Multiple sequence alignment - TraesCS2D01G002100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2D01G002100 chr2D 100.000 2600 0 0 1 2600 1658498 1661097 0.000000e+00 4802.0
1 TraesCS2D01G002100 chr2D 81.803 588 75 19 1059 1619 1637835 1638417 5.070000e-127 464.0
2 TraesCS2D01G002100 chr2D 88.750 160 15 3 1 160 1626973 1627129 2.640000e-45 193.0
3 TraesCS2D01G002100 chr2D 87.879 132 12 4 582 711 1636736 1636865 4.480000e-33 152.0
4 TraesCS2D01G002100 chr2D 88.095 84 4 4 408 487 1795379 1795298 7.660000e-16 95.3
5 TraesCS2D01G002100 chr2D 95.745 47 2 0 841 887 1637613 1637659 2.770000e-10 76.8
6 TraesCS2D01G002100 chr2D 90.000 60 5 1 841 900 5643402 5643344 2.770000e-10 76.8
7 TraesCS2D01G002100 chr2A 88.252 1064 62 30 906 1935 891922 892956 0.000000e+00 1214.0
8 TraesCS2D01G002100 chr2A 87.290 1070 68 32 906 1935 955007 956048 0.000000e+00 1160.0
9 TraesCS2D01G002100 chr2A 83.679 1060 85 43 630 1628 766336460 766337492 0.000000e+00 918.0
10 TraesCS2D01G002100 chr2A 88.782 731 43 20 970 1677 819958 820672 0.000000e+00 859.0
11 TraesCS2D01G002100 chr2A 83.622 635 79 13 955 1582 715390 716006 8.070000e-160 573.0
12 TraesCS2D01G002100 chr2A 85.915 497 58 9 1124 1614 747097 747587 1.070000e-143 520.0
13 TraesCS2D01G002100 chr2A 85.539 408 21 5 3 404 890892 891267 2.430000e-105 392.0
14 TraesCS2D01G002100 chr2A 85.539 408 21 5 3 404 952762 953137 2.430000e-105 392.0
15 TraesCS2D01G002100 chr2A 79.961 514 23 28 430 890 953215 953701 3.250000e-79 305.0
16 TraesCS2D01G002100 chr2A 83.430 344 14 12 430 750 891345 891668 1.970000e-71 279.0
17 TraesCS2D01G002100 chr2A 90.411 146 5 4 1876 2021 716205 716341 1.590000e-42 183.0
18 TraesCS2D01G002100 chr2A 87.898 157 8 3 757 905 891704 891857 9.560000e-40 174.0
19 TraesCS2D01G002100 chr2A 91.379 116 6 1 2485 2600 820873 820984 3.460000e-34 156.0
20 TraesCS2D01G002100 chr2A 91.379 116 6 1 2485 2600 893028 893139 3.460000e-34 156.0
21 TraesCS2D01G002100 chr2A 91.379 116 6 1 2485 2600 956117 956228 3.460000e-34 156.0
22 TraesCS2D01G002100 chr2A 85.185 108 4 5 406 503 1189594 1189489 1.650000e-17 100.0
23 TraesCS2D01G002100 chr2A 83.036 112 5 4 2489 2600 766340602 766340699 3.560000e-14 89.8
24 TraesCS2D01G002100 chr2A 87.342 79 2 1 808 886 746771 746841 1.660000e-12 84.2
25 TraesCS2D01G002100 chr5A 82.394 994 103 30 975 1960 617525979 617526908 0.000000e+00 800.0
26 TraesCS2D01G002100 chr5A 95.385 65 3 0 841 905 617520460 617520524 1.270000e-18 104.0
27 TraesCS2D01G002100 chr5D 96.815 471 14 1 2021 2491 330892292 330892761 0.000000e+00 785.0
28 TraesCS2D01G002100 chr3D 95.634 481 18 2 2014 2494 486913968 486913491 0.000000e+00 769.0
29 TraesCS2D01G002100 chr6D 95.541 471 18 3 2021 2491 135554919 135555386 0.000000e+00 750.0
30 TraesCS2D01G002100 chr6D 92.161 472 34 3 2021 2491 121348303 121348772 0.000000e+00 664.0
31 TraesCS2D01G002100 chr1B 94.480 471 22 2 2021 2491 671967468 671967934 0.000000e+00 723.0
32 TraesCS2D01G002100 chr3B 93.542 480 26 5 2021 2499 214992064 214991589 0.000000e+00 710.0
33 TraesCS2D01G002100 chr4B 91.702 470 36 2 2022 2491 627252281 627251815 0.000000e+00 649.0
34 TraesCS2D01G002100 chr6B 91.332 473 37 3 2020 2491 567391693 567391224 0.000000e+00 643.0
35 TraesCS2D01G002100 chr6B 89.583 48 3 2 581 628 4667281 4667326 2.790000e-05 60.2
36 TraesCS2D01G002100 chr3A 91.332 473 38 2 2019 2491 749456961 749456492 0.000000e+00 643.0
37 TraesCS2D01G002100 chr2B 84.524 504 65 6 1124 1619 10188034 10187536 1.080000e-133 486.0
38 TraesCS2D01G002100 chr2B 82.286 175 21 8 64 230 10192316 10192144 2.700000e-30 143.0
39 TraesCS2D01G002100 chr2B 87.500 80 2 1 808 887 10188327 10188256 4.610000e-13 86.1
40 TraesCS2D01G002100 chr2B 90.000 60 5 1 841 900 5712579 5712637 2.770000e-10 76.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2D01G002100 chr2D 1658498 1661097 2599 False 4802.000000 4802 100.000000 1 2600 1 chr2D.!!$F2 2599
1 TraesCS2D01G002100 chr2D 1636736 1638417 1681 False 230.933333 464 88.475667 582 1619 3 chr2D.!!$F3 1037
2 TraesCS2D01G002100 chr2A 819958 820984 1026 False 507.500000 859 90.080500 970 2600 2 chr2A.!!$F3 1630
3 TraesCS2D01G002100 chr2A 766336460 766340699 4239 False 503.900000 918 83.357500 630 2600 2 chr2A.!!$F6 1970
4 TraesCS2D01G002100 chr2A 952762 956228 3466 False 503.250000 1160 86.042250 3 2600 4 chr2A.!!$F5 2597
5 TraesCS2D01G002100 chr2A 890892 893139 2247 False 443.000000 1214 87.299600 3 2600 5 chr2A.!!$F4 2597
6 TraesCS2D01G002100 chr2A 715390 716341 951 False 378.000000 573 87.016500 955 2021 2 chr2A.!!$F1 1066
7 TraesCS2D01G002100 chr2A 746771 747587 816 False 302.100000 520 86.628500 808 1614 2 chr2A.!!$F2 806
8 TraesCS2D01G002100 chr5A 617525979 617526908 929 False 800.000000 800 82.394000 975 1960 1 chr5A.!!$F2 985
9 TraesCS2D01G002100 chr2B 10187536 10192316 4780 True 238.366667 486 84.770000 64 1619 3 chr2B.!!$R1 1555

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
408 790 0.041839 CGATGCATAGCAAAGGACGC 60.042 55.0 0.0 0.0 43.62 5.19 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2318 9632 0.03254 ACAACGACCGGAGTACCAAC 59.967 55.0 9.46 0.0 35.59 3.77 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
38 39 9.705290 AAAATCAAAATAAGTAATGGCGAAACT 57.295 25.926 0.00 0.00 0.00 2.66
49 50 2.846193 TGGCGAAACTATTAGATGCCC 58.154 47.619 13.53 1.04 40.25 5.36
126 128 0.321653 AGGAAGATGTGGTTCGTGCC 60.322 55.000 0.00 0.00 0.00 5.01
128 130 1.234821 GAAGATGTGGTTCGTGCCAA 58.765 50.000 2.55 0.00 40.68 4.52
221 231 2.348666 GCATCATGGACGTCAGTACAAC 59.651 50.000 18.91 0.00 45.71 3.32
262 363 4.320608 TCTGTTGGGTTTCTCAAATTGC 57.679 40.909 0.00 0.00 0.00 3.56
277 378 1.405872 ATTGCATCATGGACGCCAAT 58.594 45.000 2.68 0.00 36.95 3.16
279 380 1.308047 TGCATCATGGACGCCAATAC 58.692 50.000 2.68 0.00 36.95 1.89
281 382 1.675483 GCATCATGGACGCCAATACAA 59.325 47.619 2.68 0.00 36.95 2.41
282 383 2.098934 GCATCATGGACGCCAATACAAA 59.901 45.455 2.68 0.00 36.95 2.83
283 384 3.793129 GCATCATGGACGCCAATACAAAG 60.793 47.826 2.68 0.00 36.95 2.77
285 386 2.026729 TCATGGACGCCAATACAAAGGA 60.027 45.455 2.68 0.00 36.95 3.36
286 387 2.570415 TGGACGCCAATACAAAGGAA 57.430 45.000 0.00 0.00 0.00 3.36
365 746 6.206634 TCAGTAAAAACTGAAAGCTATGGTGG 59.793 38.462 5.78 0.00 43.03 4.61
389 771 2.474816 GCCATCTGATCAAGGACGTAC 58.525 52.381 11.56 0.00 0.00 3.67
391 773 2.357952 CCATCTGATCAAGGACGTACGA 59.642 50.000 24.41 0.00 0.00 3.43
396 778 2.100749 TGATCAAGGACGTACGATGCAT 59.899 45.455 24.41 0.00 0.00 3.96
404 786 2.201732 ACGTACGATGCATAGCAAAGG 58.798 47.619 24.41 1.82 43.62 3.11
