Multiple sequence alignment - TraesCS2D01G005500
BLAST Results
Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.
qseqid | sseqid | percentage.identical | alignment.length | no.mismatch | no.gap.openings | qstart | qend | sstart | send | evalue | bitscore | |
---|---|---|---|---|---|---|---|---|---|---|---|---|
0 | TraesCS2D01G005500 | chr2D | 100.000 | 6354 | 0 | 0 | 1 | 6354 | 2889470 | 2895823 | 0.000000e+00 | 11734.0 |
1 | TraesCS2D01G005500 | chr2D | 89.320 | 309 | 33 | 0 | 3599 | 3907 | 598718528 | 598718836 | 7.730000e-104 | 388.0 |
2 | TraesCS2D01G005500 | chr2B | 92.932 | 3834 | 202 | 35 | 98 | 3907 | 8239233 | 8235445 | 0.000000e+00 | 5515.0 |
3 | TraesCS2D01G005500 | chr2B | 92.510 | 3832 | 210 | 33 | 98 | 3907 | 8083756 | 8079980 | 0.000000e+00 | 5415.0 |
4 | TraesCS2D01G005500 | chr2B | 92.410 | 3834 | 218 | 37 | 98 | 3907 | 7913990 | 7910206 | 0.000000e+00 | 5400.0 |
5 | TraesCS2D01G005500 | chr2B | 92.598 | 2837 | 152 | 29 | 98 | 2923 | 7804643 | 7801854 | 0.000000e+00 | 4023.0 |
6 | TraesCS2D01G005500 | chr2B | 93.732 | 2473 | 123 | 20 | 3905 | 6354 | 8235395 | 8232932 | 0.000000e+00 | 3679.0 |
7 | TraesCS2D01G005500 | chr2B | 93.530 | 2473 | 128 | 20 | 3905 | 6354 | 8079930 | 8077467 | 0.000000e+00 | 3651.0 |
8 | TraesCS2D01G005500 | chr2B | 92.473 | 1953 | 106 | 17 | 3905 | 5825 | 7800736 | 7798793 | 0.000000e+00 | 2754.0 |
9 | TraesCS2D01G005500 | chr2B | 93.754 | 1633 | 76 | 10 | 4740 | 6354 | 7909357 | 7907733 | 0.000000e+00 | 2427.0 |
10 | TraesCS2D01G005500 | chr2B | 95.251 | 1074 | 46 | 4 | 2836 | 3907 | 7801856 | 7800786 | 0.000000e+00 | 1696.0 |
11 | TraesCS2D01G005500 | chr2B | 93.835 | 811 | 42 | 7 | 3905 | 4710 | 7910156 | 7909349 | 0.000000e+00 | 1214.0 |
12 | TraesCS2D01G005500 | chr2B | 92.793 | 222 | 12 | 2 | 5901 | 6118 | 7798798 | 7798577 | 1.030000e-82 | 318.0 |
13 | TraesCS2D01G005500 | chr2B | 87.571 | 177 | 17 | 4 | 326 | 502 | 41181016 | 41180845 | 3.880000e-47 | 200.0 |
14 | TraesCS2D01G005500 | chr5D | 83.240 | 716 | 103 | 11 | 5644 | 6354 | 28949819 | 28950522 | 5.370000e-180 | 641.0 |
15 | TraesCS2D01G005500 | chr5D | 85.574 | 305 | 35 | 8 | 5644 | 5943 | 48727341 | 48727641 | 1.720000e-80 | 311.0 |
16 | TraesCS2D01G005500 | chr6A | 84.253 | 616 | 83 | 9 | 5740 | 6354 | 546622846 | 546623448 | 7.100000e-164 | 588.0 |
17 | TraesCS2D01G005500 | chr6A | 87.151 | 179 | 20 | 1 | 319 | 497 | 143068141 | 143067966 | 3.880000e-47 | 200.0 |
18 | TraesCS2D01G005500 | chr5A | 80.992 | 726 | 112 | 14 | 5644 | 6354 | 19682430 | 19683144 | 2.590000e-153 | 553.0 |
19 | TraesCS2D01G005500 | chr6B | 81.168 | 685 | 99 | 15 | 5671 | 6354 | 32003792 | 32004447 | 2.030000e-144 | 523.0 |
20 | TraesCS2D01G005500 | chr2A | 89.032 | 310 | 34 | 0 | 3598 | 3907 | 633949188 | 633948879 | 9.990000e-103 | 385.0 |
21 | TraesCS2D01G005500 | chr2A | 84.639 | 332 | 45 | 3 | 6023 | 6354 | 3792037 | 3791712 | 6.140000e-85 | 326.0 |
22 | TraesCS2D01G005500 | chr2A | 89.286 | 168 | 14 | 3 | 326 | 493 | 628342207 | 628342370 | 2.320000e-49 | 207.0 |
23 | TraesCS2D01G005500 | chr2A | 88.439 | 173 | 15 | 4 | 321 | 493 | 26381743 | 26381576 | 3.000000e-48 | 204.0 |
24 | TraesCS2D01G005500 | chr3A | 88.997 | 309 | 34 | 0 | 3599 | 3907 | 701221320 | 701221012 | 3.590000e-102 | 383.0 |
25 | TraesCS2D01G005500 | chr3A | 79.949 | 389 | 73 | 3 | 1997 | 2381 | 52727928 | 52728315 | 1.350000e-71 | 281.0 |
26 | TraesCS2D01G005500 | chr3A | 79.949 | 389 | 73 | 3 | 1997 | 2381 | 52774228 | 52774615 | 1.350000e-71 | 281.0 |
27 | TraesCS2D01G005500 | chr3A | 79.692 | 389 | 74 | 3 | 1997 | 2381 | 52682073 | 52682460 | 6.270000e-70 | 276.0 |
28 | TraesCS2D01G005500 | chr3A | 79.434 | 389 | 75 | 3 | 1997 | 2381 | 52589739 | 52590126 | 2.920000e-68 | 270.0 |
29 | TraesCS2D01G005500 | chr3A | 79.434 | 389 | 75 | 3 | 1997 | 2381 | 52822120 | 52822507 | 2.920000e-68 | 270.0 |
30 | TraesCS2D01G005500 | chr3A | 78.671 | 286 | 59 | 2 | 5033 | 5317 | 52685707 | 52685991 | 8.410000e-44 | 189.0 |
31 | TraesCS2D01G005500 | chr3A | 78.596 | 285 | 61 | 0 | 5033 | 5317 | 52826010 | 52826294 | 8.410000e-44 | 189.0 |
32 | TraesCS2D01G005500 | chr3A | 78.246 | 285 | 62 | 0 | 5033 | 5317 | 52593553 | 52593837 | 3.910000e-42 | 183.0 |
33 | TraesCS2D01G005500 | chr3A | 78.246 | 285 | 62 | 0 | 5033 | 5317 | 52640087 | 52640371 | 3.910000e-42 | 183.0 |
34 | TraesCS2D01G005500 | chr3A | 78.246 | 285 | 62 | 0 | 5033 | 5317 | 52778142 | 52778426 | 3.910000e-42 | 183.0 |
35 | TraesCS2D01G005500 | chr3A | 84.375 | 160 | 25 | 0 | 2 | 161 | 59925885 | 59926044 | 2.370000e-34 | 158.0 |
36 | TraesCS2D01G005500 | chr3A | 75.874 | 286 | 55 | 8 | 1252 | 1530 | 52589259 | 52589537 | 4.000000e-27 | 134.0 |
37 | TraesCS2D01G005500 | chr3A | 75.874 | 286 | 55 | 8 | 1252 | 1530 | 52635602 | 52635880 | 4.000000e-27 | 134.0 |
38 | TraesCS2D01G005500 | chr3A | 75.874 | 286 | 55 | 8 | 1252 | 1530 | 52681593 | 52681871 | 4.000000e-27 | 134.0 |
39 | TraesCS2D01G005500 | chr3A | 75.874 | 286 | 55 | 7 | 1252 | 1530 | 52821640 | 52821918 | 4.000000e-27 | 134.0 |
40 | TraesCS2D01G005500 | chr3A | 75.524 | 286 | 56 | 8 | 1252 | 1530 | 52727448 | 52727726 | 1.860000e-25 | 128.0 |
41 | TraesCS2D01G005500 | chr3B | 88.050 | 318 | 34 | 3 | 3599 | 3915 | 663132081 | 663132395 | 2.160000e-99 | 374.0 |
42 | TraesCS2D01G005500 | chr1A | 88.050 | 318 | 32 | 4 | 3592 | 3907 | 313906873 | 313906560 | 7.780000e-99 | 372.0 |
43 | TraesCS2D01G005500 | chr1A | 81.319 | 91 | 16 | 1 | 5930 | 6020 | 578215836 | 578215925 | 8.840000e-09 | 73.1 |
44 | TraesCS2D01G005500 | chr7B | 84.366 | 339 | 52 | 1 | 6017 | 6354 | 187595914 | 187596252 | 1.320000e-86 | 331.0 |
45 | TraesCS2D01G005500 | chr5B | 83.784 | 296 | 42 | 5 | 5644 | 5937 | 51218483 | 51218774 | 6.270000e-70 | 276.0 |
46 | TraesCS2D01G005500 | chr4A | 89.017 | 173 | 14 | 3 | 322 | 493 | 625818893 | 625819061 | 6.460000e-50 | 209.0 |
47 | TraesCS2D01G005500 | chr7A | 100.000 | 32 | 0 | 0 | 5574 | 5605 | 135710253 | 135710222 | 6.880000e-05 | 60.2 |
These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.
