGAGGACTTATTGCATCTCGAAT 58.947 41.667 0.00 0.00 0.00 3.34
819 830 5.050499 GTGAGGACTTATTGCATCTCGAATG 60.050 44.000 0.00 0.00 0.00 2.67
820 831 5.028549 AGGACTTATTGCATCTCGAATGT 57.971 39.130 0.00 0.00 0.00 2.71
821 832 6.161855 AGGACTTATTGCATCTCGAATGTA 57.838 37.500 0.00 3.00 0.00 2.29
822 833 6.582636 AGGACTTATTGCATCTCGAATGTAA 58.417 36.000 11.27 11.27 0.00 2.41
823 834 6.480320 AGGACTTATTGCATCTCGAATGTAAC 59.520 38.462 11.16 2.53 0.00 2.50
824 835 6.480320 GGACTTATTGCATCTCGAATGTAACT 59.520 38.462 11.16 6.20 0.00 2.24
825 836 7.306866 GGACTTATTGCATCTCGAATGTAACTC 60.307 40.741 11.16 6.23 0.00 3.01
826 837 6.199154 ACTTATTGCATCTCGAATGTAACTCG 59.801 38.462 11.16 0.00 0.00 4.18
827 838 3.503827 TGCATCTCGAATGTAACTCGT 57.496 42.857 8.64 0.00 0.00 4.18
828 839 3.179048 TGCATCTCGAATGTAACTCGTG 58.821 45.455 8.64 0.00 0.00 4.35
829 840 3.119637 TGCATCTCGAATGTAACTCGTGA 60.120 43.478 8.64 0.26 34.67 4.35
830 841 3.240861 GCATCTCGAATGTAACTCGTGAC 59.759 47.826 8.64 0.00 33.36 3.67
831 842 4.663166 CATCTCGAATGTAACTCGTGACT 58.337 43.478 0.00 0.00 33.36 3.41
832 843 4.761235 TCTCGAATGTAACTCGTGACTT 57.239 40.909 0.00 0.00 0.00 3.01
833 844 5.117355 TCTCGAATGTAACTCGTGACTTT 57.883 39.130 0.00 0.00 0.00 2.66
834 845 4.915667 TCTCGAATGTAACTCGTGACTTTG 59.084 41.667 0.00 0.00 0.00 2.77
835 846 3.985279 TCGAATGTAACTCGTGACTTTGG 59.015 43.478 0.00 0.00 0.00 3.28
836 847 3.985279 CGAATGTAACTCGTGACTTTGGA 59.015 43.478 0.00 0.00 0.00 3.53
837 848 4.446385 CGAATGTAACTCGTGACTTTGGAA 59.554 41.667 0.00 0.00 0.00 3.53
838 849 5.120208 CGAATGTAACTCGTGACTTTGGAAT 59.880 40.000 0.00 0.00 0.00 3.01
839 850 6.309494 CGAATGTAACTCGTGACTTTGGAATA 59.691 38.462 0.00 0.00 0.00 1.75
840 851 7.148705 CGAATGTAACTCGTGACTTTGGAATAA 60.149 37.037 0.00 0.00 0.00 1.40
841 852 7.972832 ATGTAACTCGTGACTTTGGAATAAA 57.027 32.000 0.00 0.00 0.00 1.40
842 853 7.789273 TGTAACTCGTGACTTTGGAATAAAA 57.211 32.000 0.00 0.00 0.00 1.52
843 854 8.385898 TGTAACTCGTGACTTTGGAATAAAAT 57.614 30.769 0.00 0.00 0.00 1.82
844 855 8.842280 TGTAACTCGTGACTTTGGAATAAAATT 58.158 29.630 0.00 0.00 0.00 1.82
845 856 9.673454 GTAACTCGTGACTTTGGAATAAAATTT 57.327 29.630 0.00 0.00 0.00 1.82
846 857 8.797266 AACTCGTGACTTTGGAATAAAATTTC 57.203 30.769 0.00 0.00 0.00 2.17
847 858 7.368059 ACTCGTGACTTTGGAATAAAATTTCC 58.632 34.615 0.00 0.00 44.60 3.13
848 859 6.375377 TCGTGACTTTGGAATAAAATTTCCG 58.625 36.000 0.00 0.00 46.85 4.30
849 860 6.016943 TCGTGACTTTGGAATAAAATTTCCGT 60.017 34.615 0.00 0.00 46.85 4.69
850 861 7.172875 TCGTGACTTTGGAATAAAATTTCCGTA 59.827 33.333 0.00 0.00 46.85 4.02
851 862 7.966204 CGTGACTTTGGAATAAAATTTCCGTAT 59.034 33.333 0.00 0.00 46.85 3.06
852 863 9.634163 GTGACTTTGGAATAAAATTTCCGTATT 57.366 29.630 0.00 0.00 46.85 1.89
858 869 9.953697 TTGGAATAAAATTTCCGTATTATTCGG 57.046 29.630 3.83 3.83 46.85 4.30
859 870 8.569641 TGGAATAAAATTTCCGTATTATTCGGG 58.430 33.333 10.22 0.00 46.85 5.14
860 871 8.785946 GGAATAAAATTTCCGTATTATTCGGGA 58.214 33.333 10.22 0.00 46.82 5.14
865 876 8.692110 AAATTTCCGTATTATTCGGGAAAAAC 57.308 30.769 8.02 0.00 46.84 2.43
866 877 6.814506 TTTCCGTATTATTCGGGAAAAACA 57.185 33.333 10.22 0.00 46.82 2.83
867 878 6.814506 TTCCGTATTATTCGGGAAAAACAA 57.185 33.333 10.22 0.00 46.82 2.83
868 879 6.814506 TCCGTATTATTCGGGAAAAACAAA 57.185 33.333 10.22 0.00 46.82 2.83
869 880 7.211966 TCCGTATTATTCGGGAAAAACAAAA 57.788 32.000 10.22 0.00 46.82 2.44
870 881 7.083230 TCCGTATTATTCGGGAAAAACAAAAC 58.917 34.615 10.22 0.00 46.82 2.43
871 882 7.040548 TCCGTATTATTCGGGAAAAACAAAACT 60.041 33.333 10.22 0.00 46.82 2.66
872 883 7.061326 CCGTATTATTCGGGAAAAACAAAACTG 59.939 37.037 2.22 0.00 43.68 3.16
873 884 6.779115 ATTATTCGGGAAAAACAAAACTGC 57.221 33.333 0.00 0.00 0.00 4.40
874 885 2.588027 TCGGGAAAAACAAAACTGCC 57.412 45.000 0.00 0.00 0.00 4.85
875 886 1.825474 TCGGGAAAAACAAAACTGCCA 59.175 42.857 0.00 0.00 0.00 4.92
876 887 2.432510 TCGGGAAAAACAAAACTGCCAT 59.567 40.909 0.00 0.00 0.00 4.40
877 888 2.799978 CGGGAAAAACAAAACTGCCATC 59.200 45.455 0.00 0.00 0.00 3.51
878 889 3.739519 CGGGAAAAACAAAACTGCCATCA 60.740 43.478 0.00 0.00 0.00 3.07
879 890 4.195416 GGGAAAAACAAAACTGCCATCAA 58.805 39.130 0.00 0.00 0.00 2.57
880 891 4.821260 GGGAAAAACAAAACTGCCATCAAT 59.179 37.500 0.00 0.00 0.00 2.57
881 892 5.049474 GGGAAAAACAAAACTGCCATCAATC 60.049 40.000 0.00 0.00 0.00 2.67
897 908 1.169661 AATCCTGACGCGGCAAAACA 61.170 50.000 19.01 0.00 0.00 2.83
902 913 0.584396 TGACGCGGCAAAACAGTAAG 59.416 50.000 15.11 0.00 0.00 2.34
908 919 3.369756 CGCGGCAAAACAGTAAGAATAGA 59.630 43.478 0.00 0.00 0.00 1.98
919 930 6.556212 ACAGTAAGAATAGATGACGTGTCTG 58.444 40.000 9.66 0.00 0.00 3.51
920 931 6.151312 ACAGTAAGAATAGATGACGTGTCTGT 59.849 38.462 9.66 1.47 0.00 3.41
956 967 8.610248 TTTTACTTGTTCGATGACAAATAGGA 57.390 30.769 4.37 0.00 38.90 2.94
995 1006 7.475771 AGAAGCGATTTTTATCTCTGCTTAG 57.524 36.000 0.00 0.00 40.89 2.18
997 1008 7.437862 AGAAGCGATTTTTATCTCTGCTTAGAG 59.562 37.037 0.00 0.00 40.89 2.43
1000 1011 7.766278 AGCGATTTTTATCTCTGCTTAGAGAAA 59.234 33.333 10.68 6.28 46.52 2.52
1001 1012 8.555361 GCGATTTTTATCTCTGCTTAGAGAAAT 58.445 33.333 10.68 6.43 46.52 2.17
