Multiple sequence alignment - TraesCS2D01G002300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2D01G002300 chr2D 100.000 4259 0 0 1 4259 1962310 1958052 0.000000e+00 7866.0
1 TraesCS2D01G002300 chr2A 93.269 3209 141 29 837 4011 1860639 1857472 0.000000e+00 4660.0
2 TraesCS2D01G002300 chr2A 89.881 336 27 6 174 505 1862808 1862476 3.940000e-115 425.0
3 TraesCS2D01G002300 chr2A 92.000 200 12 3 603 798 1862320 1862121 1.170000e-70 278.0
4 TraesCS2D01G002300 chr2A 74.840 469 95 11 1817 2281 12313906 12314355 1.560000e-44 191.0
5 TraesCS2D01G002300 chr2A 100.000 29 0 0 3348 3376 1857490 1857462 2.000000e-03 54.7
6 TraesCS2D01G002300 chr2B 92.731 3178 196 19 603 3750 19506 22678 0.000000e+00 4556.0
7 TraesCS2D01G002300 chr2B 93.350 1970 113 10 603 2556 451520 449553 0.000000e+00 2896.0
8 TraesCS2D01G002300 chr2B 90.039 1546 144 8 1654 3192 119882 118340 0.000000e+00 1993.0
9 TraesCS2D01G002300 chr2B 88.963 1495 100 31 2556 4011 448926 447458 0.000000e+00 1786.0
10 TraesCS2D01G002300 chr2B 93.239 1065 61 8 603 1662 121598 120540 0.000000e+00 1557.0
11 TraesCS2D01G002300 chr2B 93.666 521 24 8 1 515 452521 452004 0.000000e+00 771.0
12 TraesCS2D01G002300 chr2B 93.750 512 24 6 1 506 122598 122089 0.000000e+00 761.0
13 TraesCS2D01G002300 chr2B 94.562 331 15 3 1 328 18422 18752 3.800000e-140 508.0
14 TraesCS2D01G002300 chr2B 83.432 338 24 11 3677 4012 112657 112350 6.970000e-73 285.0
15 TraesCS2D01G002300 chr2B 77.412 425 89 5 1036 1455 448882 448460 3.290000e-61 246.0
16 TraesCS2D01G002300 chr2B 86.256 211 11 2 3481 3674 113749 113540 3.340000e-51 213.0
17 TraesCS2D01G002300 chr2B 84.071 226 11 8 3787 4012 22683 22883 1.210000e-45 195.0
18 TraesCS2D01G002300 chr2B 97.917 96 1 1 412 506 18881 18976 9.470000e-37 165.0
19 TraesCS2D01G002300 chr2B 94.915 59 3 0 547 605 19041 19099 4.530000e-15 93.5
20 TraesCS2D01G002300 chr2B 94.915 59 3 0 547 605 122024 121966 4.530000e-15 93.5
21 TraesCS2D01G002300 chr2B 93.220 59 4 0 547 605 451948 451890 2.110000e-13 87.9
22 TraesCS2D01G002300 chr2B 92.857 42 3 0 2 43 175422237 175422278 1.280000e-05 62.1
23 TraesCS2D01G002300 chr2B 94.737 38 2 0 4012 4049 40385 40422 4.600000e-05 60.2
24 TraesCS2D01G002300 chr2B 94.737 38 2 0 4012 4049 447427 447390 4.600000e-05 60.2
25 TraesCS2D01G002300 chr2B 100.000 29 0 0 3348 3376 447476 447448 2.000000e-03 54.7
26 TraesCS2D01G002300 chr7D 72.807 1254 294 41 1045 2281 481630 480407 2.400000e-102 383.0
27 TraesCS2D01G002300 chr7D 75.431 464 103 8 2586 3043 982265 981807 9.280000e-52 215.0
28 TraesCS2D01G002300 chr7D 73.877 601 120 26 1036 1620 982251 981672 5.580000e-49 206.0
29 TraesCS2D01G002300 chr7D 75.267 469 95 18 1037 1493 608809864 608809405 2.010000e-48 204.0
30 TraesCS2D01G002300 chr7D 73.411 598 114 32 1040 1617 480843 480271 9.410000e-42 182.0
31 TraesCS2D01G002300 chr7D 73.276 464 93 17 2586 3043 915750 915312 1.600000e-29 141.0
32 TraesCS2D01G002300 chr7D 79.208 202 35 5 1049 1245 915723 915524 2.670000e-27 134.0
33 TraesCS2D01G002300 chr7D 95.238 42 2 0 2 43 613234039 613233998 2.750000e-07 67.6
34 TraesCS2D01G002300 chr7D 100.000 29 0 0 953 981 983424 983396 2.000000e-03 54.7
35 TraesCS2D01G002300 chr7B 71.969 1270 285 57 1033 2272 697080077 697081305 1.490000e-79 307.0
36 TraesCS2D01G002300 chr4B 100.000 39 0 0 508 546 591272906 591272944 5.910000e-09 73.1
37 TraesCS2D01G002300 chr4A 97.368 38 1 0 506 543 552857835 552857872 9.880000e-07 65.8
38 TraesCS2D01G002300 chr3A 93.023 43 3 0 1 43 749182741 749182699 3.560000e-06 63.9
39 TraesCS2D01G002300 chr6B 92.857 42 3 0 2 43 43319583 43319624 1.280000e-05 62.1
40 TraesCS2D01G002300 chrUn 94.737 38 2 0 3 40 110684277 110684314 4.600000e-05 60.2
41 TraesCS2D01G002300 chr4D 100.000 32 0 0 1 32 500550085 500550116 4.600000e-05 60.2


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2D01G002300 chr2D 1958052 1962310 4258 True 7866.000000 7866 100.000000 1 4259 1 chr2D.!!$R1 4258
1 TraesCS2D01G002300 chr2A 1857462 1862808 5346 True 1354.425000 4660 93.787500 174 4011 4 chr2A.!!$R1 3837
2 TraesCS2D01G002300 chr2B 18422 22883 4461 False 1103.500000 4556 92.839200 1 4012 5 chr2B.!!$F3 4011
3 TraesCS2D01G002300 chr2B 118340 122598 4258 True 1101.125000 1993 92.985750 1 3192 4 chr2B.!!$R2 3191
4 TraesCS2D01G002300 chr2B 447390 452521 5131 True 843.114286 2896 91.621143 1 4049 7 chr2B.!!$R3 4048
5 TraesCS2D01G002300 chr2B 112350 113749 1399 True 249.000000 285 84.844000 3481 4012 2 chr2B.!!$R1 531
6 TraesCS2D01G002300 chr7D 480271 481630 1359 True 282.500000 383 73.109000 1040 2281 2 chr7D.!!$R3 1241
7 TraesCS2D01G002300 chr7B 697080077 697081305 1228 False 307.000000 307 71.969000 1033 2272 1 chr7B.!!$F1 1239

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
43 44 0.172803 GACCACCTCGCAACGACTAT 59.827 55.0 0.0 0.0 0.00 2.12 F
543 625 0.246635 TGAGTTTCTAGCTCCGCCAC 59.753 55.0 0.0 0.0 32.31 5.01 F
545 627 0.247736 AGTTTCTAGCTCCGCCACTG 59.752 55.0 0.0 0.0 0.00 3.66 F
555 661 0.321564 TCCGCCACTGATTGAACTGG 60.322 55.0 0.0 0.0 0.00 4.00 F
1876 4528 0.957362 TGTCGGCATTTGATTGCACA 59.043 45.0 0.0 0.0 44.59 4.57 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1876 4528 2.298661 CCTAGCCGGGGTCAAGGTT 61.299 63.158 2.18 0.00 0.00 3.50 R
2477 5129 2.143008 TGTTACATATACCTGCGCCG 57.857 50.000 4.18 0.00 0.00 6.46 R
2509 5197 4.884668 TTACTCTTGAATTCAGGTCGGT 57.115 40.909 16.29 14.84 0.00 4.69 R
2913 6249 2.481854 CATCGGAGAAGAGCAAGATGG 58.518 52.381 0.00 0.00 43.58 3.51 R
4233 8572 0.039256 ACATCGCATGCAACAACCAC 60.039 50.000 19.57 0.00 0.00 4.16 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
35 36 1.582968 GTTCGTAGACCACCTCGCA 59.417 57.895 0.00 0.00 34.32 5.10
43 44 0.172803 GACCACCTCGCAACGACTAT 59.827 55.000 0.00 0.00 0.00 2.12
69 70 5.152623 ACATGTACGATGCCTTATATGCT 57.847 39.130 0.00 0.00 0.00 3.79