query | scaffold | start | end | length | rev.comp | avg.bitscore | max.bitscore | avg.percent.identical | query.start | query.end | num_hsp | groupid | homo_length | |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
0 | TraesCS2D01G005500 | chr2D | 2889470 | 2895823 | 6353 | False | 11734.000000 | 11734 | 100.00000 | 1 | 6354 | 1 | chr2D.!!$F1 | 6353 |
1 | TraesCS2D01G005500 | chr2B | 8232932 | 8239233 | 6301 | True | 4597.000000 | 5515 | 93.33200 | 98 | 6354 | 2 | chr2B.!!$R5 | 6256 |
2 | TraesCS2D01G005500 | chr2B | 8077467 | 8083756 | 6289 | True | 4533.000000 | 5415 | 93.02000 | 98 | 6354 | 2 | chr2B.!!$R4 | 6256 |
3 | TraesCS2D01G005500 | chr2B | 7907733 | 7913990 | 6257 | True | 3013.666667 | 5400 | 93.33300 | 98 | 6354 | 3 | chr2B.!!$R3 | 6256 |
4 | TraesCS2D01G005500 | chr2B | 7798577 | 7804643 | 6066 | True | 2197.750000 | 4023 | 93.27875 | 98 | 6118 | 4 | chr2B.!!$R2 | 6020 |
5 | TraesCS2D01G005500 | chr5D | 28949819 | 28950522 | 703 | False | 641.000000 | 641 | 83.24000 | 5644 | 6354 | 1 | chr5D.!!$F1 | 710 |
6 | TraesCS2D01G005500 | chr6A | 546622846 | 546623448 | 602 | False | 588.000000 | 588 | 84.25300 | 5740 | 6354 | 1 | chr6A.!!$F1 | 614 |
7 | TraesCS2D01G005500 | chr5A | 19682430 | 19683144 | 714 | False | 553.000000 | 553 | 80.99200 | 5644 | 6354 | 1 | chr5A.!!$F1 | 710 |
8 | TraesCS2D01G005500 | chr6B | 32003792 | 32004447 | 655 | False | 523.000000 | 523 | 81.16800 | 5671 | 6354 | 1 | chr6B.!!$F1 | 683 |
9 | TraesCS2D01G005500 | chr3A | 52774228 | 52778426 | 4198 | False | 232.000000 | 281 | 79.09750 | 1997 | 5317 | 2 | chr3A.!!$F7 | 3320 |
10 | TraesCS2D01G005500 | chr3A | 52727448 | 52728315 | 867 | False | 204.500000 | 281 | 77.73650 | 1252 | 2381 | 2 | chr3A.!!$F6 | 1129 |
AutoCloner calculated primer pairsThese primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible. |
---|
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability | Orientation |
---|---|---|---|---|---|---|---|---|---|---|
778 | 779 | 0.036010 | ACTTGGGAGGCAGACGATTG | 60.036 | 55.000 | 0.00 | 0.00 | 0.00 | 2.67 | F |
899 | 900 | 0.106918 | TTTTTCACAGACCCACGCCT | 60.107 | 50.000 | 0.00 | 0.00 | 0.00 | 5.52 | F |
900 | 901 | 0.106918 | TTTTCACAGACCCACGCCTT | 60.107 | 50.000 | 0.00 | 0.00 | 0.00 | 4.35 | F |
1029 | 1034 | 0.249676 | CCTCTCATGCTGCTGACACT | 59.750 | 55.000 | 0.00 | 0.00 | 0.00 | 3.55 | F |
2249 | 2316 | 0.320697 | GCGTGTAAGAGGGTGGAAGT | 59.679 | 55.000 | 0.00 | 0.00 | 0.00 | 3.01 | F |
2986 | 3864 | 1.509463 | ACGTATGACATCCGTGCGT | 59.491 | 52.632 | 5.15 | 0.00 | 45.84 | 5.24 | F |
3714 | 5996 | 0.177604 | TTGTGGCCCTTTTGCAACAG | 59.822 | 50.000 | 5.59 | 5.59 | 45.50 | 3.16 | F |
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability | Orientation |
---|---|---|---|---|---|---|---|---|---|---|
2622 | 3415 | 0.106519 | ATGTGTGCTAATCCCAGCCC | 60.107 | 55.000 | 0.0 | 0.0 | 41.04 | 5.19 | R |
2661 | 3454 | 4.828704 | GCATTTGCATGATACAACATTGC | 58.171 | 39.130 | 0.0 | 0.0 | 41.59 | 3.56 | R |
2686 | 3479 | 8.964476 | AGACATATGGAGAAAATTATGTTCGT | 57.036 | 30.769 | 7.8 | 0.0 | 0.00 | 3.85 | R |
2976 | 3854 | 0.319040 | CCTCTATGGACGCACGGATG | 60.319 | 60.000 | 0.0 | 0.0 | 38.35 | 3.51 | R |
3636 | 5913 | 0.740868 | AATGACGGATGGCAGACACG | 60.741 | 55.000 | 0.0 | 0.0 | 0.00 | 4.49 | R |
4341 | 6680 | 0.666913 | CCATGCAGCCATCAGTAAGC | 59.333 | 55.000 | 0.0 | 0.0 | 0.00 | 3.09 | R |
5572 | 7981 | 0.029834 | GCAATGCATGGGCGTTCTAG | 59.970 | 55.000 | 0.0 | 0.0 | 46.01 | 2.43 | R |
All possible primersListed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives. |
---|
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability |
---|---|---|---|---|---|---|---|---|---|
20 | 21 | 2.841442 | AACAAGAGTAGGAGCACCAC | 57.159 | 50.000 | 2.07 | 0.00 | 38.94 | 4.16 |
21 | 22 | 0.977395 | ACAAGAGTAGGAGCACCACC | 59.023 | 55.000 | 2.07 | 0.00 | 38.94 | 4.61 |
22 | 23 | 0.976641 | CAAGAGTAGGAGCACCACCA | 59.023 | 55.000 | 2.07 | 0.00 | 38.94 | 4.17 |
23 | 24 | 0.977395 | AAGAGTAGGAGCACCACCAC | 59.023 | 55.000 | 2.07 | 0.00 | 38.94 | 4.16 |
24 | 25 | 1.215647 | GAGTAGGAGCACCACCACG | 59.784 | 63.158 | 2.07 | 0.00 | 38.94 | 4.94 |
25 | 26 | 1.228769 | AGTAGGAGCACCACCACGA | 60.229 | 57.895 | 2.07 | 0.00 | 38.94 | 4.35 |
26 | 27 | 0.614979 | AGTAGGAGCACCACCACGAT | 60.615 | 55.000 | 2.07 | 0.00 | 38.94 | 3.73 |
27 | 28 | 0.179108 | GTAGGAGCACCACCACGATC | 60.179 | 60.000 | 2.07 | 0.00 | 38.94 | 3.69 |
28 | 29 | 0.324368 | TAGGAGCACCACCACGATCT | 60.324 | 55.000 | 2.07 | 0.00 | 38.94 | 2.75 |
29 | 30 | 1.448540 | GGAGCACCACCACGATCTG | 60.449 | 63.158 | 0.00 | 0.00 | 35.97 | 2.90 |
30 | 31 | 1.591703 | GAGCACCACCACGATCTGA | 59.408 | 57.895 | 0.00 | 0.00 | 0.00 | 3.27 |
31 | 32 | 0.037326 | GAGCACCACCACGATCTGAA | 60.037 | 55.000 | 0.00 | 0.00 | 0.00 | 3.02 |
32 | 33 | 0.396435 | AGCACCACCACGATCTGAAA | 59.604 | 50.000 | 0.00 | 0.00 | 0.00 | 2.69 |
33 | 34 | 0.517316 | GCACCACCACGATCTGAAAC | 59.483 | 55.000 | 0.00 | 0.00 | 0.00 | 2.78 |
34 | 35 | 1.156736 | CACCACCACGATCTGAAACC | 58.843 | 55.000 | 0.00 | 0.00 | 0.00 | 3.27 |
35 | 36 | 0.320421 | ACCACCACGATCTGAAACCG | 60.320 | 55.000 | 0.00 | 0.00 | 0.00 | 4.44 |
36 | 37 | 0.037697 | CCACCACGATCTGAAACCGA | 60.038 | 55.000 | 0.00 | 0.00 | 0.00 | 4.69 |
37 | 38 | 1.606994 | CCACCACGATCTGAAACCGAA | 60.607 | 52.381 | 0.00 | 0.00 | 0.00 | 4.30 |
38 | 39 | 1.459592 | CACCACGATCTGAAACCGAAC | 59.540 | 52.381 | 0.00 | 0.00 | 0.00 | 3.95 |
39 | 40 | 1.076332 | CCACGATCTGAAACCGAACC | 58.924 | 55.000 | 0.00 | 0.00 | 0.00 | 3.62 |