1002 1013 9.861138 CGATTTTTATCTCTGCTTAGAGAAATG 57.139 33.333 10.68 0.43 46.52 2.32
1004 1015 9.911788 ATTTTTATCTCTGCTTAGAGAAATGGA 57.088 29.630 10.68 0.00 46.52 3.41
1017 1029 4.067896 GAGAAATGGACAACAAGAGAGCA 58.932 43.478 0.00 0.00 0.00 4.26
1019 1031 4.699257 AGAAATGGACAACAAGAGAGCATC 59.301 41.667 0.00 0.00 0.00 3.91
1040 1054 0.745845 CCTGCCACCTTCCTCGATTG 60.746 60.000 0.00 0.00 0.00 2.67
1350 1410 1.749638 CGTCTACTCGCTCCCCACT 60.750 63.158 0.00 0.00 0.00 4.00
1366 1426 2.227194 CCACTGGGTAACTGACAAACC 58.773 52.381 0.00 0.00 0.00 3.27
1370 1430 3.053917 ACTGGGTAACTGACAAACCAACT 60.054 43.478 4.26 0.00 34.83 3.16
1457 1518 5.642919 AGATGAGTTCTTCAGTCAATTCAGC 59.357 40.000 0.00 0.00 38.41 4.26
1510 1574 4.700692 AGTGAGTGTCGTGAGCTAGATTTA 59.299 41.667 0.00 0.00 0.00 1.40
1526 1590 9.007901 AGCTAGATTTAATCTGGTTATGAATGC 57.992 33.333 16.86 6.15 39.75 3.56
1568 1632 6.275494 ACATGAATTGATTTCTGCATCACA 57.725 33.333 0.00 0.00 32.68 3.58
1623 1687 0.267054 ATGCTCTGGATCTGGGAGGA 59.733 55.000 10.40 8.63 32.48 3.71
1710 1774 2.151202 GAGCAAGTGTCGATCCCAAAA 58.849 47.619 0.00 0.00 0.00 2.44
1754 1818 3.694566 GAGGTAGCCGGTTCATTGATTTT 59.305 43.478 1.90 0.00 0.00 1.82
1780 1848 3.070018 CTGTCTTAAGCACTGGTTCTGG 58.930 50.000 0.00 0.00 0.00 3.86
1785 1853 1.308998 AAGCACTGGTTCTGGTTTCG 58.691 50.000 0.00 0.00 0.00 3.46
1793 1861 3.821033 CTGGTTCTGGTTTCGGAAAGAAT 59.179 43.478 2.85 0.00 39.70 2.40
1795 1863 3.568430 GGTTCTGGTTTCGGAAAGAATGT 59.432 43.478 2.85 0.00 39.70 2.71
1797 1865 4.829064 TCTGGTTTCGGAAAGAATGTTG 57.171 40.909 2.85 0.00 38.86 3.33
1802 1870 4.295870 GTTTCGGAAAGAATGTTGGGTTC 58.704 43.478 2.85 0.00 38.86 3.62
1805 1873 4.575885 TCGGAAAGAATGTTGGGTTCTAG 58.424 43.478 0.00 0.00 34.97 2.43
1806 1874 4.041198 TCGGAAAGAATGTTGGGTTCTAGT 59.959 41.667 0.00 0.00 34.97 2.57
1808 1876 5.313712 GGAAAGAATGTTGGGTTCTAGTGA 58.686 41.667 0.00 0.00 34.97 3.41
1812 1880 8.567285 AAAGAATGTTGGGTTCTAGTGATAAG 57.433 34.615 0.00 0.00 34.97 1.73
1813 1881 6.653989 AGAATGTTGGGTTCTAGTGATAAGG 58.346 40.000 0.00 0.00 34.32 2.69
1814 1882 6.443849 AGAATGTTGGGTTCTAGTGATAAGGA 59.556 38.462 0.00 0.00 34.32 3.36
1815 1883 5.416271 TGTTGGGTTCTAGTGATAAGGAC 57.584 43.478 0.00 0.00 0.00 3.85
1828 1900 9.743057 CTAGTGATAAGGACATTAGCATATAGC 57.257 37.037 0.74 0.00 41.53 2.97
1843 1915 6.738832 GCATATAGCTGCATATGGATATGG 57.261 41.667 22.04 0.00 41.87 2.74
1844 1916 6.470278 GCATATAGCTGCATATGGATATGGA 58.530 40.000 22.04 5.01 41.87 3.41
1849 1921 4.473922 AGCTGCATATGGATATGGACAGAT 59.526 41.667 4.56 8.06 40.31 2.90
1963 2035 6.139679 AGGGTGGTAATTTTCATCTTCAGA 57.860 37.500 0.00 0.00 0.00 3.27
1968 2040 7.039714 GGTGGTAATTTTCATCTTCAGAAAGGT 60.040 37.037 0.00 0.00 36.45 3.50
1992 2064 5.046159 TCGAAAAAGGGAGATAGGCTTTACA 60.046 40.000 0.00 0.00 0.00 2.41
2031 2103 2.166664 GCAGACTTCTATTGACTCGGGT 59.833 50.000 0.00 0.00 0.00 5.28
2058 2130 2.358322 TCAAGTGGACCAAGGGTTTC 57.642 50.000 0.00 0.00 35.25 2.78
2064 2136 0.035739 GGACCAAGGGTTTCGCTGTA 59.964 55.000 0.00 0.00 35.25 2.74
2085 2157 6.338146 TGTATCTGGGACTGTAAGATTTTCG 58.662 40.000 5.70 0.00 37.43 3.46
2097 2169 7.064253 ACTGTAAGATTTTCGTTTCCCGAATAG 59.936 37.037 0.00 0.00 46.53 1.73
2098 2170 7.064253 CTGTAAGATTTTCGTTTCCCGAATAGT 59.936 37.037 0.00 0.00 46.69 2.12
2114 2187 8.889717 TCCCGAATAGTACAATTTTCTCATTTC 58.110 33.333 0.00 0.00 0.00 2.17
2327 2400 1.895707 GAATGCCGCCATGGAGAGG 60.896 63.158 18.40 16.13 42.00 3.69
2348 2421 0.037303 AGGGGCTTGACATGAGTGTG 59.963 55.000 0.00 0.00 39.09 3.82
2430 2507 1.402968 CATTGCCTTCCGGATTCTGTG 59.597 52.381 4.15 0.00 0.00 3.66
2444 2521 0.865111 TCTGTGTCGGAAAATGCACG 59.135 50.000 0.00 0.00 34.86 5.34
2563 2673 1.474077 GGGCTGAAATGCGTCTGAAAT 59.526 47.619 0.00 0.00 0.00 2.17
2564 2674 2.523015 GGCTGAAATGCGTCTGAAATG 58.477 47.619 0.00 0.00 0.00 2.32
2588 2698 9.466497 ATGACATCATTTCACATAAAAGGTACT 57.534 29.630 0.00 0.00 33.53 2.73
2737 2847 1.734465 GCTTGCTACATTGAGCGAACT 59.266 47.619 0.00 0.00 45.99 3.01
2738 2848 2.930040 GCTTGCTACATTGAGCGAACTA 59.070 45.455 0.00 0.00 45.99 2.24
2802 2912 1.135972 CACGGTATGCTGCAACAAGAC 60.136 52.381 6.36 0.00 0.00 3.01
2808 2918 2.268762 TGCTGCAACAAGACCACATA 57.731 45.000 0.00 0.00 0.00 2.29
2822 2932 9.975218 ACAAGACCACATATTTTATTTACTCCT 57.025 29.630 0.00 0.00 0.00 3.69
2839 2949 9.877178 ATTTACTCCTTATACTGAACTGAAGTG 57.123 33.333 0.00 0.00 0.00 3.16
2840 2950 8.645814 TTACTCCTTATACTGAACTGAAGTGA 57.354 34.615 0.00 0.00 0.00 3.41
2841 2951 7.540474 ACTCCTTATACTGAACTGAAGTGAA 57.460 36.000 0.00 0.00 0.00 3.18
2842 2952 7.379750 ACTCCTTATACTGAACTGAAGTGAAC 58.620 38.462 0.00 0.00 0.00 3.18
2843 2953 7.015292 ACTCCTTATACTGAACTGAAGTGAACA 59.985 37.037 0.00 0.00 0.00 3.18
2844 2954 7.732025 TCCTTATACTGAACTGAAGTGAACAA 58.268 34.615 0.00 0.00 0.00 2.83
2845 2955 8.208224 TCCTTATACTGAACTGAAGTGAACAAA 58.792 33.333 0.00 0.00 0.00 2.83
2850 2960 5.126061 ACTGAACTGAAGTGAACAAAATGCT 59.874 36.000 0.00 0.00 0.00 3.79
2852 2962 6.397272 TGAACTGAAGTGAACAAAATGCTTT 58.603 32.000 0.00 0.00 0.00 3.51
2875 2985 3.120338 CCATTTCAATGCTGCTTTGCAAG 60.120 43.478 19.89 11.10 46.61 4.01
2877 2987 2.717580 TCAATGCTGCTTTGCAAGAG 57.282 45.000 19.89 1.78 46.61 2.85
