Multiple sequence alignment - TraesCS2D01G004700

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2D01G004700 chr2D 100.000 2305 0 0 1 2305 2613568 2615872 0.000000e+00 4257.0
1 TraesCS2D01G004700 chr2D 90.807 1153 67 8 295 1440 2905056 2903936 0.000000e+00 1506.0
2 TraesCS2D01G004700 chr2D 83.243 370 26 18 1433 1777 2903305 2902947 9.330000e-80 307.0
3 TraesCS2D01G004700 chr2D 100.000 62 0 0 2623 2684 2616190 2616251 6.070000e-22 115.0
4 TraesCS2D01G004700 chr2D 84.884 86 8 4 1615 1699 2902495 2902414 6.160000e-12 82.4
5 TraesCS2D01G004700 chr2B 91.365 1575 86 18 264 1798 31300934 31302498 0.000000e+00 2109.0
6 TraesCS2D01G004700 chr2B 91.049 1430 90 12 295 1699 7776655 7778071 0.000000e+00 1897.0
7 TraesCS2D01G004700 chr2B 82.602 1391 192 27 314 1675 11475 10106 0.000000e+00 1182.0
8 TraesCS2D01G004700 chr2B 82.256 1392 195 27 306 1667 319425 318056 0.000000e+00 1155.0
9 TraesCS2D01G004700 chr2B 95.556 90 2 1 1 88 31300506 31300595 2.790000e-30 143.0
10 TraesCS2D01G004700 chr6D 89.668 1568 103 23 251 1792 18097948 18099482 0.000000e+00 1943.0
11 TraesCS2D01G004700 chr2A 82.040 1392 202 31 306 1667 1685665 1687038 0.000000e+00 1142.0
12 TraesCS2D01G004700 chr1B 76.887 212 29 15 1896 2099 511018643 511018444 4.730000e-18 102.0
13 TraesCS2D01G004700 chr5D 89.610 77 7 1 2004 2080 58259201 58259276 2.200000e-16 97.1
14 TraesCS2D01G004700 chr5A 88.312 77 8 1 2004 2080 46575570 46575645 1.020000e-14 91.6
15 TraesCS2D01G004700 chr5B 82.353 102 17 1 1979 2080 63365263 63365363 1.320000e-13 87.9


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2D01G004700 chr2D 2613568 2616251 2683 False 2186.0 4257 100.000000 1 2684 2 chr2D.!!$F1 2683
1 TraesCS2D01G004700 chr2D 2902414 2905056 2642 True 631.8 1506 86.311333 295 1777 3 chr2D.!!$R1 1482
2 TraesCS2D01G004700 chr2B 7776655 7778071 1416 False 1897.0 1897 91.049000 295 1699 1 chr2B.!!$F1 1404
3 TraesCS2D01G004700 chr2B 10106 11475 1369 True 1182.0 1182 82.602000 314 1675 1 chr2B.!!$R1 1361
4 TraesCS2D01G004700 chr2B 318056 319425 1369 True 1155.0 1155 82.256000 306 1667 1 chr2B.!!$R2 1361
5 TraesCS2D01G004700 chr2B 31300506 31302498 1992 False 1126.0 2109 93.460500 1 1798 2 chr2B.!!$F2 1797
6 TraesCS2D01G004700 chr6D 18097948 18099482 1534 False 1943.0 1943 89.668000 251 1792 1 chr6D.!!$F1 1541
7 TraesCS2D01G004700 chr2A 1685665 1687038 1373 False 1142.0 1142 82.040000 306 1667 1 chr2A.!!$F1 1361

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
711 956 1.21671 CTTCACGACCAGCCTCCTC 59.783 63.158 0.0 0.0 0.0 3.71 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1971 2938 0.031917 TATGGGCTAGGTTGGGTCGA 60.032 55.0 0.0 0.0 0.0 4.2 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
47 50 8.838365 ACATGCATGCTTTTTAAAAGAAAATCA 58.162 25.926 26.53 8.96 31.62 2.57
98 101 8.888579 AGTATAGTAAATGTATGTCAAGTGGC 57.111 34.615 0.00 0.00 0.00 5.01
99 102 8.482943 AGTATAGTAAATGTATGTCAAGTGGCA 58.517 33.333 0.00 0.00 0.00 4.92
100 103 5.880054 AGTAAATGTATGTCAAGTGGCAC 57.120 39.130 10.29 10.29 29.57 5.01
101 104 5.560724 AGTAAATGTATGTCAAGTGGCACT 58.439 37.500 15.88 15.88 29.57 4.40
102 105 6.707290 AGTAAATGTATGTCAAGTGGCACTA 58.293 36.000 22.37 5.27 29.57 2.74
103 106 7.338710 AGTAAATGTATGTCAAGTGGCACTAT 58.661 34.615 22.37 13.08 29.57 2.12
104 107 7.829211 AGTAAATGTATGTCAAGTGGCACTATT 59.171 33.333 22.37 11.18 29.57 1.73
105 108 6.683974 AATGTATGTCAAGTGGCACTATTC 57.316 37.500 22.37 13.84 29.57 1.75
106 109 5.159273 TGTATGTCAAGTGGCACTATTCA 57.841 39.130 22.37 18.74 29.57 2.57
107 110 5.555966 TGTATGTCAAGTGGCACTATTCAA 58.444 37.500 22.37 6.50 29.57 2.69
108 111 6.179756 TGTATGTCAAGTGGCACTATTCAAT 58.820 36.000 22.37 13.23 29.57 2.57
109 112 5.824904 ATGTCAAGTGGCACTATTCAATC 57.175 39.130 22.37 8.04 29.57 2.67
110 113 4.650734 TGTCAAGTGGCACTATTCAATCA 58.349 39.130 22.37 10.41 0.00 2.57
111 114 5.069318 TGTCAAGTGGCACTATTCAATCAA 58.931 37.500 22.37 0.00 0.00 2.57
112 115 5.711506 TGTCAAGTGGCACTATTCAATCAAT 59.288 36.000 22.37 0.00 0.00 2.57
116 119 8.243426 TCAAGTGGCACTATTCAATCAATTAAC 58.757 33.333 22.37 0.00 0.00 2.01
119 122 6.473455 GTGGCACTATTCAATCAATTAACTGC 59.527 38.462 11.13 0.00 0.00 4.40
279 506 5.678583 ACCTATGATCCACATCAAGTTGAG 58.321 41.667 11.91 6.29 42.53 3.02
336 563 2.522836 AGCTAGCAATCACGATGAGG 57.477 50.000 18.83 0.00 0.00 3.86
711 956 1.216710 CTTCACGACCAGCCTCCTC 59.783 63.158 0.00 0.00 0.00 3.71
732 977 1.530293 GACGATCTCGCCGTGTACTAT 59.470 52.381 0.00 0.00 44.43 2.12
793 1041 3.628646 ATGCAGGCCACCGAGTTCC 62.629 63.158 5.01 0.00 0.00 3.62
824 1072 4.345962 CACCGTGGGCGTGACGTA 62.346 66.667 6.91 0.00 34.97 3.57
970 1218 1.380515 TCCCTTCCTCTGCTCTCGG 60.381 63.158 0.00 0.00 0.00 4.63
1040 1288 1.964933 GGGCCTCATCTACCTAGACAC 59.035 57.143 0.84 0.00 34.72 3.67
1042 1290 1.609555 GCCTCATCTACCTAGACACCG 59.390 57.143 0.00 0.00 34.72 4.94
1044 1292 3.288964 CCTCATCTACCTAGACACCGTT 58.711 50.000 0.00 0.00 34.72 4.44
1053 1301 3.870606 GACACCGTTGTCCCGATG 58.129 61.111 0.89 0.00 45.77 3.84
1083 1331 1.067212 GACCGCATCAAGTCCGACTAT 59.933 52.381 0.26 0.00 0.00 2.12
1095 1343 1.671742 CGACTATAAGGCCGCCCAT 59.328 57.895 5.55 2.34 0.00 4.00
1477 2400 3.858868 AACGCGCTGATGGTGACGT 62.859 57.895 5.73 0.00 38.82 4.34
1593 2519 3.712907 TTAGTGTCCTGCGGGGCC 61.713 66.667 15.15 5.01 36.12 5.80
1702 2651 6.258947 GGCCTGAGTAACTATGAACTGAATTC 59.741 42.308 0.00 0.00 37.88 2.17
1709 2658 5.557891 ACTATGAACTGAATTCTTGCTGC 57.442 39.130 7.05 0.00 38.25 5.25
1710 2659 5.251764 ACTATGAACTGAATTCTTGCTGCT 58.748 37.500 7.05 0.00 38.25 4.24
1711 2660 3.909776 TGAACTGAATTCTTGCTGCTG 57.090 42.857 7.05 0.00 38.25 4.41
1712 2661 3.216800 TGAACTGAATTCTTGCTGCTGT 58.783 40.909 7.05 0.00 38.25 4.40
1713 2662 3.633525 TGAACTGAATTCTTGCTGCTGTT 59.366 39.130 7.05 0.00 38.25 3.16
1714 2663 4.098349 TGAACTGAATTCTTGCTGCTGTTT 59.902 37.500 7.05 0.00 38.25 2.83
1715 2664 3.973657 ACTGAATTCTTGCTGCTGTTTG 58.026 40.909 7.05 0.00 0.00 2.93
1716 2665 2.729882 CTGAATTCTTGCTGCTGTTTGC 59.270 45.455 7.05 0.00 43.25 3.68
1717 2666 2.363038 TGAATTCTTGCTGCTGTTTGCT 59.637 40.909 7.05 0.00 43.37 3.91
1718 2667 2.433868 ATTCTTGCTGCTGTTTGCTG 57.566 45.000 0.00 0.00 43.37 4.41
1738 2703 1.135431 GGCACGTACGTATGTGTGGTA 60.135 52.381 35.88 0.00 43.38 3.25
1739 2704 2.179589 GCACGTACGTATGTGTGGTAG 58.820 52.381 35.88 18.87 43.38 3.18
1748 2713 0.400213 ATGTGTGGTAGGGTGGTGTG 59.600 55.000 0.00 0.00 0.00 3.82
1755 2720 2.445119 TAGGGTGGTGTGCCGTTGT 61.445 57.895 0.00 0.00 37.67 3.32
1756 2721 2.386064 TAGGGTGGTGTGCCGTTGTC 62.386 60.000 0.00 0.00 37.67 3.18
1757 2722 3.645975 GGTGGTGTGCCGTTGTCG 61.646 66.667 0.00 0.00 37.67 4.35
1758 2723 2.586635 GTGGTGTGCCGTTGTCGA 60.587 61.111 0.00 0.00 39.71 4.20
1799 2766 8.145767 CGGTGAATAAGGTACTCCATTATGTTA 58.854 37.037 0.00 0.00 38.49 2.41
1804 2771 8.848474 ATAAGGTACTCCATTATGTTATGTGC 57.152 34.615 0.00 0.00 38.49 4.57
1805 2772 6.247229 AGGTACTCCATTATGTTATGTGCA 57.753 37.500 0.00 0.00 35.89 4.57
1806 2773 6.658849 AGGTACTCCATTATGTTATGTGCAA 58.341 36.000 0.00 0.00 35.89 4.08
