Multiple sequence alignment - TraesCS2D01G006100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2D01G006100 chr2D 100.000 2872 0 0 1 2872 2962022 2959151 0.000000e+00 5304.0
1 TraesCS2D01G006100 chr2D 94.271 384 18 3 1 383 588331645 588332025 4.120000e-163 584.0
2 TraesCS2D01G006100 chr2A 91.371 1750 119 13 367 2104 2713096 2714825 0.000000e+00 2366.0
3 TraesCS2D01G006100 chr2A 94.855 447 18 5 2428 2872 2715248 2715691 0.000000e+00 693.0
4 TraesCS2D01G006100 chr2A 94.505 182 4 1 2091 2272 2715083 2715258 2.820000e-70 276.0
5 TraesCS2D01G006100 chr2A 90.435 115 11 0 2273 2387 16135789 16135675 4.960000e-33 152.0
6 TraesCS2D01G006100 chr2B 90.680 1749 144 8 367 2104 7688521 7690261 0.000000e+00 2309.0
7 TraesCS2D01G006100 chr2B 95.291 446 18 3 2428 2872 7690683 7691126 0.000000e+00 704.0
8 TraesCS2D01G006100 chr2B 93.333 180 5 1 2093 2272 7690521 7690693 2.840000e-65 259.0
9 TraesCS2D01G006100 chr2B 93.082 159 11 0 2273 2431 777671860 777672018 1.720000e-57 233.0
10 TraesCS2D01G006100 chr2B 76.687 163 21 9 2580 2726 488696286 488696447 1.100000e-09 75.0
11 TraesCS2D01G006100 chr6D 95.722 374 13 2 1 373 274415949 274416320 1.470000e-167 599.0
12 TraesCS2D01G006100 chr6D 94.595 37 1 1 2572 2608 379264061 379264096 4.000000e-04 56.5
13 TraesCS2D01G006100 chr7D 95.913 367 12 2 1 366 139459623 139459987 2.460000e-165 592.0
14 TraesCS2D01G006100 chr7D 95.640 367 15 1 1 366 213256772 213256406 3.190000e-164 588.0
15 TraesCS2D01G006100 chr7D 84.118 170 14 1 2274 2430 111316434 111316265 4.960000e-33 152.0
16 TraesCS2D01G006100 chr5D 95.913 367 12 2 2 367 358662893 358663257 2.460000e-165 592.0
17 TraesCS2D01G006100 chr5D 95.640 367 13 2 1 366 444619057 444618693 1.150000e-163 586.0
18 TraesCS2D01G006100 chr4D 95.913 367 12 2 1 366 25308888 25309252 2.460000e-165 592.0
19 TraesCS2D01G006100 chr4D 95.902 366 12 2 2 366 494737167 494737530 8.860000e-165 590.0
20 TraesCS2D01G006100 chr3D 95.640 367 13 2 1 366 76258537 76258173 1.150000e-163 586.0
21 TraesCS2D01G006100 chr3A 94.937 158 7 1 2274 2430 155888298 155888455 2.210000e-61 246.0
22 TraesCS2D01G006100 chr6B 93.082 159 10 1 2272 2430 296413521 296413678 6.190000e-57 231.0
23 TraesCS2D01G006100 chrUn 89.937 159 15 1 2273 2431 127034639 127034482 1.350000e-48 204.0
24 TraesCS2D01G006100 chr7B 100.000 30 0 0 2579 2608 418853932 418853903 4.000000e-04 56.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2D01G006100 chr2D 2959151 2962022 2871 True 5304.000000 5304 100.000000 1 2872 1 chr2D.!!$R1 2871
1 TraesCS2D01G006100 chr2A 2713096 2715691 2595 False 1111.666667 2366 93.577000 367 2872 3 chr2A.!!$F1 2505
2 TraesCS2D01G006100 chr2B 7688521 7691126 2605 False 1090.666667 2309 93.101333 367 2872 3 chr2B.!!$F3 2505

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
280 281 0.034863 GGCCCGAACCTGGATAAACA 60.035 55.0 0.0 0.0 0.0 2.83 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2088 2108 0.606604 GCTGACCGAAACCCTACTCA 59.393 55.0 0.0 0.0 0.0 3.41 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
26 27 1.796796 CGTGAAAGGCAAGCTAGGC 59.203 57.895 1.78 1.78 0.00 3.93
27 28 1.796796 GTGAAAGGCAAGCTAGGCG 59.203 57.895 4.42 0.00 39.37 5.52
28 29 0.673644 GTGAAAGGCAAGCTAGGCGA 60.674 55.000 4.42 0.00 39.37 5.54
29 30 0.673644 TGAAAGGCAAGCTAGGCGAC 60.674 55.000 4.42 0.00 39.37 5.19
30 31 1.369839 GAAAGGCAAGCTAGGCGACC 61.370 60.000 4.42 0.00 39.37 4.79
31 32 2.124507 AAAGGCAAGCTAGGCGACCA 62.125 55.000 4.42 0.00 39.37 4.02
32 33 2.512515 GGCAAGCTAGGCGACCAG 60.513 66.667 4.42 0.00 0.00 4.00
36 37 2.681778 AGCTAGGCGACCAGCTGT 60.682 61.111 11.50 0.11 46.21 4.40
37 38 3.011635 AGCTAGGCGACCAGCTGTG 62.012 63.158 11.50 6.81 46.21 3.66
42 43 4.606071 GCGACCAGCTGTGAAGAT 57.394 55.556 13.81 0.00 44.04 2.40
43 44 2.846371 GCGACCAGCTGTGAAGATT 58.154 52.632 13.81 0.00 44.04 2.40
44 45 0.723981 GCGACCAGCTGTGAAGATTC 59.276 55.000 13.81 0.00 44.04 2.52
45 46 1.363744 CGACCAGCTGTGAAGATTCC 58.636 55.000 13.81 0.00 0.00 3.01
46 47 1.066573 CGACCAGCTGTGAAGATTCCT 60.067 52.381 13.81 0.00 0.00 3.36
47 48 2.613977 CGACCAGCTGTGAAGATTCCTT 60.614 50.000 13.81 0.00 34.81 3.36
48 49 3.006247 GACCAGCTGTGAAGATTCCTTC 58.994 50.000 13.81 0.00 46.89 3.46
49 50 2.641815 ACCAGCTGTGAAGATTCCTTCT 59.358 45.455 13.81 0.00 46.84 2.85
51 52 4.287067 ACCAGCTGTGAAGATTCCTTCTTA 59.713 41.667 13.81 0.00 44.88 2.10
52 53 5.045286 ACCAGCTGTGAAGATTCCTTCTTAT 60.045 40.000 13.81 0.00 44.88 1.73
53 54 5.884792 CCAGCTGTGAAGATTCCTTCTTATT 59.115 40.000 13.81 0.00 44.88 1.40
54 55 6.376581 CCAGCTGTGAAGATTCCTTCTTATTT 59.623 38.462 13.81 0.00 44.88 1.40
55 56 7.554118 CCAGCTGTGAAGATTCCTTCTTATTTA 59.446 37.037 13.81 0.00 44.88 1.40
56 57 8.950210 CAGCTGTGAAGATTCCTTCTTATTTAA 58.050 33.333 5.25 0.00 44.88 1.52
57 58 8.951243 AGCTGTGAAGATTCCTTCTTATTTAAC 58.049 33.333 6.71 0.00 44.88 2.01
58 59 8.184848 GCTGTGAAGATTCCTTCTTATTTAACC 58.815 37.037 6.71 0.00 44.88 2.85
59 60 8.263940 TGTGAAGATTCCTTCTTATTTAACCG 57.736 34.615 6.71 0.00 44.88 4.44
60 61 8.098286 TGTGAAGATTCCTTCTTATTTAACCGA 58.902 33.333 6.71 0.00 44.88 4.69
61 62 8.388853 GTGAAGATTCCTTCTTATTTAACCGAC 58.611 37.037 6.71 0.00 44.88 4.79
62 63 8.319146 TGAAGATTCCTTCTTATTTAACCGACT 58.681 33.333 6.71 0.00 44.88 4.18
63 64 8.719560 AAGATTCCTTCTTATTTAACCGACTC 57.280 34.615 0.00 0.00 43.03 3.36
64 65 7.273712 AGATTCCTTCTTATTTAACCGACTCC 58.726 38.462 0.00 0.00 0.00 3.85
65 66 6.363167 TTCCTTCTTATTTAACCGACTCCA 57.637 37.500 0.00 0.00 0.00 3.86
66 67 6.555463 TCCTTCTTATTTAACCGACTCCAT 57.445 37.500 0.00 0.00 0.00 3.41
67 68 6.346096 TCCTTCTTATTTAACCGACTCCATG 58.654 40.000 0.00 0.00 0.00 3.66
68 69 6.070424 TCCTTCTTATTTAACCGACTCCATGT 60.070 38.462 0.00 0.00 0.00 3.21
69 70 7.124599 TCCTTCTTATTTAACCGACTCCATGTA 59.875 37.037 0.00 0.00 0.00 2.29
70 71 7.438459 CCTTCTTATTTAACCGACTCCATGTAG 59.562 40.741 0.00 0.00 0.00 2.74
71 72 6.278363 TCTTATTTAACCGACTCCATGTAGC 58.722 40.000 0.00 0.00 0.00 3.58
72 73 2.973694 TTAACCGACTCCATGTAGCC 57.026 50.000 0.00 0.00 0.00 3.93
73 74 1.117150 TAACCGACTCCATGTAGCCC 58.883 55.000 0.00 0.00 0.00 5.19
74 75 0.617820 AACCGACTCCATGTAGCCCT 60.618 55.000 0.00 0.00 0.00 5.19
75 76 0.260816 ACCGACTCCATGTAGCCCTA 59.739 55.000 0.00 0.00 0.00 3.53
76 77 0.962489 CCGACTCCATGTAGCCCTAG 59.038 60.000 0.00 0.00 0.00 3.02
77 78 1.478837 CCGACTCCATGTAGCCCTAGA 60.479 57.143 0.00 0.00 0.00 2.43
78 79 2.520069 CGACTCCATGTAGCCCTAGAT 58.480 52.381 0.00 0.00 0.00 1.98
79 80 2.490115 CGACTCCATGTAGCCCTAGATC 59.510 54.545 0.00 0.00 0.00 2.75
80 81 3.773560 GACTCCATGTAGCCCTAGATCT 58.226 50.000 0.00 0.00 0.00 2.75
81 82 3.761752 GACTCCATGTAGCCCTAGATCTC 59.238 52.174 0.00 0.00 0.00 2.75
82 83 3.401002 ACTCCATGTAGCCCTAGATCTCT 59.599 47.826 0.00 0.00 0.00 3.10
83 84 4.016444 CTCCATGTAGCCCTAGATCTCTC 58.984 52.174 0.00 0.00 0.00 3.20
84 85 3.096092 CCATGTAGCCCTAGATCTCTCC 58.904 54.545 0.00 0.00 0.00 3.71
85 86 2.570415 TGTAGCCCTAGATCTCTCCG 57.430 55.000 0.00 0.00 0.00 4.63
86 87 1.074084 TGTAGCCCTAGATCTCTCCGG 59.926 57.143 0.00 0.00 0.00 5.14
87 88 1.074244 GTAGCCCTAGATCTCTCCGGT 59.926 57.143 0.00 0.00 0.00 5.28
88 89 0.178975 AGCCCTAGATCTCTCCGGTG 60.179 60.000 0.00 0.00 0.00 4.94
89 90 0.468400 GCCCTAGATCTCTCCGGTGT 60.468 60.000 0.00 0.00 0.00 4.16
90 91 1.611519 CCCTAGATCTCTCCGGTGTC 58.388 60.000 0.00 0.00 0.00 3.67
91 92 1.144093 CCCTAGATCTCTCCGGTGTCT 59.856 57.143 0.00 0.47 0.00 3.41
92 93 2.372504 CCCTAGATCTCTCCGGTGTCTA 59.627 54.545 0.00 1.76 0.00 2.59
93 94 3.009695 CCCTAGATCTCTCCGGTGTCTAT 59.990 52.174 0.00 0.00 0.00 1.98
94 95 4.225492 CCCTAGATCTCTCCGGTGTCTATA 59.775 50.000 0.00 0.00 0.00 1.31
95 96 5.104277 CCCTAGATCTCTCCGGTGTCTATAT 60.104 48.000 0.00 0.00 0.00 0.86
96 97 6.099990 CCCTAGATCTCTCCGGTGTCTATATA 59.900 46.154 0.00 0.00 0.00 0.86
97 98 7.365742 CCCTAGATCTCTCCGGTGTCTATATAA 60.366 44.444 0.00 0.00 0.00 0.98
98 99 8.047911 CCTAGATCTCTCCGGTGTCTATATAAA 58.952 40.741 0.00 0.00 0.00 1.40
99 100 7.690952 AGATCTCTCCGGTGTCTATATAAAC 57.309 40.000 0.00 0.00 0.00 2.01
100 101 6.660094 AGATCTCTCCGGTGTCTATATAAACC 59.340 42.308 0.00 0.68 0.00 3.27
107 108 4.807443 GGTGTCTATATAAACCGGAGAGC 58.193 47.826 9.46 0.00 0.00 4.09
108 109 4.280174 GGTGTCTATATAAACCGGAGAGCA 59.720 45.833 9.46 0.00 0.00 4.26
109 110 5.047235 GGTGTCTATATAAACCGGAGAGCAT 60.047 44.000 9.46 0.00 0.00 3.79
110 111 6.152323 GGTGTCTATATAAACCGGAGAGCATA 59.848 42.308 9.46 0.00 0.00 3.14
111 112 7.251994 GTGTCTATATAAACCGGAGAGCATAG 58.748 42.308 9.46 9.44 0.00 2.23
112 113 6.946583 TGTCTATATAAACCGGAGAGCATAGT 59.053 38.462 9.46 0.00 0.00 2.12