2932 3052 6.933514 TTTTAGGAAAAGGAGGCATGAATT 57.066 33.333 0.00 0.00 0.00 2.17
2985 3105 2.042464 TGAGTCACTGCAGGAAGTTCT 58.958 47.619 19.93 7.20 0.00 3.01
2992 3112 1.538950 CTGCAGGAAGTTCTTTGCTCC 59.461 52.381 23.63 1.44 34.95 4.70
2999 3119 4.695928 AGGAAGTTCTTTGCTCCGAATAAC 59.304 41.667 2.25 0.00 30.83 1.89
3009 3129 7.987458 TCTTTGCTCCGAATAACAGAATAGATT 59.013 33.333 0.00 0.00 0.00 2.40
3162 3355 5.215160 CAACTTTGTTTTGCTCGCTTATCT 58.785 37.500 0.00 0.00 0.00 1.98
3163 3356 5.035784 ACTTTGTTTTGCTCGCTTATCTC 57.964 39.130 0.00 0.00 0.00 2.75
3175 3368 5.407995 GCTCGCTTATCTCTTCATATGCTTT 59.592 40.000 0.00 0.00 30.63 3.51
3176 3369 6.618166 GCTCGCTTATCTCTTCATATGCTTTG 60.618 42.308 0.00 0.00 30.63 2.77
3190 3389 2.144730 TGCTTTGTTTTGATGGCATGC 58.855 42.857 9.90 9.90 0.00 4.06
3195 3394 2.241160 TGTTTTGATGGCATGCTCTGT 58.759 42.857 18.92 0.74 0.00 3.41
3265 3464 2.084546 GAGAAATTGTTCGGAGGGTGG 58.915 52.381 0.00 0.00 38.90 4.61
3306 3505 2.229062 GTCTGATCTGTTCGGTCACTCA 59.771 50.000 0.00 0.00 32.10 3.41
3309 3508 3.588955 TGATCTGTTCGGTCACTCATTG 58.411 45.455 0.00 0.00 0.00 2.82
3315 3514 0.904649 TCGGTCACTCATTGGCTGAT 59.095 50.000 0.00 0.00 40.51 2.90
3349 3549 4.237724 GCCATTTGTTCTAAGGCAAGTTC 58.762 43.478 0.00 0.00 44.59 3.01
3351 3552 5.509670 GCCATTTGTTCTAAGGCAAGTTCTT 60.510 40.000 0.00 0.00 44.59 2.52
3354 3555 6.959639 TTTGTTCTAAGGCAAGTTCTTCAT 57.040 33.333 0.00 0.00 0.00 2.57
3358 3559 6.017109 TGTTCTAAGGCAAGTTCTTCATGTTC 60.017 38.462 0.00 0.00 0.00 3.18
3359 3560 5.003804 TCTAAGGCAAGTTCTTCATGTTCC 58.996 41.667 0.00 0.00 0.00 3.62
3364 3565 3.753272 GCAAGTTCTTCATGTTCCAGCTA 59.247 43.478 0.00 0.00 0.00 3.32
3370 3571 3.582647 TCTTCATGTTCCAGCTACCAGAA 59.417 43.478 0.00 0.00 0.00 3.02
3384 3586 7.453393 CAGCTACCAGAATCCAAATTATCCTA 58.547 38.462 0.00 0.00 0.00 2.94
3387 3589 9.301897 GCTACCAGAATCCAAATTATCCTATTT 57.698 33.333 0.00 0.00 0.00 1.40
3407 3609 8.186821 CCTATTTCTTTCACATTTTCTAGCCAG 58.813 37.037 0.00 0.00 0.00 4.85
3477 3679 3.394674 TGCAACAAGATAACTCCGACA 57.605 42.857 0.00 0.00 0.00 4.35
3486 3688 5.012328 AGATAACTCCGACAATCTTGGAC 57.988 43.478 0.00 0.00 0.00 4.02
3511 3713 2.315011 TGAATCAATTTTGCGCGACAC 58.685 42.857 12.10 0.00 0.00 3.67
3542 3744 7.345943 GTGTAAGTTTCTACACTTCTTTCAGC 58.654 38.462 6.64 0.00 45.45 4.26
3547 3845 6.651225 AGTTTCTACACTTCTTTCAGCCATAC 59.349 38.462 0.00 0.00 0.00 2.39
3579 3878 2.712087 AGCCAGCTAGCTAGTAGGAGTA 59.288 50.000 27.49 0.00 42.70 2.59
3581 3880 3.414269 CCAGCTAGCTAGTAGGAGTACC 58.586 54.545 18.86 2.10 0.00 3.34
3605 3904 5.076182 TGACATGCAGTTTTCTCCCATAAA 58.924 37.500 0.00 0.00 0.00 1.40
3606 3905 5.538053 TGACATGCAGTTTTCTCCCATAAAA 59.462 36.000 0.00 0.00 0.00 1.52
3621 3920 4.497300 CCATAAAAATGGTTGCAGGTCAG 58.503 43.478 0.00 0.00 36.95 3.51
3637 3936 2.355108 GGTCAGCCAATCTTCTGTAGCA 60.355 50.000 0.00 0.00 34.09 3.49
3649 3948 1.071605 CTGTAGCAGCACGAAGGTTC 58.928 55.000 0.00 0.00 0.00 3.62
3670 3969 5.068234 TCATCGTAGAAGTTTCCGATTGT 57.932 39.130 4.12 0.00 43.58 2.71
3671 3970 4.862574 TCATCGTAGAAGTTTCCGATTGTG 59.137 41.667 4.12 0.00 43.58 3.33
3689 3988 2.035155 TCGTCAAGAGAGGCGGGA 59.965 61.111 0.00 0.00 0.00 5.14
3691 3990 2.046864 CGTCAAGAGAGGCGGGAGA 61.047 63.158 0.00 0.00 0.00 3.71
3697 3996 3.798954 GAGAGGCGGGAGATTGGCG 62.799 68.421 0.00 0.00 35.52 5.69
3766 4065 2.969262 GGGACTGATCTTAGGGAGAAGG 59.031 54.545 0.00 0.00 38.06 3.46
3820 4119 4.684724 AGAATTACCCTCAGTACAGGTCA 58.315 43.478 0.00 0.00 35.02 4.02
3875 4174 1.221566 CGGGACATGGAGCACATCA 59.778 57.895 0.00 0.00 37.84 3.07
4012 4311 2.575805 AAGAGTTTGCTGCTAGCCTT 57.424 45.000 13.29 2.40 41.51 4.35
4015 4314 1.736681 GAGTTTGCTGCTAGCCTTCTG 59.263 52.381 13.29 0.00 41.51 3.02
4035 4364 3.777075 AACCTTGGGTGGGTTCCA 58.223 55.556 0.00 0.00 42.69 3.53
4066 4395 2.158957 TCCCGTGCTCAGGAACATATTC 60.159 50.000 0.00 0.00 0.00 1.75
4067 4396 2.419990 CCCGTGCTCAGGAACATATTCA 60.420 50.000 0.00 0.00 36.46 2.57
4068 4397 2.609459 CCGTGCTCAGGAACATATTCAC 59.391 50.000 0.00 0.00 36.46 3.18
4069 4398 3.261580 CGTGCTCAGGAACATATTCACA 58.738 45.455 0.00 0.00 36.46 3.58
4076 4406 5.351458 TCAGGAACATATTCACATCGACAG 58.649 41.667 0.00 0.00 36.46 3.51
4081 4411 6.019479 GGAACATATTCACATCGACAGAACTC 60.019 42.308 0.00 0.00 36.46 3.01
4089 4419 4.097135 CACATCGACAGAACTCAGAGGTAT 59.903 45.833 1.53 0.00 0.00 2.73
4172 4502 9.263446 AGATTACCTGTTAGTATTGGACTGTAA 57.737 33.333 0.00 0.00 39.39 2.41
4181 4511 9.227777 GTTAGTATTGGACTGTAAAATCTGGTT 57.772 33.333 0.00 0.00 39.39 3.67
4185 4515 9.005777 GTATTGGACTGTAAAATCTGGTTTGTA 57.994 33.333 0.00 0.00 0.00 2.41
4282 4613 9.661187 CTCAAATATCTGAATGAAATACACAGC 57.339 33.333 0.00 0.00 0.00 4.40
4296 4628 2.874849 ACACAGCAACTTTTTCCAACG 58.125 42.857 0.00 0.00 0.00 4.10
4310 4642 4.822036 TTCCAACGAATTACACTTGGTG 57.178 40.909 0.00 0.00 39.75 4.17
4482 4909 9.371136 CAATGTTTGTAGTGAGCTTCTCTTATA 57.629 33.333 0.00 0.00 0.00 0.98
4510 4938 4.944930 TGCATAAAGGTACAACCATACACC 59.055 41.667 0.00 0.00 41.95 4.16
4512 4940 2.773993 AAGGTACAACCATACACCGG 57.226 50.000 0.00 0.00 41.95 5.28
