Multiple sequence alignment - TraesCS2D01G002000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2D01G002000 chr2D 100.000 1870 0 0 725 2594 1637525 1639394 0.000000e+00 3454.0
1 TraesCS2D01G002000 chr2D 100.000 349 0 0 1 349 1636801 1637149 0.000000e+00 645.0
2 TraesCS2D01G002000 chr2D 81.803 588 75 19 1035 1617 1659556 1660116 5.060000e-127 464.0
3 TraesCS2D01G002000 chr2D 90.476 63 6 0 796 858 5643419 5643357 1.650000e-12 84.2
4 TraesCS2D01G002000 chr2D 96.000 50 2 0 16 65 1659159 1659208 5.950000e-12 82.4
5 TraesCS2D01G002000 chr2D 95.745 47 2 0 813 859 1659338 1659384 2.770000e-10 76.8
6 TraesCS2D01G002000 chr2A 92.760 884 51 4 725 1601 746703 747580 0.000000e+00 1266.0
7 TraesCS2D01G002000 chr2A 88.817 617 37 11 2002 2594 747584 748192 0.000000e+00 728.0
8 TraesCS2D01G002000 chr2A 79.017 834 107 35 780 1574 766336645 766337449 2.300000e-140 508.0
9 TraesCS2D01G002000 chr2A 79.560 636 96 24 952 1576 715394 716006 8.580000e-115 424.0
10 TraesCS2D01G002000 chr2A 82.460 439 72 3 1118 1552 820110 820547 1.880000e-101 379.0
11 TraesCS2D01G002000 chr2A 82.460 439 72 3 1118 1552 892124 892561 1.880000e-101 379.0
12 TraesCS2D01G002000 chr2A 77.794 680 107 28 889 1552 955002 955653 1.880000e-101 379.0
13 TraesCS2D01G002000 chr2A 85.286 367 36 11 2170 2525 778455833 778455474 1.900000e-96 363.0
14 TraesCS2D01G002000 chr2A 84.298 242 11 8 131 349 746424 746661 7.270000e-51 211.0
15 TraesCS2D01G002000 chr2A 80.934 257 45 3 1313 1567 895767 896021 1.570000e-47 200.0
16 TraesCS2D01G002000 chr2A 95.385 65 3 0 1 65 766336476 766336540 1.270000e-18 104.0
17 TraesCS2D01G002000 chr2A 95.161 62 3 0 4 65 891567 891628 5.910000e-17 99.0
18 TraesCS2D01G002000 chr2A 95.161 62 3 0 4 65 953440 953501 5.910000e-17 99.0
19 TraesCS2D01G002000 chr2A 86.667 90 2 4 780 859 953609 953698 9.890000e-15 91.6
20 TraesCS2D01G002000 chr2A 85.882 85 10 2 813 897 891789 891871 3.560000e-14 89.8
21 TraesCS2D01G002000 chr2A 100.000 33 0 0 1611 1643 766337729 766337761 7.750000e-06 62.1
22 TraesCS2D01G002000 chr2B 90.764 877 40 21 954 1816 10188206 10187357 0.000000e+00 1133.0
23 TraesCS2D01G002000 chr2B 92.683 164 7 1 725 883 10188395 10188232 5.580000e-57 231.0
24 TraesCS2D01G002000 chr2B 87.864 206 6 5 1971 2157 10187193 10186988 9.340000e-55 224.0
25 TraesCS2D01G002000 chr2B 81.098 164 13 11 1020 1183 10181964 10181819 5.870000e-22 115.0
26 TraesCS2D01G002000 chr2B 96.721 61 2 0 254 314 10188500 10188440 4.570000e-18 102.0
27 TraesCS2D01G002000 chr2B 100.000 28 0 0 916 943 10188228 10188201 5.000000e-03 52.8
28 TraesCS2D01G002000 chr4A 87.027 370 31 11 2170 2526 190831579 190831944 4.020000e-108 401.0
29 TraesCS2D01G002000 chr3D 86.253 371 30 13 2170 2525 464115219 464115583 1.460000e-102 383.0
30 TraesCS2D01G002000 chr4D 85.445 371 33 15 2170 2525 297318447 297318083 1.470000e-97 366.0
31 TraesCS2D01G002000 chr1D 85.794 359 33 12 2170 2512 366718200 366718556 5.280000e-97 364.0
32 TraesCS2D01G002000 chr1A 85.286 367 39 9 2170 2525 536966753 536966391 5.280000e-97 364.0
33 TraesCS2D01G002000 chr5A 85.135 370 36 13 2170 2525 19915950 19915586 6.820000e-96 361.0
34 TraesCS2D01G002000 chr1B 85.027 374 32 13 2170 2525 44501446 44501079 2.450000e-95 359.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2D01G002000 chr2D 1636801 1639394 2593 False 2049.500000 3454 100.000000 1 2594 2 chr2D.!!$F1 2593
1 TraesCS2D01G002000 chr2D 1659159 1660116 957 False 207.733333 464 91.182667 16 1617 3 chr2D.!!$F2 1601
2 TraesCS2D01G002000 chr2A 746424 748192 1768 False 735.000000 1266 88.625000 131 2594 3 chr2A.!!$F3 2463
3 TraesCS2D01G002000 chr2A 715394 716006 612 False 424.000000 424 79.560000 952 1576 1 chr2A.!!$F1 624
4 TraesCS2D01G002000 chr2A 766336476 766337761 1285 False 224.700000 508 91.467333 1 1643 3 chr2A.!!$F6 1642
5 TraesCS2D01G002000 chr2B 10186988 10188500 1512 True 348.560000 1133 93.606400 254 2157 5 chr2B.!!$R2 1903

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
104 105 0.095417 GCCGAGCGCTTTAGTTCAAG 59.905 55.0 13.26 0.0 0.0 3.02 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1862 2234 0.099082 GCTCAAGATGAAGCTGCTGC 59.901 55.0 1.35 7.62 40.05 5.25 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