40 | 41 | 0.713883 | CACGATCTGAAACCGAACCG | 59.286 | 55.000 | 0.00 | 0.00 | 0.00 | 4.44 |
58 | 59 | 2.853731 | CGGAGGTAGAGCTGTTGTAG | 57.146 | 55.000 | 0.00 | 0.00 | 0.00 | 2.74 |
68 | 69 | 2.785868 | CTGTTGTAGCATGGAGGCC | 58.214 | 57.895 | 0.00 | 0.00 | 0.00 | 5.19 |
69 | 70 | 1.078497 | TGTTGTAGCATGGAGGCCG | 60.078 | 57.895 | 0.00 | 0.00 | 0.00 | 6.13 |
70 | 71 | 2.124736 | TTGTAGCATGGAGGCCGC | 60.125 | 61.111 | 0.00 | 0.00 | 0.00 | 6.53 |
71 | 72 | 3.697439 | TTGTAGCATGGAGGCCGCC | 62.697 | 63.158 | 20.28 | 20.28 | 0.00 | 6.13 |
72 | 73 | 4.175337 | GTAGCATGGAGGCCGCCA | 62.175 | 66.667 | 31.62 | 31.62 | 43.23 | 5.69 |
73 | 74 | 4.175337 | TAGCATGGAGGCCGCCAC | 62.175 | 66.667 | 32.15 | 19.21 | 41.56 | 5.01 |
75 | 76 | 4.175337 | GCATGGAGGCCGCCACTA | 62.175 | 66.667 | 32.15 | 8.72 | 41.56 | 2.74 |
76 | 77 | 2.203070 | CATGGAGGCCGCCACTAC | 60.203 | 66.667 | 32.15 | 0.75 | 41.56 | 2.73 |
77 | 78 | 3.480133 | ATGGAGGCCGCCACTACC | 61.480 | 66.667 | 32.15 | 10.50 | 41.56 | 3.18 |
78 | 79 | 4.715130 | TGGAGGCCGCCACTACCT | 62.715 | 66.667 | 26.11 | 0.00 | 36.19 | 3.08 |
79 | 80 | 4.162690 | GGAGGCCGCCACTACCTG | 62.163 | 72.222 | 22.24 | 0.00 | 32.67 | 4.00 |
80 | 81 | 4.840005 | GAGGCCGCCACTACCTGC | 62.840 | 72.222 | 13.15 | 0.00 | 32.67 | 4.85 |
125 | 126 | 3.310860 | ATCCCAGCGGTCGTTGTCC | 62.311 | 63.158 | 6.48 | 0.00 | 0.00 | 4.02 |
133 | 134 | 2.388232 | GGTCGTTGTCCGCCATCAC | 61.388 | 63.158 | 0.00 | 0.00 | 36.19 | 3.06 |
161 | 162 | 1.227973 | GACCAAGATGGGATCCGCC | 60.228 | 63.158 | 5.45 | 0.00 | 43.37 | 6.13 |
182 | 183 | 2.288091 | CGCATCGATCTTGATCCTCTGT | 60.288 | 50.000 | 0.00 | 0.00 | 0.00 | 3.41 |
197 | 198 | 1.270826 | CTCTGTTGTGCGAGGAGAAGA | 59.729 | 52.381 | 0.00 | 0.00 | 0.00 | 2.87 |
209 | 210 | 4.974438 | AGAAGACCACCCCCGCCA | 62.974 | 66.667 | 0.00 | 0.00 | 0.00 | 5.69 |
251 | 252 | 3.313524 | TCTTCTCCGGCAGCTGCA | 61.314 | 61.111 | 37.63 | 18.61 | 44.36 | 4.41 |
295 | 296 | 0.330604 | AGGAGCGGTGTAGTCCTGTA | 59.669 | 55.000 | 0.00 | 0.00 | 39.36 | 2.74 |
308 | 309 | 3.445008 | AGTCCTGTAGTGTGATGGATGT | 58.555 | 45.455 | 0.00 | 0.00 | 0.00 | 3.06 |
432 | 433 | 6.258230 | TGTGGATCTACTCATTTTGCTTTG | 57.742 | 37.500 | 10.82 | 0.00 | 0.00 | 2.77 |
501 | 502 | 4.651045 | GGAACCGAGGGAGTAATAGGTAAA | 59.349 | 45.833 | 0.00 | 0.00 | 0.00 | 2.01 |
519 | 520 | 3.634397 | AAATCTGACCGACACATCCAT | 57.366 | 42.857 | 0.00 | 0.00 | 0.00 | 3.41 |
532 | 533 | 5.409520 | CGACACATCCATATACATTTGAGGG | 59.590 | 44.000 | 0.00 | 0.00 | 0.00 | 4.30 |
543 | 544 | 1.681264 | CATTTGAGGGGCCGGATTAAC | 59.319 | 52.381 | 5.05 | 0.00 | 0.00 | 2.01 |
570 | 571 | 1.804372 | GCTGTGGCTGTAGATTCCTCG | 60.804 | 57.143 | 0.00 | 0.00 | 35.22 | 4.63 |
585 | 586 | 2.045045 | TCGCAAAGGAGCCATGGG | 60.045 | 61.111 | 15.13 | 0.00 | 0.00 | 4.00 |
600 | 601 | 2.125147 | GGGCATGCAGCTCGTACA | 60.125 | 61.111 | 21.36 | 0.00 | 44.79 | 2.90 |
603 | 604 | 1.645455 | GCATGCAGCTCGTACATGG | 59.355 | 57.895 | 14.21 | 1.55 | 41.17 | 3.66 |
645 | 646 | 3.005554 | CGGGTAAGAGACGTACAGAAGA | 58.994 | 50.000 | 0.00 | 0.00 | 0.00 | 2.87 |
687 | 688 | 1.078759 | GGTCTCTCACGCATTCCACG | 61.079 | 60.000 | 0.00 | 0.00 | 0.00 | 4.94 |
705 | 706 | 0.458025 | CGAGTGGAAACTAGGGACGC | 60.458 | 60.000 | 0.00 | 0.00 | 0.00 | 5.19 |
737 | 738 | 1.673665 | CCAGCAGGCTTTCGCTCTT | 60.674 | 57.895 | 0.00 | 0.00 | 35.96 | 2.85 |
774 | 775 | 0.955919 | GGAAACTTGGGAGGCAGACG | 60.956 | 60.000 | 0.00 | 0.00 | 0.00 | 4.18 |
778 | 779 | 0.036010 | ACTTGGGAGGCAGACGATTG | 60.036 | 55.000 | 0.00 | 0.00 | 0.00 | 2.67 |
785 | 786 | 1.003839 | GGCAGACGATTGACACCCA | 60.004 | 57.895 | 0.00 | 0.00 | 0.00 | 4.51 |
787 | 788 | 1.298859 | GCAGACGATTGACACCCACC | 61.299 | 60.000 | 0.00 | 0.00 | 0.00 | 4.61 |
848 | 849 | 5.069501 | AGTCGAAAATACGCTAGACCTTT | 57.930 | 39.130 | 0.00 | 0.00 | 0.00 | 3.11 |
849 | 850 | 5.476614 | AGTCGAAAATACGCTAGACCTTTT | 58.523 | 37.500 | 0.00 | 0.00 | 0.00 | 2.27 |
850 | 851 | 6.624423 | AGTCGAAAATACGCTAGACCTTTTA | 58.376 | 36.000 | 0.00 | 0.00 | 0.00 | 1.52 |
851 | 852 | 7.092716 | AGTCGAAAATACGCTAGACCTTTTAA | 58.907 | 34.615 | 0.00 | 0.00 | 0.00 | 1.52 |
852 | 853 | 7.599998 | AGTCGAAAATACGCTAGACCTTTTAAA | 59.400 | 33.333 | 0.00 | 0.00 | 0.00 | 1.52 |
897 | 898 | 2.793278 | AATTTTTCACAGACCCACGC | 57.207 | 45.000 | 0.00 | 0.00 | 0.00 | 5.34 |
898 | 899 | 0.958822 | ATTTTTCACAGACCCACGCC | 59.041 | 50.000 | 0.00 | 0.00 | 0.00 | 5.68 |
899 | 900 | 0.106918 | TTTTTCACAGACCCACGCCT | 60.107 | 50.000 | 0.00 | 0.00 | 0.00 | 5.52 |
900 | 901 | 0.106918 | TTTTCACAGACCCACGCCTT | 60.107 | 50.000 | 0.00 | 0.00 | 0.00 | 4.35 |
901 | 902 | 0.534203 | TTTCACAGACCCACGCCTTC | 60.534 | 55.000 | 0.00 | 0.00 | 0.00 | 3.46 |
902 | 903 | 1.407656 | TTCACAGACCCACGCCTTCT | 61.408 | 55.000 | 0.00 | 0.00 | 0.00 | 2.85 |
903 | 904 | 1.071471 | CACAGACCCACGCCTTCTT | 59.929 | 57.895 | 0.00 | 0.00 | 0.00 | 2.52 |
904 | 905 | 0.951040 | CACAGACCCACGCCTTCTTC | 60.951 | 60.000 | 0.00 | 0.00 | 0.00 | 2.87 |
905 | 906 | 1.738099 | CAGACCCACGCCTTCTTCG | 60.738 | 63.158 | 0.00 | 0.00 | 0.00 | 3.79 |
906 | 907 | 1.906824 | AGACCCACGCCTTCTTCGA | 60.907 | 57.895 | 0.00 | 0.00 | 0.00 | 3.71 |
907 | 908 | 1.737008 | GACCCACGCCTTCTTCGAC | 60.737 | 63.158 | 0.00 | 0.00 | 0.00 | 4.20 |
908 | 909 | 2.342279 | CCCACGCCTTCTTCGACA | 59.658 | 61.111 | 0.00 | 0.00 | 0.00 | 4.35 |
909 | 910 | 1.738099 | CCCACGCCTTCTTCGACAG | 60.738 | 63.158 | 0.00 | 0.00 | 0.00 | 3.51 |
910 | 911 | 2.383527 | CCACGCCTTCTTCGACAGC | 61.384 | 63.158 | 0.00 | 0.00 | 0.00 | 4.40 |
922 | 923 | 2.941891 | TCGACAGCGACAAAACAATC | 57.058 | 45.000 | 0.00 | 0.00 | 42.51 | 2.67 |