4560 4993 6.426937 GCTGAAAGTGTAGGTAACTTGAATCA 59.573 38.462 0.00 0.00 40.35 2.57
4570 5003 4.454504 GGTAACTTGAATCACCACGTGAAT 59.545 41.667 19.30 4.61 45.96 2.57
4571 5004 5.640357 GGTAACTTGAATCACCACGTGAATA 59.360 40.000 19.30 1.14 45.96 1.75
4572 5005 6.315393 GGTAACTTGAATCACCACGTGAATAT 59.685 38.462 19.30 3.80 45.96 1.28
4573 5006 5.801350 ACTTGAATCACCACGTGAATATG 57.199 39.130 19.30 9.78 45.96 1.78
4576 5009 5.544136 TGAATCACCACGTGAATATGTTG 57.456 39.130 19.30 0.00 45.96 3.33
4861 5296 3.117512 AGTTCACTTGGGTGTCCTCAAAT 60.118 43.478 0.00 0.00 43.41 2.32
4899 5334 4.144297 TCTCCAGGATTGTTCCAGTTTTG 58.856 43.478 0.00 0.00 45.30 2.44
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
7 8 1.035932 TCGATGTCGTTCTCCCTCCC 61.036 60.000 2.04 0.00 40.80 4.30
145 148 3.780173 TCATGGCGGACGATGGCA 61.780 61.111 0.00 0.00 46.52 4.92
230 235 1.877367 GTCTTCGTGGCGAGACTCT 59.123 57.895 0.03 0.00 37.14 3.24
350 355 1.296715 GACTGCGGATCCAACACCT 59.703 57.895 13.41 0.00 0.00 4.00
390 395 2.125326 CGACGGGGTGCCTGATCTA 61.125 63.158 0.00 0.00 33.36 1.98
722 733 7.439056 ACAGCTATAATTTGCCATACAATTTGC 59.561 33.333 0.00 0.00 38.31 3.68
723 734 8.876275 ACAGCTATAATTTGCCATACAATTTG 57.124 30.769 0.00 0.00 38.31 2.32
724 735 9.965824 GTACAGCTATAATTTGCCATACAATTT 57.034 29.630 0.00 0.00 38.31 1.82
725 736 8.576442 GGTACAGCTATAATTTGCCATACAATT 58.424 33.333 0.00 0.00 38.31 2.32
726 737 7.094805 CGGTACAGCTATAATTTGCCATACAAT 60.095 37.037 0.00 0.00 38.31 2.71
727 738 6.203915 CGGTACAGCTATAATTTGCCATACAA 59.796 38.462 0.00 0.00 36.13 2.41
728 739 5.699001 CGGTACAGCTATAATTTGCCATACA 59.301 40.000 0.00 0.00 0.00 2.29
729 740 5.929992 TCGGTACAGCTATAATTTGCCATAC 59.070 40.000 0.00 0.00 0.00 2.39
730 741 6.104146 TCGGTACAGCTATAATTTGCCATA 57.896 37.500 0.00 0.00 0.00 2.74
731 742 4.968259 TCGGTACAGCTATAATTTGCCAT 58.032 39.130 0.00 0.00 0.00 4.40
732 743 4.141801 ACTCGGTACAGCTATAATTTGCCA 60.142 41.667 0.00 0.00 0.00 4.92
733 744 4.377897 ACTCGGTACAGCTATAATTTGCC 58.622 43.478 0.00 0.00 0.00 4.52
734 745 5.047847 TGACTCGGTACAGCTATAATTTGC 58.952 41.667 0.00 0.00 0.00 3.68
735 746 6.701841 ACATGACTCGGTACAGCTATAATTTG 59.298 38.462 0.00 0.00 0.00 2.32
736 747 6.817184 ACATGACTCGGTACAGCTATAATTT 58.183 36.000 0.00 0.00 0.00 1.82
737 748 6.406692 ACATGACTCGGTACAGCTATAATT 57.593 37.500 0.00 0.00 0.00 1.40
738 749 6.715718 AGTACATGACTCGGTACAGCTATAAT 59.284 38.462 0.00 0.00 41.74 1.28
739 750 6.017357 CAGTACATGACTCGGTACAGCTATAA 60.017 42.308 0.00 0.00 41.74 0.98
740 751 5.469084 CAGTACATGACTCGGTACAGCTATA 59.531 44.000 0.00 0.00 41.74 1.31
741 752 4.276183 CAGTACATGACTCGGTACAGCTAT 59.724 45.833 0.00 0.00 41.74 2.97
742 753 3.626217 CAGTACATGACTCGGTACAGCTA 59.374 47.826 0.00 0.00 41.74 3.32
743 754 2.423892 CAGTACATGACTCGGTACAGCT 59.576 50.000 0.00 0.00 41.74 4.24
744 755 2.798680 CAGTACATGACTCGGTACAGC 58.201 52.381 0.00 0.00 41.74 4.40
745 756 2.791503 CGCAGTACATGACTCGGTACAG 60.792 54.545 0.00 0.00 41.74 2.74
746 757 1.131693 CGCAGTACATGACTCGGTACA 59.868 52.381 0.00 0.00 41.74 2.90
747 758 1.533338 CCGCAGTACATGACTCGGTAC 60.533 57.143 0.00 0.00 40.78 3.34
748 759 0.736636 CCGCAGTACATGACTCGGTA 59.263 55.000 0.00 0.00 40.78 4.02
749 760 1.511305 CCGCAGTACATGACTCGGT 59.489 57.895 0.00 0.00 40.78 4.69
750 761 0.736636 TACCGCAGTACATGACTCGG 59.263 55.000 20.59 20.59 46.09 4.63
751 762 2.385315 CATACCGCAGTACATGACTCG 58.615 52.381 0.00 5.24 35.64 4.18
752 763 2.361119 TCCATACCGCAGTACATGACTC 59.639 50.000 0.00 0.00 35.64 3.36
753 764 2.384828 TCCATACCGCAGTACATGACT 58.615 47.619 0.00 0.00 39.82 3.41
754 765 2.882927 TCCATACCGCAGTACATGAC 57.117 50.000 0.00 0.00 0.00 3.06
755 766 4.560716 GCTTATCCATACCGCAGTACATGA 60.561 45.833 0.00 0.00 0.00 3.07
756 767 3.679980 GCTTATCCATACCGCAGTACATG 59.320 47.826 0.00 0.00 0.00 3.21
757 768 3.323691 TGCTTATCCATACCGCAGTACAT 59.676 43.478 0.00 0.00 0.00 2.29
758 769 2.696187 TGCTTATCCATACCGCAGTACA 59.304 45.455 0.00 0.00 0.00 2.90
759 770 3.005472 TCTGCTTATCCATACCGCAGTAC 59.995 47.826 9.09 0.00 46.00 2.73
760 771 3.227614 TCTGCTTATCCATACCGCAGTA 58.772 45.455 9.09 0.00 46.00 2.74
761 772 2.039418 TCTGCTTATCCATACCGCAGT 58.961 47.619 9.09 0.00 46.00 4.40
762 773 2.820059 TCTGCTTATCCATACCGCAG 57.180 50.000 0.00 0.00 46.94 5.18
763 774 2.368548 ACATCTGCTTATCCATACCGCA 59.631 45.455 0.00 0.00 0.00 5.69
764 775 2.996621 GACATCTGCTTATCCATACCGC 59.003 50.000 0.00 0.00 0.00 5.68
765 776 3.259374 AGGACATCTGCTTATCCATACCG 59.741 47.826 0.00 0.00 33.33 4.02
766 777 4.323104 GGAGGACATCTGCTTATCCATACC 60.323 50.000 0.00 0.00 33.33 2.73
767 778 4.284490 TGGAGGACATCTGCTTATCCATAC 59.716 45.833 0.00 0.00 34.66 2.39
768 779 4.492646 TGGAGGACATCTGCTTATCCATA 58.507 43.478 0.00 0.00 34.66 2.74
769 780 3.321039 TGGAGGACATCTGCTTATCCAT 58.679 45.455 0.00 0.00 34.66 3.41
770 781 2.763039 TGGAGGACATCTGCTTATCCA 58.237 47.619 0.00 0.00 34.66 3.41
771 782 5.690464 ATATGGAGGACATCTGCTTATCC 57.310 43.478 0.00 0.00 41.03 2.59
772 783 6.370994 CACAATATGGAGGACATCTGCTTATC 59.629 42.308 0.00 0.00 41.03 1.75
773 784 6.043590 TCACAATATGGAGGACATCTGCTTAT 59.956 38.462 0.00 0.00 41.03 1.73
774 785 5.366477 TCACAATATGGAGGACATCTGCTTA 59.634 40.000 0.00 0.00 41.03 3.09