405 787 2.159156 ACGTACGATGCATAGCAAAGGA 60.159 45.455 24.41 0.00 43.62 3.36
407 789 1.290203 ACGATGCATAGCAAAGGACG 58.710 50.000 6.73 1.95 43.62 4.79
408 790 0.041839 CGATGCATAGCAAAGGACGC 60.042 55.000 0.00 0.00 43.62 5.19
409 791 1.016627 GATGCATAGCAAAGGACGCA 58.983 50.000 0.00 0.00 43.62 5.24
412 794 0.734889 GCATAGCAAAGGACGCATGT 59.265 50.000 0.00 0.00 0.00 3.21
413 795 1.939934 GCATAGCAAAGGACGCATGTA 59.060 47.619 0.00 0.00 0.00 2.29
414 796 2.549754 GCATAGCAAAGGACGCATGTAT 59.450 45.455 0.00 0.00 0.00 2.29
417 799 3.492421 AGCAAAGGACGCATGTATTTG 57.508 42.857 0.00 0.81 37.66 2.32
418 800 1.919918 GCAAAGGACGCATGTATTTGC 59.080 47.619 14.62 14.62 45.57 3.68
419 801 2.415893 GCAAAGGACGCATGTATTTGCT 60.416 45.455 18.94 2.18 46.76 3.91
421 803 0.734889 AGGACGCATGTATTTGCTGC 59.265 50.000 0.00 0.00 40.54 5.25
425 807 1.940758 GCATGTATTTGCTGCGGCG 60.941 57.895 13.96 0.51 42.25 6.46
426 808 1.940758 CATGTATTTGCTGCGGCGC 60.941 57.895 27.44 27.44 42.25 6.53
427 809 2.114670 ATGTATTTGCTGCGGCGCT 61.115 52.632 33.26 14.16 42.25 5.92
517 1193 4.596585 AACCCGTGCCCCCAACAG 62.597 66.667 0.00 0.00 0.00 3.16
647 3006 7.254084 GGCACAAAATACTTGAAACTGAAACTG 60.254 37.037 0.00 0.00 0.00 3.16
649 3008 9.352784 CACAAAATACTTGAAACTGAAACTGAA 57.647 29.630 0.00 0.00 0.00 3.02
650 3009 9.921637 ACAAAATACTTGAAACTGAAACTGAAA 57.078 25.926 0.00 0.00 0.00 2.69
655 3014 7.923414 ACTTGAAACTGAAACTGAAACTAGT 57.077 32.000 0.00 0.00 0.00 2.57
658 3017 9.099454 CTTGAAACTGAAACTGAAACTAGTAGT 57.901 33.333 0.00 0.00 0.00 2.73
660 3019 9.525409 TGAAACTGAAACTGAAACTAGTAGTAC 57.475 33.333 2.50 2.10 0.00 2.73
735 4042 4.350368 TTGCCCCTTCCATTTTCTTTTC 57.650 40.909 0.00 0.00 0.00 2.29
740 4424 5.480422 GCCCCTTCCATTTTCTTTTCTTAGA 59.520 40.000 0.00 0.00 0.00 2.10
784 4493 2.349376 CATGTGTGGGTGGGCGTA 59.651 61.111 0.00 0.00 0.00 4.42
800 4509 1.269621 GCGTATTGCGAGGTCCAGTAT 60.270 52.381 0.00 0.00 44.77 2.12
803 4512 4.613944 CGTATTGCGAGGTCCAGTATTAA 58.386 43.478 0.00 0.00 44.77 1.40
804 4513 5.045215 CGTATTGCGAGGTCCAGTATTAAA 58.955 41.667 0.00 0.00 44.77 1.52
805 4514 5.521010 CGTATTGCGAGGTCCAGTATTAAAA 59.479 40.000 0.00 0.00 44.77 1.52
806 4515 6.036300 CGTATTGCGAGGTCCAGTATTAAAAA 59.964 38.462 0.00 0.00 44.77 1.94
929 5945 7.673082 TCATATGAGGAGAGAAGATAATGCAGA 59.327 37.037 0.00 0.00 0.00 4.26
930 5946 5.528043 TGAGGAGAGAAGATAATGCAGAC 57.472 43.478 0.00 0.00 0.00 3.51
931 5947 5.207354 TGAGGAGAGAAGATAATGCAGACT 58.793 41.667 0.00 0.00 0.00 3.24
933 5949 5.916318 AGGAGAGAAGATAATGCAGACTTG 58.084 41.667 0.00 0.00 0.00 3.16
934 5950 5.424895 AGGAGAGAAGATAATGCAGACTTGT 59.575 40.000 0.00 0.00 0.00 3.16
936 5952 6.291648 AGAGAAGATAATGCAGACTTGTCA 57.708 37.500 17.26 0.00 35.89 3.58
937 5953 6.887013 AGAGAAGATAATGCAGACTTGTCAT 58.113 36.000 17.26 0.67 35.89 3.06
938 5954 6.985645 AGAGAAGATAATGCAGACTTGTCATC 59.014 38.462 17.26 7.99 35.89 2.92
939 5955 6.054295 AGAAGATAATGCAGACTTGTCATCC 58.946 40.000 3.49 0.00 0.00 3.51
940 5956 4.375272 AGATAATGCAGACTTGTCATCCG 58.625 43.478 3.49 0.00 0.00 4.18
942 5958 3.610040 AATGCAGACTTGTCATCCGTA 57.390 42.857 3.49 0.00 0.00 4.02
944 5960 1.269166 GCAGACTTGTCATCCGTACG 58.731 55.000 8.69 8.69 0.00 3.67
946 5962 2.159476 GCAGACTTGTCATCCGTACGTA 60.159 50.000 15.21 0.00 0.00 3.57
947 5963 3.423571 CAGACTTGTCATCCGTACGTAC 58.576 50.000 15.90 15.90 0.00 3.67
949 5965 2.161855 ACTTGTCATCCGTACGTACCA 58.838 47.619 19.67 7.96 0.00 3.25
950 5966 2.163010 ACTTGTCATCCGTACGTACCAG 59.837 50.000 19.67 11.61 0.00 4.00
952 5968 1.469703 TGTCATCCGTACGTACCAGTG 59.530 52.381 19.67 14.56 0.00 3.66
953 5969 0.452987 TCATCCGTACGTACCAGTGC 59.547 55.000 19.67 0.00 0.00 4.40
990 6027 8.891720 TCTAGTCTAGAAAAGTAGAAATCGACC 58.108 37.037 7.14 0.00 30.70 4.79
1020 6061 3.793144 GCCGGTGAGCGCAAAGAG 61.793 66.667 11.47 0.00 0.00 2.85
1021 6062 3.121030 CCGGTGAGCGCAAAGAGG 61.121 66.667 11.47 3.12 0.00 3.69
1022 6063 3.793144 CGGTGAGCGCAAAGAGGC 61.793 66.667 11.47 0.00 0.00 4.70
1023 6064 2.359230 GGTGAGCGCAAAGAGGCT 60.359 61.111 11.47 0.00 43.42 4.58
1024 6065 1.079127 GGTGAGCGCAAAGAGGCTA 60.079 57.895 11.47 0.00 40.16 3.93
1025 6066 0.673644 GGTGAGCGCAAAGAGGCTAA 60.674 55.000 11.47 0.00 40.16 3.09
1040 6093 4.424566 TAACGCTGGCGGGTCGTC 62.425 66.667 18.99 0.00 44.69 4.20
1149 6259 2.359107 TCCAAGCTCTGCGGCAAG 60.359 61.111 3.44 6.00 34.17 4.01
1258 6368 2.261671 CCAAGGTCGGTGGAGACG 59.738 66.667 0.00 0.00 41.81 4.18
1269 6379 2.618053 GGTGGAGACGACTATGGTTTG 58.382 52.381 0.00 0.00 0.00 2.93
1356 6466 4.456806 GGCAACAAGACGGTGAGT 57.543 55.556 0.00 0.00 0.00 3.41
1383 6493 4.783621 GGCGAGCACTGCATCCCA 62.784 66.667 3.30 0.00 0.00 4.37
1387 6497 1.297689 GAGCACTGCATCCCAGACA 59.702 57.895 3.30 0.00 44.64 3.41
1444 6554 0.742635 TGCTTACATCGAATGCGGCA 60.743 50.000 4.58 4.58 38.28 5.69
1563 6679 3.511934 AGAAGAGTGAAGACTGCCGTAAT 59.488 43.478 0.00 0.00 30.16 1.89
1714 7037 5.893687 TGCGCATGTATTCATCTCATTTTT 58.106 33.333 5.66 0.00 31.15 1.94
1838 7184 6.627087 ACTTTTGGATGATCTCTAACCTCA 57.373 37.500 0.00 0.00 0.00 3.86
1909 7255 4.134563 TGTTGGCAGAGTTTCTTACCTTC 58.865 43.478 0.00 0.00 0.00 3.46
1966 7320 0.387622 TTTTCTCTTGCTGCATGCGC 60.388 50.000 22.12 22.12 46.63 6.09
1972 7326 3.457903 TTGCTGCATGCGCGCTATG 62.458 57.895 33.29 29.94 46.63 2.23
2051 7408 9.567776 TCGATAAAGGGCAATTTTATTATCTCA 57.432 29.630 0.00 0.00 32.42 3.27
2069 7426 5.885230 TCTCAAAATGTAGCATCAAGTGG 57.115 39.130 0.00 0.00 0.00 4.00
2070 7427 5.559770 TCTCAAAATGTAGCATCAAGTGGA 58.440 37.500 0.00 0.00 0.00 4.02
2071 7428 6.182627 TCTCAAAATGTAGCATCAAGTGGAT 58.817 36.000 0.00 0.00 36.39 3.41
2073 7430 7.280876 TCTCAAAATGTAGCATCAAGTGGATAC 59.719 37.037 0.00 0.00 33.95 2.24
2093 7455 7.485810 GGATACAAAACAATATGGGTAACACC 58.514 38.462 0.00 0.00 37.60 4.16
2103 7465 2.436115 GTAACACCCGGCCTCTGC 60.436 66.667 0.00 0.00 0.00 4.26
2104 7466 2.925706 TAACACCCGGCCTCTGCA 60.926 61.111 0.00 0.00 40.13 4.41
2106 7468 0.978667 TAACACCCGGCCTCTGCATA 60.979 55.000 0.00 0.00 40.13 3.14
2107 7469 1.847798 AACACCCGGCCTCTGCATAA 61.848 55.000 0.00 0.00 40.13 1.90
2108 7470 1.819632 CACCCGGCCTCTGCATAAC 60.820 63.158 0.00 0.00 40.13 1.89
2109 7471 1.995626 ACCCGGCCTCTGCATAACT 60.996 57.895 0.00 0.00 40.13 2.24
2110 7472 0.689745 ACCCGGCCTCTGCATAACTA 60.690 55.000 0.00 0.00 40.13 2.24
2111 7473 0.468226 CCCGGCCTCTGCATAACTAA 59.532 55.000 0.00 0.00 40.13 2.24
2113 7475 1.412710 CCGGCCTCTGCATAACTAAGA 59.587 52.381 0.00 0.00 40.13 2.10
2114 7476 2.037772 CCGGCCTCTGCATAACTAAGAT 59.962 50.000 0.00 0.00 40.13 2.40
2115 7477 3.062763 CGGCCTCTGCATAACTAAGATG 58.937 50.000 0.00 0.00 40.13 2.90