931 | 932 | 2.033577 | CGACAAAACAATCCGTTCGACA | 60.034 | 45.455 | 0.00 | 0.00 | 36.59 | 4.35 |
933 | 934 | 3.884169 | ACAAAACAATCCGTTCGACATG | 58.116 | 40.909 | 0.00 | 0.00 | 36.59 | 3.21 |
950 | 951 | 4.149922 | CGACATGTATTTATAGGCCACACG | 59.850 | 45.833 | 5.01 | 0.00 | 0.00 | 4.49 |
989 | 990 | 6.681777 | TCCAAAAGCAAAATTAAGCTCTCTC | 58.318 | 36.000 | 5.17 | 0.00 | 40.90 | 3.20 |
992 | 993 | 3.338249 | AGCAAAATTAAGCTCTCTCGCA | 58.662 | 40.909 | 0.00 | 0.00 | 36.00 | 5.10 |
1025 | 1030 | 1.206610 | GTCTTCCTCTCATGCTGCTGA | 59.793 | 52.381 | 0.00 | 1.50 | 0.00 | 4.26 |
1029 | 1034 | 0.249676 | CCTCTCATGCTGCTGACACT | 59.750 | 55.000 | 0.00 | 0.00 | 0.00 | 3.55 |
1121 | 1126 | 3.566742 | CCGCCACCCAAGGTAATATAAAC | 59.433 | 47.826 | 0.00 | 0.00 | 32.11 | 2.01 |
1126 | 1131 | 7.148306 | CGCCACCCAAGGTAATATAAACATATC | 60.148 | 40.741 | 0.00 | 0.00 | 32.11 | 1.63 |
1177 | 1184 | 2.159787 | GCACTACGCACACAATCTTCTG | 60.160 | 50.000 | 0.00 | 0.00 | 41.79 | 3.02 |
1199 | 1206 | 5.675970 | TGTCTTCGCTTACAATTCTTTTCG | 58.324 | 37.500 | 0.00 | 0.00 | 0.00 | 3.46 |
1222 | 1229 | 6.017687 | TCGATTCATTAGTCAATGGATGCTTG | 60.018 | 38.462 | 0.00 | 0.00 | 39.98 | 4.01 |
1224 | 1231 | 4.529897 | TCATTAGTCAATGGATGCTTGCT | 58.470 | 39.130 | 0.00 | 0.00 | 41.66 | 3.91 |
1227 | 1234 | 5.818136 | TTAGTCAATGGATGCTTGCTTAC | 57.182 | 39.130 | 0.00 | 0.00 | 0.00 | 2.34 |
1233 | 1240 | 7.886970 | AGTCAATGGATGCTTGCTTACATATAT | 59.113 | 33.333 | 6.63 | 0.00 | 0.00 | 0.86 |
1234 | 1241 | 9.166173 | GTCAATGGATGCTTGCTTACATATATA | 57.834 | 33.333 | 6.63 | 0.00 | 0.00 | 0.86 |
1235 | 1242 | 9.910267 | TCAATGGATGCTTGCTTACATATATAT | 57.090 | 29.630 | 6.63 | 0.00 | 0.00 | 0.86 |
1263 | 1272 | 3.641434 | ATATATGCATGGCAGAGGTCC | 57.359 | 47.619 | 10.16 | 0.00 | 43.65 | 4.46 |
1478 | 1487 | 0.820226 | CTCCATGAGGTCGCTCTTCA | 59.180 | 55.000 | 0.00 | 0.00 | 36.62 | 3.02 |
1602 | 1611 | 2.550855 | GCCCGCAAATGATAGAGGATGA | 60.551 | 50.000 | 0.00 | 0.00 | 0.00 | 2.92 |
1652 | 1661 | 5.500234 | AGTTATCAAGCTTGGACTAATGCA | 58.500 | 37.500 | 25.73 | 3.84 | 0.00 | 3.96 |
1674 | 1733 | 5.517770 | GCACTTTTCATATTGAAGGACATGC | 59.482 | 40.000 | 0.00 | 0.00 | 37.70 | 4.06 |
1790 | 1852 | 9.268255 | TGATTTTACACTTATTATTTTCACGCG | 57.732 | 29.630 | 3.53 | 3.53 | 0.00 | 6.01 |
1862 | 1925 | 4.021981 | CGACAATGCTCTATCCTGATGGTA | 60.022 | 45.833 | 0.00 | 0.00 | 34.23 | 3.25 |
1886 | 1949 | 3.117888 | AGTTTCTGTGGACTGGATTGTGT | 60.118 | 43.478 | 0.00 | 0.00 | 0.00 | 3.72 |
1921 | 1984 | 4.725556 | TGTCACAAATTAAGTCGACTGC | 57.274 | 40.909 | 20.85 | 2.25 | 0.00 | 4.40 |
1928 | 1991 | 9.974980 | TCACAAATTAAGTCGACTGCATATATA | 57.025 | 29.630 | 20.85 | 2.49 | 0.00 | 0.86 |
1932 | 1995 | 8.758633 | AATTAAGTCGACTGCATATATACCAC | 57.241 | 34.615 | 20.85 | 0.00 | 0.00 | 4.16 |
1933 | 1996 | 4.785511 | AGTCGACTGCATATATACCACC | 57.214 | 45.455 | 19.30 | 0.00 | 0.00 | 4.61 |
2007 | 2070 | 6.801539 | TTTACTGATCTCGCAGATGTTTTT | 57.198 | 33.333 | 0.00 | 0.00 | 34.53 | 1.94 |
2189 | 2255 | 2.254152 | AGTCTGCAATCACCCCTAGA | 57.746 | 50.000 | 0.00 | 0.00 | 0.00 | 2.43 |
2249 | 2316 | 0.320697 | GCGTGTAAGAGGGTGGAAGT | 59.679 | 55.000 | 0.00 | 0.00 | 0.00 | 3.01 |
2376 | 2443 | 8.719645 | AGGAGCTCAAAGATATTACAGAGTAT | 57.280 | 34.615 | 17.19 | 0.00 | 0.00 | 2.12 |
2438 | 2505 | 7.967908 | AGATGAAAACTTTTCACCTCTCTAGA | 58.032 | 34.615 | 17.33 | 0.00 | 0.00 | 2.43 |
2582 | 3375 | 7.444299 | TGCACACAATCATCTATCATTAGCTA | 58.556 | 34.615 | 0.00 | 0.00 | 0.00 | 3.32 |
2622 | 3415 | 3.127895 | TGTGTTTCTTTCCTTTGTGGACG | 59.872 | 43.478 | 0.00 | 0.00 | 46.14 | 4.79 |
2632 | 3425 | 2.075355 | TTTGTGGACGGGCTGGGATT | 62.075 | 55.000 | 0.00 | 0.00 | 0.00 | 3.01 |
2646 | 3439 | 4.455877 | GGCTGGGATTAGCACACATATAAC | 59.544 | 45.833 | 0.00 | 0.00 | 45.46 | 1.89 |
2755 | 3548 | 7.920682 | AGCTACCTTTTTCTGTTTAACAACATG | 59.079 | 33.333 | 0.00 | 0.00 | 42.21 | 3.21 |
2757 | 3550 | 6.402222 | ACCTTTTTCTGTTTAACAACATGCA | 58.598 | 32.000 | 0.00 | 0.00 | 42.21 | 3.96 |
2758 | 3551 | 7.047271 | ACCTTTTTCTGTTTAACAACATGCAT | 58.953 | 30.769 | 0.00 | 0.00 | 42.21 | 3.96 |
2759 | 3552 | 7.011295 | ACCTTTTTCTGTTTAACAACATGCATG | 59.989 | 33.333 | 25.09 | 25.09 | 42.21 | 4.06 |
2760 | 3553 | 7.224362 | CCTTTTTCTGTTTAACAACATGCATGA | 59.776 | 33.333 | 32.75 | 7.36 | 42.21 | 3.07 |
2976 | 3854 | 5.408356 | ACCACTTTAGATGACACGTATGAC | 58.592 | 41.667 | 0.00 | 0.00 | 0.00 | 3.06 |
2985 | 3863 | 1.917212 | CACGTATGACATCCGTGCG | 59.083 | 57.895 | 18.73 | 1.90 | 44.34 | 5.34 |
2986 | 3864 | 1.509463 | ACGTATGACATCCGTGCGT | 59.491 | 52.632 | 5.15 | 0.00 | 45.84 | 5.24 |
3033 | 3911 | 5.047802 | ACATGAAGCCATACAAAGGTTTGAG | 60.048 | 40.000 | 9.42 | 0.00 | 40.55 | 3.02 |
3063 | 3941 | 8.722342 | TTTTTCTTTTAAACTTCCATCGATCG | 57.278 | 30.769 | 9.36 | 9.36 | 0.00 | 3.69 |
3139 | 4018 | 5.207110 | ACACTACTAGCTATGCATCCAAG | 57.793 | 43.478 | 0.19 | 0.00 | 0.00 | 3.61 |
3241 | 5007 | 7.202526 | ACTTTCAAAGTCATTGTTGTACCATG | 58.797 | 34.615 | 0.00 | 0.00 | 37.02 | 3.66 |
3312 | 5200 | 5.856156 | ACAATTTCCACAATGCTCAAATCA | 58.144 | 33.333 | 0.00 | 0.00 | 0.00 | 2.57 |
3593 | 5870 | 7.466185 | GCGGTAACTACATATATGTTTTGTGCA | 60.466 | 37.037 | 22.90 | 3.07 | 41.97 | 4.57 |
3636 | 5913 | 1.871080 | CCTCGGTTAGTGATGATGGC | 58.129 | 55.000 | 0.00 | 0.00 | 0.00 | 4.40 |
3679 | 5956 | 9.941325 | ATTTCTGACCATTAGATAAGCATCTAG | 57.059 | 33.333 | 0.00 | 0.00 | 43.16 | 2.43 |
3714 | 5996 | 0.177604 | TTGTGGCCCTTTTGCAACAG | 59.822 | 50.000 | 5.59 | 5.59 | 45.50 | 3.16 |