45 46 9.936759 AACTTGTTTTCTGACCATTAAAAAGAA 57.063 25.926 0.00 0.00 0.00 2.52
65 66 6.141560 AGAAACAAGAAGGAAGAAAGCAAG 57.858 37.500 0.00 0.00 0.00 4.01
66 67 4.926140 AACAAGAAGGAAGAAAGCAAGG 57.074 40.909 0.00 0.00 0.00 3.61
67 68 3.225940 ACAAGAAGGAAGAAAGCAAGGG 58.774 45.455 0.00 0.00 0.00 3.95
68 69 2.560105 CAAGAAGGAAGAAAGCAAGGGG 59.440 50.000 0.00 0.00 0.00 4.79
69 70 0.891373 GAAGGAAGAAAGCAAGGGGC 59.109 55.000 0.00 0.00 45.30 5.80
102 103 3.870606 GCCGAGCGCTTTAGTTCA 58.129 55.556 13.26 0.00 0.00 3.18
103 104 2.159181 GCCGAGCGCTTTAGTTCAA 58.841 52.632 13.26 0.00 0.00 2.69
104 105 0.095417 GCCGAGCGCTTTAGTTCAAG 59.905 55.000 13.26 0.00 0.00 3.02
105 106 0.095417 CCGAGCGCTTTAGTTCAAGC 59.905 55.000 13.26 0.00 45.01 4.01
106 107 0.095417 CGAGCGCTTTAGTTCAAGCC 59.905 55.000 13.26 0.00 45.59 4.35
107 108 1.443802 GAGCGCTTTAGTTCAAGCCT 58.556 50.000 13.26 0.00 45.59 4.58
108 109 2.618053 GAGCGCTTTAGTTCAAGCCTA 58.382 47.619 13.26 0.00 45.59 3.93
109 110 2.605366 GAGCGCTTTAGTTCAAGCCTAG 59.395 50.000 13.26 0.00 45.59 3.02
110 111 1.062733 GCGCTTTAGTTCAAGCCTAGC 59.937 52.381 0.00 0.00 45.59 3.42
111 112 2.346803 CGCTTTAGTTCAAGCCTAGCA 58.653 47.619 0.00 0.00 45.59 3.49
112 113 2.939103 CGCTTTAGTTCAAGCCTAGCAT 59.061 45.455 0.00 0.00 45.59 3.79
113 114 3.242543 CGCTTTAGTTCAAGCCTAGCATG 60.243 47.826 0.00 0.00 45.59 4.06
114 115 3.941483 GCTTTAGTTCAAGCCTAGCATGA 59.059 43.478 0.00 0.00 43.03 3.07
115 116 4.396166 GCTTTAGTTCAAGCCTAGCATGAA 59.604 41.667 0.00 3.33 42.56 2.57
120 121 4.771590 TTCAAGCCTAGCATGAACAAAG 57.228 40.909 0.00 0.00 40.49 2.77
121 122 3.084039 TCAAGCCTAGCATGAACAAAGG 58.916 45.455 0.00 0.00 33.32 3.11
125 126 3.940209 CCTAGCATGAACAAAGGCAAA 57.060 42.857 0.00 0.00 0.00 3.68
126 127 3.841643 CCTAGCATGAACAAAGGCAAAG 58.158 45.455 0.00 0.00 0.00 2.77
127 128 2.825861 AGCATGAACAAAGGCAAAGG 57.174 45.000 0.00 0.00 0.00 3.11
128 129 2.041701 AGCATGAACAAAGGCAAAGGT 58.958 42.857 0.00 0.00 0.00 3.50
129 130 3.230134 AGCATGAACAAAGGCAAAGGTA 58.770 40.909 0.00 0.00 0.00 3.08
148 149 1.873698 AACAATGGCAAAAGCAGCAG 58.126 45.000 0.00 0.00 0.00 4.24
156 157 0.179105 CAAAAGCAGCAGCACCAACA 60.179 50.000 3.17 0.00 45.49 3.33
161 162 1.147557 GCAGCAGCACCAACAACAAC 61.148 55.000 0.00 0.00 41.58 3.32
165 166 1.593933 GCAGCACCAACAACAACAATG 59.406 47.619 0.00 0.00 0.00 2.82
173 174 2.676839 CAACAACAACAATGGCAGCAAA 59.323 40.909 0.00 0.00 0.00 3.68
182 183 2.043625 TGGCAGCAAAGGCAAAGAG 58.956 52.632 0.00 0.00 44.61 2.85
183 184 1.291272 GGCAGCAAAGGCAAAGAGG 59.709 57.895 0.00 0.00 44.61 3.69
195 200 1.675641 AAAGAGGTGATGCACGGCC 60.676 57.895 0.00 0.00 34.83 6.13
220 225 4.271049 CCGTATGACTAAGCACAAATCCAG 59.729 45.833 0.00 0.00 0.00 3.86
221 226 4.260375 CGTATGACTAAGCACAAATCCAGC 60.260 45.833 0.00 0.00 0.00 4.85
222 227 3.423539 TGACTAAGCACAAATCCAGCT 57.576 42.857 0.00 0.00 41.03 4.24
223 228 3.338249 TGACTAAGCACAAATCCAGCTC 58.662 45.455 0.00 0.00 37.70 4.09
225 230 2.289694 ACTAAGCACAAATCCAGCTCGT 60.290 45.455 0.00 0.00 37.70 4.18
226 231 1.160137 AAGCACAAATCCAGCTCGTC 58.840 50.000 0.00 0.00 37.70 4.20
228 233 0.445436 GCACAAATCCAGCTCGTCAG 59.555 55.000 0.00 0.00 0.00 3.51
229 234 1.800805 CACAAATCCAGCTCGTCAGT 58.199 50.000 0.00 0.00 0.00 3.41
231 236 3.325870 CACAAATCCAGCTCGTCAGTTA 58.674 45.455 0.00 0.00 0.00 2.24
232 237 3.123621 CACAAATCCAGCTCGTCAGTTAC 59.876 47.826 0.00 0.00 0.00 2.50
233 238 3.244078 ACAAATCCAGCTCGTCAGTTACA 60.244 43.478 0.00 0.00 0.00 2.41
234 239 3.895232 AATCCAGCTCGTCAGTTACAT 57.105 42.857 0.00 0.00 0.00 2.29
235 240 2.654749 TCCAGCTCGTCAGTTACATG 57.345 50.000 0.00 0.00 0.00 3.21
251 256 3.878086 ACATGTTAACGTGCAACAGAG 57.122 42.857 24.53 15.07 39.15 3.35
339 362 6.153340 CCTTTGAACCATTCATCTTGTGGTAT 59.847 38.462 0.00 0.00 45.10 2.73
827 892 3.976793 ATTTGGCATGTATGAAGCTCG 57.023 42.857 0.00 0.00 0.00 5.03
887 952 4.284860 TCGGCCATCGATCGCCTG 62.285 66.667 27.99 21.37 43.74 4.85
891 956 0.530744 GGCCATCGATCGCCTGTATA 59.469 55.000 24.81 0.00 42.21 1.47
915 982 7.795534 ACATATGAGGAGAGAAGATAATGCT 57.204 36.000 10.38 0.00 0.00 3.79