2124 7486 4.542662 CATAACTAAGATGCACACAGCC 57.457 45.455 0.00 0.00 44.83 4.85
2126 7488 2.566833 ACTAAGATGCACACAGCCAA 57.433 45.000 0.00 0.00 44.83 4.52
2128 7490 3.221771 ACTAAGATGCACACAGCCAAAA 58.778 40.909 0.00 0.00 44.83 2.44
2129 7491 2.514205 AAGATGCACACAGCCAAAAC 57.486 45.000 0.00 0.00 44.83 2.43
2130 7492 0.675633 AGATGCACACAGCCAAAACC 59.324 50.000 0.00 0.00 44.83 3.27
2132 7494 0.829333 ATGCACACAGCCAAAACCAA 59.171 45.000 0.00 0.00 44.83 3.67
2133 7495 0.610174 TGCACACAGCCAAAACCAAA 59.390 45.000 0.00 0.00 44.83 3.28
2134 7496 1.002430 TGCACACAGCCAAAACCAAAA 59.998 42.857 0.00 0.00 44.83 2.44
2137 7499 2.929398 CACACAGCCAAAACCAAAAGTC 59.071 45.455 0.00 0.00 0.00 3.01
2139 7501 3.189285 CACAGCCAAAACCAAAAGTCTG 58.811 45.455 0.00 0.00 0.00 3.51
2140 7502 3.096092 ACAGCCAAAACCAAAAGTCTGA 58.904 40.909 0.00 0.00 0.00 3.27
2141 7503 3.119137 ACAGCCAAAACCAAAAGTCTGAC 60.119 43.478 0.00 0.00 0.00 3.51
2142 7504 2.430694 AGCCAAAACCAAAAGTCTGACC 59.569 45.455 3.76 0.00 0.00 4.02
2143 7505 2.167487 GCCAAAACCAAAAGTCTGACCA 59.833 45.455 3.76 0.00 0.00 4.02
2144 7506 3.368948 GCCAAAACCAAAAGTCTGACCAA 60.369 43.478 3.76 0.00 0.00 3.67
2146 7508 5.241662 CCAAAACCAAAAGTCTGACCAAAA 58.758 37.500 3.76 0.00 0.00 2.44
2147 7509 5.703130 CCAAAACCAAAAGTCTGACCAAAAA 59.297 36.000 3.76 0.00 0.00 1.94
2170 7532 8.879342 AAAAATCATGAAATACAAACCGACAA 57.121 26.923 0.00 0.00 0.00 3.18
2171 7533 8.879342 AAAATCATGAAATACAAACCGACAAA 57.121 26.923 0.00 0.00 0.00 2.83
2172 7534 9.487790 AAAATCATGAAATACAAACCGACAAAT 57.512 25.926 0.00 0.00 0.00 2.32
2173 7535 8.687824 AATCATGAAATACAAACCGACAAATC 57.312 30.769 0.00 0.00 0.00 2.17
2184 7546 2.787723 CGACAAATCGGCAACAGTAG 57.212 50.000 0.00 0.00 44.99 2.57
2187 7549 3.326747 GACAAATCGGCAACAGTAGAGT 58.673 45.455 0.00 0.00 0.00 3.24
2189 7551 2.673368 CAAATCGGCAACAGTAGAGTCC 59.327 50.000 0.00 0.00 0.00 3.85
2192 7554 3.014304 TCGGCAACAGTAGAGTCCTAT 57.986 47.619 0.00 0.00 0.00 2.57
2193 7555 4.160642 TCGGCAACAGTAGAGTCCTATA 57.839 45.455 0.00 0.00 0.00 1.31
2194 7556 4.135306 TCGGCAACAGTAGAGTCCTATAG 58.865 47.826 0.00 0.00 0.00 1.31
2195 7557 4.135306 CGGCAACAGTAGAGTCCTATAGA 58.865 47.826 0.00 0.00 0.00 1.98
2196 7558 4.023878 CGGCAACAGTAGAGTCCTATAGAC 60.024 50.000 0.00 0.00 46.71 2.59
2208 7570 3.190953 GTCCTATAGACCGACACTATGCC 59.809 52.174 0.00 0.00 39.84 4.40
2209 7571 3.074094 TCCTATAGACCGACACTATGCCT 59.926 47.826 0.00 0.00 33.43 4.75
2210 7572 4.287845 TCCTATAGACCGACACTATGCCTA 59.712 45.833 0.00 0.00 33.43 3.93
2211 7573 5.045066 TCCTATAGACCGACACTATGCCTAT 60.045 44.000 0.00 0.00 33.43 2.57
2212 7574 5.066634 CCTATAGACCGACACTATGCCTATG 59.933 48.000 0.00 0.00 33.43 2.23
2213 7575 2.667470 AGACCGACACTATGCCTATGT 58.333 47.619 0.00 0.00 0.00 2.29
2214 7576 2.623889 AGACCGACACTATGCCTATGTC 59.376 50.000 0.00 0.00 39.50 3.06
2215 7577 2.361119 GACCGACACTATGCCTATGTCA 59.639 50.000 4.65 0.00 42.37 3.58
2217 7579 3.196901 ACCGACACTATGCCTATGTCAAA 59.803 43.478 4.65 0.00 42.37 2.69
2218 7580 3.804325 CCGACACTATGCCTATGTCAAAG 59.196 47.826 4.65 0.00 42.37 2.77
2230 9544 2.341846 TGTCAAAGAAGGTGGTGGAC 57.658 50.000 0.00 0.00 0.00 4.02
2231 9545 1.133915 TGTCAAAGAAGGTGGTGGACC 60.134 52.381 0.00 0.00 46.58 4.46
2255 9569 1.512926 CGTAGGTTATGCTGCCATCC 58.487 55.000 0.00 0.00 32.85 3.51
2256 9570 1.202639 CGTAGGTTATGCTGCCATCCA 60.203 52.381 0.00 0.00 32.85 3.41
2257 9571 2.550855 CGTAGGTTATGCTGCCATCCAT 60.551 50.000 0.00 0.00 32.85 3.41
2258 9572 1.991121 AGGTTATGCTGCCATCCATG 58.009 50.000 0.00 0.00 32.85 3.66
2259 9573 1.216175 AGGTTATGCTGCCATCCATGT 59.784 47.619 0.00 0.00 32.85 3.21
2260 9574 1.610522 GGTTATGCTGCCATCCATGTC 59.389 52.381 0.00 0.00 32.85 3.06
2261 9575 1.265095 GTTATGCTGCCATCCATGTCG 59.735 52.381 0.00 0.00 32.85 4.35
2262 9576 0.886043 TATGCTGCCATCCATGTCGC 60.886 55.000 0.00 0.00 32.85 5.19
2263 9577 3.945434 GCTGCCATCCATGTCGCG 61.945 66.667 0.00 0.00 0.00 5.87
2264 9578 2.202919 CTGCCATCCATGTCGCGA 60.203 61.111 3.71 3.71 0.00 5.87
2265 9579 1.815003 CTGCCATCCATGTCGCGAA 60.815 57.895 12.06 1.13 0.00 4.70
2266 9580 1.368345 CTGCCATCCATGTCGCGAAA 61.368 55.000 12.06 5.59 0.00 3.46
2267 9581 0.957888 TGCCATCCATGTCGCGAAAA 60.958 50.000 12.06 1.84 0.00 2.29
2283 9597 3.334413 AAAAACCTCCGTAGCCACC 57.666 52.632 0.00 0.00 0.00 4.61
2285 9599 0.036306 AAAACCTCCGTAGCCACCTG 59.964 55.000 0.00 0.00 0.00 4.00
2286 9600 2.465055 AAACCTCCGTAGCCACCTGC 62.465 60.000 0.00 0.00 41.71 4.85
2295 9609 3.512516 GCCACCTGCTCCAATCGC 61.513 66.667 0.00 0.00 36.87 4.58
2297 9611 2.434884 CACCTGCTCCAATCGCGT 60.435 61.111 5.77 0.00 0.00 6.01
2300 9614 1.153647 CCTGCTCCAATCGCGTACA 60.154 57.895 5.77 0.00 0.00 2.90
2302 9616 0.735978 CTGCTCCAATCGCGTACACA 60.736 55.000 5.77 0.00 0.00 3.72
2303 9617 1.011968 TGCTCCAATCGCGTACACAC 61.012 55.000 5.77 0.00 0.00 3.82
2304 9618 0.736325 GCTCCAATCGCGTACACACT 60.736 55.000 5.77 0.00 0.00 3.55
2306 9620 1.011968 TCCAATCGCGTACACACTGC 61.012 55.000 5.77 0.00 0.00 4.40
2307 9621 1.419922 CAATCGCGTACACACTGCC 59.580 57.895 5.77 0.00 0.00 4.85
2308 9622 1.014044 CAATCGCGTACACACTGCCT 61.014 55.000 5.77 0.00 0.00 4.75
2310 9624 1.014044 ATCGCGTACACACTGCCTTG 61.014 55.000 5.77 0.00 0.00 3.61
2311 9625 1.663388 CGCGTACACACTGCCTTGA 60.663 57.895 0.00 0.00 0.00 3.02
2312 9626 1.218875 CGCGTACACACTGCCTTGAA 61.219 55.000 0.00 0.00 0.00 2.69
2313 9627 0.234884 GCGTACACACTGCCTTGAAC 59.765 55.000 0.00 0.00 0.00 3.18
2314 9628 1.577468 CGTACACACTGCCTTGAACA 58.423 50.000 0.00 0.00 0.00 3.18
2320 9634 3.903208 ACTGCCTTGAACAGTGGTT 57.097 47.368 0.00 0.00 46.38 3.67
2321 9635 1.392589 ACTGCCTTGAACAGTGGTTG 58.607 50.000 0.00 0.00 46.38 3.77
2322 9636 0.670162 CTGCCTTGAACAGTGGTTGG 59.330 55.000 0.00 0.00 37.36 3.77
2323 9637 0.033601 TGCCTTGAACAGTGGTTGGT 60.034 50.000 0.00 0.00 37.36 3.67
2324 9638 1.213182 TGCCTTGAACAGTGGTTGGTA 59.787 47.619 0.00 0.00 37.36 3.25
2325 9639 1.607148 GCCTTGAACAGTGGTTGGTAC 59.393 52.381 0.00 0.00 37.36 3.34
2326 9640 2.748465 GCCTTGAACAGTGGTTGGTACT 60.748 50.000 0.00 0.00 37.36 2.73
2327 9641 3.139077 CCTTGAACAGTGGTTGGTACTC 58.861 50.000 0.00 0.00 37.36 2.59
2328 9642 2.922740 TGAACAGTGGTTGGTACTCC 57.077 50.000 0.00 0.00 37.36 3.85
2329 9643 1.069513 TGAACAGTGGTTGGTACTCCG 59.930 52.381 0.00 0.00 37.36 4.63
2332 9646 0.037605 CAGTGGTTGGTACTCCGGTC 60.038 60.000 0.00 0.00 36.30 4.79
2335 9649 1.114722 TGGTTGGTACTCCGGTCGTT 61.115 55.000 0.00 0.00 36.30 3.85
2338 9652 1.269448 GTTGGTACTCCGGTCGTTGTA 59.731 52.381 0.00 0.00 36.30 2.41
2339 9653 1.167851 TGGTACTCCGGTCGTTGTAG 58.832 55.000 0.00 0.00 36.30 2.74