78 79 6.490040 ACGATGCCTTATATGCTGGTAAAAAT 59.510 34.615 0.00 0.00 0.00 1.82
137 140 8.480133 AAAGATTGTAGTCGATATTCCCTACT 57.520 34.615 9.27 0.00 32.80 2.57
511 593 9.706691 TTGTACATAGAGAAAAGTCTAGTTTGG 57.293 33.333 0.00 0.00 32.80 3.28
515 597 3.653352 AGAGAAAAGTCTAGTTTGGCCCT 59.347 43.478 0.00 0.00 32.80 5.19
517 599 3.653352 AGAAAAGTCTAGTTTGGCCCTCT 59.347 43.478 0.00 0.00 29.93 3.69
519 601 2.632763 AGTCTAGTTTGGCCCTCTCT 57.367 50.000 0.00 0.00 0.00 3.10
521 603 4.273300 AGTCTAGTTTGGCCCTCTCTAT 57.727 45.455 0.00 0.00 0.00 1.98
522 604 5.405063 AGTCTAGTTTGGCCCTCTCTATA 57.595 43.478 0.00 0.00 0.00 1.31
527 609 5.559148 AGTTTGGCCCTCTCTATATTGAG 57.441 43.478 0.00 7.76 35.52 3.02
529 611 5.430089 AGTTTGGCCCTCTCTATATTGAGTT 59.570 40.000 12.92 0.00 35.68 3.01
530 612 5.975988 TTGGCCCTCTCTATATTGAGTTT 57.024 39.130 12.92 0.00 35.68 2.66
532 614 5.219739 TGGCCCTCTCTATATTGAGTTTCT 58.780 41.667 12.92 0.00 35.68 2.52
534 616 6.495181 TGGCCCTCTCTATATTGAGTTTCTAG 59.505 42.308 12.92 4.07 35.68 2.43
538 620 7.093945 CCCTCTCTATATTGAGTTTCTAGCTCC 60.094 44.444 12.92 0.00 35.68 4.70
539 621 7.361713 CCTCTCTATATTGAGTTTCTAGCTCCG 60.362 44.444 12.92 0.00 35.68 4.63
540 622 6.015027 TCTATATTGAGTTTCTAGCTCCGC 57.985 41.667 0.00 0.00 32.31 5.54
542 624 0.973632 TTGAGTTTCTAGCTCCGCCA 59.026 50.000 0.00 0.00 32.31 5.69
543 625 0.246635 TGAGTTTCTAGCTCCGCCAC 59.753 55.000 0.00 0.00 32.31 5.01
545 627 0.247736 AGTTTCTAGCTCCGCCACTG 59.752 55.000 0.00 0.00 0.00 3.66
555 661 0.321564 TCCGCCACTGATTGAACTGG 60.322 55.000 0.00 0.00 0.00 4.00
622 1138 6.913170 TGTTCAATGGAAGTAGAAAAGATGC 58.087 36.000 0.00 0.00 32.62 3.91
640 1156 5.732633 AGATGCCATAAATCTAGCTAGCTG 58.267 41.667 27.68 16.48 32.54 4.24
662 1178 2.679059 GCTGGCATAGAGAAGCAAGACA 60.679 50.000 0.00 0.00 33.53 3.41
748 1274 3.638627 TGTGCTGAGTTGAGAAAGAGAGA 59.361 43.478 0.00 0.00 0.00 3.10
768 1294 6.183347 AGAGAGCAACTGCCAAGTTAATATT 58.817 36.000 0.00 0.00 45.07 1.28
839 2808 2.362169 AGAGAAAGAGAGCGCAACTC 57.638 50.000 21.33 21.33 46.66 3.01
924 2893 4.946772 GGCTCTCTTTTTGCTAGATTTCCT 59.053 41.667 0.00 0.00 0.00 3.36
935 2904 7.994425 TTGCTAGATTTCCTTTACACATGAA 57.006 32.000 0.00 0.00 0.00 2.57
942 2911 9.178758 AGATTTCCTTTACACATGAATTAGGTC 57.821 33.333 0.00 0.00 0.00 3.85
948 2917 9.191995 CCTTTACACATGAATTAGGTCAAAAAC 57.808 33.333 0.00 0.00 0.00 2.43
950 2919 9.743057 TTTACACATGAATTAGGTCAAAAACAG 57.257 29.630 0.00 0.00 0.00 3.16
1030 3002 1.153429 GTGGATGGACGTACAGGGC 60.153 63.158 6.62 0.00 0.00 5.19
1034 3006 2.925162 GATGGACGTACAGGGCAGGC 62.925 65.000 6.62 0.00 0.00 4.85
1145 3120 2.194859 AGAGAAGCTCACCCACATCAT 58.805 47.619 0.00 0.00 32.06 2.45
1749 4400 1.568597 TCACCCGATCCAATCCCAATT 59.431 47.619 0.00 0.00 0.00 2.32
1799 4450 9.699410 TTCCTAGGAAACAAACATATGATTGAT 57.301 29.630 26.83 15.77 32.92 2.57
1876 4528 0.957362 TGTCGGCATTTGATTGCACA 59.043 45.000 0.00 0.00 44.59 4.57
2123 4775 2.898729 CCTCGTTGAGGCACATAGAT 57.101 50.000 0.00 0.00 43.29 1.98
2275 4927 4.516698 GGTGGAGATGCATATAACCAAGTG 59.483 45.833 16.89 0.00 0.00 3.16
2509 5197 9.221933 AGGTATATGTAACAACAAACATTCGAA 57.778 29.630 0.00 0.00 37.50 3.71
2514 5202 3.328237 ACAACAAACATTCGAACCGAC 57.672 42.857 0.00 0.00 34.89 4.79
2913 6249 1.359848 CGTGGACACTGGAATAGCAC 58.640 55.000 0.56 0.00 0.00 4.40
2936 6272 0.179062 CTTGCTCTTCTCCGATGGGG 60.179 60.000 0.00 0.00 37.02 4.96
3210 6547 0.810031 CGAATCTACCGGCACCCTTG 60.810 60.000 0.00 0.00 0.00 3.61
3246 6583 1.344065 ACATCCTCAACGGTACCACA 58.656 50.000 13.54 0.00 0.00 4.17
3314 6652 9.725019 ACATCATTATATATCTCCGCAAAGAAA 57.275 29.630 0.00 0.00 0.00 2.52
3358 6696 5.736951 ATATTAACTGGCTAGCAGAGGAG 57.263 43.478 18.24 6.25 0.00 3.69
3359 6697 2.828661 TAACTGGCTAGCAGAGGAGA 57.171 50.000 18.24 0.00 0.00 3.71
3360 6698 1.484038 AACTGGCTAGCAGAGGAGAG 58.516 55.000 18.24 2.76 0.00 3.20
3361 6699 0.628522 ACTGGCTAGCAGAGGAGAGA 59.371 55.000 18.24 0.00 0.00 3.10
3363 6701 2.318908 CTGGCTAGCAGAGGAGAGATT 58.681 52.381 18.24 0.00 0.00 2.40
3364 6702 3.117322 ACTGGCTAGCAGAGGAGAGATTA 60.117 47.826 18.24 0.00 0.00 1.75
3365 6703 3.894427 CTGGCTAGCAGAGGAGAGATTAA 59.106 47.826 18.24 0.00 0.00 1.40
3367 6705 3.305064 GGCTAGCAGAGGAGAGATTAACG 60.305 52.174 18.24 0.00 0.00 3.18
3368 6706 2.880963 AGCAGAGGAGAGATTAACGC 57.119 50.000 0.00 0.00 0.00 4.84
3369 6707 1.066303 AGCAGAGGAGAGATTAACGCG 59.934 52.381 3.53 3.53 0.00 6.01
3370 6708 1.866063 GCAGAGGAGAGATTAACGCGG 60.866 57.143 12.47 0.00 0.00 6.46
3401 6758 4.789807 ACATTCATGCAGCTAGGAGAAAT 58.210 39.130 0.00 0.00 0.00 2.17
3426 6785 1.173043 GGGGCACGTGATGATGAAAA 58.827 50.000 22.23 0.00 0.00 2.29
3427 6790 1.543802 GGGGCACGTGATGATGAAAAA 59.456 47.619 22.23 0.00 0.00 1.94
3502 6865 2.803492 GCTACTCTACCTCCGCCATTTG 60.803 54.545 0.00 0.00 0.00 2.32
3544 6907 3.756434 GGCTCACCTACACAGCAATAAAA 59.244 43.478 0.00 0.00 34.62 1.52
3654 7042 5.897050 TGGTTTTCTTGTAATCACGCTTTT 58.103 33.333 0.00 0.00 0.00 2.27
3662 7050 8.547967 TCTTGTAATCACGCTTTTCTTTATCT 57.452 30.769 0.00 0.00 0.00 1.98
3690 7958 3.570550 CCCCTTAATTTGAACCGTGTTCA 59.429 43.478 13.34 13.34 0.00 3.18
3750 8018 1.396653 GGCCAAGAATGATGGTCCAG 58.603 55.000 0.00 0.00 40.23 3.86
3752 8020 2.423947 GGCCAAGAATGATGGTCCAGAT 60.424 50.000 0.00 0.00 40.23 2.90
3753 8021 3.294214 GCCAAGAATGATGGTCCAGATT 58.706 45.455 0.00 0.00 40.23 2.40
3754 8022 4.464008 GCCAAGAATGATGGTCCAGATTA 58.536 43.478 0.00 0.00 40.23 1.75
3755 8023 4.889409 GCCAAGAATGATGGTCCAGATTAA 59.111 41.667 0.00 0.00 40.23 1.40
3756 8024 5.009410 GCCAAGAATGATGGTCCAGATTAAG 59.991 44.000 0.00 0.00 40.23 1.85
3757 8025 6.359804 CCAAGAATGATGGTCCAGATTAAGA 58.640 40.000 0.00 0.00 33.08 2.10
3758 8026 7.002879 CCAAGAATGATGGTCCAGATTAAGAT 58.997 38.462 0.00 0.00 33.08 2.40
3759 8027 7.040617 CCAAGAATGATGGTCCAGATTAAGATG 60.041 40.741 0.00 0.00 33.08 2.90
3760 8028 6.002704 AGAATGATGGTCCAGATTAAGATGC 58.997 40.000 0.00 0.00 0.00 3.91