918 985 3.708121 TGAGGAGAGAAGATAATGCTGCA 59.292 43.478 4.13 4.13 0.00 4.41
919 986 4.202233 TGAGGAGAGAAGATAATGCTGCAG 60.202 45.833 10.11 10.11 0.00 4.41
920 987 2.807392 GGAGAGAAGATAATGCTGCAGC 59.193 50.000 31.89 31.89 42.50 5.25
947 1018 2.015736 AGCATCTCGATCAACACCAC 57.984 50.000 0.00 0.00 0.00 4.16
988 1069 5.298276 AGCTAGGAGAGTAGAAATCGACAAG 59.702 44.000 0.00 0.00 0.00 3.16
1007 1088 0.514691 GAAGATTGATCGATGGCCGC 59.485 55.000 0.54 0.00 38.37 6.53
1033 1138 3.565214 TCATGGTGGCGGTGGTGT 61.565 61.111 0.00 0.00 0.00 4.16
1146 1260 1.748122 CAAGCTCTGCGGCAAGGAT 60.748 57.895 3.44 0.00 34.17 3.24
1150 1264 3.008517 TCTGCGGCAAGGATCCCA 61.009 61.111 8.55 0.00 0.00 4.37
1157 1271 1.750399 GCAAGGATCCCACGTGCAT 60.750 57.895 10.91 3.72 0.00 3.96
1353 1467 3.853307 GCAACAAGACGGTGGAAGAATTG 60.853 47.826 0.00 0.00 0.00 2.32
1444 1558 1.226603 GAGTGCTACCGTACAGCCG 60.227 63.158 1.59 0.00 38.29 5.52
1538 1661 1.157257 TGTTGCGCGCAGAAGAAGAA 61.157 50.000 34.25 14.38 0.00 2.52
1539 1662 0.451792 GTTGCGCGCAGAAGAAGAAG 60.452 55.000 34.25 0.00 0.00 2.85
1584 1707 2.239681 TCCTCAAGAAGAGTCCTCCC 57.760 55.000 0.00 0.00 43.12 4.30
1603 1726 1.133025 CCGCCGCTTGAAAAATGAGAT 59.867 47.619 0.00 0.00 0.00 2.75
1604 1727 2.179589 CGCCGCTTGAAAAATGAGATG 58.820 47.619 0.00 0.00 0.00 2.90
1605 1728 2.533266 GCCGCTTGAAAAATGAGATGG 58.467 47.619 0.00 0.00 0.00 3.51
1606 1729 2.164219 GCCGCTTGAAAAATGAGATGGA 59.836 45.455 0.00 0.00 0.00 3.41
1607 1730 3.367292 GCCGCTTGAAAAATGAGATGGAA 60.367 43.478 0.00 0.00 0.00 3.53
1608 1731 4.678840 GCCGCTTGAAAAATGAGATGGAAT 60.679 41.667 0.00 0.00 0.00 3.01
1609 1732 4.802039 CCGCTTGAAAAATGAGATGGAATG 59.198 41.667 0.00 0.00 0.00 2.67
1643 2015 6.831727 TTCATCTCATTTTGTTGTTGCTTG 57.168 33.333 0.00 0.00 0.00 4.01
1644 2016 5.904941 TCATCTCATTTTGTTGTTGCTTGT 58.095 33.333 0.00 0.00 0.00 3.16
1645 2017 5.749588 TCATCTCATTTTGTTGTTGCTTGTG 59.250 36.000 0.00 0.00 0.00 3.33
1646 2018 3.864583 TCTCATTTTGTTGTTGCTTGTGC 59.135 39.130 0.00 0.00 40.20 4.57
1647 2019 3.859443 TCATTTTGTTGTTGCTTGTGCT 58.141 36.364 0.00 0.00 40.48 4.40
1648 2020 3.617706 TCATTTTGTTGTTGCTTGTGCTG 59.382 39.130 0.00 0.00 40.48 4.41
1649 2021 2.739885 TTTGTTGTTGCTTGTGCTGT 57.260 40.000 0.00 0.00 40.48 4.40
1650 2022 1.993542 TTGTTGTTGCTTGTGCTGTG 58.006 45.000 0.00 0.00 40.48 3.66
1651 2023 1.172175 TGTTGTTGCTTGTGCTGTGA 58.828 45.000 0.00 0.00 40.48 3.58
1652 2024 1.135431 TGTTGTTGCTTGTGCTGTGAC 60.135 47.619 0.00 0.00 40.48 3.67
1653 2025 0.455410 TTGTTGCTTGTGCTGTGACC 59.545 50.000 0.00 0.00 40.48 4.02
1654 2026 0.394216 TGTTGCTTGTGCTGTGACCT 60.394 50.000 0.00 0.00 40.48 3.85
1655 2027 1.134250 TGTTGCTTGTGCTGTGACCTA 60.134 47.619 0.00 0.00 40.48 3.08
1656 2028 1.264288 GTTGCTTGTGCTGTGACCTAC 59.736 52.381 0.00 0.00 40.48 3.18
1657 2029 0.758734 TGCTTGTGCTGTGACCTACT 59.241 50.000 0.00 0.00 40.48 2.57
1658 2030 1.151668 GCTTGTGCTGTGACCTACTG 58.848 55.000 0.00 0.00 36.03 2.74
1659 2031 1.541233 GCTTGTGCTGTGACCTACTGT 60.541 52.381 0.00 0.00 36.03 3.55
1660 2032 2.288825 GCTTGTGCTGTGACCTACTGTA 60.289 50.000 0.00 0.00 36.03 2.74
1661 2033 3.318017 CTTGTGCTGTGACCTACTGTAC 58.682 50.000 0.00 0.00 41.76 2.90
1662 2034 1.616865 TGTGCTGTGACCTACTGTACC 59.383 52.381 0.00 0.00 41.08 3.34
1663 2035 1.893801 GTGCTGTGACCTACTGTACCT 59.106 52.381 0.00 0.00 37.70 3.08
1664 2036 1.893137 TGCTGTGACCTACTGTACCTG 59.107 52.381 0.00 0.00 0.00 4.00
1665 2037 1.893801 GCTGTGACCTACTGTACCTGT 59.106 52.381 0.00 0.00 0.00 4.00
1666 2038 2.352814 GCTGTGACCTACTGTACCTGTG 60.353 54.545 0.00 0.00 0.00 3.66
1667 2039 3.154710 CTGTGACCTACTGTACCTGTGA 58.845 50.000 0.00 0.00 0.00 3.58
1668 2040 3.568443 TGTGACCTACTGTACCTGTGAA 58.432 45.455 0.00 0.00 0.00 3.18
1669 2041 3.962063 TGTGACCTACTGTACCTGTGAAA 59.038 43.478 0.00 0.00 0.00 2.69
1670 2042 4.591498 TGTGACCTACTGTACCTGTGAAAT 59.409 41.667 0.00 0.00 0.00 2.17
1671 2043 4.929808 GTGACCTACTGTACCTGTGAAATG 59.070 45.833 0.00 0.00 0.00 2.32
1672 2044 4.836175 TGACCTACTGTACCTGTGAAATGA 59.164 41.667 0.00 0.00 0.00 2.57
1673 2045 5.305902 TGACCTACTGTACCTGTGAAATGAA 59.694 40.000 0.00 0.00 0.00 2.57
1674 2046 6.013725 TGACCTACTGTACCTGTGAAATGAAT 60.014 38.462 0.00 0.00 0.00 2.57