113 114 7.120873 TGTCTATATAAACCGGAGAGCATAGTC 59.879 40.741 9.46 7.77 0.00 2.59
114 115 5.662674 ATATAAACCGGAGAGCATAGTCC 57.337 43.478 9.46 0.00 0.00 3.85
115 116 1.568504 AAACCGGAGAGCATAGTCCA 58.431 50.000 9.46 0.00 32.55 4.02
116 117 1.115467 AACCGGAGAGCATAGTCCAG 58.885 55.000 9.46 0.00 32.55 3.86
117 118 0.259065 ACCGGAGAGCATAGTCCAGA 59.741 55.000 9.46 0.00 32.55 3.86
118 119 1.133325 ACCGGAGAGCATAGTCCAGAT 60.133 52.381 9.46 0.00 32.55 2.90
119 120 2.108425 ACCGGAGAGCATAGTCCAGATA 59.892 50.000 9.46 0.00 32.55 1.98
120 121 2.752354 CCGGAGAGCATAGTCCAGATAG 59.248 54.545 0.00 0.00 32.55 2.08
121 122 2.752354 CGGAGAGCATAGTCCAGATAGG 59.248 54.545 0.00 0.00 39.47 2.57
122 123 3.096092 GGAGAGCATAGTCCAGATAGGG 58.904 54.545 0.00 0.00 38.24 3.53
123 124 3.096092 GAGAGCATAGTCCAGATAGGGG 58.904 54.545 0.00 0.00 38.24 4.79
124 125 2.724672 AGAGCATAGTCCAGATAGGGGA 59.275 50.000 0.00 0.00 38.24 4.81
134 135 5.825593 TCCAGATAGGGGACATTCATTAC 57.174 43.478 0.00 0.00 38.24 1.89
135 136 4.597507 TCCAGATAGGGGACATTCATTACC 59.402 45.833 0.00 0.00 38.24 2.85
136 137 4.350816 CCAGATAGGGGACATTCATTACCA 59.649 45.833 0.00 0.00 0.00 3.25
137 138 5.014544 CCAGATAGGGGACATTCATTACCAT 59.985 44.000 0.00 0.00 0.00 3.55
138 139 6.215431 CCAGATAGGGGACATTCATTACCATA 59.785 42.308 0.00 0.00 0.00 2.74
139 140 7.092264 CCAGATAGGGGACATTCATTACCATAT 60.092 40.741 0.00 0.00 31.58 1.78
140 141 8.992349 CAGATAGGGGACATTCATTACCATATA 58.008 37.037 0.00 0.00 29.33 0.86
141 142 9.749996 AGATAGGGGACATTCATTACCATATAT 57.250 33.333 0.00 0.00 29.33 0.86
144 145 8.230848 AGGGGACATTCATTACCATATATTCA 57.769 34.615 0.00 0.00 0.00 2.57
145 146 8.109634 AGGGGACATTCATTACCATATATTCAC 58.890 37.037 0.00 0.00 0.00 3.18
146 147 7.888021 GGGGACATTCATTACCATATATTCACA 59.112 37.037 0.00 0.00 0.00 3.58
147 148 9.466497 GGGACATTCATTACCATATATTCACAT 57.534 33.333 0.00 0.00 0.00 3.21
157 158 9.769677 TTACCATATATTCACATAGGCTAGACT 57.230 33.333 2.16 2.16 0.00 3.24
158 159 8.671987 ACCATATATTCACATAGGCTAGACTT 57.328 34.615 1.68 0.00 0.00 3.01
159 160 8.754080 ACCATATATTCACATAGGCTAGACTTC 58.246 37.037 1.68 0.00 0.00 3.01
160 161 8.976353 CCATATATTCACATAGGCTAGACTTCT 58.024 37.037 1.68 0.00 0.00 2.85
163 164 5.344743 TTCACATAGGCTAGACTTCTTGG 57.655 43.478 1.68 0.00 0.00 3.61
164 165 3.706594 TCACATAGGCTAGACTTCTTGGG 59.293 47.826 1.68 0.53 0.00 4.12
165 166 3.452627 CACATAGGCTAGACTTCTTGGGT 59.547 47.826 1.68 0.00 0.00 4.51
166 167 4.080863 CACATAGGCTAGACTTCTTGGGTT 60.081 45.833 1.68 0.00 0.00 4.11
167 168 4.536489 ACATAGGCTAGACTTCTTGGGTTT 59.464 41.667 1.68 0.00 0.00 3.27
168 169 5.724854 ACATAGGCTAGACTTCTTGGGTTTA 59.275 40.000 1.68 0.00 0.00 2.01
169 170 4.828072 AGGCTAGACTTCTTGGGTTTAG 57.172 45.455 0.00 0.00 0.00 1.85
170 171 3.055021 AGGCTAGACTTCTTGGGTTTAGC 60.055 47.826 0.00 7.55 42.71 3.09
171 172 3.271729 GCTAGACTTCTTGGGTTTAGCC 58.728 50.000 0.00 0.00 39.74 3.93
172 173 3.307480 GCTAGACTTCTTGGGTTTAGCCA 60.307 47.826 0.00 0.00 39.74 4.75
173 174 4.626529 GCTAGACTTCTTGGGTTTAGCCAT 60.627 45.833 0.89 0.00 39.74 4.40
174 175 4.388577 AGACTTCTTGGGTTTAGCCATT 57.611 40.909 0.89 0.00 39.65 3.16
175 176 5.514500 AGACTTCTTGGGTTTAGCCATTA 57.486 39.130 0.89 0.00 39.65 1.90
176 177 6.079712 AGACTTCTTGGGTTTAGCCATTAT 57.920 37.500 0.89 0.00 39.65 1.28
177 178 5.888161 AGACTTCTTGGGTTTAGCCATTATG 59.112 40.000 0.89 0.00 39.65 1.90
178 179 5.826643 ACTTCTTGGGTTTAGCCATTATGA 58.173 37.500 0.89 0.00 39.65 2.15
179 180 6.435164 ACTTCTTGGGTTTAGCCATTATGAT 58.565 36.000 0.89 0.00 39.65 2.45
180 181 6.547510 ACTTCTTGGGTTTAGCCATTATGATC 59.452 38.462 0.89 0.00 39.65 2.92
181 182 6.266131 TCTTGGGTTTAGCCATTATGATCT 57.734 37.500 0.89 0.00 39.65 2.75
182 183 6.299141 TCTTGGGTTTAGCCATTATGATCTC 58.701 40.000 0.89 0.00 39.65 2.75
183 184 4.641396 TGGGTTTAGCCATTATGATCTCG 58.359 43.478 0.00 0.00 39.65 4.04
184 185 4.102524 TGGGTTTAGCCATTATGATCTCGT 59.897 41.667 0.00 0.00 39.65 4.18
185 186 4.452455 GGGTTTAGCCATTATGATCTCGTG 59.548 45.833 0.00 0.00 39.65 4.35
186 187 4.083802 GGTTTAGCCATTATGATCTCGTGC 60.084 45.833 0.00 0.00 37.17 5.34
187 188 4.607293 TTAGCCATTATGATCTCGTGCT 57.393 40.909 0.00 0.00 0.00 4.40
188 189 5.722021 TTAGCCATTATGATCTCGTGCTA 57.278 39.130 0.00 0.00 0.00 3.49
189 190 4.185467 AGCCATTATGATCTCGTGCTAG 57.815 45.455 0.00 0.00 0.00 3.42
190 191 3.829026 AGCCATTATGATCTCGTGCTAGA 59.171 43.478 0.00 0.00 0.00 2.43
191 192 4.465660 AGCCATTATGATCTCGTGCTAGAT 59.534 41.667 0.00 0.00 38.95 1.98
200 201 4.362932 TCTCGTGCTAGATCAACTCTTG 57.637 45.455 0.00 0.00 35.28 3.02
201 202 3.759086 TCTCGTGCTAGATCAACTCTTGT 59.241 43.478 0.00 0.00 35.28 3.16
202 203 4.941873 TCTCGTGCTAGATCAACTCTTGTA 59.058 41.667 0.00 0.00 35.28 2.41
203 204 5.414765 TCTCGTGCTAGATCAACTCTTGTAA 59.585 40.000 0.00 0.00 35.28 2.41
204 205 6.095580 TCTCGTGCTAGATCAACTCTTGTAAT 59.904 38.462 0.00 0.00 35.28 1.89
205 206 7.282450 TCTCGTGCTAGATCAACTCTTGTAATA 59.718 37.037 0.00 0.00 35.28 0.98
206 207 7.194278 TCGTGCTAGATCAACTCTTGTAATAC 58.806 38.462 0.00 0.00 35.28 1.89
207 208 7.067129 TCGTGCTAGATCAACTCTTGTAATACT 59.933 37.037 0.00 0.00 35.28 2.12
208 209 7.377397 CGTGCTAGATCAACTCTTGTAATACTC 59.623 40.741 0.00 0.00 35.28 2.59
209 210 8.191446 GTGCTAGATCAACTCTTGTAATACTCA 58.809 37.037 0.00 0.00 35.28 3.41
210 211 8.918116 TGCTAGATCAACTCTTGTAATACTCAT 58.082 33.333 0.00 0.00 35.28 2.90
231 232 8.784994 ACTCATATTCATCAAGATCAATCAAGC 58.215 33.333 0.00 0.00 0.00 4.01
232 233 8.685838 TCATATTCATCAAGATCAATCAAGCA 57.314 30.769 0.00 0.00 0.00 3.91
233 234 8.784043 TCATATTCATCAAGATCAATCAAGCAG 58.216 33.333 0.00 0.00 0.00 4.24
234 235 5.830000 TTCATCAAGATCAATCAAGCAGG 57.170 39.130 0.00 0.00 0.00 4.85
235 236 5.106876 TCATCAAGATCAATCAAGCAGGA 57.893 39.130 0.00 0.00 0.00 3.86
236 237 5.503002 TCATCAAGATCAATCAAGCAGGAA 58.497 37.500 0.00 0.00 0.00 3.36
237 238 5.589050 TCATCAAGATCAATCAAGCAGGAAG 59.411 40.000 0.00 0.00 0.00 3.46
238 239 4.914983 TCAAGATCAATCAAGCAGGAAGT 58.085 39.130 0.00 0.00 0.00 3.01
239 240 6.053632 TCAAGATCAATCAAGCAGGAAGTA 57.946 37.500 0.00 0.00 0.00 2.24
240 241 6.111382 TCAAGATCAATCAAGCAGGAAGTAG 58.889 40.000 0.00 0.00 0.00 2.57
241 242 5.033589 AGATCAATCAAGCAGGAAGTAGG 57.966 43.478 0.00 0.00 0.00 3.18
242 243 3.634397 TCAATCAAGCAGGAAGTAGGG 57.366 47.619 0.00 0.00 0.00 3.53
243 244 2.912956 TCAATCAAGCAGGAAGTAGGGT 59.087 45.455 0.00 0.00 0.00 4.34
244 245 4.101114 TCAATCAAGCAGGAAGTAGGGTA 58.899 43.478 0.00 0.00 0.00 3.69
245 246 4.721776 TCAATCAAGCAGGAAGTAGGGTAT 59.278 41.667 0.00 0.00 0.00 2.73
246 247 5.191722 TCAATCAAGCAGGAAGTAGGGTATT 59.808 40.000 0.00 0.00 0.00 1.89
247 248 6.385759 TCAATCAAGCAGGAAGTAGGGTATTA 59.614 38.462 0.00 0.00 0.00 0.98
248 249 5.609533 TCAAGCAGGAAGTAGGGTATTAC 57.390 43.478 0.00 0.00 0.00 1.89
249 250 4.407945 TCAAGCAGGAAGTAGGGTATTACC 59.592 45.833 4.11 4.11 37.60 2.85
250 251 4.282292 AGCAGGAAGTAGGGTATTACCT 57.718 45.455 12.54 2.07 44.75 3.08
251 252 4.632292 AGCAGGAAGTAGGGTATTACCTT 58.368 43.478 12.54 7.74 42.09 3.50
252 253 4.654724 AGCAGGAAGTAGGGTATTACCTTC 59.345 45.833 12.54 8.13 42.09 3.46
253 254 4.407945 GCAGGAAGTAGGGTATTACCTTCA 59.592 45.833 12.54 0.00 42.09 3.02
254 255 5.071923 GCAGGAAGTAGGGTATTACCTTCAT 59.928 44.000 12.54 3.77 42.09 2.57
255 256 6.269307 GCAGGAAGTAGGGTATTACCTTCATA 59.731 42.308 12.54 0.00 42.09 2.15
256 257 7.525692 GCAGGAAGTAGGGTATTACCTTCATAG 60.526 44.444 12.54 4.17 42.09 2.23
257 258 7.728981 CAGGAAGTAGGGTATTACCTTCATAGA 59.271 40.741 12.54 0.00 42.09 1.98
258 259 7.951245 AGGAAGTAGGGTATTACCTTCATAGAG 59.049 40.741 12.54 0.00 42.09 2.43
259 260 7.949006 GGAAGTAGGGTATTACCTTCATAGAGA 59.051 40.741 12.54 0.00 42.09 3.10
260 261 8.943594 AAGTAGGGTATTACCTTCATAGAGAG 57.056 38.462 12.54 0.00 42.09 3.20
261 262 7.471890 AGTAGGGTATTACCTTCATAGAGAGG 58.528 42.308 12.54 0.00 42.09 3.69
266 267 2.053618 CCTTCATAGAGAGGGCCCG 58.946 63.158 18.44 0.00 36.61 6.13
267 268 0.470080 CCTTCATAGAGAGGGCCCGA 60.470 60.000 18.44 1.91 36.61 5.14
268 269 1.414158 CTTCATAGAGAGGGCCCGAA 58.586 55.000 18.44 11.03 0.00 4.30
269 270 1.069358 CTTCATAGAGAGGGCCCGAAC 59.931 57.143 18.44 12.45 0.00 3.95
270 271 0.759436 TCATAGAGAGGGCCCGAACC 60.759 60.000 18.44 7.31 0.00 3.62
271 272 0.760945 CATAGAGAGGGCCCGAACCT 60.761 60.000 18.44 14.71 42.18 3.50
272 273 0.760945 ATAGAGAGGGCCCGAACCTG 60.761 60.000 18.44 0.00 38.79 4.00
273 274 2.873557 TAGAGAGGGCCCGAACCTGG 62.874 65.000 18.44 0.00 38.79 4.45
274 275 4.332543 AGAGGGCCCGAACCTGGA 62.333 66.667 18.44 0.00 38.79 3.86
275 276 3.090532 GAGGGCCCGAACCTGGAT 61.091 66.667 18.44 0.00 38.79 3.41
276 277 1.764854 GAGGGCCCGAACCTGGATA 60.765 63.158 18.44 0.00 38.79 2.59