3761 8029 4.776435 TGATGGTCCAGATTAAGATGCA 57.224 40.909 0.00 0.00 0.00 3.96
3762 8030 5.314718 TGATGGTCCAGATTAAGATGCAT 57.685 39.130 0.00 0.00 0.00 3.96
3763 8031 5.067954 TGATGGTCCAGATTAAGATGCATG 58.932 41.667 2.46 0.00 0.00 4.06
3764 8032 4.508551 TGGTCCAGATTAAGATGCATGT 57.491 40.909 2.46 0.00 0.00 3.21
3765 8033 5.628797 TGGTCCAGATTAAGATGCATGTA 57.371 39.130 2.46 0.00 0.00 2.29
3766 8034 5.614308 TGGTCCAGATTAAGATGCATGTAG 58.386 41.667 2.46 0.00 0.00 2.74
3767 8035 4.453819 GGTCCAGATTAAGATGCATGTAGC 59.546 45.833 2.46 0.00 45.96 3.58
3783 8051 6.810286 GCATGTAGCATTTGTTTTGTACTTG 58.190 36.000 0.00 0.00 44.79 3.16
3784 8052 6.616260 GCATGTAGCATTTGTTTTGTACTTGC 60.616 38.462 0.00 0.00 44.79 4.01
3785 8053 6.142818 TGTAGCATTTGTTTTGTACTTGCT 57.857 33.333 0.00 0.00 39.62 3.91
3849 8158 5.106442 TGCTATTTATTTCGAAGTCAGCGA 58.894 37.500 0.00 0.00 35.76 4.93
3852 8161 4.903638 TTTATTTCGAAGTCAGCGACTG 57.096 40.909 11.11 0.00 42.59 3.51
3858 8167 3.865929 AAGTCAGCGACTGGGCGTG 62.866 63.158 11.11 0.00 42.59 5.34
3878 8187 4.192317 GTGCATGTTAGGTTAGCTAGCTT 58.808 43.478 24.88 7.28 35.80 3.74
3897 8206 3.056322 GCTTCTGTTTGGCCAAGATGAAT 60.056 43.478 19.48 0.00 0.00 2.57
3898 8207 4.562143 GCTTCTGTTTGGCCAAGATGAATT 60.562 41.667 19.48 0.00 0.00 2.17
3899 8208 5.544650 CTTCTGTTTGGCCAAGATGAATTT 58.455 37.500 19.48 0.00 0.00 1.82
3900 8209 5.138125 TCTGTTTGGCCAAGATGAATTTC 57.862 39.130 19.48 3.10 0.00 2.17
3901 8210 4.834496 TCTGTTTGGCCAAGATGAATTTCT 59.166 37.500 19.48 0.00 0.00 2.52
3902 8211 5.305128 TCTGTTTGGCCAAGATGAATTTCTT 59.695 36.000 19.48 0.00 36.38 2.52
3903 8212 6.493115 TCTGTTTGGCCAAGATGAATTTCTTA 59.507 34.615 19.48 0.00 34.21 2.10
3904 8213 7.178983 TCTGTTTGGCCAAGATGAATTTCTTAT 59.821 33.333 19.48 0.00 34.21 1.73
3905 8214 8.359875 TGTTTGGCCAAGATGAATTTCTTATA 57.640 30.769 19.48 0.00 34.21 0.98
3906 8215 8.980596 TGTTTGGCCAAGATGAATTTCTTATAT 58.019 29.630 19.48 0.00 34.21 0.86
3909 8218 8.322906 TGGCCAAGATGAATTTCTTATATACG 57.677 34.615 0.61 0.00 34.21 3.06
3910 8219 7.094805 TGGCCAAGATGAATTTCTTATATACGC 60.095 37.037 0.61 0.00 34.21 4.42
3911 8220 7.094805 GGCCAAGATGAATTTCTTATATACGCA 60.095 37.037 0.00 0.00 34.21 5.24
3912 8221 7.959651 GCCAAGATGAATTTCTTATATACGCAG 59.040 37.037 0.00 0.00 34.21 5.18
3913 8222 9.208022 CCAAGATGAATTTCTTATATACGCAGA 57.792 33.333 0.00 0.00 34.21 4.26
3915 8224 8.472683 AGATGAATTTCTTATATACGCAGAGC 57.527 34.615 0.00 0.00 0.00 4.09
3916 8225 8.310382 AGATGAATTTCTTATATACGCAGAGCT 58.690 33.333 0.00 0.00 0.00 4.09
3917 8226 9.574458 GATGAATTTCTTATATACGCAGAGCTA 57.426 33.333 0.00 0.00 0.00 3.32
3918 8227 8.972262 TGAATTTCTTATATACGCAGAGCTAG 57.028 34.615 0.00 0.00 0.00 3.42
3919 8228 8.029522 TGAATTTCTTATATACGCAGAGCTAGG 58.970 37.037 0.00 0.00 0.00 3.02
3920 8229 4.966965 TCTTATATACGCAGAGCTAGGC 57.033 45.455 0.00 0.00 0.00 3.93
3929 8238 0.179089 CAGAGCTAGGCGCATCAACT 60.179 55.000 10.83 0.00 42.61 3.16
3993 8302 3.236632 GGTCATGCCAAGAAATTGACC 57.763 47.619 4.79 4.79 46.71 4.02
4005 8314 3.522750 AGAAATTGACCAGCAGAGGAGAT 59.477 43.478 0.00 0.00 0.00 2.75
4042 8381 0.524392 CACACGCAGACGAGAGATCC 60.524 60.000 0.00 0.00 43.93 3.36
4043 8382 1.064946 CACGCAGACGAGAGATCCC 59.935 63.158 0.00 0.00 43.93 3.85
4049 8388 2.043852 ACGAGAGATCCCAGCGGT 60.044 61.111 0.00 0.00 0.00 5.68
4050 8389 2.343163 GACGAGAGATCCCAGCGGTG 62.343 65.000 7.86 7.86 0.00 4.94
4051 8390 2.818132 GAGAGATCCCAGCGGTGG 59.182 66.667 26.78 26.78 44.56 4.61
4052 8391 3.453070 GAGAGATCCCAGCGGTGGC 62.453 68.421 28.23 14.65 43.44 5.01
4053 8392 4.899239 GAGATCCCAGCGGTGGCG 62.899 72.222 28.23 20.20 46.35 5.69
4078 8417 2.045926 CCCTCCCGGCAAAGAGTG 60.046 66.667 0.00 0.00 0.00 3.51
4079 8418 2.750350 CCTCCCGGCAAAGAGTGT 59.250 61.111 0.00 0.00 0.00 3.55
4080 8419 1.073199 CCTCCCGGCAAAGAGTGTT 59.927 57.895 0.00 0.00 0.00 3.32
4081 8420 1.237285 CCTCCCGGCAAAGAGTGTTG 61.237 60.000 0.00 0.00 0.00 3.33
4086 8425 4.522460 GCAAAGAGTGTTGCGAGC 57.478 55.556 0.00 0.00 44.05 5.03
4087 8426 1.944778 GCAAAGAGTGTTGCGAGCT 59.055 52.632 0.00 0.00 44.05 4.09
4088 8427 0.308993 GCAAAGAGTGTTGCGAGCTT 59.691 50.000 0.00 0.00 44.05 3.74
4089 8428 1.531149 GCAAAGAGTGTTGCGAGCTTA 59.469 47.619 0.00 0.00 44.05 3.09
4090 8429 2.032030 GCAAAGAGTGTTGCGAGCTTAA 60.032 45.455 0.00 0.00 44.05 1.85
4091 8430 3.548014 GCAAAGAGTGTTGCGAGCTTAAA 60.548 43.478 0.00 0.00 44.05 1.52
4092 8431 4.597079 CAAAGAGTGTTGCGAGCTTAAAA 58.403 39.130 0.00 0.00 0.00 1.52
4093 8432 3.879932 AGAGTGTTGCGAGCTTAAAAC 57.120 42.857 0.00 0.00 0.00 2.43
4094 8433 3.202906 AGAGTGTTGCGAGCTTAAAACA 58.797 40.909 5.28 5.28 0.00 2.83
4095 8434 3.625764 AGAGTGTTGCGAGCTTAAAACAA 59.374 39.130 9.71 0.00 34.54 2.83
4096 8435 4.275936 AGAGTGTTGCGAGCTTAAAACAAT 59.724 37.500 9.71 9.07 34.54 2.71
4097 8436 4.932146 AGTGTTGCGAGCTTAAAACAATT 58.068 34.783 9.71 1.60 34.54 2.32
4098 8437 6.017440 AGAGTGTTGCGAGCTTAAAACAATTA 60.017 34.615 9.71 0.00 34.54 1.40
4099 8438 6.677913 AGTGTTGCGAGCTTAAAACAATTAT 58.322 32.000 9.71 0.00 34.54 1.28
4100 8439 7.145323 AGTGTTGCGAGCTTAAAACAATTATT 58.855 30.769 9.71 0.00 34.54 1.40
4101 8440 8.293867 AGTGTTGCGAGCTTAAAACAATTATTA 58.706 29.630 9.71 0.00 34.54 0.98
4102 8441 8.575454 GTGTTGCGAGCTTAAAACAATTATTAG 58.425 33.333 9.71 0.00 34.54 1.73
4103 8442 7.272515 TGTTGCGAGCTTAAAACAATTATTAGC 59.727 33.333 6.58 0.00 29.96 3.09
4104 8443 6.847400 TGCGAGCTTAAAACAATTATTAGCA 58.153 32.000 0.00 0.00 0.00 3.49
4105 8444 7.479980 TGCGAGCTTAAAACAATTATTAGCAT 58.520 30.769 0.00 0.00 0.00 3.79
4106 8445 7.431960 TGCGAGCTTAAAACAATTATTAGCATG 59.568 33.333 0.00 0.00 0.00 4.06
4107 8446 7.565789 GCGAGCTTAAAACAATTATTAGCATGC 60.566 37.037 10.51 10.51 0.00 4.06
4108 8447 7.431960 CGAGCTTAAAACAATTATTAGCATGCA 59.568 33.333 21.98 0.00 0.00 3.96
4109 8448 9.252962 GAGCTTAAAACAATTATTAGCATGCAT 57.747 29.630 21.98 8.19 0.00 3.96