775 786 4.164796 TCACAATATGGAGGACATCTGCTT 59.835 41.667 0.00 0.00 41.03 3.91
776 787 3.713248 TCACAATATGGAGGACATCTGCT 59.287 43.478 0.00 0.00 41.03 4.24
777 788 4.063689 CTCACAATATGGAGGACATCTGC 58.936 47.826 0.00 0.00 41.03 4.26
786 797 6.057533 TGCAATAAGTCCTCACAATATGGAG 58.942 40.000 0.00 0.00 0.00 3.86
787 798 6.000246 TGCAATAAGTCCTCACAATATGGA 58.000 37.500 0.00 0.00 0.00 3.41
788 799 6.713903 AGATGCAATAAGTCCTCACAATATGG 59.286 38.462 0.00 0.00 0.00 2.74
789 800 7.359849 CGAGATGCAATAAGTCCTCACAATATG 60.360 40.741 0.00 0.00 0.00 1.78
790 801 6.648310 CGAGATGCAATAAGTCCTCACAATAT 59.352 38.462 0.00 0.00 0.00 1.28
791 802 5.985530 CGAGATGCAATAAGTCCTCACAATA 59.014 40.000 0.00 0.00 0.00 1.90
792 803 4.813161 CGAGATGCAATAAGTCCTCACAAT 59.187 41.667 0.00 0.00 0.00 2.71
793 804 4.081697 TCGAGATGCAATAAGTCCTCACAA 60.082 41.667 0.00 0.00 0.00 3.33
794 805 3.447229 TCGAGATGCAATAAGTCCTCACA 59.553 43.478 0.00 0.00 0.00 3.58
795 806 4.046938 TCGAGATGCAATAAGTCCTCAC 57.953 45.455 0.00 0.00 0.00 3.51
796 807 4.736126 TTCGAGATGCAATAAGTCCTCA 57.264 40.909 0.00 0.00 0.00 3.86
797 808 5.053145 ACATTCGAGATGCAATAAGTCCTC 58.947 41.667 0.00 0.00 0.00 3.71
798 809 5.028549 ACATTCGAGATGCAATAAGTCCT 57.971 39.130 0.00 0.00 0.00 3.85
799 810 6.480320 AGTTACATTCGAGATGCAATAAGTCC 59.520 38.462 0.00 0.00 0.00 3.85
800 811 7.470289 AGTTACATTCGAGATGCAATAAGTC 57.530 36.000 0.00 0.00 0.00 3.01
801 812 6.199154 CGAGTTACATTCGAGATGCAATAAGT 59.801 38.462 0.00 3.55 40.36 2.24
802 813 6.199154 ACGAGTTACATTCGAGATGCAATAAG 59.801 38.462 0.00 0.00 40.36 1.73
803 814 6.019881 CACGAGTTACATTCGAGATGCAATAA 60.020 38.462 0.00 0.00 40.36 1.40
804 815 5.458779 CACGAGTTACATTCGAGATGCAATA 59.541 40.000 0.00 0.00 40.36 1.90
805 816 4.268644 CACGAGTTACATTCGAGATGCAAT 59.731 41.667 0.00 0.00 40.36 3.56
806 817 3.612423 CACGAGTTACATTCGAGATGCAA 59.388 43.478 0.00 0.20 40.36 4.08
807 818 3.119637 TCACGAGTTACATTCGAGATGCA 60.120 43.478 1.14 0.00 40.36 3.96
808 819 3.240861 GTCACGAGTTACATTCGAGATGC 59.759 47.826 1.14 0.00 39.23 3.91
809 820 4.663166 AGTCACGAGTTACATTCGAGATG 58.337 43.478 1.14 6.18 39.23 2.90
810 821 4.966965 AGTCACGAGTTACATTCGAGAT 57.033 40.909 1.14 0.00 39.23 2.75
811 822 4.761235 AAGTCACGAGTTACATTCGAGA 57.239 40.909 1.14 0.00 40.36 4.04
812 823 4.090066 CCAAAGTCACGAGTTACATTCGAG 59.910 45.833 1.14 0.00 40.36 4.04
813 824 3.985279 CCAAAGTCACGAGTTACATTCGA 59.015 43.478 1.14 0.00 40.36 3.71
814 825 3.985279 TCCAAAGTCACGAGTTACATTCG 59.015 43.478 0.00 0.00 43.38 3.34
815 826 5.917541 TTCCAAAGTCACGAGTTACATTC 57.082 39.130 0.00 0.00 0.00 2.67
816 827 7.972832 TTATTCCAAAGTCACGAGTTACATT 57.027 32.000 0.00 0.00 0.00 2.71
817 828 7.972832 TTTATTCCAAAGTCACGAGTTACAT 57.027 32.000 0.00 0.00 0.00 2.29
818 829 7.789273 TTTTATTCCAAAGTCACGAGTTACA 57.211 32.000 0.00 0.00 0.00 2.41
819 830 9.673454 AAATTTTATTCCAAAGTCACGAGTTAC 57.327 29.630 0.00 0.00 0.00 2.50
820 831 9.887406 GAAATTTTATTCCAAAGTCACGAGTTA 57.113 29.630 0.00 0.00 0.00 2.24
821 832 7.865889 GGAAATTTTATTCCAAAGTCACGAGTT 59.134 33.333 1.30 0.00 46.70 3.01
822 833 7.368059 GGAAATTTTATTCCAAAGTCACGAGT 58.632 34.615 1.30 0.00 46.70 4.18
823 834 7.796958 GGAAATTTTATTCCAAAGTCACGAG 57.203 36.000 1.30 0.00 46.70 4.18
847 858 7.409980 GCAGTTTTGTTTTTCCCGAATAATACG 60.410 37.037 0.00 0.00 0.00 3.06
848 859 7.148705 GGCAGTTTTGTTTTTCCCGAATAATAC 60.149 37.037 0.00 0.00 0.00 1.89
849 860 6.869388 GGCAGTTTTGTTTTTCCCGAATAATA 59.131 34.615 0.00 0.00 0.00 0.98
850 861 5.699001 GGCAGTTTTGTTTTTCCCGAATAAT 59.301 36.000 0.00 0.00 0.00 1.28
851 862 5.051153 GGCAGTTTTGTTTTTCCCGAATAA 58.949 37.500 0.00 0.00 0.00 1.40
852 863 4.099573 TGGCAGTTTTGTTTTTCCCGAATA 59.900 37.500 0.00 0.00 0.00 1.75
853 864 3.118592 TGGCAGTTTTGTTTTTCCCGAAT 60.119 39.130 0.00 0.00 0.00 3.34
854 865 2.233922 TGGCAGTTTTGTTTTTCCCGAA 59.766 40.909 0.00 0.00 0.00 4.30
855 866 1.825474 TGGCAGTTTTGTTTTTCCCGA 59.175 42.857 0.00 0.00 0.00 5.14
856 867 2.301577 TGGCAGTTTTGTTTTTCCCG 57.698 45.000 0.00 0.00 0.00 5.14
857 868 3.802866 TGATGGCAGTTTTGTTTTTCCC 58.197 40.909 0.00 0.00 0.00 3.97
858 869 5.049474 GGATTGATGGCAGTTTTGTTTTTCC 60.049 40.000 0.00 0.00 0.00 3.13
859 870 5.759763 AGGATTGATGGCAGTTTTGTTTTTC 59.240 36.000 0.00 0.00 0.00 2.29
860 871 5.528320 CAGGATTGATGGCAGTTTTGTTTTT 59.472 36.000 0.00 0.00 0.00 1.94
861 872 5.058490 CAGGATTGATGGCAGTTTTGTTTT 58.942 37.500 0.00 0.00 0.00 2.43
862 873 4.344679 TCAGGATTGATGGCAGTTTTGTTT 59.655 37.500 0.00 0.00 0.00 2.83
863 874 3.896888 TCAGGATTGATGGCAGTTTTGTT 59.103 39.130 0.00 0.00 0.00 2.83
864 875 3.256631 GTCAGGATTGATGGCAGTTTTGT 59.743 43.478 0.00 0.00 35.39 2.83
865 876 3.671433 CGTCAGGATTGATGGCAGTTTTG 60.671 47.826 0.00 0.00 36.81 2.44
866 877 2.489329 CGTCAGGATTGATGGCAGTTTT 59.511 45.455 0.00 0.00 36.81 2.43
867 878 2.086869 CGTCAGGATTGATGGCAGTTT 58.913 47.619 0.00 0.00 36.81 2.66
868 879 1.742761 CGTCAGGATTGATGGCAGTT 58.257 50.000 0.00 0.00 36.81 3.16
869 880 0.745845 GCGTCAGGATTGATGGCAGT 60.746 55.000 0.00 0.00 40.10 4.40
870 881 1.769098 CGCGTCAGGATTGATGGCAG 61.769 60.000 0.00 0.00 40.10 4.85
871 882 1.815003 CGCGTCAGGATTGATGGCA 60.815 57.895 0.00 0.00 40.10 4.92