1675 2047 6.779860 ACCTACTGTACCTGTGAAATGAATT 58.220 36.000 0.00 0.00 0.00 2.17
1676 2048 6.655003 ACCTACTGTACCTGTGAAATGAATTG 59.345 38.462 0.00 0.00 0.00 2.32
1677 2049 6.878923 CCTACTGTACCTGTGAAATGAATTGA 59.121 38.462 0.00 0.00 0.00 2.57
1678 2050 6.808008 ACTGTACCTGTGAAATGAATTGAG 57.192 37.500 0.00 0.00 0.00 3.02
1679 2051 5.707298 ACTGTACCTGTGAAATGAATTGAGG 59.293 40.000 0.00 0.00 0.00 3.86
1680 2052 5.009631 TGTACCTGTGAAATGAATTGAGGG 58.990 41.667 0.00 0.00 0.00 4.30
1681 2053 4.387026 ACCTGTGAAATGAATTGAGGGA 57.613 40.909 0.00 0.00 0.00 4.20
1682 2054 4.338879 ACCTGTGAAATGAATTGAGGGAG 58.661 43.478 0.00 0.00 0.00 4.30
1683 2055 3.129988 CCTGTGAAATGAATTGAGGGAGC 59.870 47.826 0.00 0.00 0.00 4.70
1684 2056 2.749076 TGTGAAATGAATTGAGGGAGCG 59.251 45.455 0.00 0.00 0.00 5.03
1685 2057 3.009723 GTGAAATGAATTGAGGGAGCGA 58.990 45.455 0.00 0.00 0.00 4.93
1686 2058 3.629398 GTGAAATGAATTGAGGGAGCGAT 59.371 43.478 0.00 0.00 0.00 4.58
1687 2059 4.096984 GTGAAATGAATTGAGGGAGCGATT 59.903 41.667 0.00 0.00 0.00 3.34
1688 2060 5.296780 GTGAAATGAATTGAGGGAGCGATTA 59.703 40.000 0.00 0.00 0.00 1.75
1689 2061 5.528690 TGAAATGAATTGAGGGAGCGATTAG 59.471 40.000 0.00 0.00 0.00 1.73
1690 2062 4.963318 ATGAATTGAGGGAGCGATTAGA 57.037 40.909 0.00 0.00 0.00 2.10
1691 2063 4.963318 TGAATTGAGGGAGCGATTAGAT 57.037 40.909 0.00 0.00 0.00 1.98
1692 2064 4.635223 TGAATTGAGGGAGCGATTAGATG 58.365 43.478 0.00 0.00 0.00 2.90
1693 2065 4.101585 TGAATTGAGGGAGCGATTAGATGT 59.898 41.667 0.00 0.00 0.00 3.06
1694 2066 3.735237 TTGAGGGAGCGATTAGATGTC 57.265 47.619 0.00 0.00 0.00 3.06
1695 2067 2.666317 TGAGGGAGCGATTAGATGTCA 58.334 47.619 0.00 0.00 0.00 3.58
1696 2068 3.031013 TGAGGGAGCGATTAGATGTCAA 58.969 45.455 0.00 0.00 0.00 3.18
1697 2069 3.643320 TGAGGGAGCGATTAGATGTCAAT 59.357 43.478 0.00 0.00 0.00 2.57
1698 2070 4.832823 TGAGGGAGCGATTAGATGTCAATA 59.167 41.667 0.00 0.00 0.00 1.90
1699 2071 5.481824 TGAGGGAGCGATTAGATGTCAATAT 59.518 40.000 0.00 0.00 0.00 1.28
1700 2072 5.971763 AGGGAGCGATTAGATGTCAATATC 58.028 41.667 0.00 0.00 0.00 1.63
1701 2073 5.105146 AGGGAGCGATTAGATGTCAATATCC 60.105 44.000 0.00 0.00 0.00 2.59
1702 2074 5.337571 GGGAGCGATTAGATGTCAATATCCA 60.338 44.000 0.00 0.00 0.00 3.41
1703 2075 6.166279 GGAGCGATTAGATGTCAATATCCAA 58.834 40.000 0.00 0.00 0.00 3.53
1704 2076 6.650807 GGAGCGATTAGATGTCAATATCCAAA 59.349 38.462 0.00 0.00 0.00 3.28
1705 2077 7.335422 GGAGCGATTAGATGTCAATATCCAAAT 59.665 37.037 0.00 0.00 0.00 2.32
1706 2078 9.371136 GAGCGATTAGATGTCAATATCCAAATA 57.629 33.333 0.00 0.00 0.00 1.40
1707 2079 9.725019 AGCGATTAGATGTCAATATCCAAATAA 57.275 29.630 0.00 0.00 0.00 1.40
1720 2092 9.590451 CAATATCCAAATAAATATCATGGTGCC 57.410 33.333 0.00 0.00 32.90 5.01
1721 2093 6.610075 ATCCAAATAAATATCATGGTGCCC 57.390 37.500 0.00 0.00 32.90 5.36
1722 2094 5.462240 TCCAAATAAATATCATGGTGCCCA 58.538 37.500 0.00 0.00 38.19 5.36
1723 2095 5.304101 TCCAAATAAATATCATGGTGCCCAC 59.696 40.000 0.00 0.00 35.80 4.61
1724 2096 5.221880 CAAATAAATATCATGGTGCCCACG 58.778 41.667 0.00 0.00 35.80 4.94
1725 2097 2.435372 AAATATCATGGTGCCCACGT 57.565 45.000 0.00 0.00 35.80 4.49
1726 2098 1.679139 AATATCATGGTGCCCACGTG 58.321 50.000 9.08 9.08 35.80 4.49
1727 2099 0.836606 ATATCATGGTGCCCACGTGA 59.163 50.000 19.30 0.00 35.80 4.35
1728 2100 0.107897 TATCATGGTGCCCACGTGAC 60.108 55.000 19.30 9.48 35.80 3.67
1729 2101 2.123248 ATCATGGTGCCCACGTGACA 62.123 55.000 19.30 12.32 35.80 3.58
1730 2102 2.032528 ATGGTGCCCACGTGACAG 59.967 61.111 19.30 6.47 35.80 3.51
1731 2103 3.551496 ATGGTGCCCACGTGACAGG 62.551 63.158 19.30 11.28 35.80 4.00
1740 2112 4.742201 CGTGACAGGGCGGGACAG 62.742 72.222 0.00 0.00 0.00 3.51
1741 2113 4.394712 GTGACAGGGCGGGACAGG 62.395 72.222 0.00 0.00 0.00 4.00
1742 2114 4.631740 TGACAGGGCGGGACAGGA 62.632 66.667 0.00 0.00 0.00 3.86
1743 2115 3.775654 GACAGGGCGGGACAGGAG 61.776 72.222 0.00 0.00 0.00 3.69
1747 2119 4.554036 GGGCGGGACAGGAGCATC 62.554 72.222 0.00 0.00 0.00 3.91
1748 2120 4.899239 GGCGGGACAGGAGCATCG 62.899 72.222 0.00 0.00 34.37 3.84
1749 2121 3.838271 GCGGGACAGGAGCATCGA 61.838 66.667 0.00 0.00 34.37 3.59
1750 2122 2.105128 CGGGACAGGAGCATCGAC 59.895 66.667 0.00 0.00 34.37 4.20