277 278 1.307517 AGGGCCCGAACCTGGATAA 60.308 57.895 18.44 0.00 36.85 1.75
278 279 0.917333 AGGGCCCGAACCTGGATAAA 60.917 55.000 18.44 0.00 36.85 1.40
279 280 0.750546 GGGCCCGAACCTGGATAAAC 60.751 60.000 5.69 0.00 0.00 2.01
280 281 0.034863 GGCCCGAACCTGGATAAACA 60.035 55.000 0.00 0.00 0.00 2.83
281 282 1.409661 GGCCCGAACCTGGATAAACAT 60.410 52.381 0.00 0.00 0.00 2.71
282 283 1.947456 GCCCGAACCTGGATAAACATC 59.053 52.381 0.00 0.00 0.00 3.06
283 284 2.210116 CCCGAACCTGGATAAACATCG 58.790 52.381 0.00 0.00 0.00 3.84
284 285 2.419574 CCCGAACCTGGATAAACATCGT 60.420 50.000 0.00 0.00 0.00 3.73
285 286 2.607635 CCGAACCTGGATAAACATCGTG 59.392 50.000 0.00 0.00 0.00 4.35
286 287 3.259064 CGAACCTGGATAAACATCGTGT 58.741 45.455 0.00 0.00 0.00 4.49
287 288 3.306166 CGAACCTGGATAAACATCGTGTC 59.694 47.826 0.00 0.00 0.00 3.67
288 289 3.261981 ACCTGGATAAACATCGTGTCC 57.738 47.619 0.00 0.00 0.00 4.02
289 290 2.093128 ACCTGGATAAACATCGTGTCCC 60.093 50.000 0.00 0.00 0.00 4.46
290 291 2.561569 CTGGATAAACATCGTGTCCCC 58.438 52.381 0.00 0.00 0.00 4.81
291 292 1.210967 TGGATAAACATCGTGTCCCCC 59.789 52.381 0.00 0.00 0.00 5.40
292 293 1.578583 GATAAACATCGTGTCCCCCG 58.421 55.000 0.00 0.00 0.00 5.73
293 294 0.906775 ATAAACATCGTGTCCCCCGT 59.093 50.000 0.00 0.00 0.00 5.28
294 295 0.247185 TAAACATCGTGTCCCCCGTC 59.753 55.000 0.00 0.00 0.00 4.79
295 296 1.477685 AAACATCGTGTCCCCCGTCT 61.478 55.000 0.00 0.00 0.00 4.18
296 297 1.885163 AACATCGTGTCCCCCGTCTC 61.885 60.000 0.00 0.00 0.00 3.36
297 298 2.758737 ATCGTGTCCCCCGTCTCC 60.759 66.667 0.00 0.00 0.00 3.71
298 299 3.298300 ATCGTGTCCCCCGTCTCCT 62.298 63.158 0.00 0.00 0.00 3.69
299 300 3.760035 CGTGTCCCCCGTCTCCTG 61.760 72.222 0.00 0.00 0.00 3.86
300 301 2.603776 GTGTCCCCCGTCTCCTGT 60.604 66.667 0.00 0.00 0.00 4.00
301 302 2.203182 TGTCCCCCGTCTCCTGTT 59.797 61.111 0.00 0.00 0.00 3.16
302 303 0.901580 GTGTCCCCCGTCTCCTGTTA 60.902 60.000 0.00 0.00 0.00 2.41
303 304 0.901580 TGTCCCCCGTCTCCTGTTAC 60.902 60.000 0.00 0.00 0.00 2.50
304 305 1.305549 TCCCCCGTCTCCTGTTACC 60.306 63.158 0.00 0.00 0.00 2.85
305 306 1.611261 CCCCCGTCTCCTGTTACCA 60.611 63.158 0.00 0.00 0.00 3.25
306 307 0.981277 CCCCCGTCTCCTGTTACCAT 60.981 60.000 0.00 0.00 0.00 3.55
307 308 0.464452 CCCCGTCTCCTGTTACCATC 59.536 60.000 0.00 0.00 0.00 3.51
308 309 0.102481 CCCGTCTCCTGTTACCATCG 59.898 60.000 0.00 0.00 0.00 3.84
309 310 1.100510 CCGTCTCCTGTTACCATCGA 58.899 55.000 0.00 0.00 0.00 3.59
310 311 1.681793 CCGTCTCCTGTTACCATCGAT 59.318 52.381 0.00 0.00 0.00 3.59
311 312 2.287668 CCGTCTCCTGTTACCATCGATC 60.288 54.545 0.00 0.00 0.00 3.69
312 313 2.287668 CGTCTCCTGTTACCATCGATCC 60.288 54.545 0.00 0.00 0.00 3.36
313 314 2.959707 GTCTCCTGTTACCATCGATCCT 59.040 50.000 0.00 0.00 0.00 3.24
314 315 4.142790 GTCTCCTGTTACCATCGATCCTA 58.857 47.826 0.00 0.00 0.00 2.94
315 316 4.216687 GTCTCCTGTTACCATCGATCCTAG 59.783 50.000 0.00 0.00 0.00 3.02
316 317 4.104261 TCTCCTGTTACCATCGATCCTAGA 59.896 45.833 0.00 0.00 0.00 2.43
317 318 4.142790 TCCTGTTACCATCGATCCTAGAC 58.857 47.826 0.00 0.00 0.00 2.59
318 319 3.058155 CCTGTTACCATCGATCCTAGACG 60.058 52.174 0.00 0.00 0.00 4.18
319 320 2.292569 TGTTACCATCGATCCTAGACGC 59.707 50.000 0.00 0.00 0.00 5.19
320 321 2.265589 TACCATCGATCCTAGACGCA 57.734 50.000 0.00 0.00 0.00 5.24
321 322 0.669077 ACCATCGATCCTAGACGCAC 59.331 55.000 0.00 0.00 0.00 5.34
322 323 0.668535 CCATCGATCCTAGACGCACA 59.331 55.000 0.00 0.00 0.00 4.57
323 324 1.335415 CCATCGATCCTAGACGCACAG 60.335 57.143 0.00 0.00 0.00 3.66
324 325 1.335182 CATCGATCCTAGACGCACAGT 59.665 52.381 0.00 0.00 0.00 3.55
325 326 1.460504 TCGATCCTAGACGCACAGTT 58.539 50.000 0.00 0.00 0.00 3.16
326 327 1.400846 TCGATCCTAGACGCACAGTTC 59.599 52.381 0.00 0.00 0.00 3.01
327 328 1.828832 GATCCTAGACGCACAGTTCG 58.171 55.000 0.00 0.00 0.00 3.95
328 329 0.456221 ATCCTAGACGCACAGTTCGG 59.544 55.000 0.00 0.00 0.00 4.30
329 330 1.153823 CCTAGACGCACAGTTCGGG 60.154 63.158 0.00 0.00 0.00 5.14
330 331 1.592400 CCTAGACGCACAGTTCGGGA 61.592 60.000 0.00 0.00 0.00 5.14
331 332 0.456312 CTAGACGCACAGTTCGGGAC 60.456 60.000 0.00 0.00 0.00 4.46
332 333 1.870055 TAGACGCACAGTTCGGGACC 61.870 60.000 0.00 0.00 0.00 4.46
333 334 4.309950 ACGCACAGTTCGGGACCC 62.310 66.667 0.00 0.00 0.00 4.46
335 336 3.637273 GCACAGTTCGGGACCCCT 61.637 66.667 4.46 0.00 0.00 4.79
336 337 2.288025 GCACAGTTCGGGACCCCTA 61.288 63.158 4.46 0.00 0.00 3.53
337 338 1.595357 CACAGTTCGGGACCCCTAC 59.405 63.158 4.46 3.06 0.00 3.18
338 339 1.611556 ACAGTTCGGGACCCCTACC 60.612 63.158 4.46 0.00 0.00 3.18
339 340 2.040114 AGTTCGGGACCCCTACCC 59.960 66.667 4.46 0.00 43.57 3.69
344 345 2.613421 GGGACCCCTACCCGAGAT 59.387 66.667 0.00 0.00 37.85 2.75
345 346 1.533513 GGGACCCCTACCCGAGATC 60.534 68.421 0.00 0.00 37.85 2.75
346 347 1.533513 GGACCCCTACCCGAGATCC 60.534 68.421 0.00 0.00 0.00 3.36
347 348 1.902432 GACCCCTACCCGAGATCCG 60.902 68.421 0.00 0.00 38.18 4.18
348 349 3.303928 CCCCTACCCGAGATCCGC 61.304 72.222 0.00 0.00 36.84 5.54
349 350 3.303928 CCCTACCCGAGATCCGCC 61.304 72.222 0.00 0.00 36.84 6.13
350 351 3.671411 CCTACCCGAGATCCGCCG 61.671 72.222 0.00 0.00 36.84 6.46
351 352 3.671411 CTACCCGAGATCCGCCGG 61.671 72.222 0.00 0.00 44.94 6.13
352 353 4.511246 TACCCGAGATCCGCCGGT 62.511 66.667 1.63 11.60 43.93 5.28
354 355 4.157120 CCCGAGATCCGCCGGTTT 62.157 66.667 1.63 0.00 43.93 3.27
355 356 2.125269 CCGAGATCCGCCGGTTTT 60.125 61.111 1.63 0.00 40.78 2.43
356 357 2.461110 CCGAGATCCGCCGGTTTTG 61.461 63.158 1.63 0.00 40.78 2.44
357 358 1.447140 CGAGATCCGCCGGTTTTGA 60.447 57.895 1.63 0.00 0.00 2.69
358 359 1.693083 CGAGATCCGCCGGTTTTGAC 61.693 60.000 1.63 0.00 0.00 3.18
359 360 0.672401 GAGATCCGCCGGTTTTGACA 60.672 55.000 1.63 0.00 0.00 3.58
360 361 0.953960 AGATCCGCCGGTTTTGACAC 60.954 55.000 1.63 0.00 0.00 3.67
361 362 1.918868 GATCCGCCGGTTTTGACACC 61.919 60.000 1.63 0.00 0.00 4.16
408 409 2.980568 TGTCGCCGATTTGGTTATTCT 58.019 42.857 0.00 0.00 41.21 2.40
422 423 2.561733 TATTCTGTCGACTTGAGCGG 57.438 50.000 17.92 0.00 0.00 5.52
427 428 0.039437 TGTCGACTTGAGCGGAAGTC 60.039 55.000 17.92 16.70 45.73 3.01
433 434 1.819903 ACTTGAGCGGAAGTCTAGGTC 59.180 52.381 0.00 0.00 29.85 3.85
439 440 2.025155 GCGGAAGTCTAGGTCTGATCA 58.975 52.381 0.00 0.00 0.00 2.92
460 461 6.373005 TCAACCCAATGTCATCTTCTTCTA 57.627 37.500 0.00 0.00 0.00 2.10
461 462 6.962182 TCAACCCAATGTCATCTTCTTCTAT 58.038 36.000 0.00 0.00 0.00 1.98
484 485 0.319383 CCATGGATCCTTCGAGCTCG 60.319 60.000 30.03 30.03 41.45 5.03
494 495 4.544689 CGAGCTCGACCTCGCTGG 62.545 72.222 32.06 4.70 46.69 4.85
495 496 4.863925 GAGCTCGACCTCGCTGGC 62.864 72.222 0.00 0.00 40.22 4.85
512 513 2.551270 TGGCACTTCCAGGTAGAGATT 58.449 47.619 0.00 0.00 40.72 2.40
515 516 2.911484 CACTTCCAGGTAGAGATTGGC 58.089 52.381 0.00 0.00 31.94 4.52
520 521 2.771943 TCCAGGTAGAGATTGGCGAATT 59.228 45.455 0.00 0.00 31.94 2.17
544 545 1.788258 CTGCCTATGTGGATGCTACG 58.212 55.000 0.00 0.00 38.35 3.51
554 555 3.244078 TGTGGATGCTACGTTCTTGTTCT 60.244 43.478 0.00 0.00 0.00 3.01
592 593 0.890542 GCAATATCGGCTGGCCATCA 60.891 55.000 5.51 0.00 35.37 3.07
642 643 1.905894 TGACTTCCCGATGAATGGACA 59.094 47.619 0.00 0.00 31.06 4.02
677 680 3.758554 GGTGGATGTTCTTGTAATGCTGT 59.241 43.478 0.00 0.00 0.00 4.40
683 687 5.826601 TGTTCTTGTAATGCTGTTGTTCA 57.173 34.783 0.00 0.00 0.00 3.18
785 789 8.352137 TCAGATTTTGCATAAGAAGATCCAAA 57.648 30.769 0.00 0.00 0.00 3.28
789 793 8.712285 ATTTTGCATAAGAAGATCCAAACATG 57.288 30.769 0.00 0.00 0.00 3.21
826 830 5.276461 TCTGAAGCGCCAAGATAATAAGA 57.724 39.130 2.29 0.00 0.00 2.10
931 939 8.421249 ACAAGACCATCTCCATTTTAAATGAA 57.579 30.769 18.13 0.00 0.00 2.57
932 940 8.306761 ACAAGACCATCTCCATTTTAAATGAAC 58.693 33.333 18.13 2.17 0.00 3.18
976 985 8.433126 GCTCATCGTTGTGTGTATATATAAACC 58.567 37.037 10.07 3.44 0.00 3.27
1158 1171 2.758327 ACGTGCATCCCGAGGCTA 60.758 61.111 1.86 0.00 39.14 3.93
1538 1554 1.969809 TTGCACGCGTGATCTGCATC 61.970 55.000 41.19 21.33 40.52 3.91
1837 1857 1.270465 CCGCTGGAGTCATGCATGATA 60.270 52.381 30.89 16.74 39.30 2.15
1841 1861 3.400255 CTGGAGTCATGCATGATACAGG 58.600 50.000 30.89 17.39 39.30 4.00
1875 1895 1.838112 AATCGGTTGATGGTGCACAT 58.162 45.000 20.43 10.28 44.18 3.21
1895 1915 2.950781 TGCACCAACAGTTTTGGGATA 58.049 42.857 12.62 0.00 43.71 2.59
1896 1916 2.890311 TGCACCAACAGTTTTGGGATAG 59.110 45.455 12.62 1.25 43.71 2.08
1903 1923 5.304357 CCAACAGTTTTGGGATAGGTTTTCT 59.696 40.000 0.00 0.00 35.96 2.52
1906 1926 6.246163 ACAGTTTTGGGATAGGTTTTCTAGG 58.754 40.000 0.00 0.00 0.00 3.02
1913 1933 7.947782 TGGGATAGGTTTTCTAGGTGATATT 57.052 36.000 0.00 0.00 0.00 1.28
1921 1941 7.995488 AGGTTTTCTAGGTGATATTCTTCCATG 59.005 37.037 0.00 0.00 0.00 3.66