2341 9655 0.523072 GTACTCCGGTCGTTGTAGCA 59.477 55.000 0.00 0.00 0.00 3.49
2345 9659 1.674441 CTCCGGTCGTTGTAGCATAGA 59.326 52.381 0.00 0.00 0.00 1.98
2346 9660 1.402968 TCCGGTCGTTGTAGCATAGAC 59.597 52.381 0.00 0.00 0.00 2.59
2347 9661 1.535437 CCGGTCGTTGTAGCATAGACC 60.535 57.143 0.00 3.07 45.68 3.85
2351 9665 3.782046 GTCGTTGTAGCATAGACCATGT 58.218 45.455 0.00 0.00 36.95 3.21
2352 9666 4.928601 GTCGTTGTAGCATAGACCATGTA 58.071 43.478 0.00 0.00 36.95 2.29
2353 9667 4.738740 GTCGTTGTAGCATAGACCATGTAC 59.261 45.833 0.00 0.00 36.95 2.90
2354 9668 3.729217 CGTTGTAGCATAGACCATGTACG 59.271 47.826 0.00 0.00 36.95 3.67
2355 9669 4.679662 GTTGTAGCATAGACCATGTACGT 58.320 43.478 0.00 0.00 36.95 3.57
2356 9670 5.504501 CGTTGTAGCATAGACCATGTACGTA 60.505 44.000 0.00 0.00 36.95 3.57
2357 9671 5.684550 TGTAGCATAGACCATGTACGTAG 57.315 43.478 0.00 0.00 36.95 3.51
2359 9673 4.569761 AGCATAGACCATGTACGTAGTG 57.430 45.455 0.00 0.00 36.64 2.74
2360 9674 4.204799 AGCATAGACCATGTACGTAGTGA 58.795 43.478 0.00 0.00 36.64 3.41
2361 9675 4.276183 AGCATAGACCATGTACGTAGTGAG 59.724 45.833 0.00 0.00 36.64 3.51
2362 9676 4.036498 GCATAGACCATGTACGTAGTGAGT 59.964 45.833 0.00 0.00 36.64 3.41
2364 9678 3.418995 AGACCATGTACGTAGTGAGTGT 58.581 45.455 0.00 0.00 45.73 3.55
2365 9679 3.190744 AGACCATGTACGTAGTGAGTGTG 59.809 47.826 0.00 0.00 45.73 3.82
2366 9680 2.889045 ACCATGTACGTAGTGAGTGTGT 59.111 45.455 0.00 0.00 45.73 3.72
2367 9681 4.074259 ACCATGTACGTAGTGAGTGTGTA 58.926 43.478 0.00 0.00 45.73 2.90
2369 9683 4.083164 CCATGTACGTAGTGAGTGTGTACA 60.083 45.833 0.00 6.04 46.40 2.90
2371 9685 3.250762 TGTACGTAGTGAGTGTGTACACC 59.749 47.826 22.91 13.98 45.20 4.16
2372 9686 1.265095 ACGTAGTGAGTGTGTACACCG 59.735 52.381 22.91 17.40 44.27 4.94
2373 9687 3.954836 ACGTAGTGAGTGTGTACACCGG 61.955 54.545 22.91 0.00 44.27 5.28
2374 9688 6.831602 TACGTAGTGAGTGTGTACACCGGA 62.832 50.000 22.91 10.39 45.20 5.14
2383 9697 3.494251 GTGTGTACACCGGAAAATAACGT 59.506 43.478 22.91 0.00 40.85 3.99
2389 9703 4.240096 ACACCGGAAAATAACGTGTAGAG 58.760 43.478 9.46 0.00 0.00 2.43
2390 9704 3.615496 CACCGGAAAATAACGTGTAGAGG 59.385 47.826 9.46 0.00 0.00 3.69
2391 9705 3.511146 ACCGGAAAATAACGTGTAGAGGA 59.489 43.478 9.46 0.00 0.00 3.71
2392 9706 4.110482 CCGGAAAATAACGTGTAGAGGAG 58.890 47.826 0.00 0.00 0.00 3.69
2393 9707 4.142315 CCGGAAAATAACGTGTAGAGGAGA 60.142 45.833 0.00 0.00 0.00 3.71
2394 9708 5.404946 CGGAAAATAACGTGTAGAGGAGAA 58.595 41.667 0.00 0.00 0.00 2.87
2395 9709 5.515626 CGGAAAATAACGTGTAGAGGAGAAG 59.484 44.000 0.00 0.00 0.00 2.85
2396 9710 5.291371 GGAAAATAACGTGTAGAGGAGAAGC 59.709 44.000 0.00 0.00 0.00 3.86
2397 9711 5.401531 AAATAACGTGTAGAGGAGAAGCA 57.598 39.130 0.00 0.00 0.00 3.91
2399 9713 3.963428 AACGTGTAGAGGAGAAGCATT 57.037 42.857 0.00 0.00 0.00 3.56
2400 9714 3.963428 ACGTGTAGAGGAGAAGCATTT 57.037 42.857 0.00 0.00 0.00 2.32
2401 9715 4.273148 ACGTGTAGAGGAGAAGCATTTT 57.727 40.909 0.00 0.00 0.00 1.82
2402 9716 4.642429 ACGTGTAGAGGAGAAGCATTTTT 58.358 39.130 0.00 0.00 0.00 1.94
2403 9717 4.452455 ACGTGTAGAGGAGAAGCATTTTTG 59.548 41.667 0.00 0.00 0.00 2.44
2404 9718 4.452455 CGTGTAGAGGAGAAGCATTTTTGT 59.548 41.667 0.00 0.00 0.00 2.83
2405 9719 5.389935 CGTGTAGAGGAGAAGCATTTTTGTC 60.390 44.000 0.00 0.00 0.00 3.18
2406 9720 5.470098 GTGTAGAGGAGAAGCATTTTTGTCA 59.530 40.000 0.00 0.00 0.00 3.58
2407 9721 6.150140 GTGTAGAGGAGAAGCATTTTTGTCAT 59.850 38.462 0.00 0.00 0.00 3.06
2408 9722 6.716628 TGTAGAGGAGAAGCATTTTTGTCATT 59.283 34.615 0.00 0.00 0.00 2.57
2411 9725 8.181904 AGAGGAGAAGCATTTTTGTCATTAAA 57.818 30.769 0.00 0.00 0.00 1.52
2413 9727 9.260002 GAGGAGAAGCATTTTTGTCATTAAAAA 57.740 29.630 0.00 0.00 41.94 1.94
2414 9728 9.783081 AGGAGAAGCATTTTTGTCATTAAAAAT 57.217 25.926 0.00 0.00 45.92 1.82
2434 9748 8.911247 AAAAATCAAATCGTTTCTACATAGCC 57.089 30.769 0.00 0.00 0.00 3.93
2437 9751 7.624360 ATCAAATCGTTTCTACATAGCCAAA 57.376 32.000 0.00 0.00 0.00 3.28
2438 9752 7.072177 TCAAATCGTTTCTACATAGCCAAAG 57.928 36.000 0.00 0.00 0.00 2.77
2441 9755 2.927477 CGTTTCTACATAGCCAAAGCGA 59.073 45.455 0.00 0.00 46.67 4.93
2443 9757 4.318121 CGTTTCTACATAGCCAAAGCGATC 60.318 45.833 0.00 0.00 46.67 3.69
2444 9758 4.400529 TTCTACATAGCCAAAGCGATCA 57.599 40.909 0.00 0.00 46.67 2.92
2445 9759 4.400529 TCTACATAGCCAAAGCGATCAA 57.599 40.909 0.00 0.00 46.67 2.57
2448 9762 4.989279 ACATAGCCAAAGCGATCAAATT 57.011 36.364 0.00 0.00 46.67 1.82
2449 9763 6.989759 TCTACATAGCCAAAGCGATCAAATTA 59.010 34.615 0.00 0.00 46.67 1.40
2450 9764 6.449635 ACATAGCCAAAGCGATCAAATTAA 57.550 33.333 0.00 0.00 46.67 1.40
2451 9765 6.498304 ACATAGCCAAAGCGATCAAATTAAG 58.502 36.000 0.00 0.00 46.67 1.85
2452 9766 6.318648 ACATAGCCAAAGCGATCAAATTAAGA 59.681 34.615 0.00 0.00 46.67 2.10
2453 9767 4.986622 AGCCAAAGCGATCAAATTAAGAC 58.013 39.130 0.00 0.00 46.67 3.01
2454 9768 4.458989 AGCCAAAGCGATCAAATTAAGACA 59.541 37.500 0.00 0.00 46.67 3.41
2456 9770 6.318648 AGCCAAAGCGATCAAATTAAGACATA 59.681 34.615 0.00 0.00 46.67 2.29
2457 9771 6.414987 GCCAAAGCGATCAAATTAAGACATAC 59.585 38.462 0.00 0.00 0.00 2.39
2458 9772 6.628856 CCAAAGCGATCAAATTAAGACATACG 59.371 38.462 0.00 0.00 0.00 3.06
2460 9774 5.050490 AGCGATCAAATTAAGACATACGCT 58.950 37.500 0.00 0.00 45.77 5.07
2461 9775 5.366752 GCGATCAAATTAAGACATACGCTC 58.633 41.667 0.00 0.00 39.38 5.03
2462 9776 5.612709 GCGATCAAATTAAGACATACGCTCC 60.613 44.000 0.00 0.00 39.38 4.70
2463 9777 5.107453 CGATCAAATTAAGACATACGCTCCC 60.107 44.000 0.00 0.00 0.00 4.30
2464 9778 5.092554 TCAAATTAAGACATACGCTCCCA 57.907 39.130 0.00 0.00 0.00 4.37
2465 9779 5.680619 TCAAATTAAGACATACGCTCCCAT 58.319 37.500 0.00 0.00 0.00 4.00
2466 9780 5.758296 TCAAATTAAGACATACGCTCCCATC 59.242 40.000 0.00 0.00 0.00 3.51
2469 9783 1.794714 AGACATACGCTCCCATCCTT 58.205 50.000 0.00 0.00 0.00 3.36
2470 9784 2.958818 AGACATACGCTCCCATCCTTA 58.041 47.619 0.00 0.00 0.00 2.69
2471 9785 3.511477 AGACATACGCTCCCATCCTTAT 58.489 45.455 0.00 0.00 0.00 1.73
2473 9787 5.084519 AGACATACGCTCCCATCCTTATTA 58.915 41.667 0.00 0.00 0.00 0.98
2474 9788 5.186021 AGACATACGCTCCCATCCTTATTAG 59.814 44.000 0.00 0.00 0.00 1.73
2475 9789 2.841442 ACGCTCCCATCCTTATTAGC 57.159 50.000 0.00 0.00 0.00 3.09
2478 9792 2.548067 CGCTCCCATCCTTATTAGCGTT 60.548 50.000 6.38 0.00 45.60 4.84
2482 9796 5.105567 TCCCATCCTTATTAGCGTTTTGA 57.894 39.130 0.00 0.00 0.00 2.69
2483 9797 5.502079 TCCCATCCTTATTAGCGTTTTGAA 58.498 37.500 0.00 0.00 0.00 2.69
2487 9943 6.540914 CCATCCTTATTAGCGTTTTGAACCTA 59.459 38.462 0.00 0.00 0.00 3.08
2524 9980 4.097741 TCTTGTGACCTGTGAAATGGTTTG 59.902 41.667 0.00 0.00 36.59 2.93