4114 8453 7.935338 AAACAATTATTAGCATGCATAGCAC 57.065 32.000 21.98 2.75 43.04 4.40
4115 8454 6.889301 ACAATTATTAGCATGCATAGCACT 57.111 33.333 21.98 0.00 43.04 4.40
4116 8455 7.984422 ACAATTATTAGCATGCATAGCACTA 57.016 32.000 21.98 0.00 43.04 2.74
4117 8456 8.037382 ACAATTATTAGCATGCATAGCACTAG 57.963 34.615 21.98 5.08 43.04 2.57
4118 8457 6.674694 ATTATTAGCATGCATAGCACTAGC 57.325 37.500 21.98 8.88 43.04 3.42
4119 8458 3.473923 TTAGCATGCATAGCACTAGCA 57.526 42.857 21.98 0.00 43.04 3.49
4121 8460 3.690475 AGCATGCATAGCACTAGCATA 57.310 42.857 21.98 0.00 46.39 3.14
4122 8461 4.217836 AGCATGCATAGCACTAGCATAT 57.782 40.909 21.98 0.00 46.39 1.78
4123 8462 4.586884 AGCATGCATAGCACTAGCATATT 58.413 39.130 21.98 0.00 46.39 1.28
4124 8463 5.737860 AGCATGCATAGCACTAGCATATTA 58.262 37.500 21.98 0.00 46.39 0.98
4125 8464 5.816258 AGCATGCATAGCACTAGCATATTAG 59.184 40.000 21.98 4.71 46.39 1.73
4126 8465 5.814188 GCATGCATAGCACTAGCATATTAGA 59.186 40.000 14.21 0.00 46.39 2.10
4127 8466 6.482641 GCATGCATAGCACTAGCATATTAGAT 59.517 38.462 14.21 0.00 46.39 1.98
4128 8467 7.518529 GCATGCATAGCACTAGCATATTAGATG 60.519 40.741 14.21 0.00 46.39 2.90
4129 8468 7.174107 TGCATAGCACTAGCATATTAGATGA 57.826 36.000 0.00 0.00 45.49 2.92
4130 8469 7.614494 TGCATAGCACTAGCATATTAGATGAA 58.386 34.615 0.00 0.00 45.49 2.57
4131 8470 8.262933 TGCATAGCACTAGCATATTAGATGAAT 58.737 33.333 0.00 0.00 45.49 2.57
4132 8471 8.763356 GCATAGCACTAGCATATTAGATGAATC 58.237 37.037 0.00 0.00 45.49 2.52
4133 8472 9.258826 CATAGCACTAGCATATTAGATGAATCC 57.741 37.037 0.00 0.00 45.49 3.01
4134 8473 7.250032 AGCACTAGCATATTAGATGAATCCA 57.750 36.000 0.00 0.00 45.49 3.41
4135 8474 7.683578 AGCACTAGCATATTAGATGAATCCAA 58.316 34.615 0.00 0.00 45.49 3.53
4136 8475 7.605691 AGCACTAGCATATTAGATGAATCCAAC 59.394 37.037 0.00 0.00 45.49 3.77
4137 8476 7.388776 GCACTAGCATATTAGATGAATCCAACA 59.611 37.037 0.00 0.00 41.58 3.33
4138 8477 9.445878 CACTAGCATATTAGATGAATCCAACAT 57.554 33.333 0.00 0.00 0.00 2.71
4139 8478 9.664332 ACTAGCATATTAGATGAATCCAACATC 57.336 33.333 0.00 0.00 42.81 3.06
4140 8479 9.662947 CTAGCATATTAGATGAATCCAACATCA 57.337 33.333 0.00 0.00 44.29 3.07
4141 8480 8.563123 AGCATATTAGATGAATCCAACATCAG 57.437 34.615 0.00 0.00 44.29 2.90
4142 8481 7.610692 AGCATATTAGATGAATCCAACATCAGG 59.389 37.037 0.00 0.00 44.29 3.86
4143 8482 7.609146 GCATATTAGATGAATCCAACATCAGGA 59.391 37.037 0.00 0.00 44.29 3.86
4144 8483 9.511272 CATATTAGATGAATCCAACATCAGGAA 57.489 33.333 0.00 0.00 44.29 3.36
4145 8484 7.814264 ATTAGATGAATCCAACATCAGGAAC 57.186 36.000 0.00 0.00 44.29 3.62
4146 8485 4.194640 AGATGAATCCAACATCAGGAACG 58.805 43.478 0.00 0.00 44.29 3.95
4147 8486 3.694043 TGAATCCAACATCAGGAACGA 57.306 42.857 0.00 0.00 38.93 3.85
4148 8487 3.334691 TGAATCCAACATCAGGAACGAC 58.665 45.455 0.00 0.00 38.93 4.34
4149 8488 3.244387 TGAATCCAACATCAGGAACGACA 60.244 43.478 0.00 0.00 38.93 4.35
4150 8489 2.455674 TCCAACATCAGGAACGACAG 57.544 50.000 0.00 0.00 30.71 3.51
4151 8490 1.001974 TCCAACATCAGGAACGACAGG 59.998 52.381 0.00 0.00 30.71 4.00
4152 8491 1.001974 CCAACATCAGGAACGACAGGA 59.998 52.381 0.00 0.00 0.00 3.86
4153 8492 2.355108 CCAACATCAGGAACGACAGGAT 60.355 50.000 0.00 0.00 0.00 3.24
4154 8493 2.932614 CAACATCAGGAACGACAGGATC 59.067 50.000 0.00 0.00 0.00 3.36
4162 8501 3.993234 CGACAGGATCGCGCATGC 61.993 66.667 7.91 7.91 45.52 4.06
4163 8502 2.891936 GACAGGATCGCGCATGCA 60.892 61.111 19.57 0.00 42.97 3.96
4164 8503 2.436469 ACAGGATCGCGCATGCAA 60.436 55.556 19.57 2.32 42.97 4.08
4165 8504 2.023741 CAGGATCGCGCATGCAAC 59.976 61.111 19.57 8.14 42.97 4.17
4166 8505 2.436469 AGGATCGCGCATGCAACA 60.436 55.556 19.57 0.00 42.97 3.33
4167 8506 2.023741 GGATCGCGCATGCAACAG 59.976 61.111 19.57 5.43 42.97 3.16
4168 8507 2.463620 GGATCGCGCATGCAACAGA 61.464 57.895 19.57 10.92 42.97 3.41
4169 8508 1.425031 GATCGCGCATGCAACAGAA 59.575 52.632 19.57 0.00 42.97 3.02
4170 8509 0.588233 GATCGCGCATGCAACAGAAG 60.588 55.000 19.57 0.00 42.97 2.85
4171 8510 2.588146 ATCGCGCATGCAACAGAAGC 62.588 55.000 19.57 9.93 42.97 3.86
4172 8511 2.505557 GCGCATGCAACAGAAGCC 60.506 61.111 19.57 0.00 42.15 4.35
4173 8512 2.956194 CGCATGCAACAGAAGCCA 59.044 55.556 19.57 0.00 0.00 4.75
4174 8513 1.509463 CGCATGCAACAGAAGCCAT 59.491 52.632 19.57 0.00 0.00 4.40
4175 8514 0.734309 CGCATGCAACAGAAGCCATA 59.266 50.000 19.57 0.00 0.00 2.74
4176 8515 1.132834 CGCATGCAACAGAAGCCATAA 59.867 47.619 19.57 0.00 0.00 1.90
4177 8516 2.223641 CGCATGCAACAGAAGCCATAAT 60.224 45.455 19.57 0.00 0.00 1.28
4178 8517 3.003585 CGCATGCAACAGAAGCCATAATA 59.996 43.478 19.57 0.00 0.00 0.98
4179 8518 4.497842 CGCATGCAACAGAAGCCATAATAA 60.498 41.667 19.57 0.00 0.00 1.40
4180 8519 5.350633 GCATGCAACAGAAGCCATAATAAA 58.649 37.500 14.21 0.00 0.00 1.40
4181 8520 5.811613 GCATGCAACAGAAGCCATAATAAAA 59.188 36.000 14.21 0.00 0.00 1.52
4182 8521 6.019318 GCATGCAACAGAAGCCATAATAAAAG 60.019 38.462 14.21 0.00 0.00 2.27
4183 8522 6.832520 TGCAACAGAAGCCATAATAAAAGA 57.167 33.333 0.00 0.00 0.00 2.52
4184 8523 7.408756 TGCAACAGAAGCCATAATAAAAGAT 57.591 32.000 0.00 0.00 0.00 2.40
4185 8524 8.518430 TGCAACAGAAGCCATAATAAAAGATA 57.482 30.769 0.00 0.00 0.00 1.98
4186 8525 8.623903 TGCAACAGAAGCCATAATAAAAGATAG 58.376 33.333 0.00 0.00 0.00 2.08
4187 8526 8.078596 GCAACAGAAGCCATAATAAAAGATAGG 58.921 37.037 0.00 0.00 0.00 2.57
4188 8527 9.342308 CAACAGAAGCCATAATAAAAGATAGGA 57.658 33.333 0.00 0.00 0.00 2.94
4189 8528 8.910351 ACAGAAGCCATAATAAAAGATAGGAC 57.090 34.615 0.00 0.00 0.00 3.85
4190 8529 7.939588 ACAGAAGCCATAATAAAAGATAGGACC 59.060 37.037 0.00 0.00 0.00 4.46
4191 8530 7.939039 CAGAAGCCATAATAAAAGATAGGACCA 59.061 37.037 0.00 0.00 0.00 4.02
4192 8531 8.160106 AGAAGCCATAATAAAAGATAGGACCAG 58.840 37.037 0.00 0.00 0.00 4.00
4193 8532 7.633018 AGCCATAATAAAAGATAGGACCAGA 57.367 36.000 0.00 0.00 0.00 3.86
4194 8533 8.224620 AGCCATAATAAAAGATAGGACCAGAT 57.775 34.615 0.00 0.00 0.00 2.90