1922 1942 7.775561 GGTTTTCTAGGTGATATTCTTCCATGT 59.224 37.037 0.00 0.00 0.00 3.21
1978 1998 2.602211 CTGTGCTTGATCAGACGATGAC 59.398 50.000 0.00 0.00 41.91 3.06
1984 2004 0.924090 GATCAGACGATGACGGTTGC 59.076 55.000 0.00 0.00 41.91 4.17
2045 2065 1.066858 CACAAGGCTACGTCACAGGAT 60.067 52.381 0.00 0.00 0.00 3.24
2076 2096 2.496899 ACTGGTGTTGGGATCATGTC 57.503 50.000 0.00 0.00 0.00 3.06
2112 2403 1.212751 GGGTTTCGGTCAGCAATGC 59.787 57.895 0.00 0.00 0.00 3.56
2125 2416 5.226396 GTCAGCAATGCTCGATAATAGAGT 58.774 41.667 4.03 0.00 36.40 3.24
2137 2428 0.469917 AATAGAGTGGATGCACGGGG 59.530 55.000 12.02 0.00 0.00 5.73
2271 2562 0.625849 AAACTGATGGTGGCTAGGGG 59.374 55.000 0.00 0.00 0.00 4.79
2272 2563 1.926426 AACTGATGGTGGCTAGGGGC 61.926 60.000 0.00 0.00 40.90 5.80
2273 2564 2.286045 TGATGGTGGCTAGGGGCA 60.286 61.111 0.00 0.00 45.89 5.36
2282 2573 3.854669 CTAGGGGCAGTGGCGGAG 61.855 72.222 10.99 3.77 42.47 4.63
2295 2586 4.571250 CGGAGCTACGTGCAAGAA 57.429 55.556 11.15 0.00 45.94 2.52
2296 2587 2.822306 CGGAGCTACGTGCAAGAAA 58.178 52.632 11.15 0.00 45.94 2.52
2297 2588 1.144969 CGGAGCTACGTGCAAGAAAA 58.855 50.000 11.15 0.00 45.94 2.29
2298 2589 1.529438 CGGAGCTACGTGCAAGAAAAA 59.471 47.619 11.15 0.00 45.94 1.94
2299 2590 2.661979 CGGAGCTACGTGCAAGAAAAAC 60.662 50.000 11.15 0.00 45.94 2.43
2300 2591 2.350484 GGAGCTACGTGCAAGAAAAACC 60.350 50.000 6.65 0.73 45.94 3.27
2301 2592 1.263217 AGCTACGTGCAAGAAAAACCG 59.737 47.619 6.65 0.00 45.94 4.44
2302 2593 1.662026 GCTACGTGCAAGAAAAACCGG 60.662 52.381 6.65 0.00 42.31 5.28
2303 2594 0.945813 TACGTGCAAGAAAAACCGGG 59.054 50.000 6.32 0.00 0.00 5.73
2304 2595 1.660264 CGTGCAAGAAAAACCGGGC 60.660 57.895 6.32 0.00 0.00 6.13
2305 2596 1.739667 GTGCAAGAAAAACCGGGCT 59.260 52.632 6.32 0.00 0.00 5.19
2306 2597 0.597377 GTGCAAGAAAAACCGGGCTG 60.597 55.000 6.32 0.00 0.00 4.85
2307 2598 1.040339 TGCAAGAAAAACCGGGCTGT 61.040 50.000 6.32 0.00 0.00 4.40
2308 2599 0.597377 GCAAGAAAAACCGGGCTGTG 60.597 55.000 6.32 0.00 0.00 3.66
2309 2600 0.031994 CAAGAAAAACCGGGCTGTGG 59.968 55.000 6.32 0.00 0.00 4.17
2310 2601 1.744320 AAGAAAAACCGGGCTGTGGC 61.744 55.000 6.32 0.00 37.82 5.01
2321 2612 4.101448 CTGTGGCCCGCCTAGCTT 62.101 66.667 7.35 0.00 36.94 3.74
2322 2613 3.628646 CTGTGGCCCGCCTAGCTTT 62.629 63.158 7.35 0.00 36.94 3.51
2323 2614 3.134127 GTGGCCCGCCTAGCTTTG 61.134 66.667 7.35 0.00 36.94 2.77
2325 2616 4.803908 GGCCCGCCTAGCTTTGCT 62.804 66.667 0.00 0.00 43.41 3.91
2326 2617 3.512516 GCCCGCCTAGCTTTGCTG 61.513 66.667 0.00 0.00 40.10 4.41
2327 2618 3.512516 CCCGCCTAGCTTTGCTGC 61.513 66.667 0.00 0.00 40.10 5.25
2328 2619 2.747460 CCGCCTAGCTTTGCTGCA 60.747 61.111 0.00 0.00 40.10 4.41
2329 2620 2.334946 CCGCCTAGCTTTGCTGCAA 61.335 57.895 11.69 11.69 40.10 4.08
2330 2621 1.580942 CGCCTAGCTTTGCTGCAAA 59.419 52.632 24.68 24.68 40.10 3.68
2331 2622 0.039256 CGCCTAGCTTTGCTGCAAAA 60.039 50.000 25.93 12.61 40.10 2.44
2332 2623 1.602668 CGCCTAGCTTTGCTGCAAAAA 60.603 47.619 25.93 14.61 40.10 1.94
2333 2624 2.064014 GCCTAGCTTTGCTGCAAAAAG 58.936 47.619 25.93 21.29 40.10 2.27
2334 2625 2.288395 GCCTAGCTTTGCTGCAAAAAGA 60.288 45.455 25.93 13.85 40.10 2.52
2335 2626 3.572584 CCTAGCTTTGCTGCAAAAAGAG 58.427 45.455 25.93 20.62 40.10 2.85
2336 2627 3.005155 CCTAGCTTTGCTGCAAAAAGAGT 59.995 43.478 25.93 12.61 40.10 3.24
2337 2628 4.216257 CCTAGCTTTGCTGCAAAAAGAGTA 59.784 41.667 25.93 12.99 40.10 2.59
2338 2629 4.234530 AGCTTTGCTGCAAAAAGAGTAG 57.765 40.909 25.93 14.86 37.57 2.57
2339 2630 3.005155 AGCTTTGCTGCAAAAAGAGTAGG 59.995 43.478 25.93 14.10 37.57 3.18
2340 2631 3.311966 CTTTGCTGCAAAAAGAGTAGGC 58.688 45.455 25.93 0.00 36.88 3.93
2341 2632 1.247567 TGCTGCAAAAAGAGTAGGCC 58.752 50.000 0.00 0.00 0.00 5.19
2342 2633 1.202927 TGCTGCAAAAAGAGTAGGCCT 60.203 47.619 11.78 11.78 0.00 5.19
2343 2634 2.039746 TGCTGCAAAAAGAGTAGGCCTA 59.960 45.455 8.91 8.91 0.00 3.93
2344 2635 3.081804 GCTGCAAAAAGAGTAGGCCTAA 58.918 45.455 15.83 0.00 0.00 2.69
2345 2636 3.127721 GCTGCAAAAAGAGTAGGCCTAAG 59.872 47.826 15.83 5.19 0.00 2.18
2346 2637 3.686016 TGCAAAAAGAGTAGGCCTAAGG 58.314 45.455 15.83 0.00 0.00 2.69
2347 2638 3.017442 GCAAAAAGAGTAGGCCTAAGGG 58.983 50.000 15.83 0.00 0.00 3.95
2348 2639 3.561528 GCAAAAAGAGTAGGCCTAAGGGT 60.562 47.826 15.83 0.00 34.45 4.34
2349 2640 4.324022 GCAAAAAGAGTAGGCCTAAGGGTA 60.324 45.833 15.83 0.00 34.45 3.69
2350 2641 5.805424 GCAAAAAGAGTAGGCCTAAGGGTAA 60.805 44.000 15.83 0.00 34.45 2.85
2351 2642 6.243148 CAAAAAGAGTAGGCCTAAGGGTAAA 58.757 40.000 15.83 0.00 34.45 2.01
2352 2643 6.653790 AAAAGAGTAGGCCTAAGGGTAAAT 57.346 37.500 15.83 0.00 34.45 1.40
2353 2644 5.890752 AAGAGTAGGCCTAAGGGTAAATC 57.109 43.478 15.83 0.71 34.45 2.17
2354 2645 5.159139 AGAGTAGGCCTAAGGGTAAATCT 57.841 43.478 15.83 3.51 34.45 2.40
2355 2646 6.290870 AGAGTAGGCCTAAGGGTAAATCTA 57.709 41.667 15.83 0.00 34.45 1.98
2356 2647 6.316513 AGAGTAGGCCTAAGGGTAAATCTAG 58.683 44.000 15.83 0.00 34.45 2.43
2357 2648 5.404395 AGTAGGCCTAAGGGTAAATCTAGG 58.596 45.833 15.83 0.00 34.45 3.02
2358 2649 2.980379 AGGCCTAAGGGTAAATCTAGGC 59.020 50.000 1.29 9.95 46.73 3.93
2360 2651 4.432980 GCCTAAGGGTAAATCTAGGCAA 57.567 45.455 12.90 0.00 46.70 4.52
2361 2652 4.986783 GCCTAAGGGTAAATCTAGGCAAT 58.013 43.478 12.90 0.00 46.70 3.56
2362 2653 4.762251 GCCTAAGGGTAAATCTAGGCAATG 59.238 45.833 12.90 0.00 46.70 2.82
2363 2654 5.690364 GCCTAAGGGTAAATCTAGGCAATGT 60.690 44.000 12.90 0.00 46.70 2.71
2364 2655 6.365520 CCTAAGGGTAAATCTAGGCAATGTT 58.634 40.000 0.00 0.00 0.00 2.71
2365 2656 6.833933 CCTAAGGGTAAATCTAGGCAATGTTT 59.166 38.462 0.00 0.00 0.00 2.83
2366 2657 6.530019 AAGGGTAAATCTAGGCAATGTTTG 57.470 37.500 0.00 0.00 0.00 2.93
2381 2672 6.499356 CAATGTTTGCAAGAAAATTTTGGC 57.501 33.333 8.47 9.65 0.00 4.52
2382 2673 5.831702 ATGTTTGCAAGAAAATTTTGGCA 57.168 30.435 8.47 12.08 0.00 4.92
2383 2674 5.232610 TGTTTGCAAGAAAATTTTGGCAG 57.767 34.783 8.47 0.00 0.00 4.85
2384 2675 3.967203 TTGCAAGAAAATTTTGGCAGC 57.033 38.095 8.47 7.59 0.00 5.25
2385 2676 2.220313 TGCAAGAAAATTTTGGCAGCC 58.780 42.857 8.47 3.66 0.00 4.85
2386 2677 2.158784 TGCAAGAAAATTTTGGCAGCCT 60.159 40.909 14.15 0.00 0.00 4.58
2387 2678 2.880268 GCAAGAAAATTTTGGCAGCCTT 59.120 40.909 14.15 1.43 0.00 4.35
2388 2679 3.316029 GCAAGAAAATTTTGGCAGCCTTT 59.684 39.130 14.15 3.92 0.00 3.11
2389 2680 4.514816 GCAAGAAAATTTTGGCAGCCTTTA 59.485 37.500 14.15 0.00 0.00 1.85
2390 2681 5.334337 GCAAGAAAATTTTGGCAGCCTTTAG 60.334 40.000 14.15 0.00 0.00 1.85
2391 2682 4.318332 AGAAAATTTTGGCAGCCTTTAGC 58.682 39.130 14.15 1.32 44.25 3.09
2400 2691 3.826754 GCCTTTAGCTTGGCCCGC 61.827 66.667 0.00 2.42 43.11 6.13
2401 2692 3.140814 CCTTTAGCTTGGCCCGCC 61.141 66.667 10.23 0.00 0.00 6.13
2402 2693 3.140814 CTTTAGCTTGGCCCGCCC 61.141 66.667 10.23 0.00 34.56 6.13
2403 2694 3.645268 CTTTAGCTTGGCCCGCCCT 62.645 63.158 10.23 0.00 34.56 5.19
2404 2695 3.936772 TTTAGCTTGGCCCGCCCTG 62.937 63.158 10.23 0.00 34.56 4.45
2412 2703 4.344865 GCCCGCCCTGGACTTTGA 62.345 66.667 0.00 0.00 42.00 2.69
2413 2704 2.677228 CCCGCCCTGGACTTTGAT 59.323 61.111 0.00 0.00 42.00 2.57
2414 2705 1.000896 CCCGCCCTGGACTTTGATT 60.001 57.895 0.00 0.00 42.00 2.57
2415 2706 1.032114 CCCGCCCTGGACTTTGATTC 61.032 60.000 0.00 0.00 42.00 2.52
2416 2707 0.035056 CCGCCCTGGACTTTGATTCT 60.035 55.000 0.00 0.00 42.00 2.40
2417 2708 1.209504 CCGCCCTGGACTTTGATTCTA 59.790 52.381 0.00 0.00 42.00 2.10
2418 2709 2.555199 CGCCCTGGACTTTGATTCTAG 58.445 52.381 0.00 0.00 0.00 2.43
2419 2710 2.293170 GCCCTGGACTTTGATTCTAGC 58.707 52.381 0.00 0.00 0.00 3.42
2420 2711 2.092699 GCCCTGGACTTTGATTCTAGCT 60.093 50.000 0.00 0.00 0.00 3.32
2421 2712 3.802866 CCCTGGACTTTGATTCTAGCTC 58.197 50.000 0.00 0.00 0.00 4.09
2422 2713 3.432890 CCCTGGACTTTGATTCTAGCTCC 60.433 52.174 0.00 0.00 0.00 4.70
2423 2714 3.452474 CTGGACTTTGATTCTAGCTCCG 58.548 50.000 0.00 0.00 0.00 4.63
2424 2715 2.205911 GGACTTTGATTCTAGCTCCGC 58.794 52.381 0.00 0.00 0.00 5.54
2425 2716 2.205911 GACTTTGATTCTAGCTCCGCC 58.794 52.381 0.00 0.00 0.00 6.13
2426 2717 1.555075 ACTTTGATTCTAGCTCCGCCA 59.445 47.619 0.00 0.00 0.00 5.69
2427 2718 2.208431 CTTTGATTCTAGCTCCGCCAG 58.792 52.381 0.00 0.00 0.00 4.85
2428 2719 1.195115 TTGATTCTAGCTCCGCCAGT 58.805 50.000 0.00 0.00 0.00 4.00
2429 2720 0.461548 TGATTCTAGCTCCGCCAGTG 59.538 55.000 0.00 0.00 0.00 3.66
2430 2721 0.249657 GATTCTAGCTCCGCCAGTGG 60.250 60.000 4.20 4.20 0.00 4.00
2431 2722 2.317149 ATTCTAGCTCCGCCAGTGGC 62.317 60.000 25.07 25.07 46.75 5.01
2461 2752 0.455815 ATGTCGCGTGCTACATGAGA 59.544 50.000 10.73 0.00 35.06 3.27
2474 2765 1.918293 ATGAGAGTGGAACCGGCCA 60.918 57.895 0.00 0.00 37.80 5.36
2476 2767 2.526873 AGAGTGGAACCGGCCAGT 60.527 61.111 8.08 8.08 44.17 4.00