872 883 2.537560 CCGCGTCAGGATTGATGGC 61.538 63.158 4.92 0.00 40.10 4.40
873 884 2.537560 GCCGCGTCAGGATTGATGG 61.538 63.158 4.92 0.00 40.10 3.51
874 885 1.368345 TTGCCGCGTCAGGATTGATG 61.368 55.000 4.92 0.00 42.18 3.07
875 886 0.676466 TTTGCCGCGTCAGGATTGAT 60.676 50.000 4.92 0.00 35.39 2.57
876 887 0.886938 TTTTGCCGCGTCAGGATTGA 60.887 50.000 4.92 0.00 0.00 2.57
877 888 0.729140 GTTTTGCCGCGTCAGGATTG 60.729 55.000 4.92 0.00 0.00 2.67
878 889 1.169661 TGTTTTGCCGCGTCAGGATT 61.170 50.000 4.92 0.00 0.00 3.01
879 890 1.577328 CTGTTTTGCCGCGTCAGGAT 61.577 55.000 4.92 0.00 0.00 3.24
880 891 2.203084 TGTTTTGCCGCGTCAGGA 60.203 55.556 4.92 0.00 0.00 3.86
881 892 1.225376 TACTGTTTTGCCGCGTCAGG 61.225 55.000 4.92 0.00 0.00 3.86
897 908 6.761099 ACAGACACGTCATCTATTCTTACT 57.239 37.500 0.00 0.00 0.00 2.24
995 1006 4.067896 TGCTCTCTTGTTGTCCATTTCTC 58.932 43.478 0.00 0.00 0.00 2.87
997 1008 4.699257 AGATGCTCTCTTGTTGTCCATTTC 59.301 41.667 0.00 0.00 0.00 2.17
1000 1011 3.370315 GGAGATGCTCTCTTGTTGTCCAT 60.370 47.826 11.38 0.00 42.95 3.41
1001 1012 2.027745 GGAGATGCTCTCTTGTTGTCCA 60.028 50.000 11.38 0.00 42.95 4.02
1002 1013 2.235898 AGGAGATGCTCTCTTGTTGTCC 59.764 50.000 11.38 0.00 42.95 4.02
1003 1014 3.260740 CAGGAGATGCTCTCTTGTTGTC 58.739 50.000 13.52 0.00 43.21 3.18
1004 1015 3.331478 CAGGAGATGCTCTCTTGTTGT 57.669 47.619 13.52 0.00 43.21 3.32
1017 1029 1.333636 CGAGGAAGGTGGCAGGAGAT 61.334 60.000 0.00 0.00 0.00 2.75
1019 1031 1.333636 ATCGAGGAAGGTGGCAGGAG 61.334 60.000 0.00 0.00 0.00 3.69
1040 1054 0.468585 TGCTGGGAATGATGGGATGC 60.469 55.000 0.00 0.00 0.00 3.91
1069 1128 4.451150 GGCGGACATGTCGAGGCA 62.451 66.667 28.78 0.00 35.04 4.75
1350 1410 3.655615 AGTTGGTTTGTCAGTTACCCA 57.344 42.857 0.00 0.00 0.00 4.51
1362 1422 5.241728 GGAAGTCAAATGAGCTAGTTGGTTT 59.758 40.000 0.00 0.00 35.20 3.27
1366 1426 4.633565 GGAGGAAGTCAAATGAGCTAGTTG 59.366 45.833 0.00 0.00 35.76 3.16
1370 1430 3.454858 AGGGAGGAAGTCAAATGAGCTA 58.545 45.455 0.00 0.00 0.00 3.32
1457 1518 8.093659 CCAATTTACAAAAACTAATTGGTGGG 57.906 34.615 14.31 0.00 46.05 4.61
1526 1590 5.872617 TCATGTACCGAACTGAATTAACTGG 59.127 40.000 0.00 0.00 0.00 4.00
1568 1632 2.092968 TCACTCCTTCAGCACAACAGTT 60.093 45.455 0.00 0.00 0.00 3.16
1710 1774 5.255687 TCAGTTGTACCATGCATGATTTCT 58.744 37.500 28.31 14.13 0.00 2.52
1731 1795 1.271856 TCAATGAACCGGCTACCTCA 58.728 50.000 0.00 0.00 0.00 3.86
1754 1818 5.885912 AGAACCAGTGCTTAAGACAGAAAAA 59.114 36.000 6.67 0.00 0.00 1.94
1761 1825 3.127425 ACCAGAACCAGTGCTTAAGAC 57.873 47.619 6.67 1.88 0.00 3.01
1762 1826 3.857157 AACCAGAACCAGTGCTTAAGA 57.143 42.857 6.67 0.00 0.00 2.10
1763 1827 3.058914 CGAAACCAGAACCAGTGCTTAAG 60.059 47.826 0.00 0.00 0.00 1.85
1764 1828 2.875933 CGAAACCAGAACCAGTGCTTAA 59.124 45.455 0.00 0.00 0.00 1.85
1765 1829 2.489971 CGAAACCAGAACCAGTGCTTA 58.510 47.619 0.00 0.00 0.00 3.09
1766 1830 1.308998 CGAAACCAGAACCAGTGCTT 58.691 50.000 0.00 0.00 0.00 3.91
1767 1831 0.535102 CCGAAACCAGAACCAGTGCT 60.535 55.000 0.00 0.00 0.00 4.40
1768 1832 0.534203 TCCGAAACCAGAACCAGTGC 60.534 55.000 0.00 0.00 0.00 4.40
1769 1833 1.961793 TTCCGAAACCAGAACCAGTG 58.038 50.000 0.00 0.00 0.00 3.66
1771 1839 2.846193 TCTTTCCGAAACCAGAACCAG 58.154 47.619 0.00 0.00 0.00 4.00
1775 1843 4.037446 CCAACATTCTTTCCGAAACCAGAA 59.963 41.667 0.00 0.00 34.79 3.02
1780 1848 4.037565 AGAACCCAACATTCTTTCCGAAAC 59.962 41.667 0.00 0.00 32.32 2.78
1785 1853 5.313712 TCACTAGAACCCAACATTCTTTCC 58.686 41.667 0.00 0.00 37.57 3.13
1793 1861 4.841813 TGTCCTTATCACTAGAACCCAACA 59.158 41.667 0.00 0.00 0.00 3.33
1795 1863 6.636454 AATGTCCTTATCACTAGAACCCAA 57.364 37.500 0.00 0.00 0.00 4.12
1797 1865 6.183360 TGCTAATGTCCTTATCACTAGAACCC 60.183 42.308 0.00 0.00 0.00 4.11
1802 1870 9.743057 GCTATATGCTAATGTCCTTATCACTAG 57.257 37.037 0.00 0.00 38.95 2.57
1828 1900 5.985911 TGATCTGTCCATATCCATATGCAG 58.014 41.667 0.00 4.97 38.99 4.41
1839 1911 7.611079 TCAAATGTCAAACATGATCTGTCCATA 59.389 33.333 0.00 0.00 37.97 2.74
1840 1912 6.434965 TCAAATGTCAAACATGATCTGTCCAT 59.565 34.615 0.00 0.00 37.97 3.41
1841 1913 5.769162 TCAAATGTCAAACATGATCTGTCCA 59.231 36.000 0.00 0.00 37.97 4.02
1842 1914 6.088824 GTCAAATGTCAAACATGATCTGTCC 58.911 40.000 0.00 0.00 37.97 4.02
1843 1915 6.580041 GTGTCAAATGTCAAACATGATCTGTC 59.420 38.462 0.00 0.00 37.97 3.51
1844 1916 6.263842 AGTGTCAAATGTCAAACATGATCTGT 59.736 34.615 0.00 0.00 37.97 3.41
1849 1921 4.609947 GCAGTGTCAAATGTCAAACATGA 58.390 39.130 0.00 0.00 37.97 3.07
1963 2035 4.844884 CCTATCTCCCTTTTTCGACCTTT 58.155 43.478 0.00 0.00 0.00 3.11
1968 2040 4.569719 AAAGCCTATCTCCCTTTTTCGA 57.430 40.909 0.00 0.00 0.00 3.71
2028 2100 3.199946 TGGTCCACTTGATCAGAATACCC 59.800 47.826 11.50 4.48 28.41 3.69
2031 2103 4.080356 CCCTTGGTCCACTTGATCAGAATA 60.080 45.833 0.00 0.00 34.96 1.75
2058 2130 2.688446 TCTTACAGTCCCAGATACAGCG 59.312 50.000 0.00 0.00 0.00 5.18
2064 2136 5.422214 ACGAAAATCTTACAGTCCCAGAT 57.578 39.130 0.00 0.00 0.00 2.90
2085 2157 8.036273 TGAGAAAATTGTACTATTCGGGAAAC 57.964 34.615 2.97 0.00 0.00 2.78
2143 2216 4.799564 TTTTTGGTCTTGCAACTCTTGT 57.200 36.364 0.00 0.00 0.00 3.16
2246 2319 8.757789 CAACATATTGCTTTATTGTTAGCATGG 58.242 33.333 0.00 0.00 45.92 3.66