4195 8534 8.325046 AGCCATAATAAAAGATAGGACCAGATC 58.675 37.037 0.00 0.00 0.00 2.75
4196 8535 8.103305 GCCATAATAAAAGATAGGACCAGATCA 58.897 37.037 8.64 0.00 0.00 2.92
4202 8541 6.603940 AAAGATAGGACCAGATCATAGAGC 57.396 41.667 8.64 0.00 0.00 4.09
4203 8542 5.268131 AGATAGGACCAGATCATAGAGCA 57.732 43.478 8.64 0.00 0.00 4.26
4204 8543 5.263599 AGATAGGACCAGATCATAGAGCAG 58.736 45.833 8.64 0.00 0.00 4.24
4205 8544 3.609256 AGGACCAGATCATAGAGCAGA 57.391 47.619 0.00 0.00 0.00 4.26
4206 8545 4.130719 AGGACCAGATCATAGAGCAGAT 57.869 45.455 0.00 0.00 0.00 2.90
4207 8546 5.268131 AGGACCAGATCATAGAGCAGATA 57.732 43.478 0.00 0.00 0.00 1.98
4208 8547 5.016173 AGGACCAGATCATAGAGCAGATAC 58.984 45.833 0.00 0.00 0.00 2.24
4209 8548 5.016173 GGACCAGATCATAGAGCAGATACT 58.984 45.833 0.00 0.00 0.00 2.12
4210 8549 5.105797 GGACCAGATCATAGAGCAGATACTG 60.106 48.000 0.00 0.00 34.12 2.74
4211 8550 5.639139 ACCAGATCATAGAGCAGATACTGA 58.361 41.667 2.81 0.00 32.44 3.41
4212 8551 6.255287 ACCAGATCATAGAGCAGATACTGAT 58.745 40.000 2.81 0.00 32.44 2.90
4213 8552 6.377996 ACCAGATCATAGAGCAGATACTGATC 59.622 42.308 8.65 8.65 45.85 2.92
4222 8561 5.767269 GAGCAGATACTGATCGATTGAAGA 58.233 41.667 0.00 0.00 37.16 2.87
4223 8562 6.343716 AGCAGATACTGATCGATTGAAGAT 57.656 37.500 0.00 0.00 37.15 2.40
4224 8563 6.157904 AGCAGATACTGATCGATTGAAGATG 58.842 40.000 0.00 0.00 37.15 2.90
4225 8564 6.015603 AGCAGATACTGATCGATTGAAGATGA 60.016 38.462 0.00 0.00 37.15 2.92
4226 8565 6.644181 GCAGATACTGATCGATTGAAGATGAA 59.356 38.462 0.00 0.00 37.15 2.57
4227 8566 7.148771 GCAGATACTGATCGATTGAAGATGAAG 60.149 40.741 0.00 0.00 37.15 3.02
4228 8567 7.866898 CAGATACTGATCGATTGAAGATGAAGT 59.133 37.037 0.00 0.00 37.15 3.01
4229 8568 9.072375 AGATACTGATCGATTGAAGATGAAGTA 57.928 33.333 0.00 0.00 37.15 2.24
4230 8569 9.340695 GATACTGATCGATTGAAGATGAAGTAG 57.659 37.037 0.00 0.00 32.30 2.57
4231 8570 5.982516 ACTGATCGATTGAAGATGAAGTAGC 59.017 40.000 0.00 0.00 0.00 3.58
4232 8571 4.978580 TGATCGATTGAAGATGAAGTAGCG 59.021 41.667 0.00 0.00 0.00 4.26
4233 8572 3.706698 TCGATTGAAGATGAAGTAGCGG 58.293 45.455 0.00 0.00 0.00 5.52
4234 8573 3.130516 TCGATTGAAGATGAAGTAGCGGT 59.869 43.478 0.00 0.00 0.00 5.68
4235 8574 3.243877 CGATTGAAGATGAAGTAGCGGTG 59.756 47.826 0.00 0.00 0.00 4.94
4236 8575 2.672961 TGAAGATGAAGTAGCGGTGG 57.327 50.000 0.00 0.00 0.00 4.61
4237 8576 1.899814 TGAAGATGAAGTAGCGGTGGT 59.100 47.619 0.00 0.00 0.00 4.16
4238 8577 2.301870 TGAAGATGAAGTAGCGGTGGTT 59.698 45.455 0.00 0.00 0.00 3.67
4239 8578 2.386661 AGATGAAGTAGCGGTGGTTG 57.613 50.000 0.00 0.00 0.00 3.77
4240 8579 1.623811 AGATGAAGTAGCGGTGGTTGT 59.376 47.619 0.00 0.00 0.00 3.32
4241 8580 2.038557 AGATGAAGTAGCGGTGGTTGTT 59.961 45.455 0.00 0.00 0.00 2.83
4242 8581 1.588674 TGAAGTAGCGGTGGTTGTTG 58.411 50.000 0.00 0.00 0.00 3.33
4243 8582 0.237498 GAAGTAGCGGTGGTTGTTGC 59.763 55.000 0.00 0.00 0.00 4.17
4244 8583 0.464735 AAGTAGCGGTGGTTGTTGCA 60.465 50.000 0.00 0.00 0.00 4.08
4245 8584 0.250727 AGTAGCGGTGGTTGTTGCAT 60.251 50.000 0.00 0.00 0.00 3.96
4246 8585 0.109781 GTAGCGGTGGTTGTTGCATG 60.110 55.000 0.00 0.00 0.00 4.06
4247 8586 1.861542 TAGCGGTGGTTGTTGCATGC 61.862 55.000 11.82 11.82 0.00 4.06
4248 8587 2.428902 CGGTGGTTGTTGCATGCG 60.429 61.111 14.09 0.00 0.00 4.73
4249 8588 2.902419 CGGTGGTTGTTGCATGCGA 61.902 57.895 14.09 8.74 0.00 5.10
4250 8589 1.586028 GGTGGTTGTTGCATGCGAT 59.414 52.632 11.68 0.00 0.00 4.58
4251 8590 0.733566 GGTGGTTGTTGCATGCGATG 60.734 55.000 11.68 0.00 0.00 3.84
4252 8591 0.039256 GTGGTTGTTGCATGCGATGT 60.039 50.000 11.68 0.00 0.00 3.06
4253 8592 0.672889 TGGTTGTTGCATGCGATGTT 59.327 45.000 11.68 0.00 0.00 2.71
4254 8593 1.882623 TGGTTGTTGCATGCGATGTTA 59.117 42.857 11.68 0.00 0.00 2.41
4255 8594 2.491298 TGGTTGTTGCATGCGATGTTAT 59.509 40.909 11.68 0.00 0.00 1.89
4256 8595 3.056962 TGGTTGTTGCATGCGATGTTATT 60.057 39.130 11.68 0.00 0.00 1.40
4257 8596 3.925913 GGTTGTTGCATGCGATGTTATTT 59.074 39.130 11.68 0.00 0.00 1.40
4258 8597 5.098893 GGTTGTTGCATGCGATGTTATTTA 58.901 37.500 11.68 0.00 0.00 1.40
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
19 20 1.582968 GTTGCGAGGTGGTCTACGA 59.417 57.895 0.00 0.00 0.00 3.43
35 36 6.805271 GGCATCGTACATGTTATATAGTCGTT 59.195 38.462 2.30 0.00 0.00 3.85
43 44 8.474831 AGCATATAAGGCATCGTACATGTTATA 58.525 33.333 2.30 0.00 0.00 0.98
137 140 4.457949 GCCTAAGAAATGAGAAAAACGGGA 59.542 41.667 0.00 0.00 0.00 5.14
355 434 9.961265 GTTACTTTGGCCTGGATTAATATTTAC 57.039 33.333 3.32 0.00 0.00 2.01
506 588 5.297569 ACTCAATATAGAGAGGGCCAAAC 57.702 43.478 6.18 0.00 38.98 2.93
507 589 5.975988 AACTCAATATAGAGAGGGCCAAA 57.024 39.130 6.18 0.00 38.98 3.28
511 593 6.210584 AGCTAGAAACTCAATATAGAGAGGGC 59.789 42.308 0.00 0.00 38.98 5.19
515 597 7.441890 CGGAGCTAGAAACTCAATATAGAGA 57.558 40.000 0.00 0.00 38.98 3.10
538 620 1.081892 CTCCAGTTCAATCAGTGGCG 58.918 55.000 0.00 0.00 37.20 5.69
539 621 2.479566 TCTCCAGTTCAATCAGTGGC 57.520 50.000 0.00 0.00 37.20 5.01
540 622 5.474532 TCATTTTCTCCAGTTCAATCAGTGG 59.525 40.000 0.00 0.00 38.49 4.00
542 624 7.255730 CCTTTCATTTTCTCCAGTTCAATCAGT 60.256 37.037 0.00 0.00 0.00 3.41
543 625 7.088905 CCTTTCATTTTCTCCAGTTCAATCAG 58.911 38.462 0.00 0.00 0.00 2.90
545 627 6.986250 ACCTTTCATTTTCTCCAGTTCAATC 58.014 36.000 0.00 0.00 0.00 2.67
599 705 6.071952 TGGCATCTTTTCTACTTCCATTGAAC 60.072 38.462 0.00 0.00 0.00 3.18
622 1138 4.252073 CAGCCAGCTAGCTAGATTTATGG 58.748 47.826 25.15 20.64 42.61 2.74
640 1156 1.134280 TCTTGCTTCTCTATGCCAGCC 60.134 52.381 0.00 0.00 0.00 4.85
650 1166 4.762251 AGGTTTATGGTTGTCTTGCTTCTC 59.238 41.667 0.00 0.00 0.00 2.87
748 1274 5.982890 ACAATATTAACTTGGCAGTTGCT 57.017 34.783 3.88 3.34 43.54 3.91
768 1294 9.337396 AGTGTTTTTGTCTTGTCATCTAATACA 57.663 29.630 0.00 0.00 0.00 2.29
844 2813 5.794687 TGTGTATGTAGCTGCACATAAAC 57.205 39.130 23.75 23.75 44.67 2.01
924 2893 9.743057 CTGTTTTTGACCTAATTCATGTGTAAA 57.257 29.630 0.00 0.00 0.00 2.01