2488 2779 0.322997 CGGCCAGTTGGGATTTGGTA 60.323 55.000 2.24 0.00 40.01 3.25
2560 2852 3.677700 GCATTGTGCACATGATGTCCATT 60.678 43.478 25.08 0.00 44.26 3.16
2562 2854 3.579335 TGTGCACATGATGTCCATTTG 57.421 42.857 17.42 0.00 36.33 2.32
2618 2910 1.449070 GTTGGTAGGCCAGTACCGC 60.449 63.158 14.72 7.88 46.91 5.68
2648 2941 1.295423 CTAACCTCCCACCACCGTG 59.705 63.158 0.00 0.00 39.91 4.94
2659 2952 1.208535 CACCACCGTGCCCTTTCTATA 59.791 52.381 0.00 0.00 32.04 1.31
2674 2967 7.724061 GCCCTTTCTATATTGGTTTCTTATCCA 59.276 37.037 0.00 0.00 0.00 3.41
2675 2968 9.067986 CCCTTTCTATATTGGTTTCTTATCCAC 57.932 37.037 0.00 0.00 33.12 4.02
2708 3001 3.782523 TCCTCTGCACTATTTCCTTCCAT 59.217 43.478 0.00 0.00 0.00 3.41
2742 3035 4.216902 TCCTAACGACGAAAGATCACAGAA 59.783 41.667 0.00 0.00 0.00 3.02
2760 3053 9.708092 ATCACAGAACTAACTTTCCTAACTTAC 57.292 33.333 0.00 0.00 0.00 2.34
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 0.753479 TTGCCTTTCACGCCAAGGAA 60.753 50.000 11.18 0.00 43.32 3.36
1 2 1.152860 TTGCCTTTCACGCCAAGGA 60.153 52.632 11.18 0.00 43.32 3.36
2 3 1.286880 CTTGCCTTTCACGCCAAGG 59.713 57.895 3.93 3.93 43.47 3.61
3 4 1.372128 GCTTGCCTTTCACGCCAAG 60.372 57.895 0.00 0.00 34.23 3.61
4 5 0.536233 TAGCTTGCCTTTCACGCCAA 60.536 50.000 0.00 0.00 40.46 4.52
5 6 0.955428 CTAGCTTGCCTTTCACGCCA 60.955 55.000 0.00 0.00 40.46 5.69
6 7 1.648467 CCTAGCTTGCCTTTCACGCC 61.648 60.000 0.00 0.00 40.46 5.68
7 8 1.796796 CCTAGCTTGCCTTTCACGC 59.203 57.895 0.00 0.00 39.95 5.34
8 9 1.796796 GCCTAGCTTGCCTTTCACG 59.203 57.895 0.00 0.00 0.00 4.35
9 10 0.673644 TCGCCTAGCTTGCCTTTCAC 60.674 55.000 0.00 0.00 0.00 3.18
10 11 0.673644 GTCGCCTAGCTTGCCTTTCA 60.674 55.000 0.00 0.00 0.00 2.69
11 12 1.369839 GGTCGCCTAGCTTGCCTTTC 61.370 60.000 0.00 0.00 0.00 2.62
12 13 1.377333 GGTCGCCTAGCTTGCCTTT 60.377 57.895 0.00 0.00 0.00 3.11
13 14 2.269241 GGTCGCCTAGCTTGCCTT 59.731 61.111 0.00 0.00 0.00 4.35
14 15 3.003173 TGGTCGCCTAGCTTGCCT 61.003 61.111 0.00 0.00 0.00 4.75
15 16 2.512515 CTGGTCGCCTAGCTTGCC 60.513 66.667 0.00 0.00 0.00 4.52
16 17 3.198489 GCTGGTCGCCTAGCTTGC 61.198 66.667 0.00 0.00 36.99 4.01
20 21 2.507110 TTCACAGCTGGTCGCCTAGC 62.507 60.000 19.93 0.00 40.39 3.42
21 22 0.459237 CTTCACAGCTGGTCGCCTAG 60.459 60.000 19.93 1.51 40.39 3.02
22 23 0.898326 TCTTCACAGCTGGTCGCCTA 60.898 55.000 19.93 0.00 40.39 3.93
23 24 1.548357 ATCTTCACAGCTGGTCGCCT 61.548 55.000 19.93 0.00 40.39 5.52
24 25 0.674895 AATCTTCACAGCTGGTCGCC 60.675 55.000 19.93 0.00 40.39 5.54
25 26 0.723981 GAATCTTCACAGCTGGTCGC 59.276 55.000 19.93 0.00 39.57 5.19
26 27 1.066573 AGGAATCTTCACAGCTGGTCG 60.067 52.381 19.93 6.18 0.00 4.79
27 28 2.777832 AGGAATCTTCACAGCTGGTC 57.222 50.000 19.93 3.33 0.00 4.02
28 29 3.064900 GAAGGAATCTTCACAGCTGGT 57.935 47.619 19.93 0.24 46.45 4.00
29 30 3.683802 AAGAAGGAATCTTCACAGCTGG 58.316 45.455 19.93 7.28 45.42 4.85
30 31 6.998968 AATAAGAAGGAATCTTCACAGCTG 57.001 37.500 13.48 13.48 45.42 4.24
31 32 8.951243 GTTAAATAAGAAGGAATCTTCACAGCT 58.049 33.333 8.56 0.00 45.42 4.24
32 33 8.184848 GGTTAAATAAGAAGGAATCTTCACAGC 58.815 37.037 8.56 0.00 45.42 4.40
33 34 8.391106 CGGTTAAATAAGAAGGAATCTTCACAG 58.609 37.037 8.56 0.00 45.42 3.66
34 35 8.098286 TCGGTTAAATAAGAAGGAATCTTCACA 58.902 33.333 8.56 0.00 45.42 3.58
35 36 8.388853 GTCGGTTAAATAAGAAGGAATCTTCAC 58.611 37.037 8.56 0.00 45.42 3.18
36 37 8.319146 AGTCGGTTAAATAAGAAGGAATCTTCA 58.681 33.333 8.56 0.00 45.42 3.02
37 38 8.719560 AGTCGGTTAAATAAGAAGGAATCTTC 57.280 34.615 0.00 0.00 45.42 2.87
39 40 7.093024 TGGAGTCGGTTAAATAAGAAGGAATCT 60.093 37.037 0.00 0.00 41.32 2.40
40 41 7.046033 TGGAGTCGGTTAAATAAGAAGGAATC 58.954 38.462 0.00 0.00 0.00 2.52
41 42 6.954232 TGGAGTCGGTTAAATAAGAAGGAAT 58.046 36.000 0.00 0.00 0.00 3.01
42 43 6.363167 TGGAGTCGGTTAAATAAGAAGGAA 57.637 37.500 0.00 0.00 0.00 3.36
43 44 6.070424 ACATGGAGTCGGTTAAATAAGAAGGA 60.070 38.462 0.00 0.00 0.00 3.36
44 45 6.113411 ACATGGAGTCGGTTAAATAAGAAGG 58.887 40.000 0.00 0.00 0.00 3.46
45 46 7.042658 GCTACATGGAGTCGGTTAAATAAGAAG 60.043 40.741 6.84 0.00 0.00 2.85
46 47 6.759827 GCTACATGGAGTCGGTTAAATAAGAA 59.240 38.462 6.84 0.00 0.00 2.52
47 48 6.278363 GCTACATGGAGTCGGTTAAATAAGA 58.722 40.000 6.84 0.00 0.00 2.10
48 49 5.465724 GGCTACATGGAGTCGGTTAAATAAG 59.534 44.000 6.84 0.00 0.00 1.73
49 50 5.362263 GGCTACATGGAGTCGGTTAAATAA 58.638 41.667 6.84 0.00 0.00 1.40
50 51 4.202284 GGGCTACATGGAGTCGGTTAAATA 60.202 45.833 6.84 0.00 0.00 1.40
51 52 3.433173 GGGCTACATGGAGTCGGTTAAAT 60.433 47.826 6.84 0.00 0.00 1.40
52 53 2.093341 GGGCTACATGGAGTCGGTTAAA 60.093 50.000 6.84 0.00 0.00 1.52
53 54 1.483415 GGGCTACATGGAGTCGGTTAA 59.517 52.381 6.84 0.00 0.00 2.01
54 55 1.117150 GGGCTACATGGAGTCGGTTA 58.883 55.000 6.84 0.00 0.00 2.85
55 56 0.617820 AGGGCTACATGGAGTCGGTT 60.618 55.000 6.84 0.00 0.00 4.44
56 57 0.260816 TAGGGCTACATGGAGTCGGT 59.739 55.000 6.84 0.00 0.00 4.69
57 58 0.962489 CTAGGGCTACATGGAGTCGG 59.038 60.000 6.84 0.00 0.00 4.79
58 59 1.982660 TCTAGGGCTACATGGAGTCG 58.017 55.000 6.84 0.00 0.00 4.18
59 60 3.761752 GAGATCTAGGGCTACATGGAGTC 59.238 52.174 6.84 3.19 0.00 3.36
60 61 3.401002 AGAGATCTAGGGCTACATGGAGT 59.599 47.826 6.84 0.00 0.00 3.85
61 62 4.016444 GAGAGATCTAGGGCTACATGGAG 58.984 52.174 0.00 0.00 0.00 3.86
62 63 3.245443 GGAGAGATCTAGGGCTACATGGA 60.245 52.174 0.00 0.00 0.00 3.41
63 64 3.096092 GGAGAGATCTAGGGCTACATGG 58.904 54.545 0.00 0.00 0.00 3.66
64 65 2.752354 CGGAGAGATCTAGGGCTACATG 59.248 54.545 0.00 0.00 0.00 3.21
65 66 2.291282 CCGGAGAGATCTAGGGCTACAT 60.291 54.545 0.00 0.00 0.00 2.29
66 67 1.074084 CCGGAGAGATCTAGGGCTACA 59.926 57.143 0.00 0.00 0.00 2.74
67 68 1.074244 ACCGGAGAGATCTAGGGCTAC 59.926 57.143 9.46 0.00 0.00 3.58
68 69 1.074084 CACCGGAGAGATCTAGGGCTA 59.926 57.143 9.46 0.00 0.00 3.93
69 70 0.178975 CACCGGAGAGATCTAGGGCT 60.179 60.000 9.46 0.00 0.00 5.19
70 71 0.468400 ACACCGGAGAGATCTAGGGC 60.468 60.000 9.46 0.00 0.00 5.19
71 72 1.144093 AGACACCGGAGAGATCTAGGG 59.856 57.143 9.46 0.00 0.00 3.53
72 73 2.649531 AGACACCGGAGAGATCTAGG 57.350 55.000 9.46 0.00 0.00 3.02
73 74 8.885722 GTTTATATAGACACCGGAGAGATCTAG 58.114 40.741 9.46 0.00 0.00 2.43
74 75 7.828223 GGTTTATATAGACACCGGAGAGATCTA 59.172 40.741 9.46 4.12 0.00 1.98
75 76 6.660094 GGTTTATATAGACACCGGAGAGATCT 59.340 42.308 9.46 1.49 0.00 2.75
76 77 6.403418 CGGTTTATATAGACACCGGAGAGATC 60.403 46.154 15.65 0.00 46.92 2.75
77 78 5.415077 CGGTTTATATAGACACCGGAGAGAT 59.585 44.000 15.65 0.00 46.92 2.75
78 79 4.758674 CGGTTTATATAGACACCGGAGAGA 59.241 45.833 15.65 0.00 46.92 3.10
79 80 5.044428 CGGTTTATATAGACACCGGAGAG 57.956 47.826 15.65 0.00 46.92 3.20
85 86 4.280174 TGCTCTCCGGTTTATATAGACACC 59.720 45.833 0.00 2.59 0.00 4.16
86 87 5.449107 TGCTCTCCGGTTTATATAGACAC 57.551 43.478 0.00 0.00 0.00 3.67
87 88 6.946583 ACTATGCTCTCCGGTTTATATAGACA 59.053 38.462 17.95 7.73 0.00 3.41
88 89 7.393841 ACTATGCTCTCCGGTTTATATAGAC 57.606 40.000 17.95 0.00 0.00 2.59
89 90 6.602406 GGACTATGCTCTCCGGTTTATATAGA 59.398 42.308 17.95 5.89 0.00 1.98
90 91 6.377429 TGGACTATGCTCTCCGGTTTATATAG 59.623 42.308 0.00 8.56 0.00 1.31
91 92 6.250711 TGGACTATGCTCTCCGGTTTATATA 58.749 40.000 0.00 0.00 0.00 0.86
92 93 5.084519 TGGACTATGCTCTCCGGTTTATAT 58.915 41.667 0.00 0.00 0.00 0.86
93 94 4.476297 TGGACTATGCTCTCCGGTTTATA 58.524 43.478 0.00 0.00 0.00 0.98
94 95 3.305720 TGGACTATGCTCTCCGGTTTAT 58.694 45.455 0.00 0.00 0.00 1.40
95 96 2.693591 CTGGACTATGCTCTCCGGTTTA 59.306 50.000 0.00 0.00 0.00 2.01
96 97 1.482593 CTGGACTATGCTCTCCGGTTT 59.517 52.381 0.00 0.00 0.00 3.27
97 98 1.115467 CTGGACTATGCTCTCCGGTT 58.885 55.000 0.00 0.00 0.00 4.44
98 99 0.259065 TCTGGACTATGCTCTCCGGT 59.741 55.000 0.00 0.00 34.83 5.28
99 100 1.626686 ATCTGGACTATGCTCTCCGG 58.373 55.000 0.00 0.00 34.57 5.14
100 101 2.752354 CCTATCTGGACTATGCTCTCCG 59.248 54.545 0.00 0.00 38.35 4.63
101 102 3.096092 CCCTATCTGGACTATGCTCTCC 58.904 54.545 0.00 0.00 38.35 3.71
102 103 3.096092 CCCCTATCTGGACTATGCTCTC 58.904 54.545 0.00 0.00 38.35 3.20
103 104 2.724672 TCCCCTATCTGGACTATGCTCT 59.275 50.000 0.00 0.00 38.35 4.09
104 105 3.176924 TCCCCTATCTGGACTATGCTC 57.823 52.381 0.00 0.00 38.35 4.26
112 113 4.597507 GGTAATGAATGTCCCCTATCTGGA 59.402 45.833 0.00 0.00 38.35 3.86
113 114 4.350816 TGGTAATGAATGTCCCCTATCTGG 59.649 45.833 0.00 0.00 0.00 3.86
114 115 5.567037 TGGTAATGAATGTCCCCTATCTG 57.433 43.478 0.00 0.00 0.00 2.90
115 116 9.749996 ATATATGGTAATGAATGTCCCCTATCT 57.250 33.333 0.00 0.00 0.00 1.98
118 119 9.345254 TGAATATATGGTAATGAATGTCCCCTA 57.655 33.333 0.00 0.00 0.00 3.53
119 120 8.109634 GTGAATATATGGTAATGAATGTCCCCT 58.890 37.037 0.00 0.00 0.00 4.79