1810 2777 6.179756 ACTCCATTATGTTATGTGCAAGTCA 58.820 36.000 0.00 0.00 0.00 3.41
1811 2778 6.658816 ACTCCATTATGTTATGTGCAAGTCAA 59.341 34.615 0.00 0.00 0.00 3.18
1812 2779 7.087409 TCCATTATGTTATGTGCAAGTCAAG 57.913 36.000 0.00 0.00 0.00 3.02
1813 2780 6.658816 TCCATTATGTTATGTGCAAGTCAAGT 59.341 34.615 0.00 0.00 0.00 3.16
1814 2781 7.176515 TCCATTATGTTATGTGCAAGTCAAGTT 59.823 33.333 0.00 0.00 0.00 2.66
1815 2782 7.485913 CCATTATGTTATGTGCAAGTCAAGTTC 59.514 37.037 0.00 0.00 0.00 3.01
1817 2784 3.568007 TGTTATGTGCAAGTCAAGTTCCC 59.432 43.478 0.00 0.00 0.00 3.97
1818 2785 2.664402 ATGTGCAAGTCAAGTTCCCT 57.336 45.000 0.00 0.00 0.00 4.20
1819 2786 1.679139 TGTGCAAGTCAAGTTCCCTG 58.321 50.000 0.00 0.00 0.00 4.45
1820 2787 1.211703 TGTGCAAGTCAAGTTCCCTGA 59.788 47.619 0.00 0.00 0.00 3.86
1821 2788 2.297701 GTGCAAGTCAAGTTCCCTGAA 58.702 47.619 0.00 0.00 0.00 3.02
1825 2792 4.405358 TGCAAGTCAAGTTCCCTGAAAATT 59.595 37.500 0.00 0.00 0.00 1.82
1827 2794 6.152379 GCAAGTCAAGTTCCCTGAAAATTAG 58.848 40.000 0.00 0.00 0.00 1.73
1829 2796 7.309438 GCAAGTCAAGTTCCCTGAAAATTAGAT 60.309 37.037 0.00 0.00 0.00 1.98
1830 2797 8.579863 CAAGTCAAGTTCCCTGAAAATTAGATT 58.420 33.333 0.00 0.00 0.00 2.40
1834 2801 7.834181 TCAAGTTCCCTGAAAATTAGATTAGGG 59.166 37.037 0.00 0.00 44.96 3.53
1835 2802 7.285340 AGTTCCCTGAAAATTAGATTAGGGT 57.715 36.000 12.58 0.00 44.16 4.34
1837 2804 8.842764 AGTTCCCTGAAAATTAGATTAGGGTAA 58.157 33.333 12.58 6.24 44.16 2.85
1838 2805 8.900781 GTTCCCTGAAAATTAGATTAGGGTAAC 58.099 37.037 12.58 11.65 44.16 2.50
1839 2806 8.401955 TCCCTGAAAATTAGATTAGGGTAACT 57.598 34.615 12.58 0.00 44.16 2.24
1840 2807 8.491958 TCCCTGAAAATTAGATTAGGGTAACTC 58.508 37.037 12.58 0.00 44.16 3.01
1842 2809 8.272173 CCTGAAAATTAGATTAGGGTAACTCCA 58.728 37.037 0.00 0.00 38.11 3.86
1843 2810 9.853177 CTGAAAATTAGATTAGGGTAACTCCAT 57.147 33.333 0.00 0.00 38.11 3.41
1850 2817 9.910267 TTAGATTAGGGTAACTCCATTTTTACC 57.090 33.333 2.45 2.45 44.55 2.85
1853 2820 8.818622 ATTAGGGTAACTCCATTTTTACCTTC 57.181 34.615 9.73 0.00 44.64 3.46
1854 2821 6.464530 AGGGTAACTCCATTTTTACCTTCT 57.535 37.500 9.73 0.00 44.64 2.85
1856 2823 5.353400 GGGTAACTCCATTTTTACCTTCTCG 59.647 44.000 9.73 0.00 44.64 4.04
1857 2824 5.353400 GGTAACTCCATTTTTACCTTCTCGG 59.647 44.000 3.70 0.00 42.76 4.63
1858 2825 4.903045 ACTCCATTTTTACCTTCTCGGA 57.097 40.909 0.00 0.00 36.31 4.55
1859 2826 4.576879 ACTCCATTTTTACCTTCTCGGAC 58.423 43.478 0.00 0.00 36.31 4.79
1860 2827 3.939592 CTCCATTTTTACCTTCTCGGACC 59.060 47.826 0.00 0.00 36.31 4.46
1861 2828 3.328343 TCCATTTTTACCTTCTCGGACCA 59.672 43.478 0.00 0.00 36.31 4.02
1881 2848 4.008933 GCCACACGCTCTCCCAGT 62.009 66.667 0.00 0.00 0.00 4.00
1882 2849 2.646175 GCCACACGCTCTCCCAGTA 61.646 63.158 0.00 0.00 0.00 2.74
1883 2850 1.215647 CCACACGCTCTCCCAGTAC 59.784 63.158 0.00 0.00 0.00 2.73
1885 2852 1.982938 ACACGCTCTCCCAGTACCC 60.983 63.158 0.00 0.00 0.00 3.69
1886 2853 1.982395 CACGCTCTCCCAGTACCCA 60.982 63.158 0.00 0.00 0.00 4.51
1889 2856 2.722201 GCTCTCCCAGTACCCACCG 61.722 68.421 0.00 0.00 0.00 4.94
1890 2857 2.038329 TCTCCCAGTACCCACCGG 59.962 66.667 0.00 0.00 0.00 5.28
1892 2859 2.605295 TCCCAGTACCCACCGGTG 60.605 66.667 28.26 28.26 44.40 4.94
1903 2870 1.643880 CCACCGGTGGTTAATACGAC 58.356 55.000 40.44 0.00 45.53 4.34
1904 2871 1.067000 CCACCGGTGGTTAATACGACA 60.067 52.381 40.44 0.00 45.53 4.35
1907 2874 2.264813 CCGGTGGTTAATACGACACAG 58.735 52.381 0.00 0.00 34.97 3.66
1908 2875 1.657094 CGGTGGTTAATACGACACAGC 59.343 52.381 0.00 0.00 34.97 4.40
1910 2877 2.414138 GGTGGTTAATACGACACAGCAC 59.586 50.000 0.00 0.00 34.97 4.40
1911 2878 3.061322 GTGGTTAATACGACACAGCACA 58.939 45.455 0.00 0.00 36.19 4.57
1912 2879 3.495377 GTGGTTAATACGACACAGCACAA 59.505 43.478 0.00 0.00 36.19 3.33
1913 2880 3.743911 TGGTTAATACGACACAGCACAAG 59.256 43.478 0.00 0.00 0.00 3.16
1916 2883 5.579511 GGTTAATACGACACAGCACAAGTAT 59.420 40.000 0.00 0.00 0.00 2.12
1917 2884 6.091713 GGTTAATACGACACAGCACAAGTATT 59.908 38.462 0.00 4.45 38.09 1.89
1918 2885 7.360607 GGTTAATACGACACAGCACAAGTATTT 60.361 37.037 4.35 0.00 36.54 1.40
1919 2886 6.554334 AATACGACACAGCACAAGTATTTT 57.446 33.333 0.00 0.00 32.81 1.82
1920 2887 7.661127 AATACGACACAGCACAAGTATTTTA 57.339 32.000 0.00 0.00 32.81 1.52
1921 2888 7.843490 ATACGACACAGCACAAGTATTTTAT 57.157 32.000 0.00 0.00 0.00 1.40
1923 2890 5.468746 ACGACACAGCACAAGTATTTTATGT 59.531 36.000 0.00 0.00 0.00 2.29
1924 2891 6.017440 ACGACACAGCACAAGTATTTTATGTT 60.017 34.615 0.00 0.00 0.00 2.71
1926 2893 8.012809 CGACACAGCACAAGTATTTTATGTTAA 58.987 33.333 0.00 0.00 0.00 2.01
1927 2894 9.329913 GACACAGCACAAGTATTTTATGTTAAG 57.670 33.333 0.00 0.00 0.00 1.85
1929 2896 9.117145 CACAGCACAAGTATTTTATGTTAAGTG 57.883 33.333 0.00 0.00 0.00 3.16
1930 2897 8.296713 ACAGCACAAGTATTTTATGTTAAGTGG 58.703 33.333 0.00 0.00 0.00 4.00
1932 2899 9.509956 AGCACAAGTATTTTATGTTAAGTGGTA 57.490 29.630 0.00 0.00 32.98 3.25
1954 2921 9.979578 TGGTAACATTTATTTGGCATATCAATC 57.020 29.630 0.00 0.00 46.17 2.67
1955 2922 9.423061 GGTAACATTTATTTGGCATATCAATCC 57.577 33.333 0.00 0.00 0.00 3.01
1956 2923 9.128107 GTAACATTTATTTGGCATATCAATCCG 57.872 33.333 0.00 0.00 0.00 4.18
1958 2925 7.370383 ACATTTATTTGGCATATCAATCCGTC 58.630 34.615 0.00 0.00 0.00 4.79
1960 2927 8.729756 CATTTATTTGGCATATCAATCCGTCTA 58.270 33.333 0.00 0.00 0.00 2.59
1961 2928 8.862325 TTTATTTGGCATATCAATCCGTCTAT 57.138 30.769 0.00 0.00 0.00 1.98
1963 2930 6.801539 TTTGGCATATCAATCCGTCTATTC 57.198 37.500 0.00 0.00 0.00 1.75
1964 2931 4.832248 TGGCATATCAATCCGTCTATTCC 58.168 43.478 0.00 0.00 0.00 3.01
1965 2932 4.285775 TGGCATATCAATCCGTCTATTCCA 59.714 41.667 0.00 0.00 0.00 3.53
1966 2933 5.045651 TGGCATATCAATCCGTCTATTCCAT 60.046 40.000 0.00 0.00 0.00 3.41
1967 2934 5.882557 GGCATATCAATCCGTCTATTCCATT 59.117 40.000 0.00 0.00 0.00 3.16
1969 2936 6.237942 GCATATCAATCCGTCTATTCCATTCG 60.238 42.308 0.00 0.00 0.00 3.34
1970 2937 4.929819 TCAATCCGTCTATTCCATTCGA 57.070 40.909 0.00 0.00 0.00 3.71
1971 2938 5.468540 TCAATCCGTCTATTCCATTCGAT 57.531 39.130 0.00 0.00 0.00 3.59
1972 2939 5.470368 TCAATCCGTCTATTCCATTCGATC 58.530 41.667 0.00 0.00 0.00 3.69
1974 2941 3.143728 TCCGTCTATTCCATTCGATCGA 58.856 45.455 15.15 15.15 0.00 3.59
1975 2942 3.058432 TCCGTCTATTCCATTCGATCGAC 60.058 47.826 19.26 1.50 0.00 4.20
1976 2943 3.235195 CGTCTATTCCATTCGATCGACC 58.765 50.000 19.26 0.00 0.00 4.79
1979 2946 3.639561 TCTATTCCATTCGATCGACCCAA 59.360 43.478 19.26 8.76 0.00 4.12
1981 2948 0.177141 TCCATTCGATCGACCCAACC 59.823 55.000 19.26 0.00 0.00 3.77
1983 2950 1.411246 CCATTCGATCGACCCAACCTA 59.589 52.381 19.26 0.00 0.00 3.08
1984 2951 2.545952 CCATTCGATCGACCCAACCTAG 60.546 54.545 19.26 0.10 0.00 3.02
1985 2952 0.458669 TTCGATCGACCCAACCTAGC 59.541 55.000 19.26 0.00 0.00 3.42
1986 2953 1.067582 CGATCGACCCAACCTAGCC 59.932 63.158 10.26 0.00 0.00 3.93
1987 2954 1.446366 GATCGACCCAACCTAGCCC 59.554 63.158 0.00 0.00 0.00 5.19
1988 2955 1.306654 ATCGACCCAACCTAGCCCA 60.307 57.895 0.00 0.00 0.00 5.36