1751 2123 2.105128 GGGACAGGAGCATCGACG 59.895 66.667 0.00 0.00 34.37 5.12
1752 2124 2.415608 GGGACAGGAGCATCGACGA 61.416 63.158 0.00 0.00 34.37 4.20
1753 2125 1.064946 GGACAGGAGCATCGACGAG 59.935 63.158 3.01 0.00 34.37 4.18
1754 2126 1.587613 GACAGGAGCATCGACGAGC 60.588 63.158 3.01 7.40 34.37 5.03
1755 2127 2.653448 CAGGAGCATCGACGAGCG 60.653 66.667 3.01 0.00 42.69 5.03
1763 2135 3.175724 TCGACGAGCGAGGAAGAC 58.824 61.111 0.00 0.00 45.59 3.01
1764 2136 2.276743 CGACGAGCGAGGAAGACG 60.277 66.667 0.00 0.00 44.57 4.18
1765 2137 2.868920 GACGAGCGAGGAAGACGT 59.131 61.111 0.00 0.00 39.82 4.34
1766 2138 1.512310 GACGAGCGAGGAAGACGTG 60.512 63.158 0.00 0.00 37.32 4.49
1767 2139 2.202492 CGAGCGAGGAAGACGTGG 60.202 66.667 0.00 0.00 0.00 4.94
1768 2140 2.963371 GAGCGAGGAAGACGTGGT 59.037 61.111 0.00 0.00 0.00 4.16
1769 2141 1.289380 GAGCGAGGAAGACGTGGTT 59.711 57.895 0.00 0.00 0.00 3.67
1770 2142 0.733223 GAGCGAGGAAGACGTGGTTC 60.733 60.000 0.00 0.00 0.00 3.62
1771 2143 1.006571 GCGAGGAAGACGTGGTTCA 60.007 57.895 0.00 0.00 0.00 3.18
1772 2144 0.389948 GCGAGGAAGACGTGGTTCAT 60.390 55.000 0.00 0.00 0.00 2.57
1773 2145 1.350193 CGAGGAAGACGTGGTTCATG 58.650 55.000 0.00 0.00 0.00 3.07
1774 2146 1.079503 GAGGAAGACGTGGTTCATGC 58.920 55.000 0.00 0.00 0.00 4.06
1775 2147 0.687354 AGGAAGACGTGGTTCATGCT 59.313 50.000 0.00 0.00 0.00 3.79
1776 2148 0.798776 GGAAGACGTGGTTCATGCTG 59.201 55.000 0.00 0.00 0.00 4.41
1777 2149 1.512926 GAAGACGTGGTTCATGCTGT 58.487 50.000 0.00 0.00 0.00 4.40
1778 2150 1.461127 GAAGACGTGGTTCATGCTGTC 59.539 52.381 0.00 0.00 0.00 3.51
1779 2151 0.667487 AGACGTGGTTCATGCTGTCG 60.667 55.000 0.00 0.00 0.00 4.35
1780 2152 1.626654 GACGTGGTTCATGCTGTCGG 61.627 60.000 0.00 0.00 0.00 4.79
1781 2153 2.870372 GTGGTTCATGCTGTCGGC 59.130 61.111 0.00 0.00 42.22 5.54
1782 2154 2.741985 TGGTTCATGCTGTCGGCG 60.742 61.111 0.00 0.00 45.43 6.46
1783 2155 2.434185 GGTTCATGCTGTCGGCGA 60.434 61.111 4.99 4.99 45.43 5.54
1784 2156 2.032634 GGTTCATGCTGTCGGCGAA 61.033 57.895 12.92 0.00 45.43 4.70
1785 2157 1.421485 GTTCATGCTGTCGGCGAAG 59.579 57.895 12.92 12.73 45.43 3.79
1786 2158 1.014044 GTTCATGCTGTCGGCGAAGA 61.014 55.000 12.92 0.00 45.43 2.87
1787 2159 0.108186 TTCATGCTGTCGGCGAAGAT 60.108 50.000 12.92 0.00 45.43 2.40
1788 2160 0.807275 TCATGCTGTCGGCGAAGATG 60.807 55.000 12.92 11.43 45.43 2.90
1789 2161 1.522355 ATGCTGTCGGCGAAGATGG 60.522 57.895 12.92 1.14 45.43 3.51
1790 2162 3.567797 GCTGTCGGCGAAGATGGC 61.568 66.667 12.92 8.09 0.00 4.40
1797 2169 3.885521 GCGAAGATGGCCTGCTGC 61.886 66.667 3.32 0.00 40.16 5.25
1798 2170 2.124819 CGAAGATGGCCTGCTGCT 60.125 61.111 3.32 0.00 40.92 4.24
1799 2171 1.748122 CGAAGATGGCCTGCTGCTT 60.748 57.895 3.32 0.00 40.92 3.91
1800 2172 1.807886 GAAGATGGCCTGCTGCTTG 59.192 57.895 3.32 0.00 40.92 4.01
1801 2173 0.964358 GAAGATGGCCTGCTGCTTGT 60.964 55.000 3.32 0.00 40.92 3.16
1802 2174 0.541296 AAGATGGCCTGCTGCTTGTT 60.541 50.000 3.32 0.00 40.92 2.83
1803 2175 0.964358 AGATGGCCTGCTGCTTGTTC 60.964 55.000 3.32 0.00 40.92 3.18
1804 2176 0.964358 GATGGCCTGCTGCTTGTTCT 60.964 55.000 3.32 0.00 40.92 3.01
1805 2177 0.964358 ATGGCCTGCTGCTTGTTCTC 60.964 55.000 3.32 0.00 40.92 2.87
1806 2178 2.338785 GGCCTGCTGCTTGTTCTCC 61.339 63.158 0.00 0.00 40.92 3.71
1807 2179 2.684843 GCCTGCTGCTTGTTCTCCG 61.685 63.158 0.00 0.00 36.87 4.63
1808 2180 2.684843 CCTGCTGCTTGTTCTCCGC 61.685 63.158 0.00 0.00 0.00 5.54
1809 2181 1.962822 CTGCTGCTTGTTCTCCGCA 60.963 57.895 0.00 0.00 0.00 5.69
1811 2183 2.866028 CTGCTTGTTCTCCGCAGC 59.134 61.111 0.00 0.00 43.75 5.25
1812 2184 3.020026 CTGCTTGTTCTCCGCAGCG 62.020 63.158 8.18 8.18 43.75 5.18
1822 2194 4.717629 CCGCAGCGGTCGTGAAGA 62.718 66.667 26.69 0.00 42.73 2.87
1823 2195 2.733218 CGCAGCGGTCGTGAAGAA 60.733 61.111 7.00 0.00 0.00 2.52
1824 2196 2.094659 CGCAGCGGTCGTGAAGAAT 61.095 57.895 7.00 0.00 0.00 2.40
1825 2197 1.626654 CGCAGCGGTCGTGAAGAATT 61.627 55.000 7.00 0.00 0.00 2.17
1826 2198 0.179215 GCAGCGGTCGTGAAGAATTG 60.179 55.000 0.00 0.00 0.00 2.32
1827 2199 1.428448 CAGCGGTCGTGAAGAATTGA 58.572 50.000 0.00 0.00 0.00 2.57
1828 2200 1.798223 CAGCGGTCGTGAAGAATTGAA 59.202 47.619 0.00 0.00 0.00 2.69