2529 9985 6.097554 TGTGACCTGTGAAATGGTTTGTTTAT 59.902 34.615 0.00 0.00 36.59 1.40
2530 9986 6.983890 GTGACCTGTGAAATGGTTTGTTTATT 59.016 34.615 0.00 0.00 36.59 1.40
2531 9987 7.494298 GTGACCTGTGAAATGGTTTGTTTATTT 59.506 33.333 0.00 0.00 36.59 1.40
2532 9988 8.696374 TGACCTGTGAAATGGTTTGTTTATTTA 58.304 29.630 0.00 0.00 36.59 1.40
2533 9989 9.535878 GACCTGTGAAATGGTTTGTTTATTTAA 57.464 29.630 0.00 0.00 36.59 1.52
2573 10032 3.439154 TGAATTGAGAGAGCTGAGACCT 58.561 45.455 0.00 0.00 0.00 3.85
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
29 30 2.805295 CGGGCATCTAATAGTTTCGCCA 60.805 50.000 0.00 0.00 39.87 5.69
30 31 1.798813 CGGGCATCTAATAGTTTCGCC 59.201 52.381 0.00 0.00 37.33 5.54
31 32 2.731976 CTCGGGCATCTAATAGTTTCGC 59.268 50.000 0.00 0.00 0.00 4.70
32 33 4.238761 TCTCGGGCATCTAATAGTTTCG 57.761 45.455 0.00 0.00 0.00 3.46
38 39 5.762179 ATTTGGATCTCGGGCATCTAATA 57.238 39.130 0.00 0.00 0.00 0.98
49 50 6.645003 TCACCGTGATATTTATTTGGATCTCG 59.355 38.462 0.00 0.00 35.92 4.04
190 196 4.127171 ACGTCCATGATGCATTTACTACC 58.873 43.478 0.00 0.00 0.00 3.18
250 351 4.735985 CGTCCATGATGCAATTTGAGAAA 58.264 39.130 0.00 0.00 0.00 2.52
262 363 3.243168 CCTTTGTATTGGCGTCCATGATG 60.243 47.826 0.00 0.00 31.53 3.07
277 378 5.475719 CCAAGTCTACGATGTTCCTTTGTA 58.524 41.667 0.00 0.00 0.00 2.41
279 380 3.684788 CCCAAGTCTACGATGTTCCTTTG 59.315 47.826 0.00 0.00 0.00 2.77
281 382 2.904434 ACCCAAGTCTACGATGTTCCTT 59.096 45.455 0.00 0.00 0.00 3.36
282 383 2.537143 ACCCAAGTCTACGATGTTCCT 58.463 47.619 0.00 0.00 0.00 3.36
283 384 3.329929 AACCCAAGTCTACGATGTTCC 57.670 47.619 0.00 0.00 0.00 3.62
285 386 4.618920 AGAAACCCAAGTCTACGATGTT 57.381 40.909 0.00 0.00 0.00 2.71
286 387 5.733620 TTAGAAACCCAAGTCTACGATGT 57.266 39.130 0.00 0.00 0.00 3.06
365 746 2.474816 GTCCTTGATCAGATGGCGTAC 58.525 52.381 0.00 0.00 0.00 3.67
389 771 0.041839 GCGTCCTTTGCTATGCATCG 60.042 55.000 0.19 0.00 38.76 3.84
391 773 1.335810 CATGCGTCCTTTGCTATGCAT 59.664 47.619 3.79 3.79 46.59 3.96
396 778 3.181501 GCAAATACATGCGTCCTTTGCTA 60.182 43.478 16.47 0.00 43.61 3.49
407 789 1.940758 CGCCGCAGCAAATACATGC 60.941 57.895 0.00 0.00 46.78 4.06
408 790 1.940758 GCGCCGCAGCAAATACATG 60.941 57.895 3.15 0.00 39.83 3.21
409 791 1.656818 AAGCGCCGCAGCAAATACAT 61.657 50.000 13.36 0.00 39.83 2.29
412 794 2.484662 CAAGCGCCGCAGCAAATA 59.515 55.556 13.36 0.00 39.83 1.40
413 795 4.424566 CCAAGCGCCGCAGCAAAT 62.425 61.111 13.36 0.00 39.83 2.32
418 800 3.267860 GAGATCCAAGCGCCGCAG 61.268 66.667 13.36 2.67 0.00 5.18
419 801 3.723235 GAGAGATCCAAGCGCCGCA 62.723 63.158 13.36 0.00 0.00 5.69
421 803 2.279784 GGAGAGATCCAAGCGCCG 60.280 66.667 2.29 0.00 0.00 6.46
422 804 1.221840 TTGGAGAGATCCAAGCGCC 59.778 57.895 2.29 0.00 44.11 6.53
423 805 4.941609 TTGGAGAGATCCAAGCGC 57.058 55.556 0.00 0.00 44.11 5.92
427 809 6.487828 ACAAATTCATCTTGGAGAGATCCAA 58.512 36.000 9.26 9.26 43.32 3.53
450 1105 0.662085 TGTGCCGTCGGGTTAAAAAC 59.338 50.000 14.38 0.00 34.97 2.43
511 1184 7.386573 TGACATTACACTACATTGTACTGTTGG 59.613 37.037 12.41 7.09 42.64 3.77
517 1193 7.596749 AAGCTGACATTACACTACATTGTAC 57.403 36.000 0.00 0.00 31.53 2.90
647 3006 8.788409 AACAAGTTGTACGTACTACTAGTTTC 57.212 34.615 32.80 11.93 40.44 2.78
649 3008 9.237846 GAAAACAAGTTGTACGTACTACTAGTT 57.762 33.333 32.80 24.78 40.44 2.24
650 3009 8.624776 AGAAAACAAGTTGTACGTACTACTAGT 58.375 33.333 32.80 20.88 40.44 2.57
651 3010 8.899776 CAGAAAACAAGTTGTACGTACTACTAG 58.100 37.037 32.80 19.70 40.44 2.57
652 3011 8.620416 TCAGAAAACAAGTTGTACGTACTACTA 58.380 33.333 32.80 17.38 40.44 1.82
653 3012 7.433425 GTCAGAAAACAAGTTGTACGTACTACT 59.567 37.037 29.20 29.20 42.50 2.57
654 3013 7.306225 GGTCAGAAAACAAGTTGTACGTACTAC 60.306 40.741 26.22 26.22 33.19 2.73
655 3014 6.697019 GGTCAGAAAACAAGTTGTACGTACTA 59.303 38.462 25.12 16.12 0.00 1.82
658 3017 5.417811 TGGTCAGAAAACAAGTTGTACGTA 58.582 37.500 9.37 0.00 0.00 3.57
660 3019 4.868450 TGGTCAGAAAACAAGTTGTACG 57.132 40.909 9.37 0.00 0.00 3.67
735 4042 9.213799 GGTGCATAATCCTTTTCTCTATCTAAG 57.786 37.037 0.00 0.00 0.00 2.18
740 4424 6.266131 TGGGTGCATAATCCTTTTCTCTAT 57.734 37.500 0.00 0.00 0.00 1.98
755 4464 3.130264 ACACATGTGTTGGGTGCAT 57.870 47.368 25.76 0.00 41.66 3.96
779 4488 1.883084 CTGGACCTCGCAATACGCC 60.883 63.158 0.00 0.00 43.23 5.68
804 4513 1.881591 AATTGGCGCATGCACTTTTT 58.118 40.000 19.57 2.37 45.35 1.94
805 4514 1.881591 AAATTGGCGCATGCACTTTT 58.118 40.000 19.57 10.79 45.35 2.27
806 4515 2.739885 TAAATTGGCGCATGCACTTT 57.260 40.000 19.57 11.05 45.35 2.66
929 5945 2.161855 TGGTACGTACGGATGACAAGT 58.838 47.619 21.06 0.00 0.00 3.16
930 5946 2.163010 ACTGGTACGTACGGATGACAAG 59.837 50.000 21.06 15.64 0.00 3.16
931 5947 2.095110 CACTGGTACGTACGGATGACAA 60.095 50.000 21.06 4.63 0.00 3.18
933 5949 1.796617 GCACTGGTACGTACGGATGAC 60.797 57.143 21.06 11.29 0.00 3.06
934 5950 0.452987 GCACTGGTACGTACGGATGA 59.547 55.000 21.06 0.33 0.00 2.92
936 5952 0.966875 TGGCACTGGTACGTACGGAT 60.967 55.000 21.06 1.34 0.00 4.18
937 5953 1.177895 TTGGCACTGGTACGTACGGA 61.178 55.000 21.06 8.59 0.00 4.69
938 5954 0.734942 CTTGGCACTGGTACGTACGG 60.735 60.000 21.06 15.81 0.00 4.02
939 5955 1.349259 GCTTGGCACTGGTACGTACG 61.349 60.000 18.98 15.01 0.00 3.67
940 5956 1.017701 GGCTTGGCACTGGTACGTAC 61.018 60.000 17.56 17.56 0.00 3.67
942 5958 2.032071 GGCTTGGCACTGGTACGT 59.968 61.111 0.00 0.00 0.00 3.57
944 5960 0.322456 TGATGGCTTGGCACTGGTAC 60.322 55.000 0.00 0.00 0.00 3.34
946 5962 0.682209 GATGATGGCTTGGCACTGGT 60.682 55.000 0.00 0.00 0.00 4.00
947 5963 0.395311 AGATGATGGCTTGGCACTGG 60.395 55.000 0.00 0.00 0.00 4.00
949 5965 1.842562 ACTAGATGATGGCTTGGCACT 59.157 47.619 0.00 0.00 0.00 4.40
950 5966 2.158842 AGACTAGATGATGGCTTGGCAC 60.159 50.000 0.00 0.00 0.00 5.01
952 5968 2.926778 AGACTAGATGATGGCTTGGC 57.073 50.000 0.00 0.00 0.00 4.52
953 5969 5.798125 TTCTAGACTAGATGATGGCTTGG 57.202 43.478 12.98 0.00 34.22 3.61
990 6027 1.153369 ACCGGCCATCGATCTTGTG 60.153 57.895 0.00 0.00 42.43 3.33
1017 6058 4.148825 CCGCCAGCGTTAGCCTCT 62.149 66.667 11.55 0.00 46.67 3.69
1022 6063 4.430765 ACGACCCGCCAGCGTTAG 62.431 66.667 11.55 1.98 34.12 2.34
1023 6064 4.424566 GACGACCCGCCAGCGTTA 62.425 66.667 11.55 0.00 38.51 3.18
1258 6368 3.195661 CCGTAGAAGCCAAACCATAGTC 58.804 50.000 0.00 0.00 0.00 2.59
1269 6379 2.824489 GGCCTTGCCGTAGAAGCC 60.824 66.667 0.00 0.00 39.62 4.35
1383 6493 2.583319 CATGCCGCGTCGATGTCT 60.583 61.111 4.92 0.00 0.00 3.41
1387 6497 3.566853 CTTGCATGCCGCGTCGAT 61.567 61.111 16.68 0.00 46.97 3.59
1444 6554 2.202623 GAATCTCGACGCCGCACT 60.203 61.111 0.00 0.00 35.37 4.40
1486 6596 4.935352 TTTGCTGTATGGCTTTCTTGTT 57.065 36.364 0.00 0.00 0.00 2.83