1989 2956 0.694444 ATCGACCCAACCTAGCCCAT 60.694 55.000 0.00 0.00 0.00 4.00
1990 2957 0.031917 TCGACCCAACCTAGCCCATA 60.032 55.000 0.00 0.00 0.00 2.74
1991 2958 0.393077 CGACCCAACCTAGCCCATAG 59.607 60.000 0.00 0.00 0.00 2.23
1992 2959 1.802553 GACCCAACCTAGCCCATAGA 58.197 55.000 0.00 0.00 32.76 1.98
1993 2960 2.124411 GACCCAACCTAGCCCATAGAA 58.876 52.381 0.00 0.00 32.76 2.10
1994 2961 2.104963 GACCCAACCTAGCCCATAGAAG 59.895 54.545 0.00 0.00 32.76 2.85
1995 2962 2.293586 ACCCAACCTAGCCCATAGAAGA 60.294 50.000 0.00 0.00 32.76 2.87
1996 2963 2.104963 CCCAACCTAGCCCATAGAAGAC 59.895 54.545 0.00 0.00 32.76 3.01
1997 2964 2.771943 CCAACCTAGCCCATAGAAGACA 59.228 50.000 0.00 0.00 32.76 3.41
1998 2965 3.199946 CCAACCTAGCCCATAGAAGACAA 59.800 47.826 0.00 0.00 32.76 3.18
1999 2966 4.141390 CCAACCTAGCCCATAGAAGACAAT 60.141 45.833 0.00 0.00 32.76 2.71
2000 2967 5.071788 CCAACCTAGCCCATAGAAGACAATA 59.928 44.000 0.00 0.00 32.76 1.90
2001 2968 6.226787 CAACCTAGCCCATAGAAGACAATAG 58.773 44.000 0.00 0.00 32.76 1.73
2002 2969 5.716979 ACCTAGCCCATAGAAGACAATAGA 58.283 41.667 0.00 0.00 32.76 1.98
2003 2970 6.326970 ACCTAGCCCATAGAAGACAATAGAT 58.673 40.000 0.00 0.00 32.76 1.98
2004 2971 7.479579 ACCTAGCCCATAGAAGACAATAGATA 58.520 38.462 0.00 0.00 32.76 1.98
2005 2972 7.617723 ACCTAGCCCATAGAAGACAATAGATAG 59.382 40.741 0.00 0.00 32.76 2.08
2006 2973 7.617723 CCTAGCCCATAGAAGACAATAGATAGT 59.382 40.741 0.00 0.00 32.76 2.12
2007 2974 7.238486 AGCCCATAGAAGACAATAGATAGTG 57.762 40.000 0.00 0.00 0.00 2.74
2008 2975 6.784969 AGCCCATAGAAGACAATAGATAGTGT 59.215 38.462 0.00 0.00 37.19 3.55
2009 2976 7.950684 AGCCCATAGAAGACAATAGATAGTGTA 59.049 37.037 0.00 0.00 34.32 2.90
2010 2977 8.030106 GCCCATAGAAGACAATAGATAGTGTAC 58.970 40.741 0.00 0.00 34.32 2.90
2011 2978 8.524487 CCCATAGAAGACAATAGATAGTGTACC 58.476 40.741 0.00 0.00 34.32 3.34
2012 2979 9.303116 CCATAGAAGACAATAGATAGTGTACCT 57.697 37.037 0.00 0.00 34.32 3.08
2014 2981 7.826918 AGAAGACAATAGATAGTGTACCTCC 57.173 40.000 0.00 0.00 34.32 4.30
2015 2982 7.588169 AGAAGACAATAGATAGTGTACCTCCT 58.412 38.462 0.00 0.00 34.32 3.69
2016 2983 7.504238 AGAAGACAATAGATAGTGTACCTCCTG 59.496 40.741 0.00 0.00 34.32 3.86
2017 2984 6.912426 AGACAATAGATAGTGTACCTCCTGA 58.088 40.000 0.00 0.00 34.32 3.86
2018 2985 7.531317 AGACAATAGATAGTGTACCTCCTGAT 58.469 38.462 0.00 0.00 34.32 2.90
2019 2986 7.450014 AGACAATAGATAGTGTACCTCCTGATG 59.550 40.741 0.00 0.00 34.32 3.07
2020 2987 7.069986 ACAATAGATAGTGTACCTCCTGATGT 58.930 38.462 0.00 0.00 32.15 3.06
2021 2988 7.014711 ACAATAGATAGTGTACCTCCTGATGTG 59.985 40.741 0.00 0.00 32.15 3.21
2022 2989 4.219115 AGATAGTGTACCTCCTGATGTGG 58.781 47.826 0.00 0.00 0.00 4.17
2023 2990 2.327325 AGTGTACCTCCTGATGTGGT 57.673 50.000 0.00 0.00 43.21 4.16
2024 2991 2.180276 AGTGTACCTCCTGATGTGGTC 58.820 52.381 0.00 0.00 41.11 4.02
2025 2992 1.899814 GTGTACCTCCTGATGTGGTCA 59.100 52.381 0.00 0.00 41.11 4.02
2026 2993 1.899814 TGTACCTCCTGATGTGGTCAC 59.100 52.381 0.00 0.00 41.11 3.67
2027 2994 2.180276 GTACCTCCTGATGTGGTCACT 58.820 52.381 2.66 0.00 41.11 3.41
2028 2995 1.734655 ACCTCCTGATGTGGTCACTT 58.265 50.000 2.66 0.00 36.02 3.16
2029 2996 2.057922 ACCTCCTGATGTGGTCACTTT 58.942 47.619 2.66 0.00 36.02 2.66
2030 2997 2.039084 ACCTCCTGATGTGGTCACTTTC 59.961 50.000 2.66 1.17 36.02 2.62
2031 2998 2.304180 CCTCCTGATGTGGTCACTTTCT 59.696 50.000 2.66 0.00 32.22 2.52
2032 2999 3.244700 CCTCCTGATGTGGTCACTTTCTT 60.245 47.826 2.66 0.00 32.22 2.52
2033 3000 3.999663 CTCCTGATGTGGTCACTTTCTTC 59.000 47.826 2.66 0.00 32.22 2.87
2034 3001 3.077359 CCTGATGTGGTCACTTTCTTCC 58.923 50.000 2.66 0.00 32.22 3.46
2035 3002 3.244700 CCTGATGTGGTCACTTTCTTCCT 60.245 47.826 2.66 0.00 32.22 3.36
2036 3003 4.392940 CTGATGTGGTCACTTTCTTCCTT 58.607 43.478 2.66 0.00 32.22 3.36
2037 3004 4.389374 TGATGTGGTCACTTTCTTCCTTC 58.611 43.478 2.66 0.00 0.00 3.46
2038 3005 3.924114 TGTGGTCACTTTCTTCCTTCA 57.076 42.857 2.66 0.00 0.00 3.02
2039 3006 4.437682 TGTGGTCACTTTCTTCCTTCAT 57.562 40.909 2.66 0.00 0.00 2.57
2040 3007 5.560722 TGTGGTCACTTTCTTCCTTCATA 57.439 39.130 2.66 0.00 0.00 2.15
2041 3008 5.935945 TGTGGTCACTTTCTTCCTTCATAA 58.064 37.500 2.66 0.00 0.00 1.90
2042 3009 6.361433 TGTGGTCACTTTCTTCCTTCATAAA 58.639 36.000 2.66 0.00 0.00 1.40
2043 3010 6.831353 TGTGGTCACTTTCTTCCTTCATAAAA 59.169 34.615 2.66 0.00 0.00 1.52
2044 3011 7.340743 TGTGGTCACTTTCTTCCTTCATAAAAA 59.659 33.333 2.66 0.00 0.00 1.94
2062 3029 3.923017 AAAACACACCATAGCTGAAGC 57.077 42.857 0.00 0.00 42.49 3.86
2063 3030 2.566833 AACACACCATAGCTGAAGCA 57.433 45.000 4.90 0.00 45.16 3.91
2064 3031 2.566833 ACACACCATAGCTGAAGCAA 57.433 45.000 4.90 0.00 45.16 3.91
2065 3032 2.862541 ACACACCATAGCTGAAGCAAA 58.137 42.857 4.90 0.00 45.16 3.68
2066 3033 3.221771 ACACACCATAGCTGAAGCAAAA 58.778 40.909 4.90 0.00 45.16 2.44
2067 3034 3.254166 ACACACCATAGCTGAAGCAAAAG 59.746 43.478 4.90 0.00 45.16 2.27
2068 3035 2.821969 ACACCATAGCTGAAGCAAAAGG 59.178 45.455 4.90 3.63 45.16 3.11
2069 3036 2.165030 CACCATAGCTGAAGCAAAAGGG 59.835 50.000 4.90 3.58 45.16 3.95
2070 3037 1.753073 CCATAGCTGAAGCAAAAGGGG 59.247 52.381 4.90 0.00 45.16 4.79
2071 3038 1.753073 CATAGCTGAAGCAAAAGGGGG 59.247 52.381 4.90 0.00 45.16 5.40
2072 3039 0.611896 TAGCTGAAGCAAAAGGGGGC 60.612 55.000 4.90 0.00 45.16 5.80
2073 3040 2.209315 GCTGAAGCAAAAGGGGGCA 61.209 57.895 0.00 0.00 41.59 5.36
2074 3041 1.757423 GCTGAAGCAAAAGGGGGCAA 61.757 55.000 0.00 0.00 41.59 4.52
2075 3042 0.978907 CTGAAGCAAAAGGGGGCAAT 59.021 50.000 0.00 0.00 0.00 3.56
2076 3043 0.686224 TGAAGCAAAAGGGGGCAATG 59.314 50.000 0.00 0.00 0.00 2.82
2077 3044 0.674581 GAAGCAAAAGGGGGCAATGC 60.675 55.000 0.00 0.00 37.28 3.56
2088 3055 3.502237 GGCAATGCCTGTTGACAAG 57.498 52.632 18.47 0.00 46.69 3.16
2089 3056 0.675633 GGCAATGCCTGTTGACAAGT 59.324 50.000 18.47 0.00 46.69 3.16
2090 3057 1.885887 GGCAATGCCTGTTGACAAGTA 59.114 47.619 18.47 0.00 46.69 2.24
2091 3058 2.493278 GGCAATGCCTGTTGACAAGTAT 59.507 45.455 18.47 0.00 46.69 2.12
2092 3059 3.056607 GGCAATGCCTGTTGACAAGTATT 60.057 43.478 18.47 0.00 46.69 1.89
2093 3060 4.168760 GCAATGCCTGTTGACAAGTATTC 58.831 43.478 0.00 0.00 0.00 1.75
2094 3061 4.321156 GCAATGCCTGTTGACAAGTATTCA 60.321 41.667 0.00 0.00 0.00 2.57
2095 3062 5.622914 GCAATGCCTGTTGACAAGTATTCAT 60.623 40.000 0.00 0.00 0.00 2.57
2096 3063 5.571784 ATGCCTGTTGACAAGTATTCATG 57.428 39.130 0.00 0.00 0.00 3.07
2097 3064 4.650734 TGCCTGTTGACAAGTATTCATGA 58.349 39.130 0.00 0.00 0.00 3.07
2098 3065 4.696877 TGCCTGTTGACAAGTATTCATGAG 59.303 41.667 0.00 0.00 0.00 2.90
2099 3066 4.937620 GCCTGTTGACAAGTATTCATGAGA 59.062 41.667 0.00 0.00 0.00 3.27
2100 3067 5.064452 GCCTGTTGACAAGTATTCATGAGAG 59.936 44.000 0.00 0.00 0.00 3.20
2101 3068 5.064452 CCTGTTGACAAGTATTCATGAGAGC 59.936 44.000 0.00 0.00 0.00 4.09
2102 3069 5.798132 TGTTGACAAGTATTCATGAGAGCT 58.202 37.500 0.00 0.00 0.00 4.09
2103 3070 5.871524 TGTTGACAAGTATTCATGAGAGCTC 59.128 40.000 5.27 5.27 0.00 4.09
2104 3071 5.929058 TGACAAGTATTCATGAGAGCTCT 57.071 39.130 18.28 18.28 0.00 4.09
2105 3072 7.093771 TGTTGACAAGTATTCATGAGAGCTCTA 60.094 37.037 18.25 5.78 0.00 2.43