3801 | 6083 | 3.561960 | CCCTCACCTCATCAAAACATCCA | 60.562 | 47.826 | 0.00 | 0.00 | 0.00 | 3.41 |
3877 | 6159 | 5.360714 | TGAAAACAAGAGTGGCTTCTTTCAT | 59.639 | 36.000 | 0.00 | 0.00 | 38.87 | 2.57 |
3942 | 6276 | 5.375354 | TGTATCTTCCACAATGGGGGAATAT | 59.625 | 40.000 | 3.63 | 5.72 | 42.02 | 1.28 |
4005 | 6339 | 8.691797 | TCCTTTTGTTTGCTACTCTTTTGTATT | 58.308 | 29.630 | 0.00 | 0.00 | 0.00 | 1.89 |
4007 | 6341 | 9.301153 | CTTTTGTTTGCTACTCTTTTGTATTGT | 57.699 | 29.630 | 0.00 | 0.00 | 0.00 | 2.71 |
4057 | 6391 | 5.890334 | ACACTTTATTGTGACACCTTGTTG | 58.110 | 37.500 | 2.45 | 0.00 | 40.12 | 3.33 |
4233 | 6569 | 8.638873 | CAACACCTATACTATCCATGACTACAA | 58.361 | 37.037 | 0.00 | 0.00 | 0.00 | 2.41 |
4419 | 6758 | 5.155161 | AGATGATGGGGCAGTACATAACTA | 58.845 | 41.667 | 0.00 | 0.00 | 35.76 | 2.24 |
4486 | 6826 | 1.202879 | TCCAAGAAGCGGAATGGTGTT | 60.203 | 47.619 | 0.00 | 0.00 | 34.50 | 3.32 |
4489 | 6829 | 3.074412 | CAAGAAGCGGAATGGTGTTACT | 58.926 | 45.455 | 0.00 | 0.00 | 0.00 | 2.24 |
4704 | 7086 | 7.567571 | CAGCATTTGAGGTATGTAGTATTTCG | 58.432 | 38.462 | 0.00 | 0.00 | 0.00 | 3.46 |
4705 | 7087 | 7.438160 | CAGCATTTGAGGTATGTAGTATTTCGA | 59.562 | 37.037 | 0.00 | 0.00 | 0.00 | 3.71 |
4706 | 7088 | 8.150945 | AGCATTTGAGGTATGTAGTATTTCGAT | 58.849 | 33.333 | 0.00 | 0.00 | 0.00 | 3.59 |
4707 | 7089 | 9.419297 | GCATTTGAGGTATGTAGTATTTCGATA | 57.581 | 33.333 | 0.00 | 0.00 | 0.00 | 2.92 |
4718 | 7100 | 7.614908 | TGTAGTATTTCGATAAACATTCGTGC | 58.385 | 34.615 | 0.00 | 0.00 | 37.82 | 5.34 |
4719 | 7101 | 6.656314 | AGTATTTCGATAAACATTCGTGCA | 57.344 | 33.333 | 0.00 | 0.00 | 37.82 | 4.57 |
4720 | 7102 | 7.246674 | AGTATTTCGATAAACATTCGTGCAT | 57.753 | 32.000 | 0.00 | 0.00 | 37.82 | 3.96 |
4721 | 7103 | 8.360325 | AGTATTTCGATAAACATTCGTGCATA | 57.640 | 30.769 | 0.00 | 0.00 | 37.82 | 3.14 |
4722 | 7104 | 8.273557 | AGTATTTCGATAAACATTCGTGCATAC | 58.726 | 33.333 | 0.00 | 0.00 | 37.82 | 2.39 |
4724 | 7106 | 5.383984 | TCGATAAACATTCGTGCATACAC | 57.616 | 39.130 | 0.00 | 0.00 | 43.76 | 2.90 |
4738 | 7120 | 5.920312 | GTGCATACACATATCACATACTGC | 58.080 | 41.667 | 0.00 | 0.00 | 46.61 | 4.40 |
4739 | 7121 | 5.466393 | GTGCATACACATATCACATACTGCA | 59.534 | 40.000 | 0.00 | 0.00 | 46.61 | 4.41 |
4740 | 7122 | 6.148315 | GTGCATACACATATCACATACTGCAT | 59.852 | 38.462 | 0.00 | 0.00 | 46.61 | 3.96 |
4749 | 7131 | 9.740239 | ACATATCACATACTGCATTTGAAAATC | 57.260 | 29.630 | 0.00 | 0.00 | 27.43 | 2.17 |
4789 | 7171 | 7.756272 | TGCACATGTATCATGAAATCAAAGTTC | 59.244 | 33.333 | 15.25 | 0.00 | 0.00 | 3.01 |
4815 | 7197 | 8.167985 | CCACTGGCATTTAAACGAATAAAATTG | 58.832 | 33.333 | 0.00 | 0.00 | 0.00 | 2.32 |
4860 | 7242 | 9.988350 | GTGATACTTCCATATTGTTGTACAAAG | 57.012 | 33.333 | 10.51 | 3.27 | 41.96 | 2.77 |
4903 | 7285 | 2.481289 | TGTGTCCATGCGGTTATTCA | 57.519 | 45.000 | 0.00 | 0.00 | 0.00 | 2.57 |
5107 | 7491 | 0.963856 | ATGAGTACGGCGTCACAGGA | 60.964 | 55.000 | 19.21 | 0.00 | 0.00 | 3.86 |
5172 | 7556 | 3.389329 | TGGAGAACTCTGAACAAAGCTCT | 59.611 | 43.478 | 1.86 | 0.00 | 0.00 | 4.09 |
5197 | 7581 | 0.333993 | AAGACCATGCATTGCTCCCT | 59.666 | 50.000 | 10.49 | 0.00 | 0.00 | 4.20 |
5526 | 7935 | 8.264347 | TGCTCAATGTTTCTAACCACATATAGA | 58.736 | 33.333 | 0.00 | 0.00 | 33.11 | 1.98 |
5572 | 7981 | 2.571206 | GCGCACAACAGCTTTAACTAC | 58.429 | 47.619 | 0.30 | 0.00 | 0.00 | 2.73 |
5583 | 7992 | 3.512724 | AGCTTTAACTACTAGAACGCCCA | 59.487 | 43.478 | 0.00 | 0.00 | 0.00 | 5.36 |
5603 | 8012 | 0.035915 | TGCATTGCTACGGGCTACAA | 60.036 | 50.000 | 10.49 | 0.00 | 42.39 | 2.41 |
5604 | 8013 | 1.308998 | GCATTGCTACGGGCTACAAT | 58.691 | 50.000 | 0.16 | 0.00 | 42.39 | 2.71 |
5605 | 8014 | 2.158885 | TGCATTGCTACGGGCTACAATA | 60.159 | 45.455 | 10.49 | 0.00 | 42.39 | 1.90 |
5606 | 8015 | 3.074412 | GCATTGCTACGGGCTACAATAT | 58.926 | 45.455 | 0.16 | 0.00 | 42.39 | 1.28 |
5704 | 8114 | 9.593134 | AATGCACTCTTTGTTATTTTTGTTGTA | 57.407 | 25.926 | 0.00 | 0.00 | 0.00 | 2.41 |
5799 | 8217 | 9.630098 | TCAAGAATGATTGCTTTCATACTTTTC | 57.370 | 29.630 | 2.94 | 0.00 | 35.29 | 2.29 |
5818 | 8236 | 3.558931 | TCTGGAACTGTGTGTTGACAT | 57.441 | 42.857 | 0.00 | 0.00 | 39.30 | 3.06 |
5888 | 8318 | 6.759356 | TCTGAGAGTTTGTACAATTCGTGAAA | 59.241 | 34.615 | 9.56 | 0.00 | 0.00 | 2.69 |
5916 | 8360 | 5.092781 | GCGGGTAACATGTAATTGTGAAAG | 58.907 | 41.667 | 0.00 | 0.00 | 39.74 | 2.62 |
5917 | 8361 | 5.106475 | GCGGGTAACATGTAATTGTGAAAGA | 60.106 | 40.000 | 0.00 | 0.00 | 39.74 | 2.52 |
5918 | 8362 | 6.568844 | GCGGGTAACATGTAATTGTGAAAGAA | 60.569 | 38.462 | 0.00 | 0.00 | 39.74 | 2.52 |
5982 | 8426 | 8.863049 | CATAACTGGTATGTTGATTTCTTTTGC | 58.137 | 33.333 | 4.52 | 0.00 | 35.72 | 3.68 |
5983 | 8427 | 6.655078 | ACTGGTATGTTGATTTCTTTTGCT | 57.345 | 33.333 | 0.00 | 0.00 | 0.00 | 3.91 |
6154 | 8601 | 6.146673 | GCTTACGACAAACCTACAAAGTATGT | 59.853 | 38.462 | 0.00 | 0.00 | 46.36 | 2.29 |
6281 | 8728 | 8.025445 | AGCTTGACTTATGCTTTTGAACTAATG | 58.975 | 33.333 | 0.00 | 0.00 | 36.47 | 1.90 |
6307 | 8754 | 5.104527 | TCACTTTACCATCCTCCATAACCTG | 60.105 | 44.000 | 0.00 | 0.00 | 0.00 | 4.00 |
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability |
---|---|---|---|---|---|---|---|---|---|
0 | 1 | 2.565834 | GGTGGTGCTCCTACTCTTGTTA | 59.434 | 50.000 | 6.34 | 0.00 | 34.23 | 2.41 |
1 | 2 | 1.348036 | GGTGGTGCTCCTACTCTTGTT | 59.652 | 52.381 | 6.34 | 0.00 | 34.23 | 2.83 |
2 | 3 | 0.977395 | GGTGGTGCTCCTACTCTTGT | 59.023 | 55.000 | 6.34 | 0.00 | 34.23 | 3.16 |
3 | 4 | 0.976641 | TGGTGGTGCTCCTACTCTTG | 59.023 | 55.000 | 6.34 | 0.00 | 34.23 | 3.02 |
4 | 5 | 0.977395 | GTGGTGGTGCTCCTACTCTT | 59.023 | 55.000 | 6.34 | 0.00 | 34.23 | 2.85 |