935 2904 6.772716 AGTGTGTCATCTGTTTTTGACCTAAT 59.227 34.615 0.00 0.00 41.22 1.73
942 2911 7.194607 AGATGTAGTGTGTCATCTGTTTTTG 57.805 36.000 6.83 0.00 45.76 2.44
948 2917 5.954335 TGTGTAGATGTAGTGTGTCATCTG 58.046 41.667 15.11 0.00 46.54 2.90
950 2919 5.233050 GCATGTGTAGATGTAGTGTGTCATC 59.767 44.000 0.00 0.00 40.21 2.92
1271 3246 3.000041 GTCATGTATTTGACACAGGCGA 59.000 45.455 0.00 0.00 44.38 5.54
1300 3278 8.429493 TCTTTGATTAGTCTATGTGCTTCATG 57.571 34.615 5.48 0.00 37.91 3.07
1876 4528 2.298661 CCTAGCCGGGGTCAAGGTT 61.299 63.158 2.18 0.00 0.00 3.50
2123 4775 2.264480 CCCGTGGTCGCTGATCAA 59.736 61.111 0.00 0.00 35.54 2.57
2477 5129 2.143008 TGTTACATATACCTGCGCCG 57.857 50.000 4.18 0.00 0.00 6.46
2509 5197 4.884668 TTACTCTTGAATTCAGGTCGGT 57.115 40.909 16.29 14.84 0.00 4.69
2913 6249 2.481854 CATCGGAGAAGAGCAAGATGG 58.518 52.381 0.00 0.00 43.58 3.51
2936 6272 4.810191 AGTAGTCTCCCTTGTTGATCAC 57.190 45.455 0.00 0.00 0.00 3.06
3083 6419 7.253783 CGTCATACATGAGTGAGTTGATGTAAC 60.254 40.741 0.00 0.00 37.51 2.50
3246 6583 5.510430 GGAATTTTGGACTAGGTGGATCTT 58.490 41.667 0.00 0.00 0.00 2.40
3350 6688 1.482278 CGCGTTAATCTCTCCTCTGC 58.518 55.000 0.00 0.00 0.00 4.26
3351 6689 1.676529 TCCGCGTTAATCTCTCCTCTG 59.323 52.381 4.92 0.00 0.00 3.35
3352 6690 1.950909 CTCCGCGTTAATCTCTCCTCT 59.049 52.381 4.92 0.00 0.00 3.69
3353 6691 1.677052 ACTCCGCGTTAATCTCTCCTC 59.323 52.381 4.92 0.00 0.00 3.71
3354 6692 1.405821 CACTCCGCGTTAATCTCTCCT 59.594 52.381 4.92 0.00 0.00 3.69
3355 6693 1.404391 TCACTCCGCGTTAATCTCTCC 59.596 52.381 4.92 0.00 0.00 3.71
3356 6694 2.452105 GTCACTCCGCGTTAATCTCTC 58.548 52.381 4.92 0.00 0.00 3.20
3358 6696 1.189403 CGTCACTCCGCGTTAATCTC 58.811 55.000 4.92 0.00 0.00 2.75
3359 6697 0.179145 CCGTCACTCCGCGTTAATCT 60.179 55.000 4.92 0.00 0.00 2.40
3360 6698 0.179156 TCCGTCACTCCGCGTTAATC 60.179 55.000 4.92 0.00 0.00 1.75
3361 6699 0.457337 GTCCGTCACTCCGCGTTAAT 60.457 55.000 4.92 0.00 0.00 1.40
3363 6701 1.588824 ATGTCCGTCACTCCGCGTTA 61.589 55.000 4.92 0.00 0.00 3.18
3364 6702 2.430382 AATGTCCGTCACTCCGCGTT 62.430 55.000 4.92 0.00 0.00 4.84
3365 6703 2.814183 GAATGTCCGTCACTCCGCGT 62.814 60.000 4.92 0.00 0.00 6.01
3367 6705 0.460284 ATGAATGTCCGTCACTCCGC 60.460 55.000 0.00 0.00 0.00 5.54
3368 6706 1.280982 CATGAATGTCCGTCACTCCG 58.719 55.000 0.00 0.00 0.00 4.63
3369 6707 1.009829 GCATGAATGTCCGTCACTCC 58.990 55.000 0.00 0.00 0.00 3.85
3370 6708 1.662629 CTGCATGAATGTCCGTCACTC 59.337 52.381 0.00 0.00 0.00 3.51
3401 6758 0.616395 TCATCACGTGCCCCTCCTTA 60.616 55.000 11.67 0.00 0.00 2.69
3502 6865 1.429463 GTGTGAGTGGTGACGATTCC 58.571 55.000 0.00 0.00 0.00 3.01
3544 6907 5.105675 ACGGGCCGAAAATGTAAATTACAAT 60.106 36.000 35.78 0.00 42.76 2.71
3662 7050 5.474189 CACGGTTCAAATTAAGGGGAAACTA 59.526 40.000 0.00 0.00 0.00 2.24
3733 8001 6.359804 TCTTAATCTGGACCATCATTCTTGG 58.640 40.000 0.00 0.00 40.26 3.61
3759 8027 6.616260 GCAAGTACAAAACAAATGCTACATGC 60.616 38.462 0.00 0.00 43.25 4.06
3760 8028 6.642131 AGCAAGTACAAAACAAATGCTACATG 59.358 34.615 0.00 0.00 40.67 3.21
3761 8029 6.748132 AGCAAGTACAAAACAAATGCTACAT 58.252 32.000 0.00 0.00 40.67 2.29
3762 8030 6.142818 AGCAAGTACAAAACAAATGCTACA 57.857 33.333 0.00 0.00 40.67 2.74
3763 8031 6.562086 GCAAGCAAGTACAAAACAAATGCTAC 60.562 38.462 0.00 0.00 41.21 3.58
3764 8032 5.461737 GCAAGCAAGTACAAAACAAATGCTA 59.538 36.000 0.00 0.00 41.21 3.49
3765 8033 4.270808 GCAAGCAAGTACAAAACAAATGCT 59.729 37.500 0.00 0.00 42.79 3.79
3766 8034 4.270808 AGCAAGCAAGTACAAAACAAATGC 59.729 37.500 0.00 0.00 35.73 3.56
3767 8035 5.730269 CAGCAAGCAAGTACAAAACAAATG 58.270 37.500 0.00 0.00 0.00 2.32
3768 8036 4.270808 GCAGCAAGCAAGTACAAAACAAAT 59.729 37.500 0.00 0.00 44.79 2.32
3769 8037 3.616379 GCAGCAAGCAAGTACAAAACAAA 59.384 39.130 0.00 0.00 44.79 2.83
3770 8038 3.186119 GCAGCAAGCAAGTACAAAACAA 58.814 40.909 0.00 0.00 44.79 2.83
3771 8039 2.808244 GCAGCAAGCAAGTACAAAACA 58.192 42.857 0.00 0.00 44.79 2.83
3833 8142 2.416836 CCCAGTCGCTGACTTCGAAATA 60.417 50.000 8.23 0.00 41.37 1.40
3849 8158 1.377202 CCTAACATGCACGCCCAGT 60.377 57.895 0.00 0.00 0.00 4.00
3852 8161 1.014352 CTAACCTAACATGCACGCCC 58.986 55.000 0.00 0.00 0.00 6.13
3858 8167 4.509600 CAGAAGCTAGCTAACCTAACATGC 59.490 45.833 19.70 0.00 0.00 4.06
3878 8187 4.834496 AGAAATTCATCTTGGCCAAACAGA 59.166 37.500 20.91 14.15 0.00 3.41
3897 8206 5.619309 CGCCTAGCTCTGCGTATATAAGAAA 60.619 44.000 18.61 0.00 45.43 2.52
3898 8207 4.142665 CGCCTAGCTCTGCGTATATAAGAA 60.143 45.833 18.61 0.00 45.43 2.52
3899 8208 3.374367 CGCCTAGCTCTGCGTATATAAGA 59.626 47.826 18.61 0.00 45.43 2.10
3900 8209 3.686128 CGCCTAGCTCTGCGTATATAAG 58.314 50.000 18.61 0.00 45.43 1.73
3901 8210 3.759527 CGCCTAGCTCTGCGTATATAA 57.240 47.619 18.61 0.00 45.43 0.98
3915 8224 1.725641 TCACAAGTTGATGCGCCTAG 58.274 50.000 10.54 0.00 0.00 3.02
3916 8225 2.177394 TTCACAAGTTGATGCGCCTA 57.823 45.000 10.54 0.00 32.84 3.93
3917 8226 1.538047 ATTCACAAGTTGATGCGCCT 58.462 45.000 10.54 0.00 32.84 5.52
3918 8227 3.698029 ATATTCACAAGTTGATGCGCC 57.302 42.857 10.54 0.00 32.84 6.53
3919 8228 7.306167 CCATTTTATATTCACAAGTTGATGCGC 60.306 37.037 10.54 0.00 32.84 6.09
3920 8229 7.914871 TCCATTTTATATTCACAAGTTGATGCG 59.085 33.333 10.54 0.00 32.84 4.73
3921 8230 9.241317 CTCCATTTTATATTCACAAGTTGATGC 57.759 33.333 10.54 0.00 32.84 3.91
3929 8238 9.679661 TTAGCTGACTCCATTTTATATTCACAA 57.320 29.630 0.00 0.00 0.00 3.33
3993 8302 4.629200 GCGGAATTAATATCTCCTCTGCTG 59.371 45.833 8.50 0.00 33.38 4.41
4005 8314 5.564768 CGTGTGATTTGTGCGGAATTAATA 58.435 37.500 0.00 0.00 0.00 0.98
4063 8402 1.856265 GCAACACTCTTTGCCGGGAG 61.856 60.000 2.18 3.37 45.22 4.30
4064 8403 1.896660 GCAACACTCTTTGCCGGGA 60.897 57.895 2.18 0.00 45.22 5.14
4065 8404 2.644992 GCAACACTCTTTGCCGGG 59.355 61.111 2.18 0.00 45.22 5.73
4070 8409 3.878086 TTAAGCTCGCAACACTCTTTG 57.122 42.857 0.00 0.00 0.00 2.77