2106 3073 7.410120 TGACAAGTATTCATGAGAGCTCTAA 57.590 36.000 18.25 10.48 0.00 2.10
2107 3074 7.840931 TGACAAGTATTCATGAGAGCTCTAAA 58.159 34.615 18.25 8.78 0.00 1.85
2108 3075 7.978414 TGACAAGTATTCATGAGAGCTCTAAAG 59.022 37.037 18.25 6.60 0.00 1.85
2109 3076 8.072321 ACAAGTATTCATGAGAGCTCTAAAGA 57.928 34.615 18.25 9.39 0.00 2.52
2110 3077 8.703743 ACAAGTATTCATGAGAGCTCTAAAGAT 58.296 33.333 18.25 9.89 0.00 2.40
2111 3078 9.545105 CAAGTATTCATGAGAGCTCTAAAGATT 57.455 33.333 18.25 10.82 0.00 2.40
2116 3083 7.081526 TCATGAGAGCTCTAAAGATTTTTGC 57.918 36.000 18.25 0.00 0.00 3.68
2117 3084 6.883217 TCATGAGAGCTCTAAAGATTTTTGCT 59.117 34.615 18.25 0.00 0.00 3.91
2118 3085 6.734104 TGAGAGCTCTAAAGATTTTTGCTC 57.266 37.500 18.25 10.04 43.77 4.26
2119 3086 5.349817 TGAGAGCTCTAAAGATTTTTGCTCG 59.650 40.000 18.25 0.00 46.69 5.03
2120 3087 4.094146 AGAGCTCTAAAGATTTTTGCTCGC 59.906 41.667 16.50 1.86 46.69 5.03
2121 3088 4.006319 AGCTCTAAAGATTTTTGCTCGCT 58.994 39.130 0.00 0.00 0.00 4.93
2122 3089 5.178797 AGCTCTAAAGATTTTTGCTCGCTA 58.821 37.500 0.00 0.00 0.00 4.26
2123 3090 5.643777 AGCTCTAAAGATTTTTGCTCGCTAA 59.356 36.000 0.00 0.00 0.00 3.09
2124 3091 5.962423 GCTCTAAAGATTTTTGCTCGCTAAG 59.038 40.000 0.00 0.00 0.00 2.18
2144 3111 3.010420 AGCGGAAGAAGCTTAATGAACC 58.990 45.455 0.00 0.00 43.24 3.62
2145 3112 2.223044 GCGGAAGAAGCTTAATGAACCG 60.223 50.000 16.71 16.71 40.60 4.44
2146 3113 3.259064 CGGAAGAAGCTTAATGAACCGA 58.741 45.455 16.31 0.00 40.16 4.69
2147 3114 3.307242 CGGAAGAAGCTTAATGAACCGAG 59.693 47.826 16.31 0.00 40.16 4.63
2148 3115 3.064134 GGAAGAAGCTTAATGAACCGAGC 59.936 47.826 0.00 0.00 35.42 5.03
2149 3116 2.633488 AGAAGCTTAATGAACCGAGCC 58.367 47.619 0.00 0.00 35.79 4.70
2150 3117 2.237392 AGAAGCTTAATGAACCGAGCCT 59.763 45.455 0.00 0.00 35.79 4.58
2151 3118 2.789409 AGCTTAATGAACCGAGCCTT 57.211 45.000 0.00 0.00 35.79 4.35
2152 3119 3.906720 AGCTTAATGAACCGAGCCTTA 57.093 42.857 0.00 0.00 35.79 2.69
2153 3120 4.216411 AGCTTAATGAACCGAGCCTTAA 57.784 40.909 0.00 0.00 35.79 1.85
2154 3121 3.939592 AGCTTAATGAACCGAGCCTTAAC 59.060 43.478 0.00 0.00 35.79 2.01
2155 3122 3.687698 GCTTAATGAACCGAGCCTTAACA 59.312 43.478 0.00 0.00 0.00 2.41
2156 3123 4.155280 GCTTAATGAACCGAGCCTTAACAA 59.845 41.667 0.00 0.00 0.00 2.83
2157 3124 5.673818 GCTTAATGAACCGAGCCTTAACAAG 60.674 44.000 0.00 0.00 0.00 3.16
2158 3125 1.519408 TGAACCGAGCCTTAACAAGC 58.481 50.000 0.00 0.00 0.00 4.01
2159 3126 1.071699 TGAACCGAGCCTTAACAAGCT 59.928 47.619 0.00 0.00 43.55 3.74
2160 3127 2.300723 TGAACCGAGCCTTAACAAGCTA 59.699 45.455 0.00 0.00 40.11 3.32
2161 3128 3.055385 TGAACCGAGCCTTAACAAGCTAT 60.055 43.478 0.00 0.00 40.11 2.97
2162 3129 2.906354 ACCGAGCCTTAACAAGCTATG 58.094 47.619 0.00 0.00 40.11 2.23
2163 3130 1.599542 CCGAGCCTTAACAAGCTATGC 59.400 52.381 0.00 0.00 40.11 3.14
2164 3131 2.279741 CGAGCCTTAACAAGCTATGCA 58.720 47.619 0.00 0.00 40.11 3.96
2165 3132 2.874701 CGAGCCTTAACAAGCTATGCAT 59.125 45.455 3.79 3.79 40.11 3.96
2166 3133 3.059325 CGAGCCTTAACAAGCTATGCATC 60.059 47.826 0.19 0.00 40.11 3.91
2167 3134 4.133078 GAGCCTTAACAAGCTATGCATCT 58.867 43.478 0.19 0.00 40.11 2.90
2168 3135 4.530875 AGCCTTAACAAGCTATGCATCTT 58.469 39.130 0.19 0.00 37.64 2.40
2169 3136 4.337555 AGCCTTAACAAGCTATGCATCTTG 59.662 41.667 20.81 20.81 43.79 3.02
2179 3146 8.566008 CAAGCTATGCATCTTGTTAATTTACC 57.434 34.615 16.34 0.00 36.01 2.85
2180 3147 7.277174 AGCTATGCATCTTGTTAATTTACCC 57.723 36.000 0.19 0.00 0.00 3.69
2181 3148 6.265422 AGCTATGCATCTTGTTAATTTACCCC 59.735 38.462 0.19 0.00 0.00 4.95
2182 3149 4.974368 TGCATCTTGTTAATTTACCCCG 57.026 40.909 0.00 0.00 0.00 5.73
2183 3150 3.129638 TGCATCTTGTTAATTTACCCCGC 59.870 43.478 0.00 0.00 0.00 6.13
2184 3151 3.490249 GCATCTTGTTAATTTACCCCGCC 60.490 47.826 0.00 0.00 0.00 6.13
2185 3152 2.725637 TCTTGTTAATTTACCCCGCCC 58.274 47.619 0.00 0.00 0.00 6.13
2186 3153 1.752498 CTTGTTAATTTACCCCGCCCC 59.248 52.381 0.00 0.00 0.00 5.80
2201 3168 2.588877 CCCCCTTGCGACATAGCG 60.589 66.667 0.00 0.00 40.67 4.26
2207 3174 4.569023 TGCGACATAGCGGAGGCG 62.569 66.667 0.00 0.00 46.35 5.52
2208 3175 4.266070 GCGACATAGCGGAGGCGA 62.266 66.667 4.77 0.00 46.35 5.54
2209 3176 2.050895 CGACATAGCGGAGGCGAG 60.051 66.667 0.00 0.00 46.35 5.03
2210 3177 2.543802 CGACATAGCGGAGGCGAGA 61.544 63.158 0.00 0.00 46.35 4.04
2211 3178 1.857318 CGACATAGCGGAGGCGAGAT 61.857 60.000 0.00 0.00 46.35 2.75
2212 3179 0.387878 GACATAGCGGAGGCGAGATG 60.388 60.000 0.00 0.00 46.35 2.90
2213 3180 1.735920 CATAGCGGAGGCGAGATGC 60.736 63.158 0.00 0.00 46.35 3.91
2222 3189 2.202987 GCGAGATGCACCCTGAGG 60.203 66.667 0.00 0.00 45.45 3.86
2224 3191 1.900351 CGAGATGCACCCTGAGGAA 59.100 57.895 0.00 0.00 36.73 3.36
2225 3192 0.179089 CGAGATGCACCCTGAGGAAG 60.179 60.000 0.00 0.00 36.73 3.46
2226 3193 1.198713 GAGATGCACCCTGAGGAAGA 58.801 55.000 0.00 0.00 36.73 2.87
2227 3194 1.767681 GAGATGCACCCTGAGGAAGAT 59.232 52.381 0.00 0.00 36.73 2.40
2228 3195 2.968574 GAGATGCACCCTGAGGAAGATA 59.031 50.000 0.00 0.00 36.73 1.98
2229 3196 2.971330 AGATGCACCCTGAGGAAGATAG 59.029 50.000 0.00 0.00 36.73 2.08
2230 3197 1.500474 TGCACCCTGAGGAAGATAGG 58.500 55.000 0.00 0.00 36.73 2.57
2235 3336 2.316372 ACCCTGAGGAAGATAGGTGAGT 59.684 50.000 0.00 0.00 36.73 3.41
2245 3346 1.899437 ATAGGTGAGTGTGGTGGCGG 61.899 60.000 0.00 0.00 0.00 6.13
2261 3362 4.018609 GGCGACGACAGGATGATG 57.981 61.111 0.00 0.00 39.69 3.07
2262 3363 1.141881 GGCGACGACAGGATGATGT 59.858 57.895 0.00 0.00 39.69 3.06
2263 3364 1.148157 GGCGACGACAGGATGATGTG 61.148 60.000 0.00 0.00 39.69 3.21
2266 3367 1.645034 GACGACAGGATGATGTGTGG 58.355 55.000 0.00 0.00 39.69 4.17
2268 3369 1.347707 ACGACAGGATGATGTGTGGTT 59.652 47.619 0.00 0.00 39.69 3.67
2270 3371 3.007506 ACGACAGGATGATGTGTGGTTTA 59.992 43.478 0.00 0.00 39.69 2.01
2271 3372 4.191544 CGACAGGATGATGTGTGGTTTAT 58.808 43.478 0.00 0.00 39.69 1.40
2274 3375 7.151976 CGACAGGATGATGTGTGGTTTATATA 58.848 38.462 0.00 0.00 39.69 0.86
2275 3376 7.116376 CGACAGGATGATGTGTGGTTTATATAC 59.884 40.741 0.00 0.00 39.69 1.47
2277 3378 6.655003 CAGGATGATGTGTGGTTTATATACCC 59.345 42.308 9.57 2.75 39.69 3.69
2278 3379 5.642063 GGATGATGTGTGGTTTATATACCCG 59.358 44.000 9.57 0.00 37.39 5.28
2279 3380 4.382291 TGATGTGTGGTTTATATACCCGC 58.618 43.478 9.57 8.16 37.39 6.13
2281 3382 2.429971 TGTGTGGTTTATATACCCGCGA 59.570 45.455 8.23 0.00 37.39 5.87
2282 3383 3.054878 GTGTGGTTTATATACCCGCGAG 58.945 50.000 8.23 0.00 37.39 5.03
2283 3384 2.694628 TGTGGTTTATATACCCGCGAGT 59.305 45.455 8.23 1.50 37.39 4.18
2284 3385 3.054878 GTGGTTTATATACCCGCGAGTG 58.945 50.000 8.23 0.00 37.39 3.51
2285 3386 2.036217 TGGTTTATATACCCGCGAGTGG 59.964 50.000 8.23 2.08 37.39 4.00
2287 3388 1.330234 TTATATACCCGCGAGTGGCA 58.670 50.000 8.23 0.00 43.84 4.92
2288 3389 0.599558 TATATACCCGCGAGTGGCAC 59.400 55.000 8.23 10.29 43.84 5.01
2296 3397 4.767255 CGAGTGGCACCCTCTGGC 62.767 72.222 15.27 0.00 45.98 4.85
2664 3765 3.685139 AAAAGAGAAGTGGCGATCTCA 57.315 42.857 14.00 0.00 43.62 3.27
2665 3766 3.902881 AAAGAGAAGTGGCGATCTCAT 57.097 42.857 14.00 2.39 43.62 2.90