1829 2201 1.798813 AGCGGTCGTGAAGAATTGAAC 59.201 47.619 0.00 0.00 0.00 3.18
1830 2202 1.461888 GCGGTCGTGAAGAATTGAACG 60.462 52.381 0.00 0.00 43.98 3.95
1831 2203 2.055838 CGGTCGTGAAGAATTGAACGA 58.944 47.619 0.00 0.00 43.88 3.85
1834 2206 1.454276 TCGTGAAGAATTGAACGACGC 59.546 47.619 0.00 0.00 38.41 5.19
1835 2207 1.778568 CGTGAAGAATTGAACGACGCG 60.779 52.381 3.53 3.53 37.03 6.01
1836 2208 1.191647 GTGAAGAATTGAACGACGCGT 59.808 47.619 13.85 13.85 43.97 6.01
1837 2209 1.191425 TGAAGAATTGAACGACGCGTG 59.809 47.619 20.70 12.18 39.99 5.34
1838 2210 1.191647 GAAGAATTGAACGACGCGTGT 59.808 47.619 20.70 12.94 39.99 4.49
1839 2211 0.506932 AGAATTGAACGACGCGTGTG 59.493 50.000 20.70 12.17 39.99 3.82
1840 2212 1.052768 GAATTGAACGACGCGTGTGC 61.053 55.000 20.70 14.72 39.99 4.57
1841 2213 1.767127 AATTGAACGACGCGTGTGCA 61.767 50.000 20.70 17.39 39.99 4.57
1842 2214 1.565156 ATTGAACGACGCGTGTGCAT 61.565 50.000 20.70 7.56 39.99 3.96
1843 2215 2.202046 GAACGACGCGTGTGCATG 60.202 61.111 20.70 1.10 39.99 4.06
1844 2216 3.629491 GAACGACGCGTGTGCATGG 62.629 63.158 20.70 0.00 39.99 3.66
1847 2219 4.450122 GACGCGTGTGCATGGCAG 62.450 66.667 20.70 0.00 40.08 4.85
1850 2222 2.745884 GCGTGTGCATGGCAGGTA 60.746 61.111 0.00 0.00 40.08 3.08
1851 2223 3.039202 GCGTGTGCATGGCAGGTAC 62.039 63.158 13.47 13.47 40.08 3.34
1852 2224 2.739704 CGTGTGCATGGCAGGTACG 61.740 63.158 15.19 12.41 40.08 3.67
1853 2225 1.671054 GTGTGCATGGCAGGTACGT 60.671 57.895 15.19 0.00 40.08 3.57
1854 2226 0.390603 GTGTGCATGGCAGGTACGTA 60.391 55.000 15.19 0.00 40.08 3.57
1855 2227 0.108377 TGTGCATGGCAGGTACGTAG 60.108 55.000 15.19 0.00 40.08 3.51
1856 2228 0.810031 GTGCATGGCAGGTACGTAGG 60.810 60.000 4.34 0.00 40.08 3.18
1857 2229 1.887707 GCATGGCAGGTACGTAGGC 60.888 63.158 0.00 0.00 0.00 3.93
1858 2230 1.823295 CATGGCAGGTACGTAGGCT 59.177 57.895 12.00 0.00 0.00 4.58
1859 2231 0.530650 CATGGCAGGTACGTAGGCTG 60.531 60.000 12.00 3.34 0.00 4.85
1860 2232 2.202892 GGCAGGTACGTAGGCTGC 60.203 66.667 11.34 11.34 39.99 5.25
1861 2233 2.577059 GCAGGTACGTAGGCTGCA 59.423 61.111 14.00 0.00 40.38 4.41
1862 2234 1.519455 GCAGGTACGTAGGCTGCAG 60.519 63.158 10.11 10.11 40.38 4.41
1863 2235 1.519455 CAGGTACGTAGGCTGCAGC 60.519 63.158 30.88 30.88 41.14 5.25
1864 2236 1.982395 AGGTACGTAGGCTGCAGCA 60.982 57.895 37.63 18.09 44.36 4.41
1865 2237 1.519455 GGTACGTAGGCTGCAGCAG 60.519 63.158 37.63 26.33 44.36 4.24
1881 2253 0.099082 GCAGCAGCTTCATCTTGAGC 59.901 55.000 0.00 0.00 37.91 4.26
1882 2254 1.740297 CAGCAGCTTCATCTTGAGCT 58.260 50.000 0.00 0.00 33.38 4.09
1883 2255 1.398739 CAGCAGCTTCATCTTGAGCTG 59.601 52.381 18.24 18.24 44.17 4.24
1884 2256 0.733729 GCAGCTTCATCTTGAGCTGG 59.266 55.000 22.29 8.36 42.92 4.85
1885 2257 1.949547 GCAGCTTCATCTTGAGCTGGT 60.950 52.381 22.29 0.57 42.92 4.00
1886 2258 2.434428 CAGCTTCATCTTGAGCTGGTT 58.566 47.619 15.56 0.00 41.03 3.67
1887 2259 2.419324 CAGCTTCATCTTGAGCTGGTTC 59.581 50.000 15.56 0.00 41.03 3.62
1888 2260 2.305343 AGCTTCATCTTGAGCTGGTTCT 59.695 45.455 0.00 0.00 32.45 3.01
1889 2261 2.419324 GCTTCATCTTGAGCTGGTTCTG 59.581 50.000 0.00 0.00 0.00 3.02
1890 2262 2.775911 TCATCTTGAGCTGGTTCTGG 57.224 50.000 0.00 0.00 0.00 3.86
1891 2263 1.280133 TCATCTTGAGCTGGTTCTGGG 59.720 52.381 0.00 0.00 0.00 4.45
1892 2264 1.004044 CATCTTGAGCTGGTTCTGGGT 59.996 52.381 0.00 0.00 0.00 4.51
1893 2265 0.397941 TCTTGAGCTGGTTCTGGGTG 59.602 55.000 0.00 0.00 0.00 4.61
1894 2266 1.228245 TTGAGCTGGTTCTGGGTGC 60.228 57.895 0.00 0.00 0.00 5.01
1895 2267 2.360475 GAGCTGGTTCTGGGTGCC 60.360 66.667 0.00 0.00 0.00 5.01
1896 2268 3.177884 AGCTGGTTCTGGGTGCCA 61.178 61.111 0.00 0.00 0.00 4.92
1897 2269 2.036256 GCTGGTTCTGGGTGCCAT 59.964 61.111 0.00 0.00 30.82 4.40
1898 2270 1.207488 AGCTGGTTCTGGGTGCCATA 61.207 55.000 0.00 0.00 30.82 2.74
1899 2271 0.323360 GCTGGTTCTGGGTGCCATAA 60.323 55.000 0.00 0.00 30.82 1.90
1900 2272 1.890573 GCTGGTTCTGGGTGCCATAAA 60.891 52.381 0.00 0.00 30.82 1.40
1901 2273 2.524306 CTGGTTCTGGGTGCCATAAAA 58.476 47.619 0.00 0.00 30.82 1.52
1902 2274 2.493278 CTGGTTCTGGGTGCCATAAAAG 59.507 50.000 0.00 0.00 30.82 2.27
1903 2275 1.824852 GGTTCTGGGTGCCATAAAAGG 59.175 52.381 0.00 0.00 30.82 3.11