120 121 7.888021 TGTGAATATATGGTAATGAATGTCCCC 59.112 37.037 0.00 0.00 0.00 4.81
121 122 8.862325 TGTGAATATATGGTAATGAATGTCCC 57.138 34.615 0.00 0.00 0.00 4.46
131 132 9.769677 AGTCTAGCCTATGTGAATATATGGTAA 57.230 33.333 0.00 0.00 0.00 2.85
132 133 9.769677 AAGTCTAGCCTATGTGAATATATGGTA 57.230 33.333 0.00 0.00 0.00 3.25
133 134 8.671987 AAGTCTAGCCTATGTGAATATATGGT 57.328 34.615 0.00 0.00 0.00 3.55
134 135 8.976353 AGAAGTCTAGCCTATGTGAATATATGG 58.024 37.037 0.00 0.00 0.00 2.74
137 138 8.807118 CCAAGAAGTCTAGCCTATGTGAATATA 58.193 37.037 0.00 0.00 0.00 0.86
138 139 7.256475 CCCAAGAAGTCTAGCCTATGTGAATAT 60.256 40.741 0.00 0.00 0.00 1.28
139 140 6.042093 CCCAAGAAGTCTAGCCTATGTGAATA 59.958 42.308 0.00 0.00 0.00 1.75
140 141 5.163258 CCCAAGAAGTCTAGCCTATGTGAAT 60.163 44.000 0.00 0.00 0.00 2.57
141 142 4.162320 CCCAAGAAGTCTAGCCTATGTGAA 59.838 45.833 0.00 0.00 0.00 3.18
142 143 3.706594 CCCAAGAAGTCTAGCCTATGTGA 59.293 47.826 0.00 0.00 0.00 3.58
143 144 3.452627 ACCCAAGAAGTCTAGCCTATGTG 59.547 47.826 0.00 0.00 0.00 3.21
144 145 3.725634 ACCCAAGAAGTCTAGCCTATGT 58.274 45.455 0.00 0.00 0.00 2.29
145 146 4.762289 AACCCAAGAAGTCTAGCCTATG 57.238 45.455 0.00 0.00 0.00 2.23
146 147 5.163290 GCTAAACCCAAGAAGTCTAGCCTAT 60.163 44.000 0.00 0.00 0.00 2.57
147 148 4.161754 GCTAAACCCAAGAAGTCTAGCCTA 59.838 45.833 0.00 0.00 0.00 3.93
148 149 3.055021 GCTAAACCCAAGAAGTCTAGCCT 60.055 47.826 0.00 0.00 0.00 4.58
149 150 3.271729 GCTAAACCCAAGAAGTCTAGCC 58.728 50.000 0.00 0.00 0.00 3.93
150 151 3.271729 GGCTAAACCCAAGAAGTCTAGC 58.728 50.000 0.00 0.00 0.00 3.42
151 152 4.553330 TGGCTAAACCCAAGAAGTCTAG 57.447 45.455 0.00 0.00 37.83 2.43
152 153 5.514500 AATGGCTAAACCCAAGAAGTCTA 57.486 39.130 0.00 0.00 38.61 2.59
153 154 4.388577 AATGGCTAAACCCAAGAAGTCT 57.611 40.909 0.00 0.00 38.61 3.24
154 155 5.885912 TCATAATGGCTAAACCCAAGAAGTC 59.114 40.000 0.00 0.00 38.61 3.01
155 156 5.826643 TCATAATGGCTAAACCCAAGAAGT 58.173 37.500 0.00 0.00 38.61 3.01
156 157 6.774656 AGATCATAATGGCTAAACCCAAGAAG 59.225 38.462 0.00 0.00 38.61 2.85
157 158 6.672593 AGATCATAATGGCTAAACCCAAGAA 58.327 36.000 0.00 0.00 38.61 2.52
158 159 6.266131 AGATCATAATGGCTAAACCCAAGA 57.734 37.500 0.00 0.00 38.61 3.02
159 160 5.180117 CGAGATCATAATGGCTAAACCCAAG 59.820 44.000 0.00 0.00 38.61 3.61
160 161 5.063204 CGAGATCATAATGGCTAAACCCAA 58.937 41.667 0.00 0.00 38.61 4.12
161 162 4.102524 ACGAGATCATAATGGCTAAACCCA 59.897 41.667 0.00 0.00 39.65 4.51
162 163 4.452455 CACGAGATCATAATGGCTAAACCC 59.548 45.833 0.00 0.00 37.83 4.11
163 164 4.083802 GCACGAGATCATAATGGCTAAACC 60.084 45.833 0.00 0.00 39.84 3.27
164 165 4.752101 AGCACGAGATCATAATGGCTAAAC 59.248 41.667 0.00 0.00 0.00 2.01
165 166 4.960938 AGCACGAGATCATAATGGCTAAA 58.039 39.130 0.00 0.00 0.00 1.85
166 167 4.607293 AGCACGAGATCATAATGGCTAA 57.393 40.909 0.00 0.00 0.00 3.09
167 168 5.010282 TCTAGCACGAGATCATAATGGCTA 58.990 41.667 0.00 0.00 0.00 3.93
168 169 3.829026 TCTAGCACGAGATCATAATGGCT 59.171 43.478 0.00 0.00 0.00 4.75
169 170 4.179926 TCTAGCACGAGATCATAATGGC 57.820 45.455 0.00 0.00 0.00 4.40
178 179 4.400884 ACAAGAGTTGATCTAGCACGAGAT 59.599 41.667 0.00 0.00 37.23 2.75
179 180 3.759086 ACAAGAGTTGATCTAGCACGAGA 59.241 43.478 0.00 0.00 37.23 4.04
180 181 4.103365 ACAAGAGTTGATCTAGCACGAG 57.897 45.455 0.00 0.00 37.23 4.18
181 182 5.638596 TTACAAGAGTTGATCTAGCACGA 57.361 39.130 0.00 0.00 37.23 4.35
182 183 7.197017 AGTATTACAAGAGTTGATCTAGCACG 58.803 38.462 0.00 0.00 37.23 5.34
183 184 8.191446 TGAGTATTACAAGAGTTGATCTAGCAC 58.809 37.037 0.00 0.00 37.23 4.40
184 185 8.293699 TGAGTATTACAAGAGTTGATCTAGCA 57.706 34.615 0.00 0.00 37.23 3.49
205 206 8.784994 GCTTGATTGATCTTGATGAATATGAGT 58.215 33.333 0.00 0.00 0.00 3.41
206 207 8.784043 TGCTTGATTGATCTTGATGAATATGAG 58.216 33.333 0.00 0.00 0.00 2.90
207 208 8.685838 TGCTTGATTGATCTTGATGAATATGA 57.314 30.769 0.00 0.00 0.00 2.15
208 209 8.023706 CCTGCTTGATTGATCTTGATGAATATG 58.976 37.037 0.00 0.00 0.00 1.78
209 210 7.942894 TCCTGCTTGATTGATCTTGATGAATAT 59.057 33.333 0.00 0.00 0.00 1.28
210 211 7.284820 TCCTGCTTGATTGATCTTGATGAATA 58.715 34.615 0.00 0.00 0.00 1.75
211 212 6.127101 TCCTGCTTGATTGATCTTGATGAAT 58.873 36.000 0.00 0.00 0.00 2.57
212 213 5.503002 TCCTGCTTGATTGATCTTGATGAA 58.497 37.500 0.00 0.00 0.00 2.57
213 214 5.106876 TCCTGCTTGATTGATCTTGATGA 57.893 39.130 0.00 0.00 0.00 2.92
214 215 5.357314 ACTTCCTGCTTGATTGATCTTGATG 59.643 40.000 0.00 0.00 0.00 3.07
215 216 5.507637 ACTTCCTGCTTGATTGATCTTGAT 58.492 37.500 0.00 0.00 0.00 2.57
216 217 4.914983 ACTTCCTGCTTGATTGATCTTGA 58.085 39.130 0.00 0.00 0.00 3.02
217 218 5.296283 CCTACTTCCTGCTTGATTGATCTTG 59.704 44.000 0.00 0.00 0.00 3.02
218 219 5.435291 CCTACTTCCTGCTTGATTGATCTT 58.565 41.667 0.00 0.00 0.00 2.40
219 220 4.141528 CCCTACTTCCTGCTTGATTGATCT 60.142 45.833 0.00 0.00 0.00 2.75
220 221 4.133078 CCCTACTTCCTGCTTGATTGATC 58.867 47.826 0.00 0.00 0.00 2.92
221 222 3.525199 ACCCTACTTCCTGCTTGATTGAT 59.475 43.478 0.00 0.00 0.00 2.57
222 223 2.912956 ACCCTACTTCCTGCTTGATTGA 59.087 45.455 0.00 0.00 0.00 2.57
223 224 3.356529 ACCCTACTTCCTGCTTGATTG 57.643 47.619 0.00 0.00 0.00 2.67
224 225 5.717119 AATACCCTACTTCCTGCTTGATT 57.283 39.130 0.00 0.00 0.00 2.57
225 226 5.071923 GGTAATACCCTACTTCCTGCTTGAT 59.928 44.000 0.00 0.00 30.04 2.57
226 227 4.407945 GGTAATACCCTACTTCCTGCTTGA 59.592 45.833 0.00 0.00 30.04 3.02
227 228 4.409247 AGGTAATACCCTACTTCCTGCTTG 59.591 45.833 5.71 0.00 39.75 4.01
228 229 4.632292 AGGTAATACCCTACTTCCTGCTT 58.368 43.478 5.71 0.00 39.75 3.91
229 230 4.282292 AGGTAATACCCTACTTCCTGCT 57.718 45.455 5.71 0.00 39.75 4.24
230 231 4.407945 TGAAGGTAATACCCTACTTCCTGC 59.592 45.833 5.71 0.00 39.75 4.85
231 232 6.749036 ATGAAGGTAATACCCTACTTCCTG 57.251 41.667 5.71 0.00 39.75 3.86
232 233 7.834046 TCTATGAAGGTAATACCCTACTTCCT 58.166 38.462 5.71 0.00 39.75 3.36
233 234 7.949006 TCTCTATGAAGGTAATACCCTACTTCC 59.051 40.741 5.71 0.00 39.75 3.46
234 235 8.937207 TCTCTATGAAGGTAATACCCTACTTC 57.063 38.462 5.71 4.18 39.75 3.01
235 236 7.951245 CCTCTCTATGAAGGTAATACCCTACTT 59.049 40.741 5.71 0.00 39.75 2.24
236 237 7.471890 CCTCTCTATGAAGGTAATACCCTACT 58.528 42.308 5.71 0.00 39.75 2.57
237 238 6.664384 CCCTCTCTATGAAGGTAATACCCTAC 59.336 46.154 5.71 0.00 39.75 3.18
238 239 6.753259 GCCCTCTCTATGAAGGTAATACCCTA 60.753 46.154 5.71 0.00 39.75 3.53
239 240 5.656420 CCCTCTCTATGAAGGTAATACCCT 58.344 45.833 5.71 0.00 39.75 4.34
240 241 4.223255 GCCCTCTCTATGAAGGTAATACCC 59.777 50.000 5.71 0.00 39.75 3.69
241 242 4.223255 GGCCCTCTCTATGAAGGTAATACC 59.777 50.000 0.07 0.07 38.99 2.73
242 243 4.223255 GGGCCCTCTCTATGAAGGTAATAC 59.777 50.000 17.04 0.00 0.00 1.89
243 244 4.426704 GGGCCCTCTCTATGAAGGTAATA 58.573 47.826 17.04 0.00 0.00 0.98
244 245 3.252351 GGGCCCTCTCTATGAAGGTAAT 58.748 50.000 17.04 0.00 0.00 1.89
245 246 2.690840 GGGCCCTCTCTATGAAGGTAA 58.309 52.381 17.04 0.00 0.00 2.85
246 247 1.480683 CGGGCCCTCTCTATGAAGGTA 60.481 57.143 22.43 0.00 0.00 3.08
247 248 0.760945 CGGGCCCTCTCTATGAAGGT 60.761 60.000 22.43 0.00 0.00 3.50
248 249 0.470080 TCGGGCCCTCTCTATGAAGG 60.470 60.000 22.43 0.00 0.00 3.46
249 250 1.069358 GTTCGGGCCCTCTCTATGAAG 59.931 57.143 22.43 0.00 0.00 3.02
250 251 1.120530 GTTCGGGCCCTCTCTATGAA 58.879 55.000 22.43 11.24 0.00 2.57
251 252 0.759436 GGTTCGGGCCCTCTCTATGA 60.759 60.000 22.43 4.41 0.00 2.15
252 253 0.760945 AGGTTCGGGCCCTCTCTATG 60.761 60.000 22.43 1.43 0.00 2.23
253 254 0.760945 CAGGTTCGGGCCCTCTCTAT 60.761 60.000 22.43 0.00 0.00 1.98
254 255 1.381327 CAGGTTCGGGCCCTCTCTA 60.381 63.158 22.43 0.00 0.00 2.43
255 256 2.685380 CAGGTTCGGGCCCTCTCT 60.685 66.667 22.43 9.12 0.00 3.10
256 257 3.787001 CCAGGTTCGGGCCCTCTC 61.787 72.222 22.43 9.34 0.00 3.20
257 258 2.252012 TATCCAGGTTCGGGCCCTCT 62.252 60.000 22.43 9.13 0.00 3.69
258 259 1.342672 TTATCCAGGTTCGGGCCCTC 61.343 60.000 22.43 10.12 0.00 4.30
259 260 0.917333 TTTATCCAGGTTCGGGCCCT 60.917 55.000 22.43 0.00 0.00 5.19
260 261 0.750546 GTTTATCCAGGTTCGGGCCC 60.751 60.000 13.57 13.57 0.00 5.80
261 262 0.034863 TGTTTATCCAGGTTCGGGCC 60.035 55.000 0.00 0.00 0.00 5.80
262 263 1.947456 GATGTTTATCCAGGTTCGGGC 59.053 52.381 0.00 0.00 0.00 6.13
263 264 2.210116 CGATGTTTATCCAGGTTCGGG 58.790 52.381 0.00 0.00 0.00 5.14
264 265 2.607635 CACGATGTTTATCCAGGTTCGG 59.392 50.000 0.00 0.00 0.00 4.30
265 266 3.259064 ACACGATGTTTATCCAGGTTCG 58.741 45.455 0.00 0.00 0.00 3.95
266 267 3.621715 GGACACGATGTTTATCCAGGTTC 59.378 47.826 0.00 0.00 0.00 3.62
267 268 3.606687 GGACACGATGTTTATCCAGGTT 58.393 45.455 0.00 0.00 0.00 3.50
268 269 2.093128 GGGACACGATGTTTATCCAGGT 60.093 50.000 0.00 0.00 0.00 4.00
269 270 2.561569 GGGACACGATGTTTATCCAGG 58.438 52.381 0.00 0.00 0.00 4.45