2666 3767 3.902881 AAGAGAAGTGGCGATCTCATT 57.097 42.857 14.00 5.40 43.62 2.57
2667 3768 5.344743 AAAGAGAAGTGGCGATCTCATTA 57.655 39.130 14.00 0.00 43.62 1.90
2668 3769 5.543507 AAGAGAAGTGGCGATCTCATTAT 57.456 39.130 14.00 0.00 43.62 1.28
2669 3770 4.880759 AGAGAAGTGGCGATCTCATTATG 58.119 43.478 14.00 0.00 43.62 1.90
2670 3771 4.586421 AGAGAAGTGGCGATCTCATTATGA 59.414 41.667 14.00 0.00 43.62 2.15
2671 3772 4.880759 AGAAGTGGCGATCTCATTATGAG 58.119 43.478 15.53 15.53 45.59 2.90
2672 3773 3.674528 AGTGGCGATCTCATTATGAGG 57.325 47.619 20.51 7.37 44.39 3.86
2673 3774 2.301296 AGTGGCGATCTCATTATGAGGG 59.699 50.000 20.51 11.99 44.39 4.30
2674 3775 1.625315 TGGCGATCTCATTATGAGGGG 59.375 52.381 20.51 11.68 44.39 4.79
2675 3776 1.902508 GGCGATCTCATTATGAGGGGA 59.097 52.381 20.51 3.91 44.39 4.81
2676 3777 2.093764 GGCGATCTCATTATGAGGGGAG 60.094 54.545 20.51 11.48 44.39 4.30
2677 3778 2.093764 GCGATCTCATTATGAGGGGAGG 60.094 54.545 20.51 8.35 44.39 4.30
2678 3779 3.435275 CGATCTCATTATGAGGGGAGGA 58.565 50.000 20.51 2.49 44.39 3.71
2679 3780 3.446873 CGATCTCATTATGAGGGGAGGAG 59.553 52.174 20.51 4.03 44.39 3.69
2680 3781 3.266477 TCTCATTATGAGGGGAGGAGG 57.734 52.381 20.51 0.00 44.39 4.30
2681 3782 2.524440 TCTCATTATGAGGGGAGGAGGT 59.476 50.000 20.51 0.00 44.39 3.85
2682 3783 3.732742 TCTCATTATGAGGGGAGGAGGTA 59.267 47.826 20.51 0.00 44.39 3.08
2683 3784 4.361367 TCTCATTATGAGGGGAGGAGGTAT 59.639 45.833 20.51 0.00 44.39 2.73
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
88 91 4.650734 TGATTGAATAGTGCCACTTGACA 58.349 39.130 1.02 0.00 0.00 3.58
89 92 5.627499 TTGATTGAATAGTGCCACTTGAC 57.373 39.130 1.02 0.00 0.00 3.18
90 93 6.839124 AATTGATTGAATAGTGCCACTTGA 57.161 33.333 1.02 0.00 0.00 3.02
91 94 8.246180 AGTTAATTGATTGAATAGTGCCACTTG 58.754 33.333 1.02 0.00 0.00 3.16
92 95 8.246180 CAGTTAATTGATTGAATAGTGCCACTT 58.754 33.333 1.02 0.00 0.00 3.16
93 96 7.629222 GCAGTTAATTGATTGAATAGTGCCACT 60.629 37.037 1.54 1.54 0.00 4.00
94 97 6.473455 GCAGTTAATTGATTGAATAGTGCCAC 59.527 38.462 1.56 0.00 0.00 5.01
95 98 6.563422 GCAGTTAATTGATTGAATAGTGCCA 58.437 36.000 1.56 0.00 0.00 4.92
96 99 5.682862 CGCAGTTAATTGATTGAATAGTGCC 59.317 40.000 1.56 0.00 0.00 5.01
97 100 6.412072 GTCGCAGTTAATTGATTGAATAGTGC 59.588 38.462 1.56 0.00 0.00 4.40
98 101 7.463544 TGTCGCAGTTAATTGATTGAATAGTG 58.536 34.615 1.56 0.00 0.00 2.74
99 102 7.609760 TGTCGCAGTTAATTGATTGAATAGT 57.390 32.000 1.56 0.00 0.00 2.12
100 103 6.630443 GCTGTCGCAGTTAATTGATTGAATAG 59.370 38.462 1.56 1.05 33.43 1.73
101 104 6.093357 TGCTGTCGCAGTTAATTGATTGAATA 59.907 34.615 1.56 0.00 42.25 1.75
102 105 5.106197 TGCTGTCGCAGTTAATTGATTGAAT 60.106 36.000 1.56 0.00 42.25 2.57
103 106 4.215185 TGCTGTCGCAGTTAATTGATTGAA 59.785 37.500 1.56 0.00 42.25 2.69
104 107 3.750652 TGCTGTCGCAGTTAATTGATTGA 59.249 39.130 1.56 0.00 42.25 2.57
105 108 4.082274 TGCTGTCGCAGTTAATTGATTG 57.918 40.909 1.56 0.00 42.25 2.67
119 122 3.123804 GGAGTATGTATTGGTGCTGTCG 58.876 50.000 0.00 0.00 0.00 4.35
126 129 3.906720 ACAAGCGGAGTATGTATTGGT 57.093 42.857 0.00 0.00 0.00 3.67
245 357 7.797121 TGTGGATCATAGGTATCATGTACAT 57.203 36.000 1.41 1.41 0.00 2.29
248 360 8.434589 TTGATGTGGATCATAGGTATCATGTA 57.565 34.615 0.00 0.00 38.43 2.29
249 361 6.940430 TGATGTGGATCATAGGTATCATGT 57.060 37.500 0.00 0.00 36.83 3.21
257 478 4.514441 GCTCAACTTGATGTGGATCATAGG 59.486 45.833 0.00 0.00 38.43 2.57
259 480 4.164796 AGGCTCAACTTGATGTGGATCATA 59.835 41.667 0.00 0.00 38.43 2.15
336 563 1.618640 GAGACTTGCTCACCGCGAAC 61.619 60.000 8.23 0.00 43.38 3.95
782 1030 4.760047 CGCAGGGGAACTCGGTGG 62.760 72.222 0.00 0.00 0.00 4.61
892 1140 1.153765 CCGACGCATCAGCTTCAGA 60.154 57.895 0.00 0.00 38.83 3.27
922 1170 3.771160 GTCCCTGACCGGCGTGAT 61.771 66.667 6.01 0.00 0.00 3.06
1040 1288 1.079127 AGCTTCATCGGGACAACGG 60.079 57.895 0.00 0.00 0.00 4.44
1042 1290 1.936547 GATGAGCTTCATCGGGACAAC 59.063 52.381 9.44 0.00 43.11 3.32
1051 1299 0.105593 ATGCGGTCGATGAGCTTCAT 59.894 50.000 10.26 0.00 40.34 2.57
1053 1301 0.528466 TGATGCGGTCGATGAGCTTC 60.528 55.000 14.25 14.25 36.15 3.86
1083 1331 4.183858 CCGGAATGGGCGGCCTTA 62.184 66.667 29.87 10.50 0.00 2.69
1095 1343 1.301087 CGTTGTGCAGTACCCGGAA 60.301 57.895 0.73 0.00 0.00 4.30
1203 1478 3.626924 ACGAAGAAGGCCAGCGGT 61.627 61.111 5.01 0.00 0.00 5.68
1257 1532 1.355796 CGACCGCGCAGTTTCCATAA 61.356 55.000 8.75 0.00 0.00 1.90
1317 1592 2.285368 TTCATGCCCTCGTCCCCT 60.285 61.111 0.00 0.00 0.00 4.79
1487 2410 2.158959 GCGTCGTCGAACCTGATGG 61.159 63.158 6.17 0.00 39.71 3.51
1570 2496 2.380410 CGCAGGACACTAACGCCAC 61.380 63.158 0.00 0.00 0.00 5.01
1596 2522 4.828925 GTCAGCAGCCTCTCGCCC 62.829 72.222 0.00 0.00 38.78 6.13
1669 2607 2.214216 TTACTCAGGCCAGGCGTGT 61.214 57.895 29.09 16.42 43.65 4.49
1709 2658 1.204062 CGTACGTGCCAGCAAACAG 59.796 57.895 7.22 0.00 0.00 3.16
1710 2659 0.249363 TACGTACGTGCCAGCAAACA 60.249 50.000 30.25 3.44 0.00 2.83
1711 2660 1.073177 ATACGTACGTGCCAGCAAAC 58.927 50.000 30.25 0.00 0.00 2.93
1712 2661 1.072391 CATACGTACGTGCCAGCAAA 58.928 50.000 30.25 8.49 0.00 3.68
1713 2662 0.038067 ACATACGTACGTGCCAGCAA 60.038 50.000 30.25 9.30 0.00 3.91
1714 2663 0.734597 CACATACGTACGTGCCAGCA 60.735 55.000 30.25 10.09 0.00 4.41
1715 2664 0.734942 ACACATACGTACGTGCCAGC 60.735 55.000 30.25 0.00 36.57 4.85
1716 2665 0.989164 CACACATACGTACGTGCCAG 59.011 55.000 30.25 18.77 36.57 4.85
1717 2666 0.388778 CCACACATACGTACGTGCCA 60.389 55.000 30.25 11.71 36.57 4.92
1718 2667 0.388907 ACCACACATACGTACGTGCC 60.389 55.000 30.25 0.00 36.57 5.01
1738 2703 3.767630 GACAACGGCACACCACCCT 62.768 63.158 0.00 0.00 34.57 4.34
1739 2704 3.284449 GACAACGGCACACCACCC 61.284 66.667 0.00 0.00 34.57 4.61
1748 2713 1.007336 ACTCAACGATCGACAACGGC 61.007 55.000 24.34 0.00 40.21 5.68
1755 2720 1.667756 CCGGAACAACTCAACGATCGA 60.668 52.381 24.34 0.00 0.00 3.59
1756 2721 0.713883 CCGGAACAACTCAACGATCG 59.286 55.000 14.88 14.88 0.00 3.69
1757 2722 1.459592 CACCGGAACAACTCAACGATC 59.540 52.381 9.46 0.00 0.00 3.69
1758 2723 1.069513 TCACCGGAACAACTCAACGAT 59.930 47.619 9.46 0.00 0.00 3.73
1799 2766 2.158623 TCAGGGAACTTGACTTGCACAT 60.159 45.455 0.00 0.00 40.21 3.21
1800 2767 1.211703 TCAGGGAACTTGACTTGCACA 59.788 47.619 0.00 0.00 40.21 4.57
1801 2768 1.967319 TCAGGGAACTTGACTTGCAC 58.033 50.000 0.00 0.00 40.21 4.57
1803 2770 4.590850 ATTTTCAGGGAACTTGACTTGC 57.409 40.909 0.00 0.00 40.21 4.01
1804 2771 7.510549 TCTAATTTTCAGGGAACTTGACTTG 57.489 36.000 0.00 0.00 40.21 3.16
1805 2772 8.712228 AATCTAATTTTCAGGGAACTTGACTT 57.288 30.769 0.00 0.00 40.21 3.01
1806 2773 9.454859 CTAATCTAATTTTCAGGGAACTTGACT 57.545 33.333 0.00 0.00 40.21 3.41
1810 2777 7.709601 ACCCTAATCTAATTTTCAGGGAACTT 58.290 34.615 11.36 0.00 44.71 2.66
1811 2778 7.285340 ACCCTAATCTAATTTTCAGGGAACT 57.715 36.000 11.36 0.00 44.71 3.01
1812 2779 8.900781 GTTACCCTAATCTAATTTTCAGGGAAC 58.099 37.037 11.36 7.50 44.71 3.62
1813 2780 8.842764 AGTTACCCTAATCTAATTTTCAGGGAA 58.157 33.333 11.36 0.00 44.71 3.97
1814 2781 8.401955 AGTTACCCTAATCTAATTTTCAGGGA 57.598 34.615 11.36 0.00 44.71 4.20