2327 2400 1.001641 ACTCATGTCAAGCCCCTGC 60.002 57.895 0.00 0.00 37.95 4.85
2401 2478 1.131883 CGGAAGGCAATGAAGCTCTTG 59.868 52.381 0.00 0.00 34.17 3.02
2430 2507 2.063266 TCACTACGTGCATTTTCCGAC 58.937 47.619 0.00 0.00 32.98 4.79
2444 2521 3.815401 ACCATGAAGTTTGCTGTCACTAC 59.185 43.478 0.00 0.00 0.00 2.73
2563 2673 8.729756 CAGTACCTTTTATGTGAAATGATGTCA 58.270 33.333 0.00 0.00 0.00 3.58
2564 2674 8.730680 ACAGTACCTTTTATGTGAAATGATGTC 58.269 33.333 0.00 0.00 0.00 3.06
2579 2689 9.403583 CAAACCATACCATATACAGTACCTTTT 57.596 33.333 0.00 0.00 0.00 2.27
2583 2693 8.208903 ACTTCAAACCATACCATATACAGTACC 58.791 37.037 0.00 0.00 0.00 3.34
2586 2696 9.832445 CTTACTTCAAACCATACCATATACAGT 57.168 33.333 0.00 0.00 0.00 3.55
2587 2697 9.832445 ACTTACTTCAAACCATACCATATACAG 57.168 33.333 0.00 0.00 0.00 2.74
2588 2698 9.607988 CACTTACTTCAAACCATACCATATACA 57.392 33.333 0.00 0.00 0.00 2.29
2596 2706 8.015658 GTGTGATTCACTTACTTCAAACCATAC 58.984 37.037 17.26 0.00 43.13 2.39
2737 2847 2.274542 TGGAGCTTTGGGATGGACTTA 58.725 47.619 0.00 0.00 0.00 2.24
2738 2848 1.075601 TGGAGCTTTGGGATGGACTT 58.924 50.000 0.00 0.00 0.00 3.01
2823 2933 8.289618 GCATTTTGTTCACTTCAGTTCAGTATA 58.710 33.333 0.00 0.00 0.00 1.47
2824 2934 7.013655 AGCATTTTGTTCACTTCAGTTCAGTAT 59.986 33.333 0.00 0.00 0.00 2.12
2837 2947 6.601741 TGAAATGGAAAGCATTTTGTTCAC 57.398 33.333 0.00 0.00 39.27 3.18
2839 2949 6.579666 GCATTGAAATGGAAAGCATTTTGTTC 59.420 34.615 5.25 0.00 36.12 3.18
2840 2950 6.263617 AGCATTGAAATGGAAAGCATTTTGTT 59.736 30.769 5.25 0.00 36.12 2.83
2841 2951 5.766174 AGCATTGAAATGGAAAGCATTTTGT 59.234 32.000 5.25 0.00 36.12 2.83
2842 2952 6.083630 CAGCATTGAAATGGAAAGCATTTTG 58.916 36.000 5.25 0.00 36.12 2.44
2843 2953 5.335348 GCAGCATTGAAATGGAAAGCATTTT 60.335 36.000 5.25 0.00 36.12 1.82
2844 2954 4.155280 GCAGCATTGAAATGGAAAGCATTT 59.845 37.500 5.25 0.00 37.73 2.32
2845 2955 3.687698 GCAGCATTGAAATGGAAAGCATT 59.312 39.130 5.25 0.00 36.90 3.56
2850 2960 3.499157 GCAAAGCAGCATTGAAATGGAAA 59.501 39.130 14.56 0.00 36.90 3.13
2852 2962 2.037381 TGCAAAGCAGCATTGAAATGGA 59.963 40.909 14.56 0.00 40.11 3.41
2858 2968 2.232399 TCTCTTGCAAAGCAGCATTGA 58.768 42.857 14.56 0.00 45.70 2.57
2862 2972 3.523606 TTTTTCTCTTGCAAAGCAGCA 57.476 38.095 0.00 0.00 45.70 4.41
2883 2993 0.963962 CATTTTGCTCCACTGCACCT 59.036 50.000 0.00 0.00 43.20 4.00
2886 2996 2.294233 GACTTCATTTTGCTCCACTGCA 59.706 45.455 0.00 0.00 41.65 4.41
2888 2998 4.843220 AAGACTTCATTTTGCTCCACTG 57.157 40.909 0.00 0.00 0.00 3.66
2971 3091 2.225467 GAGCAAAGAACTTCCTGCAGT 58.775 47.619 13.81 0.00 37.26 4.40
2977 3097 4.454504 TGTTATTCGGAGCAAAGAACTTCC 59.545 41.667 0.00 0.00 30.99 3.46
2985 3105 7.226720 GGAATCTATTCTGTTATTCGGAGCAAA 59.773 37.037 2.91 0.00 37.00 3.68
2992 3112 8.116753 GTGTGTTGGAATCTATTCTGTTATTCG 58.883 37.037 2.91 0.00 37.00 3.34
2999 3119 6.169094 ACTCAGTGTGTTGGAATCTATTCTG 58.831 40.000 2.91 0.00 37.00 3.02
3009 3129 6.514870 GCATTTTATCAACTCAGTGTGTTGGA 60.515 38.462 28.51 19.13 43.36 3.53
3048 3241 1.160137 CTGAAAAAGCTCCCCACTCG 58.840 55.000 0.00 0.00 0.00 4.18
3123 3316 3.577805 AGTTGCTTTACCTGTTCACCT 57.422 42.857 0.00 0.00 0.00 4.00
3162 3355 6.101332 GCCATCAAAACAAAGCATATGAAGA 58.899 36.000 6.97 0.00 0.00 2.87
3163 3356 5.870433 TGCCATCAAAACAAAGCATATGAAG 59.130 36.000 6.97 0.00 0.00 3.02
3175 3368 2.241160 ACAGAGCATGCCATCAAAACA 58.759 42.857 15.66 0.00 0.00 2.83
3176 3369 3.308438 AACAGAGCATGCCATCAAAAC 57.692 42.857 15.66 0.00 0.00 2.43
3190 3389 2.555325 TCTGCAGGCATTGAAAACAGAG 59.445 45.455 15.13 0.00 0.00 3.35
3195 3394 4.639755 TCGAATATCTGCAGGCATTGAAAA 59.360 37.500 15.13 0.00 0.00 2.29
3306 3505 4.133078 GCTCAGCTAGTTTATCAGCCAAT 58.867 43.478 0.00 0.00 38.61 3.16
3309 3508 2.158900 TGGCTCAGCTAGTTTATCAGCC 60.159 50.000 0.00 8.08 44.47 4.85
3315 3514 5.560724 AGAACAAATGGCTCAGCTAGTTTA 58.439 37.500 0.00 0.00 0.00 2.01
3349 3549 3.616956 TCTGGTAGCTGGAACATGAAG 57.383 47.619 0.00 0.00 38.20 3.02
3351 3552 3.118261 GGATTCTGGTAGCTGGAACATGA 60.118 47.826 0.00 0.00 38.20 3.07
3354 3555 2.265367 TGGATTCTGGTAGCTGGAACA 58.735 47.619 0.00 0.00 0.00 3.18
3358 3559 5.474876 GGATAATTTGGATTCTGGTAGCTGG 59.525 44.000 0.00 0.00 0.00 4.85
3359 3560 6.302269 AGGATAATTTGGATTCTGGTAGCTG 58.698 40.000 0.00 0.00 0.00 4.24
3364 3565 9.942526 AAGAAATAGGATAATTTGGATTCTGGT 57.057 29.630 0.00 0.00 0.00 4.00
3384 3586 7.449704 AGACTGGCTAGAAAATGTGAAAGAAAT 59.550 33.333 3.17 0.00 0.00 2.17
3387 3589 5.869579 AGACTGGCTAGAAAATGTGAAAGA 58.130 37.500 3.17 0.00 0.00 2.52
3396 3598 5.238583 GTTCAGCTTAGACTGGCTAGAAAA 58.761 41.667 3.17 0.00 38.26 2.29
3400 3602 2.480416 CGGTTCAGCTTAGACTGGCTAG 60.480 54.545 0.00 0.00 38.26 3.42
3401 3603 1.476891 CGGTTCAGCTTAGACTGGCTA 59.523 52.381 4.78 0.00 38.26 3.93
3402 3604 0.247736 CGGTTCAGCTTAGACTGGCT 59.752 55.000 0.00 0.00 38.26 4.75
3407 3609 1.871039 TGTTTGCGGTTCAGCTTAGAC 59.129 47.619 0.00 0.00 38.13 2.59
3477 3679 9.048446 CAAAATTGATTCAACTTGTCCAAGATT 57.952 29.630 13.69 2.31 40.79 2.40
3486 3688 3.424861 TCGCGCAAAATTGATTCAACTTG 59.575 39.130 8.75 14.48 0.00 3.16
3518 3720 6.482308 GGCTGAAAGAAGTGTAGAAACTTACA 59.518 38.462 0.00 0.00 40.48 2.41