5 | 6 | 1.251527 | CGTGGTGGTGCTCCTACTCT | 61.252 | 60.000 | 6.34 | 0.00 | 34.23 | 3.24 |
6 | 7 | 1.215647 | CGTGGTGGTGCTCCTACTC | 59.784 | 63.158 | 6.34 | 0.00 | 34.23 | 2.59 |
7 | 8 | 0.614979 | ATCGTGGTGGTGCTCCTACT | 60.615 | 55.000 | 6.34 | 0.00 | 34.23 | 2.57 |
8 | 9 | 0.179108 | GATCGTGGTGGTGCTCCTAC | 60.179 | 60.000 | 6.34 | 2.93 | 34.23 | 3.18 |
9 | 10 | 0.324368 | AGATCGTGGTGGTGCTCCTA | 60.324 | 55.000 | 6.34 | 0.00 | 34.23 | 2.94 |
10 | 11 | 1.610673 | AGATCGTGGTGGTGCTCCT | 60.611 | 57.895 | 6.34 | 0.00 | 34.23 | 3.69 |
11 | 12 | 1.448540 | CAGATCGTGGTGGTGCTCC | 60.449 | 63.158 | 0.00 | 0.00 | 0.00 | 4.70 |
12 | 13 | 0.037326 | TTCAGATCGTGGTGGTGCTC | 60.037 | 55.000 | 0.00 | 0.00 | 0.00 | 4.26 |
13 | 14 | 0.396435 | TTTCAGATCGTGGTGGTGCT | 59.604 | 50.000 | 0.00 | 0.00 | 0.00 | 4.40 |
14 | 15 | 0.517316 | GTTTCAGATCGTGGTGGTGC | 59.483 | 55.000 | 0.00 | 0.00 | 0.00 | 5.01 |
15 | 16 | 1.156736 | GGTTTCAGATCGTGGTGGTG | 58.843 | 55.000 | 0.00 | 0.00 | 0.00 | 4.17 |
16 | 17 | 0.320421 | CGGTTTCAGATCGTGGTGGT | 60.320 | 55.000 | 0.00 | 0.00 | 0.00 | 4.16 |
17 | 18 | 0.037697 | TCGGTTTCAGATCGTGGTGG | 60.038 | 55.000 | 0.00 | 0.00 | 0.00 | 4.61 |
18 | 19 | 1.459592 | GTTCGGTTTCAGATCGTGGTG | 59.540 | 52.381 | 0.00 | 0.00 | 0.00 | 4.17 |
19 | 20 | 1.607251 | GGTTCGGTTTCAGATCGTGGT | 60.607 | 52.381 | 0.00 | 0.00 | 0.00 | 4.16 |
20 | 21 | 1.076332 | GGTTCGGTTTCAGATCGTGG | 58.924 | 55.000 | 0.00 | 0.00 | 0.00 | 4.94 |
21 | 22 | 0.713883 | CGGTTCGGTTTCAGATCGTG | 59.286 | 55.000 | 0.00 | 0.00 | 0.00 | 4.35 |
22 | 23 | 0.389426 | CCGGTTCGGTTTCAGATCGT | 60.389 | 55.000 | 0.00 | 0.00 | 42.73 | 3.73 |
23 | 24 | 2.369870 | CCGGTTCGGTTTCAGATCG | 58.630 | 57.895 | 0.00 | 0.00 | 42.73 | 3.69 |
34 | 35 | 1.313812 | ACAGCTCTACCTCCGGTTCG | 61.314 | 60.000 | 0.00 | 0.00 | 37.09 | 3.95 |
35 | 36 | 0.896226 | AACAGCTCTACCTCCGGTTC | 59.104 | 55.000 | 0.00 | 0.00 | 37.09 | 3.62 |
36 | 37 | 0.608640 | CAACAGCTCTACCTCCGGTT | 59.391 | 55.000 | 0.00 | 0.00 | 37.09 | 4.44 |
37 | 38 | 0.542232 | ACAACAGCTCTACCTCCGGT | 60.542 | 55.000 | 0.00 | 0.00 | 40.16 | 5.28 |
38 | 39 | 1.405821 | CTACAACAGCTCTACCTCCGG | 59.594 | 57.143 | 0.00 | 0.00 | 0.00 | 5.14 |
39 | 40 | 2.853731 | CTACAACAGCTCTACCTCCG | 57.146 | 55.000 | 0.00 | 0.00 | 0.00 | 4.63 |
50 | 51 | 1.091771 | CGGCCTCCATGCTACAACAG | 61.092 | 60.000 | 0.00 | 0.00 | 0.00 | 3.16 |
51 | 52 | 1.078497 | CGGCCTCCATGCTACAACA | 60.078 | 57.895 | 0.00 | 0.00 | 0.00 | 3.33 |
52 | 53 | 2.472909 | GCGGCCTCCATGCTACAAC | 61.473 | 63.158 | 0.00 | 0.00 | 0.00 | 3.32 |
53 | 54 | 2.124736 | GCGGCCTCCATGCTACAA | 60.125 | 61.111 | 0.00 | 0.00 | 0.00 | 2.41 |
54 | 55 | 4.175337 | GGCGGCCTCCATGCTACA | 62.175 | 66.667 | 12.87 | 0.00 | 0.00 | 2.74 |
55 | 56 | 4.175337 | TGGCGGCCTCCATGCTAC | 62.175 | 66.667 | 21.46 | 0.00 | 0.00 | 3.58 |
56 | 57 | 4.175337 | GTGGCGGCCTCCATGCTA | 62.175 | 66.667 | 19.50 | 0.00 | 38.57 | 3.49 |
58 | 59 | 4.175337 | TAGTGGCGGCCTCCATGC | 62.175 | 66.667 | 19.50 | 5.94 | 38.57 | 4.06 |
59 | 60 | 2.203070 | GTAGTGGCGGCCTCCATG | 60.203 | 66.667 | 19.50 | 0.00 | 38.57 | 3.66 |
60 | 61 | 3.480133 | GGTAGTGGCGGCCTCCAT | 61.480 | 66.667 | 19.50 | 9.68 | 38.57 | 3.41 |
61 | 62 | 4.715130 | AGGTAGTGGCGGCCTCCA | 62.715 | 66.667 | 21.46 | 11.40 | 0.00 | 3.86 |
62 | 63 | 4.162690 | CAGGTAGTGGCGGCCTCC | 62.163 | 72.222 | 21.46 | 16.09 | 0.00 | 4.30 |
63 | 64 | 4.840005 | GCAGGTAGTGGCGGCCTC | 62.840 | 72.222 | 21.46 | 17.13 | 0.00 | 4.70 |
108 | 109 | 3.998672 | GGACAACGACCGCTGGGA | 61.999 | 66.667 | 0.00 | 0.00 | 36.97 | 4.37 |
133 | 134 | 0.179089 | CATCTTGGTCTCCTCGGCAG | 60.179 | 60.000 | 0.00 | 0.00 | 0.00 | 4.85 |
161 | 162 | 2.288091 | ACAGAGGATCAAGATCGATGCG | 60.288 | 50.000 | 0.54 | 0.00 | 38.64 | 4.73 |
182 | 183 | 0.033504 | GTGGTCTTCTCCTCGCACAA | 59.966 | 55.000 | 0.00 | 0.00 | 0.00 | 3.33 |
236 | 237 | 1.968017 | CTTTGCAGCTGCCGGAGAA | 60.968 | 57.895 | 34.64 | 19.58 | 41.18 | 2.87 |
245 | 246 | 1.079266 | CGCTCTCCTCTTTGCAGCT | 60.079 | 57.895 | 0.00 | 0.00 | 0.00 | 4.24 |
251 | 252 | 4.459089 | GCCGCCGCTCTCCTCTTT | 62.459 | 66.667 | 0.00 | 0.00 | 0.00 | 2.52 |
285 | 286 | 4.402793 | ACATCCATCACACTACAGGACTAC | 59.597 | 45.833 | 0.00 | 0.00 | 0.00 | 2.73 |
295 | 296 | 7.069986 | ACTACCTATTCTACATCCATCACACT | 58.930 | 38.462 | 0.00 | 0.00 | 0.00 | 3.55 |
406 | 407 | 7.472334 | AAGCAAAATGAGTAGATCCACATTT | 57.528 | 32.000 | 0.00 | 0.00 | 42.25 | 2.32 |
416 | 417 | 8.935844 | TGACTACATACAAAGCAAAATGAGTAG | 58.064 | 33.333 | 0.00 | 0.00 | 33.40 | 2.57 |
417 | 418 | 8.840833 | TGACTACATACAAAGCAAAATGAGTA | 57.159 | 30.769 | 0.00 | 0.00 | 0.00 | 2.59 |
465 | 466 | 7.681168 | ACTCCCTCGGTTCCCATATAATATTTA | 59.319 | 37.037 | 0.00 | 0.00 | 0.00 | 1.40 |
473 | 474 | 3.339713 | TTACTCCCTCGGTTCCCATAT | 57.660 | 47.619 | 0.00 | 0.00 | 0.00 | 1.78 |
474 | 475 | 2.852714 | TTACTCCCTCGGTTCCCATA | 57.147 | 50.000 | 0.00 | 0.00 | 0.00 | 2.74 |
475 | 476 | 2.191981 | ATTACTCCCTCGGTTCCCAT | 57.808 | 50.000 | 0.00 | 0.00 | 0.00 | 4.00 |
483 | 484 | 6.294620 | GGTCAGATTTACCTATTACTCCCTCG | 60.295 | 46.154 | 0.00 | 0.00 | 33.97 | 4.63 |
501 | 502 | 4.832823 | TGTATATGGATGTGTCGGTCAGAT | 59.167 | 41.667 | 0.00 | 0.00 | 32.56 | 2.90 |
519 | 520 | 1.809133 | TCCGGCCCCTCAAATGTATA | 58.191 | 50.000 | 0.00 | 0.00 | 0.00 | 1.47 |
532 | 533 | 2.290641 | CAGCACATTAGTTAATCCGGCC | 59.709 | 50.000 | 0.00 | 0.00 | 0.00 | 6.13 |
543 | 544 | 3.251479 | TCTACAGCCACAGCACATTAG | 57.749 | 47.619 | 0.00 | 0.00 | 43.56 | 1.73 |
581 | 582 | 1.524621 | GTACGAGCTGCATGCCCAT | 60.525 | 57.895 | 16.68 | 0.00 | 44.23 | 4.00 |