1815 2782 7.720074 GGAGTTACCCTAATCTAATTTTCAGGG 59.280 40.741 2.89 2.89 46.85 4.45
1817 2784 9.853177 ATGGAGTTACCCTAATCTAATTTTCAG 57.147 33.333 0.00 0.00 38.00 3.02
1834 2801 6.091849 GTCCGAGAAGGTAAAAATGGAGTTAC 59.908 42.308 0.00 0.00 41.99 2.50
1835 2802 6.168389 GTCCGAGAAGGTAAAAATGGAGTTA 58.832 40.000 0.00 0.00 41.99 2.24
1837 2804 4.565028 GGTCCGAGAAGGTAAAAATGGAGT 60.565 45.833 0.00 0.00 41.99 3.85
1838 2805 3.939592 GGTCCGAGAAGGTAAAAATGGAG 59.060 47.826 0.00 0.00 41.99 3.86
1839 2806 3.328343 TGGTCCGAGAAGGTAAAAATGGA 59.672 43.478 0.00 0.00 41.99 3.41
1840 2807 3.439129 GTGGTCCGAGAAGGTAAAAATGG 59.561 47.826 0.00 0.00 41.99 3.16
1842 2809 3.682696 GGTGGTCCGAGAAGGTAAAAAT 58.317 45.455 0.00 0.00 41.99 1.82
1843 2810 3.130280 GGTGGTCCGAGAAGGTAAAAA 57.870 47.619 0.00 0.00 41.99 1.94
1844 2811 2.845363 GGTGGTCCGAGAAGGTAAAA 57.155 50.000 0.00 0.00 41.99 1.52
1865 2832 1.215647 GTACTGGGAGAGCGTGTGG 59.784 63.158 0.00 0.00 0.00 4.17
1866 2833 1.215647 GGTACTGGGAGAGCGTGTG 59.784 63.158 0.00 0.00 0.00 3.82
1867 2834 1.982938 GGGTACTGGGAGAGCGTGT 60.983 63.158 0.00 0.00 0.00 4.49
1869 2836 1.982938 GTGGGTACTGGGAGAGCGT 60.983 63.158 0.00 0.00 0.00 5.07
1870 2837 2.722201 GGTGGGTACTGGGAGAGCG 61.722 68.421 0.00 0.00 0.00 5.03
1872 2839 3.617368 CGGTGGGTACTGGGAGAG 58.383 66.667 0.00 0.00 0.00 3.20
1885 2852 1.994779 GTGTCGTATTAACCACCGGTG 59.005 52.381 28.26 28.26 35.34 4.94
1886 2853 1.617850 TGTGTCGTATTAACCACCGGT 59.382 47.619 0.00 0.00 37.65 5.28
1889 2856 2.414138 GTGCTGTGTCGTATTAACCACC 59.586 50.000 0.00 0.00 0.00 4.61
1890 2857 3.061322 TGTGCTGTGTCGTATTAACCAC 58.939 45.455 0.00 0.00 0.00 4.16
1891 2858 3.388345 TGTGCTGTGTCGTATTAACCA 57.612 42.857 0.00 0.00 0.00 3.67
1892 2859 3.744426 ACTTGTGCTGTGTCGTATTAACC 59.256 43.478 0.00 0.00 0.00 2.85
1894 2861 7.661127 AAATACTTGTGCTGTGTCGTATTAA 57.339 32.000 0.00 0.00 30.11 1.40
1895 2862 7.661127 AAAATACTTGTGCTGTGTCGTATTA 57.339 32.000 0.00 0.00 30.11 0.98
1897 2864 7.333423 ACATAAAATACTTGTGCTGTGTCGTAT 59.667 33.333 0.00 0.00 0.00 3.06
1898 2865 6.647481 ACATAAAATACTTGTGCTGTGTCGTA 59.353 34.615 0.00 0.00 0.00 3.43
1899 2866 5.468746 ACATAAAATACTTGTGCTGTGTCGT 59.531 36.000 0.00 0.00 0.00 4.34
1901 2868 9.329913 CTTAACATAAAATACTTGTGCTGTGTC 57.670 33.333 0.00 0.00 0.00 3.67
1903 2870 9.117145 CACTTAACATAAAATACTTGTGCTGTG 57.883 33.333 0.00 0.00 0.00 3.66
1904 2871 8.296713 CCACTTAACATAAAATACTTGTGCTGT 58.703 33.333 0.00 0.00 0.00 4.40
1926 2893 8.532186 TGATATGCCAAATAAATGTTACCACT 57.468 30.769 0.00 0.00 0.00 4.00
1927 2894 9.762933 ATTGATATGCCAAATAAATGTTACCAC 57.237 29.630 0.00 0.00 0.00 4.16
1929 2896 9.423061 GGATTGATATGCCAAATAAATGTTACC 57.577 33.333 0.00 0.00 0.00 2.85
1930 2897 9.128107 CGGATTGATATGCCAAATAAATGTTAC 57.872 33.333 0.00 0.00 0.00 2.50
1932 2899 7.725251 ACGGATTGATATGCCAAATAAATGTT 58.275 30.769 0.00 0.00 0.00 2.71
1933 2900 7.231317 AGACGGATTGATATGCCAAATAAATGT 59.769 33.333 0.00 0.00 0.00 2.71
1935 2902 7.765695 AGACGGATTGATATGCCAAATAAAT 57.234 32.000 0.00 0.00 0.00 1.40
1936 2903 8.862325 ATAGACGGATTGATATGCCAAATAAA 57.138 30.769 0.00 0.00 0.00 1.40
1937 2904 8.862325 AATAGACGGATTGATATGCCAAATAA 57.138 30.769 0.00 0.00 0.00 1.40
1939 2906 6.375455 GGAATAGACGGATTGATATGCCAAAT 59.625 38.462 0.00 0.00 0.00 2.32
1940 2907 5.705441 GGAATAGACGGATTGATATGCCAAA 59.295 40.000 0.00 0.00 0.00 3.28
1941 2908 5.221823 TGGAATAGACGGATTGATATGCCAA 60.222 40.000 0.00 0.00 31.56 4.52
1942 2909 4.285775 TGGAATAGACGGATTGATATGCCA 59.714 41.667 0.00 0.00 31.96 4.92
1943 2910 4.832248 TGGAATAGACGGATTGATATGCC 58.168 43.478 0.00 0.00 0.00 4.40
1944 2911 6.237942 CGAATGGAATAGACGGATTGATATGC 60.238 42.308 0.00 0.00 0.00 3.14
1945 2912 7.035612 TCGAATGGAATAGACGGATTGATATG 58.964 38.462 0.00 0.00 0.00 1.78
1946 2913 7.170393 TCGAATGGAATAGACGGATTGATAT 57.830 36.000 0.00 0.00 0.00 1.63
1947 2914 6.584185 TCGAATGGAATAGACGGATTGATA 57.416 37.500 0.00 0.00 0.00 2.15
1948 2915 5.468540 TCGAATGGAATAGACGGATTGAT 57.531 39.130 0.00 0.00 0.00 2.57
1950 2917 4.324669 CGATCGAATGGAATAGACGGATTG 59.675 45.833 10.26 0.00 0.00 2.67
1951 2918 4.217767 TCGATCGAATGGAATAGACGGATT 59.782 41.667 16.99 0.00 0.00 3.01
1952 2919 3.756963 TCGATCGAATGGAATAGACGGAT 59.243 43.478 16.99 0.00 0.00 4.18
1953 2920 3.058432 GTCGATCGAATGGAATAGACGGA 60.058 47.826 21.31 0.00 0.00 4.69
1954 2921 3.235195 GTCGATCGAATGGAATAGACGG 58.765 50.000 21.31 0.00 0.00 4.79
1955 2922 3.235195 GGTCGATCGAATGGAATAGACG 58.765 50.000 21.31 0.00 31.42 4.18
1956 2923 3.005472 TGGGTCGATCGAATGGAATAGAC 59.995 47.826 21.31 3.42 0.00 2.59
1958 2925 3.660501 TGGGTCGATCGAATGGAATAG 57.339 47.619 21.31 0.00 0.00 1.73
1960 2927 2.561569 GTTGGGTCGATCGAATGGAAT 58.438 47.619 21.31 0.00 0.00 3.01
1961 2928 1.406341 GGTTGGGTCGATCGAATGGAA 60.406 52.381 21.31 7.65 0.00 3.53
1963 2930 0.178068 AGGTTGGGTCGATCGAATGG 59.822 55.000 21.31 0.00 0.00 3.16
1964 2931 2.743938 CTAGGTTGGGTCGATCGAATG 58.256 52.381 21.31 0.00 0.00 2.67
1965 2932 1.068741 GCTAGGTTGGGTCGATCGAAT 59.931 52.381 21.31 2.78 0.00 3.34
1966 2933 0.458669 GCTAGGTTGGGTCGATCGAA 59.541 55.000 21.31 0.67 0.00 3.71
1967 2934 1.389609 GGCTAGGTTGGGTCGATCGA 61.390 60.000 15.15 15.15 0.00 3.59
1969 2936 1.335132 TGGGCTAGGTTGGGTCGATC 61.335 60.000 0.00 0.00 0.00 3.69
1970 2937 0.694444 ATGGGCTAGGTTGGGTCGAT 60.694 55.000 0.00 0.00 0.00 3.59
1971 2938 0.031917 TATGGGCTAGGTTGGGTCGA 60.032 55.000 0.00 0.00 0.00 4.20
1972 2939 0.393077 CTATGGGCTAGGTTGGGTCG 59.607 60.000 0.00 0.00 0.00 4.79
1974 2941 2.127708 CTTCTATGGGCTAGGTTGGGT 58.872 52.381 0.00 0.00 0.00 4.51
1975 2942 2.104963 GTCTTCTATGGGCTAGGTTGGG 59.895 54.545 0.00 0.00 0.00 4.12
1976 2943 2.771943 TGTCTTCTATGGGCTAGGTTGG 59.228 50.000 0.00 0.00 0.00 3.77
1979 2946 5.716979 TCTATTGTCTTCTATGGGCTAGGT 58.283 41.667 0.00 0.00 0.00 3.08
1981 2948 8.465999 CACTATCTATTGTCTTCTATGGGCTAG 58.534 40.741 0.00 0.00 0.00 3.42
1983 2950 6.784969 ACACTATCTATTGTCTTCTATGGGCT 59.215 38.462 0.00 0.00 0.00 5.19
1984 2951 6.998802 ACACTATCTATTGTCTTCTATGGGC 58.001 40.000 0.00 0.00 0.00 5.36
1985 2952 8.524487 GGTACACTATCTATTGTCTTCTATGGG 58.476 40.741 0.00 0.00 0.00 4.00
1986 2953 9.303116 AGGTACACTATCTATTGTCTTCTATGG 57.697 37.037 0.00 0.00 0.00 2.74
1988 2955 9.523168 GGAGGTACACTATCTATTGTCTTCTAT 57.477 37.037 0.00 0.00 0.00 1.98
1989 2956 8.725256 AGGAGGTACACTATCTATTGTCTTCTA 58.275 37.037 0.00 0.00 0.00 2.10
1990 2957 7.504238 CAGGAGGTACACTATCTATTGTCTTCT 59.496 40.741 0.00 0.00 0.00 2.85
1991 2958 7.502895 TCAGGAGGTACACTATCTATTGTCTTC 59.497 40.741 0.00 0.00 0.00 2.87
1992 2959 7.355101 TCAGGAGGTACACTATCTATTGTCTT 58.645 38.462 0.00 0.00 0.00 3.01
1993 2960 6.912426 TCAGGAGGTACACTATCTATTGTCT 58.088 40.000 0.00 0.00 0.00 3.41
1994 2961 7.231722 ACATCAGGAGGTACACTATCTATTGTC 59.768 40.741 0.00 0.00 0.00 3.18
1995 2962 7.014711 CACATCAGGAGGTACACTATCTATTGT 59.985 40.741 0.00 0.00 0.00 2.71
1996 2963 7.374272 CACATCAGGAGGTACACTATCTATTG 58.626 42.308 0.00 0.00 0.00 1.90
1997 2964 6.495181 CCACATCAGGAGGTACACTATCTATT 59.505 42.308 0.00 0.00 0.00 1.73