1563 6679 4.025040 ACTCTTGTTGAGGATGCATTCA 57.975 40.909 7.96 1.92 46.72 2.57
1816 7162 6.314896 GTGTGAGGTTAGAGATCATCCAAAAG 59.685 42.308 0.00 0.00 0.00 2.27
1837 7183 4.404507 AGCTAGCAAAATGTAACGTGTG 57.595 40.909 18.83 0.00 0.00 3.82
1838 7184 5.779806 CTAGCTAGCAAAATGTAACGTGT 57.220 39.130 18.83 0.00 0.00 4.49
1867 7213 7.409697 CCAACATGCAAACACATCTATAGTAC 58.590 38.462 0.00 0.00 0.00 2.73
1868 7214 6.038161 GCCAACATGCAAACACATCTATAGTA 59.962 38.462 0.00 0.00 0.00 1.82
1869 7215 5.163622 GCCAACATGCAAACACATCTATAGT 60.164 40.000 0.00 0.00 0.00 2.12
1966 7320 4.038763 TGATTGTAACCTCCCTACATAGCG 59.961 45.833 0.00 0.00 0.00 4.26
1972 7326 4.772886 ACCATGATTGTAACCTCCCTAC 57.227 45.455 0.00 0.00 0.00 3.18
2025 7382 9.567776 TGAGATAATAAAATTGCCCTTTATCGA 57.432 29.630 0.00 0.00 33.43 3.59
2043 7400 8.627403 CCACTTGATGCTACATTTTGAGATAAT 58.373 33.333 0.00 0.00 0.00 1.28
2044 7401 7.828717 TCCACTTGATGCTACATTTTGAGATAA 59.171 33.333 0.00 0.00 0.00 1.75
2046 7403 6.182627 TCCACTTGATGCTACATTTTGAGAT 58.817 36.000 0.00 0.00 0.00 2.75
2048 7405 5.885230 TCCACTTGATGCTACATTTTGAG 57.115 39.130 0.00 0.00 0.00 3.02
2049 7406 6.883756 TGTATCCACTTGATGCTACATTTTGA 59.116 34.615 0.00 0.00 37.04 2.69
2050 7407 7.087409 TGTATCCACTTGATGCTACATTTTG 57.913 36.000 0.00 0.00 37.04 2.44
2051 7408 7.701539 TTGTATCCACTTGATGCTACATTTT 57.298 32.000 0.00 0.00 37.04 1.82
2052 7409 7.701539 TTTGTATCCACTTGATGCTACATTT 57.298 32.000 0.00 0.00 37.04 2.32
2053 7410 7.176515 TGTTTTGTATCCACTTGATGCTACATT 59.823 33.333 0.00 0.00 37.04 2.71
2054 7411 6.658816 TGTTTTGTATCCACTTGATGCTACAT 59.341 34.615 0.00 0.00 37.04 2.29
2056 7413 6.494893 TGTTTTGTATCCACTTGATGCTAC 57.505 37.500 0.00 0.00 37.04 3.58
2057 7414 7.701539 ATTGTTTTGTATCCACTTGATGCTA 57.298 32.000 0.00 0.00 37.04 3.49
2058 7415 6.594788 ATTGTTTTGTATCCACTTGATGCT 57.405 33.333 0.00 0.00 37.04 3.79
2059 7416 7.436080 CCATATTGTTTTGTATCCACTTGATGC 59.564 37.037 0.00 0.00 36.68 3.91
2060 7417 7.922278 CCCATATTGTTTTGTATCCACTTGATG 59.078 37.037 0.00 0.00 34.76 3.07
2061 7418 7.619302 ACCCATATTGTTTTGTATCCACTTGAT 59.381 33.333 0.00 0.00 37.49 2.57
2062 7419 6.951198 ACCCATATTGTTTTGTATCCACTTGA 59.049 34.615 0.00 0.00 0.00 3.02
2063 7420 7.169158 ACCCATATTGTTTTGTATCCACTTG 57.831 36.000 0.00 0.00 0.00 3.16
2064 7421 8.745590 GTTACCCATATTGTTTTGTATCCACTT 58.254 33.333 0.00 0.00 0.00 3.16
2065 7422 7.891183 TGTTACCCATATTGTTTTGTATCCACT 59.109 33.333 0.00 0.00 0.00 4.00
2088 7450 1.847798 TTATGCAGAGGCCGGGTGTT 61.848 55.000 2.18 0.00 40.13 3.32
2092 7454 0.468226 TTAGTTATGCAGAGGCCGGG 59.532 55.000 2.18 0.00 40.13 5.73
2093 7455 1.412710 TCTTAGTTATGCAGAGGCCGG 59.587 52.381 0.00 0.00 40.13 6.13
2094 7456 2.890808 TCTTAGTTATGCAGAGGCCG 57.109 50.000 0.00 0.00 40.13 6.13
2103 7465 3.940852 TGGCTGTGTGCATCTTAGTTATG 59.059 43.478 0.00 0.00 45.15 1.90
2104 7466 4.220693 TGGCTGTGTGCATCTTAGTTAT 57.779 40.909 0.00 0.00 45.15 1.89
2106 7468 2.566833 TGGCTGTGTGCATCTTAGTT 57.433 45.000 0.00 0.00 45.15 2.24
2107 7469 2.566833 TTGGCTGTGTGCATCTTAGT 57.433 45.000 0.00 0.00 45.15 2.24
2108 7470 3.568538 GTTTTGGCTGTGTGCATCTTAG 58.431 45.455 0.00 0.00 45.15 2.18
2109 7471 2.295909 GGTTTTGGCTGTGTGCATCTTA 59.704 45.455 0.00 0.00 45.15 2.10
2110 7472 1.069049 GGTTTTGGCTGTGTGCATCTT 59.931 47.619 0.00 0.00 45.15 2.40
2111 7473 0.675633 GGTTTTGGCTGTGTGCATCT 59.324 50.000 0.00 0.00 45.15 2.90
2113 7475 0.829333 TTGGTTTTGGCTGTGTGCAT 59.171 45.000 0.00 0.00 45.15 3.96
2114 7476 0.610174 TTTGGTTTTGGCTGTGTGCA 59.390 45.000 0.00 0.00 45.15 4.57
2115 7477 1.665169 CTTTTGGTTTTGGCTGTGTGC 59.335 47.619 0.00 0.00 41.94 4.57
2116 7478 2.929398 GACTTTTGGTTTTGGCTGTGTG 59.071 45.455 0.00 0.00 0.00 3.82
2117 7479 2.831526 AGACTTTTGGTTTTGGCTGTGT 59.168 40.909 0.00 0.00 0.00 3.72
2118 7480 3.119173 TCAGACTTTTGGTTTTGGCTGTG 60.119 43.478 0.00 0.00 0.00 3.66
2119 7481 3.096092 TCAGACTTTTGGTTTTGGCTGT 58.904 40.909 0.00 0.00 0.00 4.40
2120 7482 3.447742 GTCAGACTTTTGGTTTTGGCTG 58.552 45.455 0.00 0.00 0.00 4.85
2121 7483 2.430694 GGTCAGACTTTTGGTTTTGGCT 59.569 45.455 0.00 0.00 0.00 4.75
2122 7484 2.167487 TGGTCAGACTTTTGGTTTTGGC 59.833 45.455 0.00 0.00 0.00 4.52
2123 7485 4.464069 TTGGTCAGACTTTTGGTTTTGG 57.536 40.909 0.00 0.00 0.00 3.28
2124 7486 6.793492 TTTTTGGTCAGACTTTTGGTTTTG 57.207 33.333 0.00 0.00 0.00 2.44
2146 7508 8.879342 TTTGTCGGTTTGTATTTCATGATTTT 57.121 26.923 0.00 0.00 0.00 1.82
2147 7509 9.139174 GATTTGTCGGTTTGTATTTCATGATTT 57.861 29.630 0.00 0.00 0.00 2.17
2149 7511 6.966632 CGATTTGTCGGTTTGTATTTCATGAT 59.033 34.615 0.00 0.00 0.00 2.45
2150 7512 6.310960 CGATTTGTCGGTTTGTATTTCATGA 58.689 36.000 0.00 0.00 0.00 3.07
2166 7528 3.326747 ACTCTACTGTTGCCGATTTGTC 58.673 45.455 0.00 0.00 0.00 3.18
2167 7529 3.326747 GACTCTACTGTTGCCGATTTGT 58.673 45.455 0.00 0.00 0.00 2.83
2168 7530 2.673368 GGACTCTACTGTTGCCGATTTG 59.327 50.000 0.00 0.00 0.00 2.32
2169 7531 2.567615 AGGACTCTACTGTTGCCGATTT 59.432 45.455 0.00 0.00 0.00 2.17
2170 7532 2.180276 AGGACTCTACTGTTGCCGATT 58.820 47.619 0.00 0.00 0.00 3.34
2171 7533 1.853963 AGGACTCTACTGTTGCCGAT 58.146 50.000 0.00 0.00 0.00 4.18
2172 7534 2.502142 TAGGACTCTACTGTTGCCGA 57.498 50.000 0.00 0.00 0.00 5.54
2173 7535 4.023878 GTCTATAGGACTCTACTGTTGCCG 60.024 50.000 0.00 0.00 41.46 5.69
2174 7536 4.278919 GGTCTATAGGACTCTACTGTTGCC 59.721 50.000 0.00 0.00 43.97 4.52
2175 7537 4.023878 CGGTCTATAGGACTCTACTGTTGC 60.024 50.000 0.00 0.00 43.97 4.17
2176 7538 5.236911 GTCGGTCTATAGGACTCTACTGTTG 59.763 48.000 0.00 0.00 43.97 3.33
2177 7539 5.104610 TGTCGGTCTATAGGACTCTACTGTT 60.105 44.000 0.00 0.00 43.97 3.16
2178 7540 4.408270 TGTCGGTCTATAGGACTCTACTGT 59.592 45.833 0.00 0.00 43.97 3.55
2179 7541 4.751098 GTGTCGGTCTATAGGACTCTACTG 59.249 50.000 0.00 0.00 43.97 2.74
2180 7542 4.655186 AGTGTCGGTCTATAGGACTCTACT 59.345 45.833 0.00 0.00 43.97 2.57
2182 7544 6.699366 CATAGTGTCGGTCTATAGGACTCTA 58.301 44.000 15.58 15.58 43.97 2.43
2183 7545 5.553123 CATAGTGTCGGTCTATAGGACTCT 58.447 45.833 13.29 13.29 43.97 3.24
2184 7546 4.154556 GCATAGTGTCGGTCTATAGGACTC 59.845 50.000 0.00 1.36 43.97 3.36
2187 7549 3.074094 AGGCATAGTGTCGGTCTATAGGA 59.926 47.826 0.00 0.00 0.00 2.94
2189 7551 5.648526 ACATAGGCATAGTGTCGGTCTATAG 59.351 44.000 0.00 0.00 0.00 1.31
2192 7554 3.819337 GACATAGGCATAGTGTCGGTCTA 59.181 47.826 5.60 0.00 33.73 2.59
2193 7555 2.623889 GACATAGGCATAGTGTCGGTCT 59.376 50.000 5.60 0.00 33.73 3.85
2194 7556 2.361119 TGACATAGGCATAGTGTCGGTC 59.639 50.000 12.80 0.00 43.88 4.79
2195 7557 2.384828 TGACATAGGCATAGTGTCGGT 58.615 47.619 12.80 0.00 43.88 4.69