1904 2276 2.525368 GTTCTGGGTGCCATAAAAGGT 58.475 47.619 0.00 0.00 30.82 3.50
1905 2277 2.214376 TCTGGGTGCCATAAAAGGTG 57.786 50.000 0.00 0.00 30.82 4.00
1906 2278 1.707989 TCTGGGTGCCATAAAAGGTGA 59.292 47.619 0.00 0.00 30.82 4.02
1907 2279 2.109128 TCTGGGTGCCATAAAAGGTGAA 59.891 45.455 0.00 0.00 30.82 3.18
1908 2280 2.493278 CTGGGTGCCATAAAAGGTGAAG 59.507 50.000 0.00 0.00 30.82 3.02
1909 2281 1.204704 GGGTGCCATAAAAGGTGAAGC 59.795 52.381 0.00 0.00 0.00 3.86
1910 2282 1.892474 GGTGCCATAAAAGGTGAAGCA 59.108 47.619 0.00 0.00 0.00 3.91
1911 2283 2.352715 GGTGCCATAAAAGGTGAAGCAC 60.353 50.000 3.72 3.72 46.33 4.40
1919 2291 3.642755 GGTGAAGCACCGACAGTG 58.357 61.111 0.22 0.00 44.95 3.66
1950 2322 3.765026 CAATTTATTGTACGGCACCCAC 58.235 45.455 0.00 0.00 33.22 4.61
1951 2323 2.863132 TTTATTGTACGGCACCCACT 57.137 45.000 0.00 0.00 0.00 4.00
1952 2324 2.102070 TTATTGTACGGCACCCACTG 57.898 50.000 0.00 0.00 0.00 3.66
1953 2325 0.978151 TATTGTACGGCACCCACTGT 59.022 50.000 0.00 0.00 0.00 3.55
1954 2326 0.978151 ATTGTACGGCACCCACTGTA 59.022 50.000 0.00 0.00 0.00 2.74
1955 2327 0.757512 TTGTACGGCACCCACTGTAA 59.242 50.000 0.00 0.00 33.29 2.41
1956 2328 0.978151 TGTACGGCACCCACTGTAAT 59.022 50.000 0.00 0.00 33.29 1.89
1957 2329 1.338294 TGTACGGCACCCACTGTAATG 60.338 52.381 0.00 0.00 33.29 1.90
1958 2330 0.978151 TACGGCACCCACTGTAATGT 59.022 50.000 0.00 0.00 0.00 2.71
1959 2331 0.605319 ACGGCACCCACTGTAATGTG 60.605 55.000 0.00 0.00 37.66 3.21
1960 2332 0.605319 CGGCACCCACTGTAATGTGT 60.605 55.000 0.00 0.00 36.30 3.72
1961 2333 0.881118 GGCACCCACTGTAATGTGTG 59.119 55.000 0.00 0.00 36.30 3.82
1962 2334 0.240945 GCACCCACTGTAATGTGTGC 59.759 55.000 0.00 0.00 36.30 4.57
1963 2335 1.896220 CACCCACTGTAATGTGTGCT 58.104 50.000 0.00 0.00 36.30 4.40
1964 2336 1.806542 CACCCACTGTAATGTGTGCTC 59.193 52.381 0.00 0.00 36.30 4.26
1965 2337 1.271379 ACCCACTGTAATGTGTGCTCC 60.271 52.381 0.00 0.00 36.30 4.70
1966 2338 1.453155 CCACTGTAATGTGTGCTCCC 58.547 55.000 0.00 0.00 36.30 4.30
1967 2339 1.003580 CCACTGTAATGTGTGCTCCCT 59.996 52.381 0.00 0.00 36.30 4.20
1968 2340 2.079158 CACTGTAATGTGTGCTCCCTG 58.921 52.381 0.00 0.00 33.61 4.45
1969 2341 1.977854 ACTGTAATGTGTGCTCCCTGA 59.022 47.619 0.00 0.00 0.00 3.86
1970 2342 2.573462 ACTGTAATGTGTGCTCCCTGAT 59.427 45.455 0.00 0.00 0.00 2.90
1971 2343 3.774766 ACTGTAATGTGTGCTCCCTGATA 59.225 43.478 0.00 0.00 0.00 2.15
1972 2344 4.122776 CTGTAATGTGTGCTCCCTGATAC 58.877 47.826 0.00 0.00 0.00 2.24
1973 2345 3.774766 TGTAATGTGTGCTCCCTGATACT 59.225 43.478 0.00 0.00 0.00 2.12
1974 2346 4.959839 TGTAATGTGTGCTCCCTGATACTA 59.040 41.667 0.00 0.00 0.00 1.82
1975 2347 5.602561 TGTAATGTGTGCTCCCTGATACTAT 59.397 40.000 0.00 0.00 0.00 2.12
1976 2348 5.636903 AATGTGTGCTCCCTGATACTATT 57.363 39.130 0.00 0.00 0.00 1.73
1977 2349 5.636903 ATGTGTGCTCCCTGATACTATTT 57.363 39.130 0.00 0.00 0.00 1.40
1978 2350 6.747414 ATGTGTGCTCCCTGATACTATTTA 57.253 37.500 0.00 0.00 0.00 1.40
1979 2351 6.747414 TGTGTGCTCCCTGATACTATTTAT 57.253 37.500 0.00 0.00 0.00 1.40
1980 2352 6.524734 TGTGTGCTCCCTGATACTATTTATG 58.475 40.000 0.00 0.00 0.00 1.90
1981 2353 6.099701 TGTGTGCTCCCTGATACTATTTATGT 59.900 38.462 0.00 0.00 0.00 2.29
1982 2354 6.992715 GTGTGCTCCCTGATACTATTTATGTT 59.007 38.462 0.00 0.00 0.00 2.71
1983 2355 7.171678 GTGTGCTCCCTGATACTATTTATGTTC 59.828 40.741 0.00 0.00 0.00 3.18
1984 2356 6.366332 GTGCTCCCTGATACTATTTATGTTCG 59.634 42.308 0.00 0.00 0.00 3.95
1985 2357 5.348997 GCTCCCTGATACTATTTATGTTCGC 59.651 44.000 0.00 0.00 0.00 4.70
1986 2358 6.665992 TCCCTGATACTATTTATGTTCGCT 57.334 37.500 0.00 0.00 0.00 4.93
1987 2359 7.062749 TCCCTGATACTATTTATGTTCGCTT 57.937 36.000 0.00 0.00 0.00 4.68
1988 2360 7.152645 TCCCTGATACTATTTATGTTCGCTTC 58.847 38.462 0.00 0.00 0.00 3.86
1989 2361 6.089551 CCCTGATACTATTTATGTTCGCTTCG 59.910 42.308 0.00 0.00 0.00 3.79
1990 2362 6.400091 CCTGATACTATTTATGTTCGCTTCGC 60.400 42.308 0.00 0.00 0.00 4.70
1991 2363 6.213677 TGATACTATTTATGTTCGCTTCGCT 58.786 36.000 0.00 0.00 0.00 4.93
1992 2364 6.700081 TGATACTATTTATGTTCGCTTCGCTT 59.300 34.615 0.00 0.00 0.00 4.68
1993 2365 5.796350 ACTATTTATGTTCGCTTCGCTTT 57.204 34.783 0.00 0.00 0.00 3.51