1998 2965 6.013379 CCACATCAGGAGGTACACTATCTAT 58.987 44.000 0.00 0.00 0.00 1.98
1999 2966 5.103643 ACCACATCAGGAGGTACACTATCTA 60.104 44.000 0.00 0.00 32.92 1.98
2000 2967 4.219115 CCACATCAGGAGGTACACTATCT 58.781 47.826 0.00 0.00 0.00 1.98
2001 2968 3.961408 ACCACATCAGGAGGTACACTATC 59.039 47.826 0.00 0.00 32.92 2.08
2002 2969 3.961408 GACCACATCAGGAGGTACACTAT 59.039 47.826 0.00 0.00 35.36 2.12
2003 2970 3.245479 TGACCACATCAGGAGGTACACTA 60.245 47.826 0.00 0.00 35.36 2.74
2004 2971 2.180276 GACCACATCAGGAGGTACACT 58.820 52.381 0.00 0.00 35.36 3.55
2005 2972 1.899814 TGACCACATCAGGAGGTACAC 59.100 52.381 0.00 0.00 35.36 2.90
2006 2973 1.899814 GTGACCACATCAGGAGGTACA 59.100 52.381 0.00 0.00 38.28 2.90
2007 2974 2.180276 AGTGACCACATCAGGAGGTAC 58.820 52.381 2.78 0.00 38.28 3.34
2008 2975 2.623418 AGTGACCACATCAGGAGGTA 57.377 50.000 2.78 0.00 38.28 3.08
2009 2976 1.734655 AAGTGACCACATCAGGAGGT 58.265 50.000 2.78 0.00 38.28 3.85
2010 2977 2.304180 AGAAAGTGACCACATCAGGAGG 59.696 50.000 2.78 0.00 38.28 4.30
2011 2978 3.692257 AGAAAGTGACCACATCAGGAG 57.308 47.619 2.78 0.00 38.28 3.69
2012 2979 3.244561 GGAAGAAAGTGACCACATCAGGA 60.245 47.826 2.78 0.00 38.28 3.86
2013 2980 3.077359 GGAAGAAAGTGACCACATCAGG 58.923 50.000 2.78 0.00 38.28 3.86
2014 2981 4.013267 AGGAAGAAAGTGACCACATCAG 57.987 45.455 2.78 0.00 38.28 2.90
2015 2982 4.141505 TGAAGGAAGAAAGTGACCACATCA 60.142 41.667 2.78 0.00 33.79 3.07
2016 2983 4.389374 TGAAGGAAGAAAGTGACCACATC 58.611 43.478 2.78 1.06 0.00 3.06
2017 2984 4.437682 TGAAGGAAGAAAGTGACCACAT 57.562 40.909 2.78 0.00 0.00 3.21
2018 2985 3.924114 TGAAGGAAGAAAGTGACCACA 57.076 42.857 2.78 0.00 0.00 4.17
2019 2986 6.877611 TTTATGAAGGAAGAAAGTGACCAC 57.122 37.500 0.00 0.00 0.00 4.16
2020 2987 7.889873 TTTTTATGAAGGAAGAAAGTGACCA 57.110 32.000 0.00 0.00 0.00 4.02
2041 3008 3.636300 TGCTTCAGCTATGGTGTGTTTTT 59.364 39.130 0.00 0.00 42.66 1.94
2042 3009 3.221771 TGCTTCAGCTATGGTGTGTTTT 58.778 40.909 0.00 0.00 42.66 2.43
2043 3010 2.862541 TGCTTCAGCTATGGTGTGTTT 58.137 42.857 0.00 0.00 42.66 2.83
2044 3011 2.566833 TGCTTCAGCTATGGTGTGTT 57.433 45.000 0.00 0.00 42.66 3.32
2045 3012 2.566833 TTGCTTCAGCTATGGTGTGT 57.433 45.000 0.00 0.00 42.66 3.72
2046 3013 3.366679 CCTTTTGCTTCAGCTATGGTGTG 60.367 47.826 0.00 0.00 42.66 3.82
2047 3014 2.821969 CCTTTTGCTTCAGCTATGGTGT 59.178 45.455 0.00 0.00 42.66 4.16
2048 3015 2.165030 CCCTTTTGCTTCAGCTATGGTG 59.835 50.000 0.00 0.00 42.66 4.17
2049 3016 2.450476 CCCTTTTGCTTCAGCTATGGT 58.550 47.619 0.00 0.00 42.66 3.55
2050 3017 1.753073 CCCCTTTTGCTTCAGCTATGG 59.247 52.381 0.00 0.89 42.66 2.74
2051 3018 1.753073 CCCCCTTTTGCTTCAGCTATG 59.247 52.381 0.00 0.00 42.66 2.23
2052 3019 1.961919 GCCCCCTTTTGCTTCAGCTAT 60.962 52.381 0.00 0.00 42.66 2.97
2053 3020 0.611896 GCCCCCTTTTGCTTCAGCTA 60.612 55.000 0.00 0.00 42.66 3.32
2054 3021 1.910276 GCCCCCTTTTGCTTCAGCT 60.910 57.895 0.00 0.00 42.66 4.24
2055 3022 1.757423 TTGCCCCCTTTTGCTTCAGC 61.757 55.000 0.00 0.00 42.50 4.26
2056 3023 0.978907 ATTGCCCCCTTTTGCTTCAG 59.021 50.000 0.00 0.00 0.00 3.02
2057 3024 0.686224 CATTGCCCCCTTTTGCTTCA 59.314 50.000 0.00 0.00 0.00 3.02
2058 3025 0.674581 GCATTGCCCCCTTTTGCTTC 60.675 55.000 0.00 0.00 0.00 3.86
2059 3026 1.376086 GCATTGCCCCCTTTTGCTT 59.624 52.632 0.00 0.00 0.00 3.91
2060 3027 2.595884 GGCATTGCCCCCTTTTGCT 61.596 57.895 17.28 0.00 44.06 3.91
2061 3028 2.046023 GGCATTGCCCCCTTTTGC 60.046 61.111 17.28 0.00 44.06 3.68
2071 3038 3.855689 ATACTTGTCAACAGGCATTGC 57.144 42.857 0.00 0.00 0.00 3.56
2072 3039 5.375417 TGAATACTTGTCAACAGGCATTG 57.625 39.130 0.00 0.00 0.00 2.82
2073 3040 5.711506 TCATGAATACTTGTCAACAGGCATT 59.288 36.000 0.00 0.00 0.00 3.56
2074 3041 5.255687 TCATGAATACTTGTCAACAGGCAT 58.744 37.500 0.00 0.00 0.00 4.40
2075 3042 4.650734 TCATGAATACTTGTCAACAGGCA 58.349 39.130 0.00 0.00 0.00 4.75
2076 3043 4.937620 TCTCATGAATACTTGTCAACAGGC 59.062 41.667 0.00 0.00 0.00 4.85
2077 3044 5.064452 GCTCTCATGAATACTTGTCAACAGG 59.936 44.000 0.00 0.00 0.00 4.00
2078 3045 5.873712 AGCTCTCATGAATACTTGTCAACAG 59.126 40.000 0.00 0.00 0.00 3.16
2079 3046 5.798132 AGCTCTCATGAATACTTGTCAACA 58.202 37.500 0.00 0.00 0.00 3.33
2080 3047 6.105333 AGAGCTCTCATGAATACTTGTCAAC 58.895 40.000 11.45 0.00 0.00 3.18
2081 3048 6.291648 AGAGCTCTCATGAATACTTGTCAA 57.708 37.500 11.45 0.00 0.00 3.18
2082 3049 5.929058 AGAGCTCTCATGAATACTTGTCA 57.071 39.130 11.45 0.00 0.00 3.58
2083 3050 8.194104 TCTTTAGAGCTCTCATGAATACTTGTC 58.806 37.037 22.17 0.00 0.00 3.18
2084 3051 8.072321 TCTTTAGAGCTCTCATGAATACTTGT 57.928 34.615 22.17 0.00 0.00 3.16
2085 3052 9.545105 AATCTTTAGAGCTCTCATGAATACTTG 57.455 33.333 22.17 0.10 0.00 3.16
2090 3057 8.189460 GCAAAAATCTTTAGAGCTCTCATGAAT 58.811 33.333 22.17 7.53 0.00 2.57
2091 3058 7.392673 AGCAAAAATCTTTAGAGCTCTCATGAA 59.607 33.333 22.17 5.97 0.00 2.57
2092 3059 6.883217 AGCAAAAATCTTTAGAGCTCTCATGA 59.117 34.615 22.17 17.22 0.00 3.07
2093 3060 7.086230 AGCAAAAATCTTTAGAGCTCTCATG 57.914 36.000 22.17 12.01 0.00 3.07
2094 3061 6.036953 CGAGCAAAAATCTTTAGAGCTCTCAT 59.963 38.462 22.17 5.54 43.43 2.90
2095 3062 5.349817 CGAGCAAAAATCTTTAGAGCTCTCA 59.650 40.000 22.17 6.49 43.43 3.27
2096 3063 5.726413 GCGAGCAAAAATCTTTAGAGCTCTC 60.726 44.000 22.17 0.50 43.43 3.20
2097 3064 4.094146 GCGAGCAAAAATCTTTAGAGCTCT 59.906 41.667 22.17 22.17 43.43 4.09
2098 3065 4.094146 AGCGAGCAAAAATCTTTAGAGCTC 59.906 41.667 5.27 5.27 42.50 4.09
2099 3066 4.006319 AGCGAGCAAAAATCTTTAGAGCT 58.994 39.130 0.00 0.00 0.00 4.09
2100 3067 4.348198 AGCGAGCAAAAATCTTTAGAGC 57.652 40.909 0.00 0.00 0.00 4.09
2119 3086 3.871594 TCATTAAGCTTCTTCCGCTTAGC 59.128 43.478 0.00 0.00 46.84 3.09
2120 3087 5.220681 GGTTCATTAAGCTTCTTCCGCTTAG 60.221 44.000 0.00 0.00 46.84 2.18
2121 3088 4.634443 GGTTCATTAAGCTTCTTCCGCTTA 59.366 41.667 0.00 0.74 45.21 3.09
2123 3090 3.010420 GGTTCATTAAGCTTCTTCCGCT 58.990 45.455 0.00 0.00 39.94 5.52
2124 3091 2.223044 CGGTTCATTAAGCTTCTTCCGC 60.223 50.000 0.00 0.00 0.00 5.54
2125 3092 3.259064 TCGGTTCATTAAGCTTCTTCCG 58.741 45.455 0.00 10.28 37.29 4.30
2126 3093 3.064134 GCTCGGTTCATTAAGCTTCTTCC 59.936 47.826 0.00 0.00 0.00 3.46
2127 3094 3.064134 GGCTCGGTTCATTAAGCTTCTTC 59.936 47.826 0.00 0.00 35.12 2.87
2128 3095 3.010420 GGCTCGGTTCATTAAGCTTCTT 58.990 45.455 0.00 0.00 35.12 2.52
2129 3096 2.237392 AGGCTCGGTTCATTAAGCTTCT 59.763 45.455 0.00 0.00 35.12 2.85
2130 3097 2.633488 AGGCTCGGTTCATTAAGCTTC 58.367 47.619 0.00 0.00 35.12 3.86
2131 3098 2.789409 AGGCTCGGTTCATTAAGCTT 57.211 45.000 3.48 3.48 35.12 3.74
2132 3099 2.789409 AAGGCTCGGTTCATTAAGCT 57.211 45.000 0.00 0.00 35.12 3.74
2133 3100 3.687698 TGTTAAGGCTCGGTTCATTAAGC 59.312 43.478 0.00 0.00 0.00 3.09
2134 3101 5.673818 GCTTGTTAAGGCTCGGTTCATTAAG 60.674 44.000 0.00 0.00 0.00 1.85
2135 3102 4.155280 GCTTGTTAAGGCTCGGTTCATTAA 59.845 41.667 0.00 0.00 0.00 1.40
2136 3103 3.687698 GCTTGTTAAGGCTCGGTTCATTA 59.312 43.478 0.00 0.00 0.00 1.90
2137 3104 2.488153 GCTTGTTAAGGCTCGGTTCATT 59.512 45.455 0.00 0.00 0.00 2.57