2196 7558 3.452755 TTGACATAGGCATAGTGTCGG 57.547 47.619 12.80 0.00 43.88 4.79
2197 7559 4.682787 TCTTTGACATAGGCATAGTGTCG 58.317 43.478 12.80 3.85 43.88 4.35
2198 7560 5.525378 CCTTCTTTGACATAGGCATAGTGTC 59.475 44.000 11.52 11.52 41.90 3.67
2201 7563 5.431765 CACCTTCTTTGACATAGGCATAGT 58.568 41.667 0.00 0.00 0.00 2.12
2202 7564 4.818546 CCACCTTCTTTGACATAGGCATAG 59.181 45.833 0.00 0.00 0.00 2.23
2203 7565 4.227300 ACCACCTTCTTTGACATAGGCATA 59.773 41.667 0.00 0.00 0.00 3.14
2204 7566 3.010584 ACCACCTTCTTTGACATAGGCAT 59.989 43.478 0.00 0.00 0.00 4.40
2205 7567 2.375174 ACCACCTTCTTTGACATAGGCA 59.625 45.455 0.00 0.00 0.00 4.75
2206 7568 2.749621 CACCACCTTCTTTGACATAGGC 59.250 50.000 0.00 0.00 0.00 3.93
2208 7570 4.003648 GTCCACCACCTTCTTTGACATAG 58.996 47.826 0.00 0.00 0.00 2.23
2209 7571 3.244770 GGTCCACCACCTTCTTTGACATA 60.245 47.826 0.00 0.00 42.84 2.29
2210 7572 2.489073 GGTCCACCACCTTCTTTGACAT 60.489 50.000 0.00 0.00 42.84 3.06
2211 7573 1.133915 GGTCCACCACCTTCTTTGACA 60.134 52.381 0.00 0.00 42.84 3.58
2212 7574 1.133915 TGGTCCACCACCTTCTTTGAC 60.134 52.381 0.00 0.00 46.98 3.18
2213 7575 1.217916 TGGTCCACCACCTTCTTTGA 58.782 50.000 0.00 0.00 46.98 2.69
2214 7576 3.819245 TGGTCCACCACCTTCTTTG 57.181 52.632 0.00 0.00 46.98 2.77
2230 9544 1.873591 GCAGCATAACCTACGGATTGG 59.126 52.381 0.00 0.00 0.00 3.16
2231 9545 1.873591 GGCAGCATAACCTACGGATTG 59.126 52.381 0.00 0.00 0.00 2.67
2233 9547 1.128200 TGGCAGCATAACCTACGGAT 58.872 50.000 0.00 0.00 0.00 4.18
2234 9548 1.070134 GATGGCAGCATAACCTACGGA 59.930 52.381 0.00 0.00 0.00 4.69
2235 9549 1.512926 GATGGCAGCATAACCTACGG 58.487 55.000 0.00 0.00 0.00 4.02
2236 9550 1.202639 TGGATGGCAGCATAACCTACG 60.203 52.381 4.64 0.00 0.00 3.51
2237 9551 2.638480 TGGATGGCAGCATAACCTAC 57.362 50.000 4.64 0.00 0.00 3.18
2238 9552 2.442878 ACATGGATGGCAGCATAACCTA 59.557 45.455 4.64 0.00 0.00 3.08
2239 9553 1.216175 ACATGGATGGCAGCATAACCT 59.784 47.619 4.64 0.00 0.00 3.50
2240 9554 1.610522 GACATGGATGGCAGCATAACC 59.389 52.381 4.64 0.00 35.34 2.85
2241 9555 1.265095 CGACATGGATGGCAGCATAAC 59.735 52.381 4.64 0.00 34.77 1.89
2242 9556 1.596603 CGACATGGATGGCAGCATAA 58.403 50.000 4.64 0.00 34.77 1.90
2243 9557 0.886043 GCGACATGGATGGCAGCATA 60.886 55.000 4.64 0.00 34.77 3.14
2244 9558 2.191513 GCGACATGGATGGCAGCAT 61.192 57.895 4.64 0.00 34.77 3.79
2247 9561 1.368345 TTTCGCGACATGGATGGCAG 61.368 55.000 9.15 0.00 34.77 4.85
2248 9562 0.957888 TTTTCGCGACATGGATGGCA 60.958 50.000 9.15 0.00 34.77 4.92
2265 9579 0.769247 AGGTGGCTACGGAGGTTTTT 59.231 50.000 0.00 0.00 0.00 1.94
2266 9580 0.036306 CAGGTGGCTACGGAGGTTTT 59.964 55.000 0.00 0.00 0.00 2.43
2267 9581 1.677552 CAGGTGGCTACGGAGGTTT 59.322 57.895 0.00 0.00 0.00 3.27
2278 9592 3.512516 GCGATTGGAGCAGGTGGC 61.513 66.667 0.00 0.00 45.30 5.01
2280 9594 1.153647 TACGCGATTGGAGCAGGTG 60.154 57.895 15.93 0.00 34.19 4.00
2282 9596 1.153647 TGTACGCGATTGGAGCAGG 60.154 57.895 15.93 0.00 34.19 4.85
2283 9597 0.735978 TGTGTACGCGATTGGAGCAG 60.736 55.000 15.93 0.00 34.19 4.24
2285 9599 0.736325 AGTGTGTACGCGATTGGAGC 60.736 55.000 15.93 0.00 0.00 4.70
2286 9600 0.992072 CAGTGTGTACGCGATTGGAG 59.008 55.000 15.93 0.00 0.00 3.86
2287 9601 1.011968 GCAGTGTGTACGCGATTGGA 61.012 55.000 15.93 0.00 0.00 3.53
2288 9602 1.419922 GCAGTGTGTACGCGATTGG 59.580 57.895 15.93 0.00 0.00 3.16
2289 9603 1.014044 AGGCAGTGTGTACGCGATTG 61.014 55.000 15.93 0.00 0.00 2.67
2291 9605 1.014044 CAAGGCAGTGTGTACGCGAT 61.014 55.000 15.93 0.00 0.00 4.58
2292 9606 1.663388 CAAGGCAGTGTGTACGCGA 60.663 57.895 15.93 0.00 0.00 5.87
2293 9607 1.218875 TTCAAGGCAGTGTGTACGCG 61.219 55.000 3.53 3.53 0.00 6.01
2294 9608 0.234884 GTTCAAGGCAGTGTGTACGC 59.765 55.000 0.00 0.00 0.00 4.42
2295 9609 1.526887 CTGTTCAAGGCAGTGTGTACG 59.473 52.381 0.00 0.00 0.00 3.67
2302 9616 1.392589 CAACCACTGTTCAAGGCAGT 58.607 50.000 0.00 0.00 46.86 4.40
2303 9617 0.670162 CCAACCACTGTTCAAGGCAG 59.330 55.000 0.00 0.00 39.67 4.85
2304 9618 0.033601 ACCAACCACTGTTCAAGGCA 60.034 50.000 0.00 0.00 30.42 4.75
2306 9620 3.139077 GAGTACCAACCACTGTTCAAGG 58.861 50.000 0.00 0.00 30.42 3.61
2307 9621 3.139077 GGAGTACCAACCACTGTTCAAG 58.861 50.000 0.00 0.00 35.97 3.02
2308 9622 2.484065 CGGAGTACCAACCACTGTTCAA 60.484 50.000 0.00 0.00 35.59 2.69
2310 9624 1.607251 CCGGAGTACCAACCACTGTTC 60.607 57.143 0.00 0.00 35.59 3.18
2311 9625 0.395312 CCGGAGTACCAACCACTGTT 59.605 55.000 0.00 0.00 35.59 3.16
2312 9626 0.761702 ACCGGAGTACCAACCACTGT 60.762 55.000 9.46 0.00 35.59 3.55
2313 9627 0.037605 GACCGGAGTACCAACCACTG 60.038 60.000 9.46 0.00 35.59 3.66
2314 9628 1.530013 CGACCGGAGTACCAACCACT 61.530 60.000 9.46 0.00 35.59 4.00
2317 9631 0.668401 CAACGACCGGAGTACCAACC 60.668 60.000 9.46 0.00 35.59 3.77
2318 9632 0.032540 ACAACGACCGGAGTACCAAC 59.967 55.000 9.46 0.00 35.59 3.77
2319 9633 1.541147 CTACAACGACCGGAGTACCAA 59.459 52.381 9.46 0.00 35.59 3.67
2320 9634 1.167851 CTACAACGACCGGAGTACCA 58.832 55.000 9.46 0.00 35.59 3.25
2321 9635 0.179153 GCTACAACGACCGGAGTACC 60.179 60.000 9.46 0.00 0.00 3.34
2322 9636 0.523072 TGCTACAACGACCGGAGTAC 59.477 55.000 9.46 0.00 0.00 2.73
2323 9637 1.466856 ATGCTACAACGACCGGAGTA 58.533 50.000 9.46 1.85 0.00 2.59
2324 9638 1.404391 CTATGCTACAACGACCGGAGT 59.596 52.381 9.46 4.67 0.00 3.85
2325 9639 1.674441 TCTATGCTACAACGACCGGAG 59.326 52.381 9.46 3.87 0.00 4.63
2326 9640 1.402968 GTCTATGCTACAACGACCGGA 59.597 52.381 9.46 0.00 0.00 5.14
2327 9641 1.535437 GGTCTATGCTACAACGACCGG 60.535 57.143 0.00 0.00 35.34 5.28
2328 9642 1.133598 TGGTCTATGCTACAACGACCG 59.866 52.381 11.56 0.00 45.43 4.79
2329 9643 2.953466 TGGTCTATGCTACAACGACC 57.047 50.000 10.15 10.15 43.37 4.79
2332 9646 3.729217 CGTACATGGTCTATGCTACAACG 59.271 47.826 0.00 0.00 40.59 4.10
2335 9649 5.008316 CACTACGTACATGGTCTATGCTACA 59.992 44.000 0.00 0.00 40.59 2.74
2338 9652 4.204799 TCACTACGTACATGGTCTATGCT 58.795 43.478 0.00 0.00 40.59 3.79
2339 9653 4.036498 ACTCACTACGTACATGGTCTATGC 59.964 45.833 0.00 0.00 40.59 3.14
2341 9655 5.066117 CACACTCACTACGTACATGGTCTAT 59.934 44.000 0.00 0.00 0.00 1.98
2345 9659 2.889045 ACACACTCACTACGTACATGGT 59.111 45.455 0.00 0.00 0.00 3.55
2346 9660 3.570926 ACACACTCACTACGTACATGG 57.429 47.619 0.00 0.00 0.00 3.66
2347 9661 4.849926 GTGTACACACTCACTACGTACATG 59.150 45.833 21.14 0.00 42.95 3.21
2348 9662 4.083110 GGTGTACACACTCACTACGTACAT 60.083 45.833 26.51 0.00 42.95 2.29
2349 9663 3.250762 GGTGTACACACTCACTACGTACA 59.749 47.826 26.51 0.00 45.73 2.90
2350 9664 3.665323 CGGTGTACACACTCACTACGTAC 60.665 52.174 26.51 4.36 45.73 3.67
2351 9665 2.480037 CGGTGTACACACTCACTACGTA 59.520 50.000 26.51 0.00 45.73 3.57