3565 3864 5.622180 CATGTCAGGTACTCCTACTAGCTA 58.378 45.833 0.00 0.00 43.07 3.32
3569 3868 4.207955 CTGCATGTCAGGTACTCCTACTA 58.792 47.826 8.70 0.00 43.07 1.82
3570 3869 3.027412 CTGCATGTCAGGTACTCCTACT 58.973 50.000 8.70 0.00 43.07 2.57
3571 3870 3.444703 CTGCATGTCAGGTACTCCTAC 57.555 52.381 8.70 0.00 43.07 3.18
3573 3872 2.639839 AAACTGCATGTCAGGTACTCCT 59.360 45.455 17.61 0.00 43.24 3.69
3574 3873 3.059352 AAACTGCATGTCAGGTACTCC 57.941 47.619 17.61 0.00 43.24 3.85
3576 3875 4.319177 GAGAAAACTGCATGTCAGGTACT 58.681 43.478 17.61 14.26 43.24 2.73
3579 3878 2.508526 GGAGAAAACTGCATGTCAGGT 58.491 47.619 17.61 10.88 46.80 4.00
3582 3881 2.655090 TGGGAGAAAACTGCATGTCA 57.345 45.000 0.00 0.00 0.00 3.58
3584 3883 6.418057 TTTTTATGGGAGAAAACTGCATGT 57.582 33.333 0.00 0.00 0.00 3.21
3585 3884 6.314400 CCATTTTTATGGGAGAAAACTGCATG 59.686 38.462 0.00 0.00 38.04 4.06
3586 3885 6.013466 ACCATTTTTATGGGAGAAAACTGCAT 60.013 34.615 8.87 0.00 45.84 3.96
3587 3886 5.306678 ACCATTTTTATGGGAGAAAACTGCA 59.693 36.000 8.87 0.00 45.84 4.41
3588 3887 5.793817 ACCATTTTTATGGGAGAAAACTGC 58.206 37.500 8.87 0.00 45.84 4.40
3589 3888 6.147656 GCAACCATTTTTATGGGAGAAAACTG 59.852 38.462 8.87 0.00 45.84 3.16
3590 3889 6.183361 TGCAACCATTTTTATGGGAGAAAACT 60.183 34.615 8.87 0.00 45.84 2.66
3591 3890 5.994668 TGCAACCATTTTTATGGGAGAAAAC 59.005 36.000 8.87 0.00 45.84 2.43
3605 3904 0.469705 TGGCTGACCTGCAACCATTT 60.470 50.000 0.00 0.00 37.82 2.32
3606 3905 0.469705 TTGGCTGACCTGCAACCATT 60.470 50.000 0.00 0.00 42.09 3.16
3621 3920 1.399791 GTGCTGCTACAGAAGATTGGC 59.600 52.381 0.00 0.00 32.44 4.52
3649 3948 4.625742 ACACAATCGGAAACTTCTACGATG 59.374 41.667 0.00 0.00 44.32 3.84
3670 3969 2.636412 CCCGCCTCTCTTGACGACA 61.636 63.158 0.00 0.00 0.00 4.35
3671 3970 2.182030 CCCGCCTCTCTTGACGAC 59.818 66.667 0.00 0.00 0.00 4.34
3703 4002 0.533491 GAAGAATGCCAGCAATGCCA 59.467 50.000 0.00 0.00 0.00 4.92
3766 4065 0.525668 CGTCCATCGCTACCACTGTC 60.526 60.000 0.00 0.00 0.00 3.51
3820 4119 3.118261 CCGCCATAGCCTCAACCATATAT 60.118 47.826 0.00 0.00 34.57 0.86
3875 4174 0.317160 TCTTTGGTGTGCTCGACGAT 59.683 50.000 0.00 0.00 0.00 3.73
3994 4293 1.627834 AGAAGGCTAGCAGCAAACTCT 59.372 47.619 18.24 4.05 44.75 3.24
3995 4294 1.736681 CAGAAGGCTAGCAGCAAACTC 59.263 52.381 18.24 1.76 44.75 3.01
3996 4295 1.612726 CCAGAAGGCTAGCAGCAAACT 60.613 52.381 18.24 0.00 44.75 2.66
3997 4296 0.807496 CCAGAAGGCTAGCAGCAAAC 59.193 55.000 18.24 0.00 44.75 2.93
4000 4299 1.200760 TTCCCAGAAGGCTAGCAGCA 61.201 55.000 18.24 0.00 44.75 4.41
4001 4300 0.746204 GTTCCCAGAAGGCTAGCAGC 60.746 60.000 18.24 4.78 41.46 5.25
4002 4301 0.107459 GGTTCCCAGAAGGCTAGCAG 60.107 60.000 18.24 0.23 34.51 4.24
4003 4302 0.547712 AGGTTCCCAGAAGGCTAGCA 60.548 55.000 18.24 0.00 34.51 3.49
4004 4303 0.621082 AAGGTTCCCAGAAGGCTAGC 59.379 55.000 6.04 6.04 34.51 3.42
4012 4311 2.160171 CCCACCCAAGGTTCCCAGA 61.160 63.158 0.00 0.00 31.02 3.86
4015 4314 2.940124 AACCCACCCAAGGTTCCC 59.060 61.111 0.00 0.00 44.42 3.97
4035 4364 3.535561 CTGAGCACGGGAATACATTTCT 58.464 45.455 0.00 0.00 0.00 2.52
4066 4395 2.230025 ACCTCTGAGTTCTGTCGATGTG 59.770 50.000 3.66 0.00 0.00 3.21
4067 4396 2.520069 ACCTCTGAGTTCTGTCGATGT 58.480 47.619 3.66 0.00 0.00 3.06
4068 4397 4.909696 ATACCTCTGAGTTCTGTCGATG 57.090 45.455 3.66 0.00 0.00 3.84
4069 4398 8.569641 GTTTATATACCTCTGAGTTCTGTCGAT 58.430 37.037 3.66 0.00 0.00 3.59
4089 4419 7.782049 AGTCACCGAAGAAGATCATGTTTATA 58.218 34.615 0.00 0.00 0.00 0.98
4108 4438 3.744660 AGGAGTGATGTTGAAAGTCACC 58.255 45.455 7.36 0.00 42.38 4.02
4153 4483 8.883731 CCAGATTTTACAGTCCAATACTAACAG 58.116 37.037 0.00 0.00 35.76 3.16
4172 4502 8.877864 TTACATTCCTGATACAAACCAGATTT 57.122 30.769 0.00 0.00 32.37 2.17
4223 4554 8.830580 CAACGACACTCTCCATTTAAATATGAT 58.169 33.333 0.00 0.00 0.00 2.45
4237 4568 3.058155 TGAGCTAGTTCAACGACACTCTC 60.058 47.826 6.84 0.00 0.00 3.20
4282 4613 7.253950 CCAAGTGTAATTCGTTGGAAAAAGTTG 60.254 37.037 0.00 0.00 41.82 3.16
4296 4628 6.208599 TCAAAAGGGATCACCAAGTGTAATTC 59.791 38.462 0.00 0.00 43.89 2.17
4381 4796 4.338964 TGTGCATGACAAAAGATCTTGTGT 59.661 37.500 27.83 27.83 43.27 3.72
4456 4876 6.551385 AAGAGAAGCTCACTACAAACATTG 57.449 37.500 0.00 0.00 32.06 2.82
4482 4909 8.050325 TGTATGGTTGTACCTTTATGCAATAGT 58.950 33.333 0.00 0.00 39.58 2.12
4510 4938 6.854381 CACATGTCAATGATGTCATTATTCCG 59.146 38.462 7.84 1.37 44.10 4.30
4512 4940 7.378728 CAGCACATGTCAATGATGTCATTATTC 59.621 37.037 7.84 3.44 44.10 1.75
4560 4993 4.336993 ACACAAACAACATATTCACGTGGT 59.663 37.500 17.00 7.66 0.00 4.16
4570 5003 5.636121 GTCGGAGTGATACACAAACAACATA 59.364 40.000 4.75 0.00 36.74 2.29
4571 5004 4.451096 GTCGGAGTGATACACAAACAACAT 59.549 41.667 4.75 0.00 36.74 2.71
4572 5005 3.805422 GTCGGAGTGATACACAAACAACA 59.195 43.478 4.75 0.00 36.74 3.33
4573 5006 3.121126 CGTCGGAGTGATACACAAACAAC 60.121 47.826 4.75 0.00 36.74 3.32
4576 5009 1.990563 CCGTCGGAGTGATACACAAAC 59.009 52.381 4.91 0.00 36.74 2.93
4861 5296 3.779444 TGGAGAGTTTAAGCCAGAGAGA 58.221 45.455 0.00 0.00 0.00 3.10
4899 5334 3.685139 TTGCGATATCTCAAGATCCCC 57.315 47.619 4.00 0.00 36.05 4.81


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.