2138 3105 2.084546 GCTTGTTAAGGCTCGGTTCAT 58.915 47.619 0.00 0.00 0.00 2.57
2139 3106 1.071699 AGCTTGTTAAGGCTCGGTTCA 59.928 47.619 0.00 0.00 32.98 3.18
2140 3107 1.809684 AGCTTGTTAAGGCTCGGTTC 58.190 50.000 0.00 0.00 32.98 3.62
2141 3108 3.270877 CATAGCTTGTTAAGGCTCGGTT 58.729 45.455 0.00 0.00 39.65 4.44
2142 3109 2.906354 CATAGCTTGTTAAGGCTCGGT 58.094 47.619 0.00 0.00 39.65 4.69
2143 3110 1.599542 GCATAGCTTGTTAAGGCTCGG 59.400 52.381 0.00 0.00 39.65 4.63
2144 3111 2.279741 TGCATAGCTTGTTAAGGCTCG 58.720 47.619 0.00 0.00 39.65 5.03
2145 3112 4.133078 AGATGCATAGCTTGTTAAGGCTC 58.867 43.478 0.00 0.00 39.65 4.70
2146 3113 4.162040 AGATGCATAGCTTGTTAAGGCT 57.838 40.909 0.00 0.00 41.92 4.58
2147 3114 4.604976 CAAGATGCATAGCTTGTTAAGGC 58.395 43.478 16.34 0.00 43.50 4.35
2155 3122 7.201911 GGGGTAAATTAACAAGATGCATAGCTT 60.202 37.037 0.00 0.00 31.51 3.74
2156 3123 6.265422 GGGGTAAATTAACAAGATGCATAGCT 59.735 38.462 0.00 0.00 0.00 3.32
2157 3124 6.447162 GGGGTAAATTAACAAGATGCATAGC 58.553 40.000 0.00 0.00 0.00 2.97
2158 3125 6.668323 CGGGGTAAATTAACAAGATGCATAG 58.332 40.000 0.00 0.00 0.00 2.23
2159 3126 5.009210 GCGGGGTAAATTAACAAGATGCATA 59.991 40.000 0.00 0.00 0.00 3.14
2160 3127 4.202111 GCGGGGTAAATTAACAAGATGCAT 60.202 41.667 0.00 0.00 0.00 3.96
2161 3128 3.129638 GCGGGGTAAATTAACAAGATGCA 59.870 43.478 0.00 0.00 0.00 3.96
2162 3129 3.490249 GGCGGGGTAAATTAACAAGATGC 60.490 47.826 0.00 0.00 0.00 3.91
2163 3130 3.067601 GGGCGGGGTAAATTAACAAGATG 59.932 47.826 0.00 0.00 0.00 2.90
2164 3131 3.293337 GGGCGGGGTAAATTAACAAGAT 58.707 45.455 0.00 0.00 0.00 2.40
2165 3132 2.621147 GGGGCGGGGTAAATTAACAAGA 60.621 50.000 0.00 0.00 0.00 3.02
2166 3133 1.752498 GGGGCGGGGTAAATTAACAAG 59.248 52.381 0.00 0.00 0.00 3.16
2167 3134 1.619160 GGGGGCGGGGTAAATTAACAA 60.619 52.381 0.00 0.00 0.00 2.83
2168 3135 0.033306 GGGGGCGGGGTAAATTAACA 60.033 55.000 0.00 0.00 0.00 2.41
2169 3136 2.811307 GGGGGCGGGGTAAATTAAC 58.189 57.895 0.00 0.00 0.00 2.01
2184 3151 2.588877 CGCTATGTCGCAAGGGGG 60.589 66.667 0.00 0.00 38.47 5.40
2185 3152 2.588877 CCGCTATGTCGCAAGGGG 60.589 66.667 0.00 0.00 39.18 4.79
2186 3153 1.592669 CTCCGCTATGTCGCAAGGG 60.593 63.158 0.00 0.00 38.47 3.95
2193 3160 0.387878 CATCTCGCCTCCGCTATGTC 60.388 60.000 0.00 0.00 0.00 3.06
2195 3162 1.735920 GCATCTCGCCTCCGCTATG 60.736 63.158 0.00 0.00 32.77 2.23
2200 3167 4.899239 GGGTGCATCTCGCCTCCG 62.899 72.222 0.00 0.00 44.77 4.63
2201 3168 3.474570 AGGGTGCATCTCGCCTCC 61.475 66.667 0.00 0.00 44.77 4.30
2207 3174 1.198713 TCTTCCTCAGGGTGCATCTC 58.801 55.000 0.00 0.00 0.00 2.75
2208 3175 1.890552 ATCTTCCTCAGGGTGCATCT 58.109 50.000 0.00 0.00 0.00 2.90
2209 3176 2.038295 CCTATCTTCCTCAGGGTGCATC 59.962 54.545 0.00 0.00 0.00 3.91
2210 3177 2.053244 CCTATCTTCCTCAGGGTGCAT 58.947 52.381 0.00 0.00 0.00 3.96
2211 3178 1.273838 ACCTATCTTCCTCAGGGTGCA 60.274 52.381 0.00 0.00 33.48 4.57
2212 3179 1.139853 CACCTATCTTCCTCAGGGTGC 59.860 57.143 0.00 0.00 37.89 5.01
2213 3180 2.697751 CTCACCTATCTTCCTCAGGGTG 59.302 54.545 0.00 0.00 43.67 4.61
2214 3181 2.316372 ACTCACCTATCTTCCTCAGGGT 59.684 50.000 0.00 0.00 33.48 4.34
2215 3182 2.697751 CACTCACCTATCTTCCTCAGGG 59.302 54.545 0.00 0.00 33.48 4.45
2216 3183 3.131933 CACACTCACCTATCTTCCTCAGG 59.868 52.174 0.00 0.00 35.45 3.86
2218 3185 3.099905 CCACACTCACCTATCTTCCTCA 58.900 50.000 0.00 0.00 0.00 3.86
2220 3187 2.834549 CACCACACTCACCTATCTTCCT 59.165 50.000 0.00 0.00 0.00 3.36
2222 3189 2.678190 GCCACCACACTCACCTATCTTC 60.678 54.545 0.00 0.00 0.00 2.87
2224 3191 0.905357 GCCACCACACTCACCTATCT 59.095 55.000 0.00 0.00 0.00 1.98
2225 3192 0.460284 CGCCACCACACTCACCTATC 60.460 60.000 0.00 0.00 0.00 2.08
2226 3193 1.596934 CGCCACCACACTCACCTAT 59.403 57.895 0.00 0.00 0.00 2.57
2227 3194 2.579657 CCGCCACCACACTCACCTA 61.580 63.158 0.00 0.00 0.00 3.08
2228 3195 3.941188 CCGCCACCACACTCACCT 61.941 66.667 0.00 0.00 0.00 4.00
2245 3346 0.458543 ACACATCATCCTGTCGTCGC 60.459 55.000 0.00 0.00 0.00 5.19
2246 3347 1.271876 CACACATCATCCTGTCGTCG 58.728 55.000 0.00 0.00 0.00 5.12
2247 3348 1.066858 ACCACACATCATCCTGTCGTC 60.067 52.381 0.00 0.00 0.00 4.20
2248 3349 0.976641 ACCACACATCATCCTGTCGT 59.023 50.000 0.00 0.00 0.00 4.34
2249 3350 2.099141 AACCACACATCATCCTGTCG 57.901 50.000 0.00 0.00 0.00 4.35
2251 3352 7.224297 GGTATATAAACCACACATCATCCTGT 58.776 38.462 0.00 0.00 39.50 4.00
2252 3353 6.655003 GGGTATATAAACCACACATCATCCTG 59.345 42.308 0.00 0.00 41.67 3.86
2253 3354 6.520061 CGGGTATATAAACCACACATCATCCT 60.520 42.308 5.77 0.00 41.67 3.24
2254 3355 5.642063 CGGGTATATAAACCACACATCATCC 59.358 44.000 5.77 0.00 41.67 3.51
2255 3356 5.121768 GCGGGTATATAAACCACACATCATC 59.878 44.000 5.77 0.00 41.67 2.92
2256 3357 5.001232 GCGGGTATATAAACCACACATCAT 58.999 41.667 5.77 0.00 41.67 2.45
2258 3359 3.430895 CGCGGGTATATAAACCACACATC 59.569 47.826 0.00 0.00 41.67 3.06
2259 3360 3.069872 TCGCGGGTATATAAACCACACAT 59.930 43.478 6.13 0.00 41.67 3.21
2260 3361 2.429971 TCGCGGGTATATAAACCACACA 59.570 45.455 6.13 0.00 41.67 3.72
2261 3362 3.054878 CTCGCGGGTATATAAACCACAC 58.945 50.000 6.13 0.00 41.67 3.82
2262 3363 2.694628 ACTCGCGGGTATATAAACCACA 59.305 45.455 11.59 0.00 41.67 4.17
2263 3364 3.054878 CACTCGCGGGTATATAAACCAC 58.945 50.000 13.40 0.00 41.67 4.16
2266 3367 2.064014 GCCACTCGCGGGTATATAAAC 58.936 52.381 13.40 0.00 0.00 2.01
2268 3369 1.000060 GTGCCACTCGCGGGTATATAA 60.000 52.381 13.40 0.00 42.08 0.98
2270 3371 1.366366 GTGCCACTCGCGGGTATAT 59.634 57.895 13.40 0.00 42.08 0.86
2271 3372 2.788640 GGTGCCACTCGCGGGTATA 61.789 63.158 13.40 0.00 42.08 1.47
2278 3379 4.767255 CCAGAGGGTGCCACTCGC 62.767 72.222 0.00 0.00 39.90 5.03
2279 3380 4.767255 GCCAGAGGGTGCCACTCG 62.767 72.222 0.00 0.00 39.90 4.18
2622 3723 3.056328 GGCACCCCGCTTCTTCAC 61.056 66.667 0.00 0.00 41.91 3.18
2623 3724 3.551496 CTGGCACCCCGCTTCTTCA 62.551 63.158 0.00 0.00 41.91 3.02
2624 3725 2.747855 CTGGCACCCCGCTTCTTC 60.748 66.667 0.00 0.00 41.91 2.87
2625 3726 2.351924 TTTCTGGCACCCCGCTTCTT 62.352 55.000 0.00 0.00 41.91 2.52
2626 3727 2.351924 TTTTCTGGCACCCCGCTTCT 62.352 55.000 0.00 0.00 41.91 2.85
2627 3728 1.460273 TTTTTCTGGCACCCCGCTTC 61.460 55.000 0.00 0.00 41.91 3.86
2628 3729 1.456705 TTTTTCTGGCACCCCGCTT 60.457 52.632 0.00 0.00 41.91 4.68
2629 3730 2.197324 TTTTTCTGGCACCCCGCT 59.803 55.556 0.00 0.00 41.91 5.52
2643 3744 4.008074 TGAGATCGCCACTTCTCTTTTT 57.992 40.909 0.00 0.00 39.30 1.94
2644 3745 3.685139 TGAGATCGCCACTTCTCTTTT 57.315 42.857 0.00 0.00 39.30 2.27
2645 3746 3.902881 ATGAGATCGCCACTTCTCTTT 57.097 42.857 0.00 0.00 39.30 2.52
2646 3747 3.902881 AATGAGATCGCCACTTCTCTT 57.097 42.857 0.00 0.00 39.30 2.85
2647 3748 4.586421 TCATAATGAGATCGCCACTTCTCT 59.414 41.667 0.00 0.00 39.30 3.10
2648 3749 4.876125 TCATAATGAGATCGCCACTTCTC 58.124 43.478 0.00 0.00 39.07 2.87
2649 3750 4.944619 TCATAATGAGATCGCCACTTCT 57.055 40.909 0.00 0.00 0.00 2.85
2661 3762 2.983296 ACCTCCTCCCCTCATAATGAG 58.017 52.381 0.00 0.00 43.91 2.90
2662 3763 4.785173 ATACCTCCTCCCCTCATAATGA 57.215 45.455 0.00 0.00 0.00 2.57


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.