270 271 2.561569 GGGGACACGATGTTTATCCAG 58.438 52.381 0.00 0.00 0.00 3.86
271 272 1.210967 GGGGGACACGATGTTTATCCA 59.789 52.381 0.00 0.00 0.00 3.41
272 273 1.808891 CGGGGGACACGATGTTTATCC 60.809 57.143 0.00 0.00 0.00 2.59
273 274 1.134610 ACGGGGGACACGATGTTTATC 60.135 52.381 0.00 0.00 34.93 1.75
274 275 0.906775 ACGGGGGACACGATGTTTAT 59.093 50.000 0.00 0.00 34.93 1.40
275 276 0.247185 GACGGGGGACACGATGTTTA 59.753 55.000 0.00 0.00 34.93 2.01
276 277 1.004200 GACGGGGGACACGATGTTT 60.004 57.895 0.00 0.00 34.93 2.83
277 278 1.885163 GAGACGGGGGACACGATGTT 61.885 60.000 0.00 0.00 34.93 2.71
278 279 2.283676 AGACGGGGGACACGATGT 60.284 61.111 0.00 0.00 34.93 3.06
279 280 2.494918 GAGACGGGGGACACGATG 59.505 66.667 0.00 0.00 34.93 3.84
280 281 2.758737 GGAGACGGGGGACACGAT 60.759 66.667 0.00 0.00 34.93 3.73
281 282 3.975591 AGGAGACGGGGGACACGA 61.976 66.667 0.00 0.00 34.93 4.35
282 283 3.760035 CAGGAGACGGGGGACACG 61.760 72.222 0.00 0.00 37.36 4.49
283 284 0.901580 TAACAGGAGACGGGGGACAC 60.902 60.000 0.00 0.00 0.00 3.67
284 285 0.901580 GTAACAGGAGACGGGGGACA 60.902 60.000 0.00 0.00 0.00 4.02
285 286 1.611474 GGTAACAGGAGACGGGGGAC 61.611 65.000 0.00 0.00 0.00 4.46
286 287 1.305549 GGTAACAGGAGACGGGGGA 60.306 63.158 0.00 0.00 0.00 4.81
287 288 1.611261 TGGTAACAGGAGACGGGGG 60.611 63.158 0.00 0.00 46.17 5.40
288 289 4.123571 TGGTAACAGGAGACGGGG 57.876 61.111 0.00 0.00 46.17 5.73
299 300 2.292569 TGCGTCTAGGATCGATGGTAAC 59.707 50.000 0.54 0.00 0.00 2.50
300 301 2.292569 GTGCGTCTAGGATCGATGGTAA 59.707 50.000 0.54 0.00 0.00 2.85
301 302 1.878088 GTGCGTCTAGGATCGATGGTA 59.122 52.381 0.54 0.00 0.00 3.25
302 303 0.669077 GTGCGTCTAGGATCGATGGT 59.331 55.000 0.54 0.00 0.00 3.55
303 304 0.668535 TGTGCGTCTAGGATCGATGG 59.331 55.000 0.54 0.00 0.00 3.51
304 305 1.335182 ACTGTGCGTCTAGGATCGATG 59.665 52.381 0.54 0.00 0.00 3.84
305 306 1.681538 ACTGTGCGTCTAGGATCGAT 58.318 50.000 0.00 0.00 0.00 3.59
306 307 1.400846 GAACTGTGCGTCTAGGATCGA 59.599 52.381 0.00 0.00 0.00 3.59
307 308 1.828832 GAACTGTGCGTCTAGGATCG 58.171 55.000 0.00 0.00 0.00 3.69
308 309 1.534175 CCGAACTGTGCGTCTAGGATC 60.534 57.143 7.51 0.00 0.00 3.36
309 310 0.456221 CCGAACTGTGCGTCTAGGAT 59.544 55.000 7.51 0.00 0.00 3.24
310 311 1.592400 CCCGAACTGTGCGTCTAGGA 61.592 60.000 7.51 0.00 0.00 2.94
311 312 1.153823 CCCGAACTGTGCGTCTAGG 60.154 63.158 7.51 0.00 0.00 3.02
312 313 0.456312 GTCCCGAACTGTGCGTCTAG 60.456 60.000 7.51 0.00 0.00 2.43
313 314 1.582968 GTCCCGAACTGTGCGTCTA 59.417 57.895 7.51 0.00 0.00 2.59
314 315 2.338984 GTCCCGAACTGTGCGTCT 59.661 61.111 7.51 0.00 0.00 4.18
315 316 2.737376 GGTCCCGAACTGTGCGTC 60.737 66.667 7.51 0.00 0.00 5.19
316 317 4.309950 GGGTCCCGAACTGTGCGT 62.310 66.667 7.51 0.00 0.00 5.24
318 319 2.288025 TAGGGGTCCCGAACTGTGC 61.288 63.158 0.48 0.00 41.95 4.57
319 320 1.595357 GTAGGGGTCCCGAACTGTG 59.405 63.158 0.48 0.00 41.95 3.66
320 321 1.611556 GGTAGGGGTCCCGAACTGT 60.612 63.158 0.48 0.00 41.95 3.55
321 322 2.364780 GGGTAGGGGTCCCGAACTG 61.365 68.421 0.48 0.00 41.95 3.16
322 323 2.040114 GGGTAGGGGTCCCGAACT 59.960 66.667 0.48 0.00 41.95 3.01
327 328 1.533513 GATCTCGGGTAGGGGTCCC 60.534 68.421 0.00 0.00 41.41 4.46
328 329 1.533513 GGATCTCGGGTAGGGGTCC 60.534 68.421 0.00 0.00 0.00 4.46
329 330 1.902432 CGGATCTCGGGTAGGGGTC 60.902 68.421 0.00 0.00 34.75 4.46
330 331 2.197875 CGGATCTCGGGTAGGGGT 59.802 66.667 0.00 0.00 34.75 4.95
331 332 3.303928 GCGGATCTCGGGTAGGGG 61.304 72.222 5.87 0.00 39.69 4.79
332 333 3.303928 GGCGGATCTCGGGTAGGG 61.304 72.222 5.87 0.00 39.69 3.53
333 334 3.671411 CGGCGGATCTCGGGTAGG 61.671 72.222 0.00 0.00 39.69 3.18
334 335 3.671411 CCGGCGGATCTCGGGTAG 61.671 72.222 24.41 0.00 42.32 3.18
339 340 1.447140 TCAAAACCGGCGGATCTCG 60.447 57.895 35.78 16.34 42.76 4.04
340 341 0.672401 TGTCAAAACCGGCGGATCTC 60.672 55.000 35.78 16.90 0.00 2.75
341 342 0.953960 GTGTCAAAACCGGCGGATCT 60.954 55.000 35.78 13.84 0.00 2.75
342 343 1.500396 GTGTCAAAACCGGCGGATC 59.500 57.895 35.78 9.52 0.00 3.36
343 344 1.969589 GGTGTCAAAACCGGCGGAT 60.970 57.895 35.78 20.37 0.00 4.18
344 345 2.592287 GGTGTCAAAACCGGCGGA 60.592 61.111 35.78 6.54 0.00 5.54
350 351 1.652563 GGCTGTCGGTGTCAAAACC 59.347 57.895 0.00 0.00 36.82 3.27
351 352 1.278637 CGGCTGTCGGTGTCAAAAC 59.721 57.895 0.00 0.00 34.75 2.43
352 353 3.725819 CGGCTGTCGGTGTCAAAA 58.274 55.556 0.00 0.00 34.75 2.44
364 365 4.641645 TTGGAGCACCACCGGCTG 62.642 66.667 0.85 0.00 46.80 4.85
365 366 4.643387 GTTGGAGCACCACCGGCT 62.643 66.667 0.85 0.00 46.80 5.52
408 409 0.039437 GACTTCCGCTCAAGTCGACA 60.039 55.000 19.50 0.00 42.18 4.35
422 423 3.769844 TGGGTTGATCAGACCTAGACTTC 59.230 47.826 19.77 7.93 37.34 3.01
427 428 4.080919 TGACATTGGGTTGATCAGACCTAG 60.081 45.833 19.77 11.97 37.34 3.02
433 434 5.191426 AGAAGATGACATTGGGTTGATCAG 58.809 41.667 0.00 0.00 0.00 2.90
439 440 6.125029 CCATAGAAGAAGATGACATTGGGTT 58.875 40.000 0.00 0.00 0.00 4.11
460 461 1.061905 TCGAAGGATCCATGGCCCAT 61.062 55.000 15.82 11.81 0.00 4.00
461 462 1.692395 TCGAAGGATCCATGGCCCA 60.692 57.895 15.82 0.08 0.00 5.36
484 485 2.435059 GGAAGTGCCAGCGAGGTC 60.435 66.667 0.00 0.00 40.61 3.85
492 493 2.237143 CAATCTCTACCTGGAAGTGCCA 59.763 50.000 0.00 0.00 46.96 4.92
494 495 2.911484 CCAATCTCTACCTGGAAGTGC 58.089 52.381 0.00 0.00 31.38 4.40
495 496 2.739932 CGCCAATCTCTACCTGGAAGTG 60.740 54.545 0.00 0.00 31.38 3.16
512 513 1.119684 TAGGCAGCTAGAATTCGCCA 58.880 50.000 19.44 6.68 45.47 5.69
515 516 3.062763 CCACATAGGCAGCTAGAATTCG 58.937 50.000 0.00 0.00 0.00 3.34
520 521 1.345741 GCATCCACATAGGCAGCTAGA 59.654 52.381 0.00 0.00 37.29 2.43
544 545 3.369835 CGTAATCGCCAGAACAAGAAC 57.630 47.619 0.00 0.00 0.00 3.01
592 593 2.651455 CCTCTCCATCATGCACATGTT 58.349 47.619 10.27 0.00 39.72 2.71
677 680 9.751542 AACCGATGTTTTGTATTAATTGAACAA 57.248 25.926 0.00 0.00 31.69 2.83
683 687 9.418045 CAAAGGAACCGATGTTTTGTATTAATT 57.582 29.630 0.00 0.00 33.97 1.40
735 739 7.823745 AGAATTAAAGAAAGCTGGTCAAAGA 57.176 32.000 0.00 0.00 0.00 2.52
785 789 7.222611 GCTTCAGAAAATTGTAACAACACATGT 59.777 33.333 0.00 0.00 46.82 3.21
789 793 5.331532 GCGCTTCAGAAAATTGTAACAACAC 60.332 40.000 0.00 0.00 0.00 3.32
796 800 3.818210 TCTTGGCGCTTCAGAAAATTGTA 59.182 39.130 7.64 0.00 0.00 2.41
826 830 2.030274 CGGGAAGGAGAACGCAATTTTT 60.030 45.455 0.00 0.00 0.00 1.94
852 856 2.050350 CAGCCATGCAGGTCCCTTG 61.050 63.158 0.00 0.00 40.61 3.61
957 965 5.179929 GCCGGGGTTTATATATACACACAAC 59.820 44.000 12.26 5.06 0.00 3.32
976 985 1.227556 CGTTTAGATGAGGGCCGGG 60.228 63.158 2.18 0.00 0.00 5.73
1043 1056 2.949106 CTGCTTCGCTGTTGGGTG 59.051 61.111 0.00 0.00 0.00 4.61
1047 1060 1.264020 TGTTTAGCTGCTTCGCTGTTG 59.736 47.619 7.79 0.00 41.12 3.33
1122 1135 4.681978 GCAGTGTTCGCCCGGAGT 62.682 66.667 0.73 0.00 0.00 3.85
1278 1291 3.064987 CTTGGGCGACGACGAGGAT 62.065 63.158 12.29 0.00 42.66 3.24
1303 1316 4.385405 GTGCTGCTGGAGGCGAGT 62.385 66.667 0.00 0.00 45.43 4.18
1368 1381 1.294857 GGTACGACTCGGAGTAGGAC 58.705 60.000 21.33 21.33 34.40 3.85
1538 1554 1.361668 GCTAGTGGCACGTCACATGG 61.362 60.000 12.71 0.00 39.93 3.66
1837 1857 6.212791 ACCGATTTATACTATACATGGCCTGT 59.787 38.462 3.32 8.73 42.13 4.00
1841 1861 8.604035 CATCAACCGATTTATACTATACATGGC 58.396 37.037 0.00 0.00 0.00 4.40
1855 1875 1.614996 TGTGCACCATCAACCGATTT 58.385 45.000 15.69 0.00 0.00 2.17
1860 1880 4.895854 GCATGTGCACCATCAACC 57.104 55.556 15.69 0.00 41.59 3.77
1875 1895 1.786937 ATCCCAAAACTGTTGGTGCA 58.213 45.000 4.50 0.00 37.88 4.57
1885 1905 6.243148 TCACCTAGAAAACCTATCCCAAAAC 58.757 40.000 0.00 0.00 0.00 2.43
1895 1915 7.510675 TGGAAGAATATCACCTAGAAAACCT 57.489 36.000 0.00 0.00 0.00 3.50
1896 1916 7.775561 ACATGGAAGAATATCACCTAGAAAACC 59.224 37.037 0.00 0.00 0.00 3.27
1913 1933 8.421784 GTGGTTACATCTATCTTACATGGAAGA 58.578 37.037 22.61 22.61 39.71 2.87
1921 1941 9.035607 CACATCTTGTGGTTACATCTATCTTAC 57.964 37.037 0.00 0.00 44.27 2.34
2045 2065 1.502690 ACACCAGTTGTCCAGTACCA 58.497 50.000 0.00 0.00 29.79 3.25
2088 2108 0.606604 GCTGACCGAAACCCTACTCA 59.393 55.000 0.00 0.00 0.00 3.41
2112 2403 4.162072 CGTGCATCCACTCTATTATCGAG 58.838 47.826 0.00 0.00 39.86 4.04
2125 2416 2.275089 CAATCCCCCGTGCATCCA 59.725 61.111 0.00 0.00 0.00 3.41
2137 2428 2.305009 CTCATGCCTCCTTTCCAATCC 58.695 52.381 0.00 0.00 0.00 3.01
2271 2562 4.436998 ACGTAGCTCCGCCACTGC 62.437 66.667 0.00 0.00 0.00 4.40
2272 2563 2.507102 CACGTAGCTCCGCCACTG 60.507 66.667 0.00 0.00 0.00 3.66
2273 2564 4.436998 GCACGTAGCTCCGCCACT 62.437 66.667 0.00 0.00 41.15 4.00
2274 2565 4.735132 TGCACGTAGCTCCGCCAC 62.735 66.667 0.00 0.00 45.94 5.01
2275 2566 3.932580 CTTGCACGTAGCTCCGCCA 62.933 63.158 0.00 0.00 45.94 5.69
2276 2567 3.188786 CTTGCACGTAGCTCCGCC 61.189 66.667 0.00 0.00 45.94 6.13