582 | 583 | 2.125147 | GTACGAGCTGCATGCCCA | 60.125 | 61.111 | 16.68 | 0.00 | 44.23 | 5.36 |
585 | 586 | 1.645455 | CCATGTACGAGCTGCATGC | 59.355 | 57.895 | 11.82 | 11.82 | 40.66 | 4.06 |
600 | 601 | 0.549950 | CTGCTCCATCTTGTCCCCAT | 59.450 | 55.000 | 0.00 | 0.00 | 0.00 | 4.00 |
603 | 604 | 0.615331 | TCACTGCTCCATCTTGTCCC | 59.385 | 55.000 | 0.00 | 0.00 | 0.00 | 4.46 |
667 | 668 | 0.741221 | GTGGAATGCGTGAGAGACCC | 60.741 | 60.000 | 0.00 | 0.00 | 0.00 | 4.46 |
687 | 688 | 0.606604 | TGCGTCCCTAGTTTCCACTC | 59.393 | 55.000 | 0.00 | 0.00 | 34.06 | 3.51 |
705 | 706 | 1.373497 | GCTGGGTGTCAGTCGTCTG | 60.373 | 63.158 | 3.03 | 3.03 | 45.08 | 3.51 |
759 | 760 | 0.036010 | CAATCGTCTGCCTCCCAAGT | 60.036 | 55.000 | 0.00 | 0.00 | 0.00 | 3.16 |
774 | 775 | 0.251341 | AAGCCTGGTGGGTGTCAATC | 60.251 | 55.000 | 0.00 | 0.00 | 44.35 | 2.67 |
778 | 779 | 1.966451 | CGAAAGCCTGGTGGGTGTC | 60.966 | 63.158 | 0.00 | 0.00 | 44.35 | 3.67 |
820 | 821 | 2.523015 | AGCGTATTTTCGACTACACGG | 58.477 | 47.619 | 9.85 | 0.00 | 0.00 | 4.94 |
875 | 876 | 4.321675 | GGCGTGGGTCTGTGAAAAATTAAT | 60.322 | 41.667 | 0.00 | 0.00 | 0.00 | 1.40 |
903 | 904 | 1.529438 | GGATTGTTTTGTCGCTGTCGA | 59.471 | 47.619 | 0.00 | 0.00 | 43.28 | 4.20 |
904 | 905 | 1.721489 | CGGATTGTTTTGTCGCTGTCG | 60.721 | 52.381 | 0.00 | 0.00 | 0.00 | 4.35 |
905 | 906 | 1.263217 | ACGGATTGTTTTGTCGCTGTC | 59.737 | 47.619 | 0.00 | 0.00 | 0.00 | 3.51 |
906 | 907 | 1.305201 | ACGGATTGTTTTGTCGCTGT | 58.695 | 45.000 | 0.00 | 0.00 | 0.00 | 4.40 |
907 | 908 | 2.307049 | GAACGGATTGTTTTGTCGCTG | 58.693 | 47.619 | 0.00 | 0.00 | 42.09 | 5.18 |
908 | 909 | 1.070175 | CGAACGGATTGTTTTGTCGCT | 60.070 | 47.619 | 0.00 | 0.00 | 42.09 | 4.93 |
909 | 910 | 1.070443 | TCGAACGGATTGTTTTGTCGC | 60.070 | 47.619 | 0.00 | 0.00 | 42.09 | 5.19 |
910 | 911 | 2.033577 | TGTCGAACGGATTGTTTTGTCG | 60.034 | 45.455 | 0.00 | 0.00 | 42.09 | 4.35 |
911 | 912 | 3.595709 | TGTCGAACGGATTGTTTTGTC | 57.404 | 42.857 | 0.00 | 0.00 | 42.09 | 3.18 |
914 | 915 | 5.873179 | ATACATGTCGAACGGATTGTTTT | 57.127 | 34.783 | 0.00 | 0.00 | 42.09 | 2.43 |
922 | 923 | 4.387862 | GGCCTATAAATACATGTCGAACGG | 59.612 | 45.833 | 0.00 | 0.00 | 0.00 | 4.44 |
931 | 932 | 3.813166 | GCACGTGTGGCCTATAAATACAT | 59.187 | 43.478 | 18.38 | 0.00 | 0.00 | 2.29 |
933 | 934 | 3.199677 | TGCACGTGTGGCCTATAAATAC | 58.800 | 45.455 | 18.38 | 0.00 | 0.00 | 1.89 |
950 | 951 | 1.538047 | TTGGAAGCTCCTGAATGCAC | 58.462 | 50.000 | 0.00 | 0.00 | 37.46 | 4.57 |
973 | 974 | 4.154918 | AGGTTGCGAGAGAGCTTAATTTTG | 59.845 | 41.667 | 0.00 | 0.00 | 38.13 | 2.44 |
992 | 993 | 0.250513 | GGAAGACGCCATGAGAGGTT | 59.749 | 55.000 | 0.00 | 0.00 | 0.00 | 3.50 |
1040 | 1045 | 0.809241 | CTCAAAGCCTAGCTGCTCCG | 60.809 | 60.000 | 4.91 | 0.00 | 41.80 | 4.63 |
1065 | 1070 | 3.696051 | CGATGAAAAAGTCACCCCATGAT | 59.304 | 43.478 | 0.00 | 0.00 | 39.72 | 2.45 |
1101 | 1106 | 7.888546 | AGATATGTTTATATTACCTTGGGTGGC | 59.111 | 37.037 | 0.00 | 0.00 | 31.70 | 5.01 |
1121 | 1126 | 9.535878 | GAGAAGTTCTAAACCCAACTAGATATG | 57.464 | 37.037 | 5.09 | 0.00 | 32.36 | 1.78 |
1126 | 1131 | 9.372369 | CTTATGAGAAGTTCTAAACCCAACTAG | 57.628 | 37.037 | 5.09 | 0.00 | 32.36 | 2.57 |
1167 | 1174 | 4.883083 | TGTAAGCGAAGACAGAAGATTGT | 58.117 | 39.130 | 0.00 | 0.00 | 0.00 | 2.71 |
1177 | 1184 | 5.912528 | TCGAAAAGAATTGTAAGCGAAGAC | 58.087 | 37.500 | 0.00 | 0.00 | 0.00 | 3.01 |
1199 | 1206 | 5.919141 | GCAAGCATCCATTGACTAATGAATC | 59.081 | 40.000 | 1.80 | 0.00 | 45.21 | 2.52 |
1234 | 1241 | 9.955102 | CCTCTGCCATGCATATATATATGTAAT | 57.045 | 33.333 | 26.27 | 19.37 | 41.63 | 1.89 |
1235 | 1242 | 8.937835 | ACCTCTGCCATGCATATATATATGTAA | 58.062 | 33.333 | 26.27 | 18.32 | 41.63 | 2.41 |
1236 | 1243 | 8.496534 | ACCTCTGCCATGCATATATATATGTA | 57.503 | 34.615 | 26.27 | 23.84 | 41.63 | 2.29 |
1237 | 1244 | 7.384524 | ACCTCTGCCATGCATATATATATGT | 57.615 | 36.000 | 26.27 | 11.02 | 41.63 | 2.29 |
1238 | 1245 | 6.877855 | GGACCTCTGCCATGCATATATATATG | 59.122 | 42.308 | 23.19 | 23.19 | 42.30 | 1.78 |
1239 | 1246 | 6.295518 | CGGACCTCTGCCATGCATATATATAT | 60.296 | 42.308 | 0.00 | 0.00 | 38.13 | 0.86 |
1240 | 1247 | 5.011023 | CGGACCTCTGCCATGCATATATATA | 59.989 | 44.000 | 0.00 | 0.00 | 38.13 | 0.86 |
1250 | 1259 | 1.617018 | TTCCTCGGACCTCTGCCATG | 61.617 | 60.000 | 0.00 | 0.00 | 0.00 | 3.66 |
1263 | 1272 | 1.572085 | GCGCCATCATCCATTCCTCG | 61.572 | 60.000 | 0.00 | 0.00 | 0.00 | 4.63 |
1340 | 1349 | 0.240945 | CACCAAGAACATTCGTGCCC | 59.759 | 55.000 | 2.41 | 0.00 | 35.72 | 5.36 |
1344 | 1353 | 4.000988 | GTGTATCCACCAAGAACATTCGT | 58.999 | 43.478 | 0.00 | 0.00 | 35.44 | 3.85 |
1478 | 1487 | 6.120220 | CCATTCTCCCTAAGTAAACGGAATT | 58.880 | 40.000 | 0.00 | 0.00 | 0.00 | 2.17 |
1616 | 1625 | 6.037098 | AGCTTGATAACTCAACTAACTAGCG | 58.963 | 40.000 | 0.00 | 0.00 | 36.46 | 4.26 |
1652 | 1661 | 5.716228 | TGGCATGTCCTTCAATATGAAAAGT | 59.284 | 36.000 | 0.00 | 0.00 | 35.73 | 2.66 |
1674 | 1733 | 8.335532 | TGGAACTCTATAAGTGTCAAAAATGG | 57.664 | 34.615 | 0.00 | 0.00 | 38.58 | 3.16 |
1767 | 1829 | 9.105206 | GAACGCGTGAAAATAATAAGTGTAAAA | 57.895 | 29.630 | 14.98 | 0.00 | 0.00 | 1.52 |
1862 | 1925 | 4.339247 | CACAATCCAGTCCACAGAAACTTT | 59.661 | 41.667 | 0.00 | 0.00 | 0.00 | 2.66 |
1886 | 1949 | 2.929641 | TGTGACATTGCTTCAGGAACA | 58.070 | 42.857 | 0.00 | 0.00 | 0.00 | 3.18 |
2007 | 2070 | 6.159575 | TCCCATCTTCACCCTTGTATTTATCA | 59.840 | 38.462 | 0.00 | 0.00 | 0.00 | 2.15 |
2189 | 2255 | 0.168128 | GGCGCGTTTGACTTGCTTAT | 59.832 | 50.000 | 8.43 | 0.00 | 0.00 | 1.73 |
2459 | 2713 | 9.865321 | ATTTGATTTTCTGAATGGACACATAAG | 57.135 | 29.630 | 0.00 | 0.00 | 35.94 | 1.73 |