2352 9666 1.265095 CGGTGTACACACTCACTACGT 59.735 52.381 26.51 0.00 45.73 3.57
2353 9667 1.400629 CCGGTGTACACACTCACTACG 60.401 57.143 26.51 17.07 45.73 3.51
2354 9668 1.881973 TCCGGTGTACACACTCACTAC 59.118 52.381 26.51 6.46 45.73 2.73
2355 9669 2.275134 TCCGGTGTACACACTCACTA 57.725 50.000 26.51 2.72 45.73 2.74
2356 9670 1.405872 TTCCGGTGTACACACTCACT 58.594 50.000 26.51 0.00 45.73 3.41
2357 9671 2.228138 TTTCCGGTGTACACACTCAC 57.772 50.000 26.51 8.59 45.73 3.51
2359 9673 4.143263 CGTTATTTTCCGGTGTACACACTC 60.143 45.833 26.51 9.31 45.73 3.51
2360 9674 3.742369 CGTTATTTTCCGGTGTACACACT 59.258 43.478 26.51 3.59 45.73 3.55
2361 9675 3.494251 ACGTTATTTTCCGGTGTACACAC 59.506 43.478 26.51 14.97 45.72 3.82
2362 9676 3.493877 CACGTTATTTTCCGGTGTACACA 59.506 43.478 26.51 6.13 0.00 3.72
2364 9678 3.726607 ACACGTTATTTTCCGGTGTACA 58.273 40.909 0.00 0.00 0.00 2.90
2365 9679 5.160641 TCTACACGTTATTTTCCGGTGTAC 58.839 41.667 0.00 0.00 0.00 2.90
2366 9680 5.384063 TCTACACGTTATTTTCCGGTGTA 57.616 39.130 0.00 0.00 0.00 2.90
2367 9681 4.240096 CTCTACACGTTATTTTCCGGTGT 58.760 43.478 0.00 0.00 0.00 4.16
2369 9683 3.511146 TCCTCTACACGTTATTTTCCGGT 59.489 43.478 0.00 0.00 0.00 5.28
2371 9685 4.990257 TCTCCTCTACACGTTATTTTCCG 58.010 43.478 0.00 0.00 0.00 4.30
2372 9686 5.291371 GCTTCTCCTCTACACGTTATTTTCC 59.709 44.000 0.00 0.00 0.00 3.13
2373 9687 5.867716 TGCTTCTCCTCTACACGTTATTTTC 59.132 40.000 0.00 0.00 0.00 2.29
2374 9688 5.790593 TGCTTCTCCTCTACACGTTATTTT 58.209 37.500 0.00 0.00 0.00 1.82
2376 9690 5.599999 ATGCTTCTCCTCTACACGTTATT 57.400 39.130 0.00 0.00 0.00 1.40
2378 9692 5.401531 AAATGCTTCTCCTCTACACGTTA 57.598 39.130 0.00 0.00 0.00 3.18
2379 9693 3.963428 AATGCTTCTCCTCTACACGTT 57.037 42.857 0.00 0.00 0.00 3.99
2380 9694 3.963428 AAATGCTTCTCCTCTACACGT 57.037 42.857 0.00 0.00 0.00 4.49
2381 9695 4.452455 ACAAAAATGCTTCTCCTCTACACG 59.548 41.667 0.00 0.00 0.00 4.49
2383 9697 5.620206 TGACAAAAATGCTTCTCCTCTACA 58.380 37.500 0.00 0.00 0.00 2.74
2408 9722 9.997482 GGCTATGTAGAAACGATTTGATTTTTA 57.003 29.630 0.00 0.00 0.00 1.52
2411 9725 7.624360 TGGCTATGTAGAAACGATTTGATTT 57.376 32.000 0.00 0.00 0.00 2.17
2413 9727 7.624360 TTTGGCTATGTAGAAACGATTTGAT 57.376 32.000 0.00 0.00 0.00 2.57
2414 9728 6.403200 GCTTTGGCTATGTAGAAACGATTTGA 60.403 38.462 0.00 0.00 35.22 2.69
2415 9729 5.739161 GCTTTGGCTATGTAGAAACGATTTG 59.261 40.000 0.00 0.00 35.22 2.32
2416 9730 5.447279 CGCTTTGGCTATGTAGAAACGATTT 60.447 40.000 0.00 0.00 36.09 2.17
2418 9732 3.555956 CGCTTTGGCTATGTAGAAACGAT 59.444 43.478 0.00 0.00 36.09 3.73
2419 9733 2.927477 CGCTTTGGCTATGTAGAAACGA 59.073 45.455 0.00 0.00 36.09 3.85
2420 9734 2.927477 TCGCTTTGGCTATGTAGAAACG 59.073 45.455 0.00 0.00 36.09 3.60
2421 9735 4.570772 TGATCGCTTTGGCTATGTAGAAAC 59.429 41.667 0.00 0.00 36.09 2.78
2422 9736 4.765273 TGATCGCTTTGGCTATGTAGAAA 58.235 39.130 0.00 0.00 36.09 2.52
2423 9737 4.400529 TGATCGCTTTGGCTATGTAGAA 57.599 40.909 0.00 0.00 36.09 2.10
2424 9738 4.400529 TTGATCGCTTTGGCTATGTAGA 57.599 40.909 0.00 0.00 36.09 2.59
2425 9739 5.679734 ATTTGATCGCTTTGGCTATGTAG 57.320 39.130 0.00 0.00 36.09 2.74
2426 9740 7.497579 TCTTAATTTGATCGCTTTGGCTATGTA 59.502 33.333 0.00 0.00 36.09 2.29
2427 9741 4.989279 AATTTGATCGCTTTGGCTATGT 57.011 36.364 0.00 0.00 36.09 2.29
2428 9742 6.634436 GTCTTAATTTGATCGCTTTGGCTATG 59.366 38.462 0.00 0.00 36.09 2.23
2429 9743 6.318648 TGTCTTAATTTGATCGCTTTGGCTAT 59.681 34.615 0.00 0.00 36.09 2.97
2430 9744 5.645929 TGTCTTAATTTGATCGCTTTGGCTA 59.354 36.000 0.00 0.00 36.09 3.93
2431 9745 4.458989 TGTCTTAATTTGATCGCTTTGGCT 59.541 37.500 0.00 0.00 36.09 4.75
2433 9747 6.628856 CGTATGTCTTAATTTGATCGCTTTGG 59.371 38.462 0.00 0.00 0.00 3.28
2434 9748 6.139169 GCGTATGTCTTAATTTGATCGCTTTG 59.861 38.462 0.00 0.00 37.55 2.77
2437 9751 5.050490 AGCGTATGTCTTAATTTGATCGCT 58.950 37.500 0.00 0.00 44.00 4.93
2438 9752 5.330271 AGCGTATGTCTTAATTTGATCGC 57.670 39.130 0.00 0.00 40.14 4.58
2441 9755 5.680619 TGGGAGCGTATGTCTTAATTTGAT 58.319 37.500 0.00 0.00 0.00 2.57
2443 9757 5.049405 GGATGGGAGCGTATGTCTTAATTTG 60.049 44.000 0.00 0.00 0.00 2.32
2444 9758 5.063880 GGATGGGAGCGTATGTCTTAATTT 58.936 41.667 0.00 0.00 0.00 1.82
2445 9759 4.348168 AGGATGGGAGCGTATGTCTTAATT 59.652 41.667 0.00 0.00 0.00 1.40
2448 9762 2.958818 AGGATGGGAGCGTATGTCTTA 58.041 47.619 0.00 0.00 0.00 2.10
2449 9763 1.794714 AGGATGGGAGCGTATGTCTT 58.205 50.000 0.00 0.00 0.00 3.01
2450 9764 1.794714 AAGGATGGGAGCGTATGTCT 58.205 50.000 0.00 0.00 0.00 3.41
2451 9765 3.963428 ATAAGGATGGGAGCGTATGTC 57.037 47.619 0.00 0.00 0.00 3.06
2452 9766 4.322801 GCTAATAAGGATGGGAGCGTATGT 60.323 45.833 0.00 0.00 0.00 2.29
2453 9767 4.184629 GCTAATAAGGATGGGAGCGTATG 58.815 47.826 0.00 0.00 0.00 2.39
2454 9768 3.119101 CGCTAATAAGGATGGGAGCGTAT 60.119 47.826 5.95 0.00 45.69 3.06
2456 9770 1.000955 CGCTAATAAGGATGGGAGCGT 59.999 52.381 5.95 0.00 45.69 5.07
2457 9771 1.714794 CGCTAATAAGGATGGGAGCG 58.285 55.000 0.00 0.00 45.58 5.03
2458 9772 2.841442 ACGCTAATAAGGATGGGAGC 57.159 50.000 0.00 0.00 0.00 4.70
2460 9774 5.105567 TCAAAACGCTAATAAGGATGGGA 57.894 39.130 0.00 0.00 0.00 4.37
2461 9775 5.449999 GGTTCAAAACGCTAATAAGGATGGG 60.450 44.000 0.00 0.00 0.00 4.00
2462 9776 5.357032 AGGTTCAAAACGCTAATAAGGATGG 59.643 40.000 0.00 0.00 0.00 3.51
2463 9777 6.436843 AGGTTCAAAACGCTAATAAGGATG 57.563 37.500 0.00 0.00 0.00 3.51
2464 9778 8.747538 AATAGGTTCAAAACGCTAATAAGGAT 57.252 30.769 0.00 0.00 0.00 3.24
2465 9779 8.570068 AAATAGGTTCAAAACGCTAATAAGGA 57.430 30.769 0.00 0.00 0.00 3.36
2466 9780 9.072294 CAAAATAGGTTCAAAACGCTAATAAGG 57.928 33.333 0.00 0.00 0.00 2.69
2469 9783 8.569641 ACACAAAATAGGTTCAAAACGCTAATA 58.430 29.630 0.00 0.00 0.00 0.98
2470 9784 7.430441 ACACAAAATAGGTTCAAAACGCTAAT 58.570 30.769 0.00 0.00 0.00 1.73
2471 9785 6.797454 ACACAAAATAGGTTCAAAACGCTAA 58.203 32.000 0.00 0.00 0.00 3.09
2473 9787 5.257082 ACACAAAATAGGTTCAAAACGCT 57.743 34.783 0.00 0.00 0.00 5.07
2474 9788 6.203647 AGTACACAAAATAGGTTCAAAACGC 58.796 36.000 0.00 0.00 0.00 4.84
2475 9789 7.698970 ACAAGTACACAAAATAGGTTCAAAACG 59.301 33.333 0.00 0.00 0.00 3.60
2478 9792 8.514330 AGACAAGTACACAAAATAGGTTCAAA 57.486 30.769 0.00 0.00 0.00 2.69
2482 9796 7.554835 TCACAAGACAAGTACACAAAATAGGTT 59.445 33.333 0.00 0.00 0.00 3.50
2483 9797 7.012044 GTCACAAGACAAGTACACAAAATAGGT 59.988 37.037 0.00 0.00 44.34 3.08
2487 9943 5.885912 AGGTCACAAGACAAGTACACAAAAT 59.114 36.000 0.00 0.00 46.80 1.82
2548 10007 5.647225 GGTCTCAGCTCTCTCAATTCATTTT 59.353 40.000 0.00 0.00 0.00 1.82
2573 10032 4.442612 GCAATATTGGAGCTGAGTCTCTCA 60.443 45.833 17.02 0.00 38.25 3.27


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.