2277 2568 1.289109 TTTCTTGCACGTAGCTCCGC 61.289 55.000 0.00 0.00 45.94 5.54
2278 2569 1.144969 TTTTCTTGCACGTAGCTCCG 58.855 50.000 0.00 0.00 45.94 4.63
2279 2570 2.350484 GGTTTTTCTTGCACGTAGCTCC 60.350 50.000 10.54 0.00 45.94 4.70
2280 2571 2.661979 CGGTTTTTCTTGCACGTAGCTC 60.662 50.000 10.54 0.00 45.94 4.09
2281 2572 1.263217 CGGTTTTTCTTGCACGTAGCT 59.737 47.619 10.54 0.00 45.94 3.32
2282 2573 1.662026 CCGGTTTTTCTTGCACGTAGC 60.662 52.381 0.00 0.00 45.96 3.58
2283 2574 1.069500 CCCGGTTTTTCTTGCACGTAG 60.069 52.381 0.00 0.00 0.00 3.51
2284 2575 0.945813 CCCGGTTTTTCTTGCACGTA 59.054 50.000 0.00 0.00 0.00 3.57
2285 2576 1.731093 CCCGGTTTTTCTTGCACGT 59.269 52.632 0.00 0.00 0.00 4.49
2286 2577 1.660264 GCCCGGTTTTTCTTGCACG 60.660 57.895 0.00 0.00 0.00 5.34
2287 2578 0.597377 CAGCCCGGTTTTTCTTGCAC 60.597 55.000 0.00 0.00 0.00 4.57
2288 2579 1.040339 ACAGCCCGGTTTTTCTTGCA 61.040 50.000 0.00 0.00 0.00 4.08
2289 2580 0.597377 CACAGCCCGGTTTTTCTTGC 60.597 55.000 0.00 0.00 0.00 4.01
2290 2581 0.031994 CCACAGCCCGGTTTTTCTTG 59.968 55.000 0.00 0.00 0.00 3.02
2291 2582 1.744320 GCCACAGCCCGGTTTTTCTT 61.744 55.000 0.00 0.00 0.00 2.52
2292 2583 2.200337 GCCACAGCCCGGTTTTTCT 61.200 57.895 0.00 0.00 0.00 2.52
2293 2584 2.338620 GCCACAGCCCGGTTTTTC 59.661 61.111 0.00 0.00 0.00 2.29
2304 2595 3.628646 AAAGCTAGGCGGGCCACAG 62.629 63.158 12.97 9.49 38.92 3.66
2305 2596 3.646715 AAAGCTAGGCGGGCCACA 61.647 61.111 12.97 0.00 38.92 4.17
2306 2597 3.134127 CAAAGCTAGGCGGGCCAC 61.134 66.667 12.97 0.00 38.92 5.01
2308 2599 4.803908 AGCAAAGCTAGGCGGGCC 62.804 66.667 0.18 0.18 36.99 5.80
2309 2600 3.512516 CAGCAAAGCTAGGCGGGC 61.513 66.667 4.11 0.00 36.40 6.13
2310 2601 3.512516 GCAGCAAAGCTAGGCGGG 61.513 66.667 10.70 6.02 36.40 6.13
2311 2602 1.865788 TTTGCAGCAAAGCTAGGCGG 61.866 55.000 16.93 5.50 36.40 6.13
2312 2603 0.039256 TTTTGCAGCAAAGCTAGGCG 60.039 50.000 19.74 1.62 36.40 5.52
2313 2604 2.064014 CTTTTTGCAGCAAAGCTAGGC 58.936 47.619 19.74 1.43 36.40 3.93
2314 2605 3.005155 ACTCTTTTTGCAGCAAAGCTAGG 59.995 43.478 19.74 12.68 36.40 3.02
2315 2606 4.234530 ACTCTTTTTGCAGCAAAGCTAG 57.765 40.909 19.74 18.36 36.40 3.42
2316 2607 4.216257 CCTACTCTTTTTGCAGCAAAGCTA 59.784 41.667 19.74 9.39 36.40 3.32
2317 2608 3.005155 CCTACTCTTTTTGCAGCAAAGCT 59.995 43.478 19.74 5.59 40.77 3.74
2318 2609 3.311966 CCTACTCTTTTTGCAGCAAAGC 58.688 45.455 19.74 0.00 34.72 3.51
2319 2610 3.311966 GCCTACTCTTTTTGCAGCAAAG 58.688 45.455 19.74 11.37 34.72 2.77
2320 2611 2.035832 GGCCTACTCTTTTTGCAGCAAA 59.964 45.455 16.93 16.93 0.00 3.68
2321 2612 1.613437 GGCCTACTCTTTTTGCAGCAA 59.387 47.619 2.83 2.83 0.00 3.91
2322 2613 1.202927 AGGCCTACTCTTTTTGCAGCA 60.203 47.619 1.29 0.00 0.00 4.41
2323 2614 1.539157 AGGCCTACTCTTTTTGCAGC 58.461 50.000 1.29 0.00 0.00 5.25
2324 2615 3.691609 CCTTAGGCCTACTCTTTTTGCAG 59.308 47.826 13.46 2.71 0.00 4.41
2325 2616 3.561313 CCCTTAGGCCTACTCTTTTTGCA 60.561 47.826 13.46 0.00 0.00 4.08
2326 2617 3.017442 CCCTTAGGCCTACTCTTTTTGC 58.983 50.000 13.46 0.00 0.00 3.68
2327 2618 4.302559 ACCCTTAGGCCTACTCTTTTTG 57.697 45.455 13.46 0.00 36.11 2.44
2328 2619 6.458630 TTTACCCTTAGGCCTACTCTTTTT 57.541 37.500 13.46 0.00 36.11 1.94
2329 2620 6.447409 AGATTTACCCTTAGGCCTACTCTTTT 59.553 38.462 13.46 0.00 36.11 2.27
2330 2621 5.971260 AGATTTACCCTTAGGCCTACTCTTT 59.029 40.000 13.46 0.00 36.11 2.52
2331 2622 5.539842 AGATTTACCCTTAGGCCTACTCTT 58.460 41.667 13.46 0.00 36.11 2.85
2332 2623 5.159139 AGATTTACCCTTAGGCCTACTCT 57.841 43.478 13.46 0.00 36.11 3.24
2333 2624 5.481122 CCTAGATTTACCCTTAGGCCTACTC 59.519 48.000 13.46 0.00 36.11 2.59
2334 2625 5.404395 CCTAGATTTACCCTTAGGCCTACT 58.596 45.833 13.46 5.46 36.11 2.57
2335 2626 4.020396 GCCTAGATTTACCCTTAGGCCTAC 60.020 50.000 13.46 0.00 42.99 3.18
2336 2627 4.165760 GCCTAGATTTACCCTTAGGCCTA 58.834 47.826 8.91 8.91 42.99 3.93
2337 2628 2.980379 GCCTAGATTTACCCTTAGGCCT 59.020 50.000 11.78 11.78 42.99 5.19
2338 2629 2.709397 TGCCTAGATTTACCCTTAGGCC 59.291 50.000 16.31 0.00 46.87 5.19
2340 2631 5.941788 ACATTGCCTAGATTTACCCTTAGG 58.058 41.667 0.00 0.00 40.04 2.69
2341 2632 7.707104 CAAACATTGCCTAGATTTACCCTTAG 58.293 38.462 0.00 0.00 0.00 2.18
2342 2633 7.639113 CAAACATTGCCTAGATTTACCCTTA 57.361 36.000 0.00 0.00 0.00 2.69
2343 2634 6.530019 CAAACATTGCCTAGATTTACCCTT 57.470 37.500 0.00 0.00 0.00 3.95
2358 2649 6.034591 TGCCAAAATTTTCTTGCAAACATTG 58.965 32.000 13.87 0.00 0.00 2.82
2359 2650 6.205101 TGCCAAAATTTTCTTGCAAACATT 57.795 29.167 13.87 0.00 0.00 2.71
2360 2651 5.733937 GCTGCCAAAATTTTCTTGCAAACAT 60.734 36.000 15.92 0.00 0.00 2.71
2361 2652 4.438472 GCTGCCAAAATTTTCTTGCAAACA 60.438 37.500 15.92 0.00 0.00 2.83
2362 2653 4.037021 GCTGCCAAAATTTTCTTGCAAAC 58.963 39.130 15.92 10.10 0.00 2.93
2363 2654 3.066481 GGCTGCCAAAATTTTCTTGCAAA 59.934 39.130 15.17 0.00 0.00 3.68
2364 2655 2.617774 GGCTGCCAAAATTTTCTTGCAA 59.382 40.909 15.17 0.00 0.00 4.08
2365 2656 2.158784 AGGCTGCCAAAATTTTCTTGCA 60.159 40.909 22.65 14.90 0.00 4.08
2366 2657 2.497138 AGGCTGCCAAAATTTTCTTGC 58.503 42.857 22.65 5.18 0.00 4.01
2367 2658 5.334337 GCTAAAGGCTGCCAAAATTTTCTTG 60.334 40.000 22.65 7.33 38.06 3.02
2368 2659 4.756642 GCTAAAGGCTGCCAAAATTTTCTT 59.243 37.500 22.65 0.00 38.06 2.52
2369 2660 4.318332 GCTAAAGGCTGCCAAAATTTTCT 58.682 39.130 22.65 0.00 38.06 2.52
2370 2661 4.668576 GCTAAAGGCTGCCAAAATTTTC 57.331 40.909 22.65 4.71 38.06 2.29
2384 2675 3.140814 GGCGGGCCAAGCTAAAGG 61.141 66.667 19.73 0.00 35.81 3.11
2385 2676 3.140814 GGGCGGGCCAAGCTAAAG 61.141 66.667 16.76 0.00 37.98 1.85
2386 2677 3.657350 AGGGCGGGCCAAGCTAAA 61.657 61.111 23.67 0.00 37.98 1.85
2387 2678 4.424711 CAGGGCGGGCCAAGCTAA 62.425 66.667 23.67 0.00 37.98 3.09
2395 2686 3.645268 ATCAAAGTCCAGGGCGGGC 62.645 63.158 0.00 0.00 41.10 6.13
2396 2687 1.000896 AATCAAAGTCCAGGGCGGG 60.001 57.895 0.00 0.00 34.36 6.13
2397 2688 0.035056 AGAATCAAAGTCCAGGGCGG 60.035 55.000 0.00 0.00 0.00 6.13
2398 2689 2.555199 CTAGAATCAAAGTCCAGGGCG 58.445 52.381 0.00 0.00 0.00 6.13
2399 2690 2.092699 AGCTAGAATCAAAGTCCAGGGC 60.093 50.000 0.00 0.00 0.00 5.19
2400 2691 3.432890 GGAGCTAGAATCAAAGTCCAGGG 60.433 52.174 0.00 0.00 0.00 4.45
2401 2692 3.739519 CGGAGCTAGAATCAAAGTCCAGG 60.740 52.174 0.00 0.00 0.00 4.45
2402 2693 3.452474 CGGAGCTAGAATCAAAGTCCAG 58.548 50.000 0.00 0.00 0.00 3.86
2403 2694 3.526931 CGGAGCTAGAATCAAAGTCCA 57.473 47.619 0.00 0.00 0.00 4.02
2424 2715 1.417890 CATTAGACCCCTAGCCACTGG 59.582 57.143 0.00 0.00 0.00 4.00
2425 2716 2.103263 GACATTAGACCCCTAGCCACTG 59.897 54.545 0.00 0.00 0.00 3.66
2426 2717 2.399580 GACATTAGACCCCTAGCCACT 58.600 52.381 0.00 0.00 0.00 4.00
2427 2718 1.068741 CGACATTAGACCCCTAGCCAC 59.931 57.143 0.00 0.00 0.00 5.01
2428 2719 1.410004 CGACATTAGACCCCTAGCCA 58.590 55.000 0.00 0.00 0.00 4.75
2429 2720 0.033642 GCGACATTAGACCCCTAGCC 59.966 60.000 0.00 0.00 0.00 3.93
2430 2721 0.318784 CGCGACATTAGACCCCTAGC 60.319 60.000 0.00 0.00 0.00 3.42
2431 2722 1.030457 ACGCGACATTAGACCCCTAG 58.970 55.000 15.93 0.00 0.00 3.02
2432 2723 0.742505 CACGCGACATTAGACCCCTA 59.257 55.000 15.93 0.00 0.00 3.53
2433 2724 1.515954 CACGCGACATTAGACCCCT 59.484 57.895 15.93 0.00 0.00 4.79
2434 2725 2.171725 GCACGCGACATTAGACCCC 61.172 63.158 15.93 0.00 0.00 4.95
2435 2726 0.101759 TAGCACGCGACATTAGACCC 59.898 55.000 15.93 0.00 0.00 4.46
2436 2727 1.197910 GTAGCACGCGACATTAGACC 58.802 55.000 15.93 0.00 0.00 3.85
2461 2752 2.113139 CAACTGGCCGGTTCCACT 59.887 61.111 27.57 2.99 31.74 4.00
2474 2765 3.914435 ACACTACCTACCAAATCCCAACT 59.086 43.478 0.00 0.00 0.00 3.16
2476 2767 5.327737 AAACACTACCTACCAAATCCCAA 57.672 39.130 0.00 0.00 0.00 4.12
2488 2779 6.729569 ACTAGGAGATGGTTTAAACACTACCT 59.270 38.462 19.57 19.35 33.05 3.08
2560 2852 4.269183 AGATGCCATATTCGTTTCCACAA 58.731 39.130 0.00 0.00 0.00 3.33
2562 2854 3.251004 GGAGATGCCATATTCGTTTCCAC 59.749 47.826 0.00 0.00 36.34 4.02
2627 2919 2.267961 GTGGTGGGAGGTTAGGCG 59.732 66.667 0.00 0.00 0.00 5.52
2632 2925 4.265056 GCACGGTGGTGGGAGGTT 62.265 66.667 10.60 0.00 44.54 3.50
2648 2941 7.724061 TGGATAAGAAACCAATATAGAAAGGGC 59.276 37.037 0.00 0.00 32.93 5.19
2659 2952 3.732048 ACCGGTGGATAAGAAACCAAT 57.268 42.857 6.12 0.00 37.94 3.16
2674 2967 2.817844 GTGCAGAGGAAAATAAACCGGT 59.182 45.455 0.00 0.00 0.00 5.28
2675 2968 3.081804 AGTGCAGAGGAAAATAAACCGG 58.918 45.455 0.00 0.00 0.00 5.28
2708 3001 4.002982 TCGTCGTTAGGAAAGTGCTAGTA 58.997 43.478 0.00 0.00 0.00 1.82
2742 3035 7.038799 TCGATTGGGTAAGTTAGGAAAGTTAGT 60.039 37.037 0.00 0.00 32.41 2.24
2760 3053 1.367840 GAGGGATCGGTCGATTGGG 59.632 63.158 7.32 0.00 34.60 4.12


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.