2542 | 3335 | 4.905429 | TGTGTGCATACTACCACTGAAAT | 58.095 | 39.130 | 15.05 | 0.00 | 33.26 | 2.17 |
2547 | 3340 | 4.551702 | TGATTGTGTGCATACTACCACT | 57.448 | 40.909 | 15.05 | 0.00 | 33.26 | 4.00 |
2622 | 3415 | 0.106519 | ATGTGTGCTAATCCCAGCCC | 60.107 | 55.000 | 0.00 | 0.00 | 41.04 | 5.19 |
2632 | 3425 | 6.263617 | TCCTATGTGTCGTTATATGTGTGCTA | 59.736 | 38.462 | 0.00 | 0.00 | 0.00 | 3.49 |
2661 | 3454 | 4.828704 | GCATTTGCATGATACAACATTGC | 58.171 | 39.130 | 0.00 | 0.00 | 41.59 | 3.56 |
2686 | 3479 | 8.964476 | AGACATATGGAGAAAATTATGTTCGT | 57.036 | 30.769 | 7.80 | 0.00 | 0.00 | 3.85 |
2687 | 3480 | 9.045223 | TGAGACATATGGAGAAAATTATGTTCG | 57.955 | 33.333 | 7.80 | 0.00 | 0.00 | 3.95 |
2976 | 3854 | 0.319040 | CCTCTATGGACGCACGGATG | 60.319 | 60.000 | 0.00 | 0.00 | 38.35 | 3.51 |
2985 | 3863 | 2.910688 | TTCGGCATTCCTCTATGGAC | 57.089 | 50.000 | 0.00 | 0.00 | 46.14 | 4.02 |
2986 | 3864 | 2.485479 | GCTTTCGGCATTCCTCTATGGA | 60.485 | 50.000 | 0.00 | 0.00 | 41.29 | 3.41 |
3000 | 3878 | 1.737838 | TGGCTTCATGTAGCTTTCGG | 58.262 | 50.000 | 21.72 | 0.00 | 40.99 | 4.30 |
3033 | 3911 | 8.902735 | CGATGGAAGTTTAAAAGAAAAAGCTAC | 58.097 | 33.333 | 0.00 | 0.00 | 0.00 | 3.58 |
3063 | 3941 | 3.084039 | TGGAACTCTGCAATGGTTGATC | 58.916 | 45.455 | 3.82 | 0.00 | 0.00 | 2.92 |
3241 | 5007 | 3.187842 | GGGAAACCGAACAACTACATGTC | 59.812 | 47.826 | 0.00 | 0.00 | 43.64 | 3.06 |
3312 | 5200 | 8.600625 | CACGCATGTGTAAGTTTATACAGTAAT | 58.399 | 33.333 | 12.39 | 0.00 | 41.34 | 1.89 |
3617 | 5894 | 1.869754 | CGCCATCATCACTAACCGAGG | 60.870 | 57.143 | 0.00 | 0.00 | 0.00 | 4.63 |
3636 | 5913 | 0.740868 | AATGACGGATGGCAGACACG | 60.741 | 55.000 | 0.00 | 0.00 | 0.00 | 4.49 |
3679 | 5956 | 1.732259 | CACAACTTACCTCATGGTCGC | 59.268 | 52.381 | 0.00 | 0.00 | 44.78 | 5.19 |
3714 | 5996 | 6.098409 | TGAATTGGAGTAGAGAAGTGGGATAC | 59.902 | 42.308 | 0.00 | 0.00 | 0.00 | 2.24 |
3845 | 6127 | 7.944729 | AGCCACTCTTGTTTTCATATACATT | 57.055 | 32.000 | 0.00 | 0.00 | 0.00 | 2.71 |
4178 | 6514 | 9.679661 | TGCTTGGAGAAAATATATGTAGTTCAA | 57.320 | 29.630 | 0.00 | 0.00 | 0.00 | 2.69 |
4341 | 6680 | 0.666913 | CCATGCAGCCATCAGTAAGC | 59.333 | 55.000 | 0.00 | 0.00 | 0.00 | 3.09 |
4486 | 6826 | 2.168521 | AGCTTGGCTTATGCTTCGAGTA | 59.831 | 45.455 | 0.13 | 0.00 | 36.47 | 2.59 |
4489 | 6829 | 3.861341 | AGCTTGGCTTATGCTTCGA | 57.139 | 47.368 | 0.13 | 0.00 | 36.47 | 3.71 |
4714 | 7096 | 5.388786 | GCAGTATGTGATATGTGTATGCACG | 60.389 | 44.000 | 9.48 | 0.00 | 43.37 | 5.34 |
4715 | 7097 | 5.466393 | TGCAGTATGTGATATGTGTATGCAC | 59.534 | 40.000 | 7.03 | 7.03 | 41.78 | 4.57 |
4716 | 7098 | 5.609423 | TGCAGTATGTGATATGTGTATGCA | 58.391 | 37.500 | 0.00 | 0.00 | 39.31 | 3.96 |
4717 | 7099 | 6.732531 | ATGCAGTATGTGATATGTGTATGC | 57.267 | 37.500 | 0.00 | 0.00 | 39.31 | 3.14 |
4718 | 7100 | 8.776470 | TCAAATGCAGTATGTGATATGTGTATG | 58.224 | 33.333 | 0.00 | 0.00 | 39.31 | 2.39 |
4719 | 7101 | 8.907222 | TCAAATGCAGTATGTGATATGTGTAT | 57.093 | 30.769 | 0.00 | 0.00 | 39.31 | 2.29 |
4720 | 7102 | 8.729805 | TTCAAATGCAGTATGTGATATGTGTA | 57.270 | 30.769 | 0.00 | 0.00 | 39.31 | 2.90 |
4721 | 7103 | 7.628769 | TTCAAATGCAGTATGTGATATGTGT | 57.371 | 32.000 | 0.00 | 0.00 | 39.31 | 3.72 |
4722 | 7104 | 8.914328 | TTTTCAAATGCAGTATGTGATATGTG | 57.086 | 30.769 | 0.00 | 0.00 | 39.31 | 3.21 |
4724 | 7106 | 9.961265 | AGATTTTCAAATGCAGTATGTGATATG | 57.039 | 29.630 | 0.00 | 0.00 | 39.31 | 1.78 |
4763 | 7145 | 7.160547 | ACTTTGATTTCATGATACATGTGCA | 57.839 | 32.000 | 9.11 | 7.16 | 0.00 | 4.57 |
4764 | 7146 | 7.221452 | GGAACTTTGATTTCATGATACATGTGC | 59.779 | 37.037 | 9.11 | 0.69 | 0.00 | 4.57 |
4789 | 7171 | 7.826260 | ATTTTATTCGTTTAAATGCCAGTGG | 57.174 | 32.000 | 4.20 | 4.20 | 0.00 | 4.00 |
5036 | 7418 | 0.593128 | CCCTTGCACTTTCGGTTCTG | 59.407 | 55.000 | 0.00 | 0.00 | 0.00 | 3.02 |
5172 | 7556 | 3.159472 | AGCAATGCATGGTCTTCAAAGA | 58.841 | 40.909 | 8.35 | 0.00 | 33.56 | 2.52 |
5332 | 7716 | 9.851686 | ATTTATTATTCATCTGTTGTGGCTAGA | 57.148 | 29.630 | 0.00 | 0.00 | 0.00 | 2.43 |
5444 | 7828 | 9.710900 | AGAGAAACAAAATCCAATATCCAAAAC | 57.289 | 29.630 | 0.00 | 0.00 | 0.00 | 2.43 |
5491 | 7877 | 8.730680 | GGTTAGAAACATTGAGCAGAAATCTTA | 58.269 | 33.333 | 0.00 | 0.00 | 0.00 | 2.10 |
5494 | 7880 | 6.803807 | GTGGTTAGAAACATTGAGCAGAAATC | 59.196 | 38.462 | 0.00 | 0.00 | 0.00 | 2.17 |
5495 | 7881 | 6.265196 | TGTGGTTAGAAACATTGAGCAGAAAT | 59.735 | 34.615 | 0.00 | 0.00 | 0.00 | 2.17 |
5526 | 7935 | 1.137086 | CTAGTGCCGAGCTACCACATT | 59.863 | 52.381 | 11.87 | 0.00 | 32.09 | 2.71 |
5572 | 7981 | 0.029834 | GCAATGCATGGGCGTTCTAG | 59.970 | 55.000 | 0.00 | 0.00 | 46.01 | 2.43 |
5604 | 8013 | 9.439461 | AGATGAGCCCTAAAGTATATGCATATA | 57.561 | 33.333 | 20.25 | 20.25 | 0.00 | 0.86 |
5605 | 8014 | 8.329346 | AGATGAGCCCTAAAGTATATGCATAT | 57.671 | 34.615 | 22.31 | 22.31 | 0.00 | 1.78 |
5606 | 8015 | 7.621285 | AGAGATGAGCCCTAAAGTATATGCATA | 59.379 | 37.037 | 9.27 | 9.27 | 0.00 | 3.14 |
5747 | 8158 | 6.683974 | ACAAGGTCATGCATGTCTAATTAC | 57.316 | 37.500 | 25.43 | 14.26 | 0.00 | 1.89 |
5799 | 8217 | 4.126437 | TGTATGTCAACACACAGTTCCAG | 58.874 | 43.478 | 0.00 | 0.00 | 38.74 | 3.86 |
5818 | 8236 | 8.698973 | TGTTCCTTTAGAAAAATGGACATGTA | 57.301 | 30.769 | 0.00 | 0.00 | 35.85 | 2.29 |
5888 | 8318 | 5.295787 | CACAATTACATGTTACCCGCATACT | 59.704 | 40.000 | 2.30 | 0.00 | 0.00 | 2.12 |
6281 | 8728 | 5.998363 | GGTTATGGAGGATGGTAAAGTGATC | 59.002 | 44.000 | 0.00 | 0.00 | 0.00 | 2.92 |

Based at the University of Bristol with support from BBSRC.
AutoCloner maintained by Alex Coulton.