4071 8410 4.095782 TGTTTTAAGCTCGCAACACTCTTT 59.904 37.500 0.00 0.00 0.00 2.52
4072 8411 3.625764 TGTTTTAAGCTCGCAACACTCTT 59.374 39.130 0.00 0.00 0.00 2.85
4073 8412 3.202906 TGTTTTAAGCTCGCAACACTCT 58.797 40.909 0.00 0.00 0.00 3.24
4074 8413 3.602390 TGTTTTAAGCTCGCAACACTC 57.398 42.857 0.00 0.00 0.00 3.51
4075 8414 4.568152 ATTGTTTTAAGCTCGCAACACT 57.432 36.364 4.49 0.00 0.00 3.55
4076 8415 6.927933 ATAATTGTTTTAAGCTCGCAACAC 57.072 33.333 4.49 0.00 0.00 3.32
4077 8416 7.272515 GCTAATAATTGTTTTAAGCTCGCAACA 59.727 33.333 0.00 0.00 0.00 3.33
4078 8417 7.272515 TGCTAATAATTGTTTTAAGCTCGCAAC 59.727 33.333 8.91 0.00 0.00 4.17
4079 8418 7.309177 TGCTAATAATTGTTTTAAGCTCGCAA 58.691 30.769 8.91 0.00 0.00 4.85
4080 8419 6.847400 TGCTAATAATTGTTTTAAGCTCGCA 58.153 32.000 8.91 0.00 0.00 5.10
4081 8420 7.565789 GCATGCTAATAATTGTTTTAAGCTCGC 60.566 37.037 11.37 7.67 0.00 5.03
4082 8421 7.431960 TGCATGCTAATAATTGTTTTAAGCTCG 59.568 33.333 20.33 3.00 0.00 5.03
4083 8422 8.633075 TGCATGCTAATAATTGTTTTAAGCTC 57.367 30.769 20.33 1.63 0.00 4.09
4088 8427 9.462174 GTGCTATGCATGCTAATAATTGTTTTA 57.538 29.630 20.33 0.00 41.91 1.52
4089 8428 8.199449 AGTGCTATGCATGCTAATAATTGTTTT 58.801 29.630 20.33 0.00 41.91 2.43
4090 8429 7.719483 AGTGCTATGCATGCTAATAATTGTTT 58.281 30.769 20.33 0.00 41.91 2.83
4091 8430 7.281040 AGTGCTATGCATGCTAATAATTGTT 57.719 32.000 20.33 0.00 41.91 2.83
4092 8431 6.889301 AGTGCTATGCATGCTAATAATTGT 57.111 33.333 20.33 0.00 41.91 2.71
4093 8432 6.965500 GCTAGTGCTATGCATGCTAATAATTG 59.035 38.462 20.33 5.68 41.91 2.32
4094 8433 6.656270 TGCTAGTGCTATGCATGCTAATAATT 59.344 34.615 20.33 2.76 41.91 1.40
4095 8434 6.175471 TGCTAGTGCTATGCATGCTAATAAT 58.825 36.000 20.33 5.95 41.91 1.28
4096 8435 5.550290 TGCTAGTGCTATGCATGCTAATAA 58.450 37.500 20.33 0.00 41.91 1.40
4097 8436 5.151297 TGCTAGTGCTATGCATGCTAATA 57.849 39.130 20.33 8.37 41.91 0.98
4098 8437 4.011966 TGCTAGTGCTATGCATGCTAAT 57.988 40.909 20.33 7.54 41.91 1.73
4099 8438 3.473923 TGCTAGTGCTATGCATGCTAA 57.526 42.857 20.33 5.79 41.91 3.09
4100 8439 3.690475 ATGCTAGTGCTATGCATGCTA 57.310 42.857 20.33 5.73 44.48 3.49
4101 8440 2.563261 ATGCTAGTGCTATGCATGCT 57.437 45.000 20.33 7.07 44.48 3.79
4102 8441 4.959596 AATATGCTAGTGCTATGCATGC 57.040 40.909 11.82 11.82 45.52 4.06
4103 8442 7.709613 TCATCTAATATGCTAGTGCTATGCATG 59.290 37.037 10.16 0.26 45.52 4.06
4105 8444 7.174107 TCATCTAATATGCTAGTGCTATGCA 57.826 36.000 0.00 0.00 41.13 3.96
4106 8445 8.659925 ATTCATCTAATATGCTAGTGCTATGC 57.340 34.615 0.00 0.00 40.48 3.14
4107 8446 9.258826 GGATTCATCTAATATGCTAGTGCTATG 57.741 37.037 0.00 0.00 40.48 2.23
4108 8447 8.985922 TGGATTCATCTAATATGCTAGTGCTAT 58.014 33.333 0.00 0.00 40.48 2.97
4109 8448 8.366359 TGGATTCATCTAATATGCTAGTGCTA 57.634 34.615 0.00 0.00 40.48 3.49
4110 8449 7.250032 TGGATTCATCTAATATGCTAGTGCT 57.750 36.000 0.00 0.00 40.48 4.40
4111 8450 7.388776 TGTTGGATTCATCTAATATGCTAGTGC 59.611 37.037 0.00 0.00 33.12 4.40
4112 8451 8.837788 TGTTGGATTCATCTAATATGCTAGTG 57.162 34.615 0.00 0.00 29.93 2.74
4113 8452 9.664332 GATGTTGGATTCATCTAATATGCTAGT 57.336 33.333 0.74 0.00 38.72 2.57
4114 8453 9.662947 TGATGTTGGATTCATCTAATATGCTAG 57.337 33.333 0.74 0.00 41.30 3.42
4115 8454 9.662947 CTGATGTTGGATTCATCTAATATGCTA 57.337 33.333 0.74 0.00 41.30 3.49
4116 8455 7.610692 CCTGATGTTGGATTCATCTAATATGCT 59.389 37.037 0.74 0.00 41.30 3.79
4117 8456 7.609146 TCCTGATGTTGGATTCATCTAATATGC 59.391 37.037 0.74 0.00 41.30 3.14
4118 8457 9.511272 TTCCTGATGTTGGATTCATCTAATATG 57.489 33.333 0.74 0.00 41.30 1.78
4119 8458 9.512588 GTTCCTGATGTTGGATTCATCTAATAT 57.487 33.333 7.30 0.00 41.30 1.28
4120 8459 7.657354 CGTTCCTGATGTTGGATTCATCTAATA 59.343 37.037 7.30 0.00 41.30 0.98
4121 8460 6.484643 CGTTCCTGATGTTGGATTCATCTAAT 59.515 38.462 7.30 0.00 41.30 1.73
4122 8461 5.817296 CGTTCCTGATGTTGGATTCATCTAA 59.183 40.000 7.30 0.00 41.30 2.10
4123 8462 5.128663 TCGTTCCTGATGTTGGATTCATCTA 59.871 40.000 7.30 0.00 41.30 1.98
4124 8463 4.080919 TCGTTCCTGATGTTGGATTCATCT 60.081 41.667 7.30 0.00 41.30 2.90
4125 8464 4.034510 GTCGTTCCTGATGTTGGATTCATC 59.965 45.833 0.00 0.00 41.16 2.92
4126 8465 3.941483 GTCGTTCCTGATGTTGGATTCAT 59.059 43.478 0.00 0.00 33.09 2.57
4127 8466 3.244387 TGTCGTTCCTGATGTTGGATTCA 60.244 43.478 0.00 0.00 33.09 2.57
4128 8467 3.334691 TGTCGTTCCTGATGTTGGATTC 58.665 45.455 0.00 0.00 33.09 2.52
4129 8468 3.338249 CTGTCGTTCCTGATGTTGGATT 58.662 45.455 0.00 0.00 33.09 3.01
4130 8469 2.355108 CCTGTCGTTCCTGATGTTGGAT 60.355 50.000 0.00 0.00 33.09 3.41
4131 8470 1.001974 CCTGTCGTTCCTGATGTTGGA 59.998 52.381 0.00 0.00 0.00 3.53
4132 8471 1.001974 TCCTGTCGTTCCTGATGTTGG 59.998 52.381 0.00 0.00 0.00 3.77
4133 8472 2.455674 TCCTGTCGTTCCTGATGTTG 57.544 50.000 0.00 0.00 0.00 3.33
4134 8473 2.417379 CGATCCTGTCGTTCCTGATGTT 60.417 50.000 0.00 0.00 45.19 2.71
4135 8474 1.135139 CGATCCTGTCGTTCCTGATGT 59.865 52.381 0.00 0.00 45.19 3.06
4136 8475 1.845266 CGATCCTGTCGTTCCTGATG 58.155 55.000 0.00 0.00 45.19 3.07
4146 8485 2.463620 TTGCATGCGCGATCCTGTC 61.464 57.895 12.10 0.00 42.97 3.51
4147 8486 2.436469 TTGCATGCGCGATCCTGT 60.436 55.556 12.10 0.00 42.97 4.00
4148 8487 2.023741 GTTGCATGCGCGATCCTG 59.976 61.111 12.10 1.24 42.97 3.86
4149 8488 2.436469 TGTTGCATGCGCGATCCT 60.436 55.556 12.10 0.00 42.97 3.24
4150 8489 1.980951 TTCTGTTGCATGCGCGATCC 61.981 55.000 12.10 0.00 42.97 3.36
4151 8490 0.588233 CTTCTGTTGCATGCGCGATC 60.588 55.000 12.10 0.00 42.97 3.69
4152 8491 1.426621 CTTCTGTTGCATGCGCGAT 59.573 52.632 12.10 0.00 42.97 4.58
4153 8492 2.862436 CTTCTGTTGCATGCGCGA 59.138 55.556 12.10 3.57 42.97 5.87
4154 8493 2.872925 GCTTCTGTTGCATGCGCG 60.873 61.111 14.09 0.00 42.97 6.86
4155 8494 2.505557 GGCTTCTGTTGCATGCGC 60.506 61.111 14.09 8.09 39.24 6.09
4156 8495 0.734309 TATGGCTTCTGTTGCATGCG 59.266 50.000 14.09 0.00 0.00 4.73
4157 8496 2.945447 TTATGGCTTCTGTTGCATGC 57.055 45.000 11.82 11.82 0.00 4.06
4158 8497 7.259882 TCTTTTATTATGGCTTCTGTTGCATG 58.740 34.615 0.00 0.00 0.00 4.06
4159 8498 7.408756 TCTTTTATTATGGCTTCTGTTGCAT 57.591 32.000 0.00 0.00 0.00 3.96
4160 8499 6.832520 TCTTTTATTATGGCTTCTGTTGCA 57.167 33.333 0.00 0.00 0.00 4.08
4161 8500 8.078596 CCTATCTTTTATTATGGCTTCTGTTGC 58.921 37.037 0.00 0.00 0.00 4.17
4162 8501 9.342308 TCCTATCTTTTATTATGGCTTCTGTTG 57.658 33.333 0.00 0.00 0.00 3.33
4163 8502 9.343539 GTCCTATCTTTTATTATGGCTTCTGTT 57.656 33.333 0.00 0.00 0.00 3.16
4164 8503 7.939588 GGTCCTATCTTTTATTATGGCTTCTGT 59.060 37.037 0.00 0.00 0.00 3.41
4165 8504 7.939039 TGGTCCTATCTTTTATTATGGCTTCTG 59.061 37.037 0.00 0.00 0.00 3.02
4166 8505 8.045720 TGGTCCTATCTTTTATTATGGCTTCT 57.954 34.615 0.00 0.00 0.00 2.85
4167 8506 8.157476 TCTGGTCCTATCTTTTATTATGGCTTC 58.843 37.037 0.00 0.00 0.00 3.86
4168 8507 8.045720 TCTGGTCCTATCTTTTATTATGGCTT 57.954 34.615 0.00 0.00 0.00 4.35
4169 8508 7.633018 TCTGGTCCTATCTTTTATTATGGCT 57.367 36.000 0.00 0.00 0.00 4.75
4170 8509 8.103305 TGATCTGGTCCTATCTTTTATTATGGC 58.897 37.037 0.00 0.00 0.00 4.40
4176 8515 8.757877 GCTCTATGATCTGGTCCTATCTTTTAT 58.242 37.037 0.00 0.00 0.00 1.40
4177 8516 7.730332 TGCTCTATGATCTGGTCCTATCTTTTA 59.270 37.037 0.00 0.00 0.00 1.52
4178 8517 6.556495 TGCTCTATGATCTGGTCCTATCTTTT 59.444 38.462 0.00 0.00 0.00 2.27
4179 8518 6.080682 TGCTCTATGATCTGGTCCTATCTTT 58.919 40.000 0.00 0.00 0.00 2.52
4180 8519 5.649265 TGCTCTATGATCTGGTCCTATCTT 58.351 41.667 0.00 3.57 0.00 2.40
4181 8520 5.015072 TCTGCTCTATGATCTGGTCCTATCT 59.985 44.000 0.00 0.00 0.00 1.98
4182 8521 5.260424 TCTGCTCTATGATCTGGTCCTATC 58.740 45.833 0.00 0.00 0.00 2.08
4183 8522 5.268131 TCTGCTCTATGATCTGGTCCTAT 57.732 43.478 0.00 0.00 0.00 2.57
4184 8523 4.731313 TCTGCTCTATGATCTGGTCCTA 57.269 45.455 0.00 0.00 0.00 2.94
4185 8524 3.609256 TCTGCTCTATGATCTGGTCCT 57.391 47.619 0.00 0.00 0.00 3.85
4186 8525 5.016173 AGTATCTGCTCTATGATCTGGTCC 58.984 45.833 0.00 0.00 0.00 4.46
4187 8526 5.709631 TCAGTATCTGCTCTATGATCTGGTC 59.290 44.000 0.00 0.00 0.00 4.02
4188 8527 5.639139 TCAGTATCTGCTCTATGATCTGGT 58.361 41.667 0.00 0.00 0.00 4.00
4189 8528 6.458615 CGATCAGTATCTGCTCTATGATCTGG 60.459 46.154 10.29 0.00 40.41 3.86
4190 8529 6.315891 TCGATCAGTATCTGCTCTATGATCTG 59.684 42.308 10.29 5.44 40.41 2.90
4191 8530 6.413892 TCGATCAGTATCTGCTCTATGATCT 58.586 40.000 10.29 0.00 40.41 2.75
4192 8531 6.676237 TCGATCAGTATCTGCTCTATGATC 57.324 41.667 0.00 0.00 39.61 2.92
4193 8532 7.338957 TCAATCGATCAGTATCTGCTCTATGAT 59.661 37.037 0.00 0.00 0.00 2.45
4194 8533 6.656693 TCAATCGATCAGTATCTGCTCTATGA 59.343 38.462 0.00 0.00 0.00 2.15
4195 8534 6.850555 TCAATCGATCAGTATCTGCTCTATG 58.149 40.000 0.00 0.00 0.00 2.23
4196 8535 7.392953 TCTTCAATCGATCAGTATCTGCTCTAT 59.607 37.037 0.00 0.00 0.00 1.98
4197 8536 6.712547 TCTTCAATCGATCAGTATCTGCTCTA 59.287 38.462 0.00 0.00 0.00 2.43
4198 8537 5.534278 TCTTCAATCGATCAGTATCTGCTCT 59.466 40.000 0.00 0.00 0.00 4.09
4199 8538 5.767269 TCTTCAATCGATCAGTATCTGCTC 58.233 41.667 0.00 0.00 0.00 4.26
4200 8539 5.781210 TCTTCAATCGATCAGTATCTGCT 57.219 39.130 0.00 0.00 0.00 4.24
4201 8540 6.155136 TCATCTTCAATCGATCAGTATCTGC 58.845 40.000 0.00 0.00 0.00 4.26
4202 8541 7.866898 ACTTCATCTTCAATCGATCAGTATCTG 59.133 37.037 0.00 0.00 0.00 2.90
4203 8542 7.950512 ACTTCATCTTCAATCGATCAGTATCT 58.049 34.615 0.00 0.00 0.00 1.98
4204 8543 9.340695 CTACTTCATCTTCAATCGATCAGTATC 57.659 37.037 0.00 0.00 0.00 2.24
4205 8544 7.812191 GCTACTTCATCTTCAATCGATCAGTAT 59.188 37.037 0.00 0.00 0.00 2.12
4206 8545 7.142021 GCTACTTCATCTTCAATCGATCAGTA 58.858 38.462 0.00 0.00 0.00 2.74
4207 8546 5.982516 GCTACTTCATCTTCAATCGATCAGT 59.017 40.000 0.00 0.00 0.00 3.41
4208 8547 5.116831 CGCTACTTCATCTTCAATCGATCAG 59.883 44.000 0.00 0.00 0.00 2.90
4209 8548 4.978580 CGCTACTTCATCTTCAATCGATCA 59.021 41.667 0.00 0.00 0.00 2.92
4210 8549 4.384247 CCGCTACTTCATCTTCAATCGATC 59.616 45.833 0.00 0.00 0.00 3.69
4211 8550 4.202161 ACCGCTACTTCATCTTCAATCGAT 60.202 41.667 0.00 0.00 0.00 3.59
4212 8551 3.130516 ACCGCTACTTCATCTTCAATCGA 59.869 43.478 0.00 0.00 0.00 3.59
4213 8552 3.243877 CACCGCTACTTCATCTTCAATCG 59.756 47.826 0.00 0.00 0.00 3.34
4214 8553 3.557595 CCACCGCTACTTCATCTTCAATC 59.442 47.826 0.00 0.00 0.00 2.67
4215 8554 3.055094 ACCACCGCTACTTCATCTTCAAT 60.055 43.478 0.00 0.00 0.00 2.57
4216 8555 2.301870 ACCACCGCTACTTCATCTTCAA 59.698 45.455 0.00 0.00 0.00 2.69
4217 8556 1.899814 ACCACCGCTACTTCATCTTCA 59.100 47.619 0.00 0.00 0.00 3.02
4218 8557 2.673368 CAACCACCGCTACTTCATCTTC 59.327 50.000 0.00 0.00 0.00 2.87
4219 8558 2.038557 ACAACCACCGCTACTTCATCTT 59.961 45.455 0.00 0.00 0.00 2.40
4220 8559 1.623811 ACAACCACCGCTACTTCATCT 59.376 47.619 0.00 0.00 0.00 2.90
4221 8560 2.094762 ACAACCACCGCTACTTCATC 57.905 50.000 0.00 0.00 0.00 2.92
4222 8561 2.151202 CAACAACCACCGCTACTTCAT 58.849 47.619 0.00 0.00 0.00 2.57
4223 8562 1.588674 CAACAACCACCGCTACTTCA 58.411 50.000 0.00 0.00 0.00 3.02
4224 8563 0.237498 GCAACAACCACCGCTACTTC 59.763 55.000 0.00 0.00 0.00 3.01
4225 8564 0.464735 TGCAACAACCACCGCTACTT 60.465 50.000 0.00 0.00 0.00 2.24
4226 8565 0.250727 ATGCAACAACCACCGCTACT 60.251 50.000 0.00 0.00 0.00 2.57
4227 8566 0.109781 CATGCAACAACCACCGCTAC 60.110 55.000 0.00 0.00 0.00 3.58
4228 8567 1.861542 GCATGCAACAACCACCGCTA 61.862 55.000 14.21 0.00 0.00 4.26
4229 8568 3.041701 CATGCAACAACCACCGCT 58.958 55.556 0.00 0.00 0.00 5.52
4230 8569 2.734346 GCATGCAACAACCACCGC 60.734 61.111 14.21 0.00 0.00 5.68
4231 8570 2.198906 ATCGCATGCAACAACCACCG 62.199 55.000 19.57 0.00 0.00 4.94
4232 8571 0.733566 CATCGCATGCAACAACCACC 60.734 55.000 19.57 0.00 0.00 4.61
4233 8572 0.039256 ACATCGCATGCAACAACCAC 60.039 50.000 19.57 0.00 0.00 4.16
4234 8573 0.672889 AACATCGCATGCAACAACCA 59.327 45.000 19.57 0.00 0.00 3.67
4235 8574 2.627863 TAACATCGCATGCAACAACC 57.372 45.000 19.57 0.00 0.00 3.77


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.