1994 2366 6.178239 ACTATTTATGTTCGCTTCGCTTTT 57.822 33.333 0.00 0.00 0.00 2.27
1995 2367 6.021596 ACTATTTATGTTCGCTTCGCTTTTG 58.978 36.000 0.00 0.00 0.00 2.44
1996 2368 2.241259 TATGTTCGCTTCGCTTTTGC 57.759 45.000 0.00 0.00 43.23 3.68
2180 2957 5.707242 TTCATCGAGACTGTTAGAGTTGT 57.293 39.130 0.00 0.00 33.83 3.32
2185 2962 3.059120 CGAGACTGTTAGAGTTGTGTCGA 60.059 47.826 5.77 0.00 44.97 4.20
2193 2970 9.871238 ACTGTTAGAGTTGTGTCGAATATTATT 57.129 29.630 0.00 0.00 0.00 1.40
2199 2976 9.647797 AGAGTTGTGTCGAATATTATTGTACAA 57.352 29.630 11.41 11.41 0.00 2.41
2227 3004 5.365619 AGGTTACAGTTGGACTTGTAGTTG 58.634 41.667 0.00 0.00 0.00 3.16
2233 3010 5.238650 ACAGTTGGACTTGTAGTTGTATTGC 59.761 40.000 0.00 0.00 0.00 3.56
2250 3027 8.656849 GTTGTATTGCGTTTAGATAGGATATGG 58.343 37.037 0.00 0.00 0.00 2.74
2287 3064 4.679331 AGGACACTTATATCCTAGGCCTC 58.321 47.826 9.68 0.00 43.85 4.70
2318 3095 5.637127 TGAGGGGATAGACACACGATATAA 58.363 41.667 0.00 0.00 0.00 0.98
2343 3121 1.674359 CCAACATAATAGCACGGGCA 58.326 50.000 14.57 0.00 44.61 5.36
2344 3122 2.229792 CCAACATAATAGCACGGGCAT 58.770 47.619 14.57 0.00 44.61 4.40
2346 3124 1.238439 ACATAATAGCACGGGCATGC 58.762 50.000 14.57 9.90 46.50 4.06
2390 3181 1.093496 GGGTGGTGTATTGTAGCGGC 61.093 60.000 0.00 0.00 0.00 6.53
2397 3188 0.859232 GTATTGTAGCGGCGTCATGG 59.141 55.000 9.37 0.00 0.00 3.66
2401 3192 3.078196 TAGCGGCGTCATGGGGAA 61.078 61.111 9.37 0.00 0.00 3.97
2415 3206 1.069935 GGGAAGAGCGCCCATAGTC 59.930 63.158 2.29 0.00 45.31 2.59
2459 3255 4.682860 GTGAACCTCGTTAACAAATCTCGA 59.317 41.667 6.39 0.00 27.94 4.04
2475 3272 2.738521 GATGCGTGCTCGTGTGGT 60.739 61.111 10.18 0.00 39.49 4.16
2485 3282 1.507141 CTCGTGTGGTTGCTTGGTCC 61.507 60.000 0.00 0.00 0.00 4.46
2488 3285 0.465460 GTGTGGTTGCTTGGTCCTCA 60.465 55.000 0.00 0.00 0.00 3.86
2499 3296 2.143876 TGGTCCTCAGATGATCGACA 57.856 50.000 10.58 0.00 0.00 4.35
2500 3297 2.456577 TGGTCCTCAGATGATCGACAA 58.543 47.619 10.58 0.01 0.00 3.18
2512 3309 0.034059 ATCGACAATGGCCTCGGATC 59.966 55.000 11.72 0.00 0.00 3.36
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
45 46 3.638627 CCCTTGCTTTCTTCCTTCTTGTT 59.361 43.478 0.00 0.00 0.00 2.83
85 86 0.095417 CTTGAACTAAAGCGCTCGGC 59.905 55.000 12.06 0.00 44.05 5.54
86 87 0.095417 GCTTGAACTAAAGCGCTCGG 59.905 55.000 12.06 6.52 42.86 4.63
87 88 3.569957 GCTTGAACTAAAGCGCTCG 57.430 52.632 12.06 4.90 42.86 5.03
99 100 3.507233 CCTTTGTTCATGCTAGGCTTGAA 59.493 43.478 14.01 14.01 45.69 2.69
100 101 3.084039 CCTTTGTTCATGCTAGGCTTGA 58.916 45.455 0.00 4.39 40.15 3.02
101 102 2.416431 GCCTTTGTTCATGCTAGGCTTG 60.416 50.000 12.93 0.00 46.14 4.01
102 103 1.821136 GCCTTTGTTCATGCTAGGCTT 59.179 47.619 12.93 0.00 46.14 4.35
103 104 1.467920 GCCTTTGTTCATGCTAGGCT 58.532 50.000 12.93 0.00 46.14 4.58
105 106 3.367703 CCTTTGCCTTTGTTCATGCTAGG 60.368 47.826 0.00 0.00 0.00 3.02
106 107 3.256631 ACCTTTGCCTTTGTTCATGCTAG 59.743 43.478 0.00 0.00 0.00 3.42
107 108 3.230134 ACCTTTGCCTTTGTTCATGCTA 58.770 40.909 0.00 0.00 0.00 3.49
108 109 2.041701 ACCTTTGCCTTTGTTCATGCT 58.958 42.857 0.00 0.00 0.00 3.79
109 110 2.531522 ACCTTTGCCTTTGTTCATGC 57.468 45.000 0.00 0.00 0.00 4.06
110 111 4.942852 TGTTACCTTTGCCTTTGTTCATG 58.057 39.130 0.00 0.00 0.00 3.07
111 112 5.606348 TTGTTACCTTTGCCTTTGTTCAT 57.394 34.783 0.00 0.00 0.00 2.57
112 113 5.355596 CATTGTTACCTTTGCCTTTGTTCA 58.644 37.500 0.00 0.00 0.00 3.18
113 114 4.749598 CCATTGTTACCTTTGCCTTTGTTC 59.250 41.667 0.00 0.00 0.00 3.18
114 115 4.702831 CCATTGTTACCTTTGCCTTTGTT 58.297 39.130 0.00 0.00 0.00 2.83
115 116 3.494223 GCCATTGTTACCTTTGCCTTTGT 60.494 43.478 0.00 0.00 0.00 2.83
116 117 3.066380 GCCATTGTTACCTTTGCCTTTG 58.934 45.455 0.00 0.00 0.00 2.77
117 118 2.703007 TGCCATTGTTACCTTTGCCTTT 59.297 40.909 0.00 0.00 0.00 3.11
118 119 2.324541 TGCCATTGTTACCTTTGCCTT 58.675 42.857 0.00 0.00 0.00 4.35
119 120 2.008242 TGCCATTGTTACCTTTGCCT 57.992 45.000 0.00 0.00 0.00 4.75
120 121 2.829741 TTGCCATTGTTACCTTTGCC 57.170 45.000 0.00 0.00 0.00 4.52
121 122 3.058983 GCTTTTGCCATTGTTACCTTTGC 60.059 43.478 0.00 0.00 40.15 3.68
122 123 4.125703 TGCTTTTGCCATTGTTACCTTTG 58.874 39.130 0.00 0.00 46.87 2.77
123 124 4.379652 CTGCTTTTGCCATTGTTACCTTT 58.620 39.130 0.00 0.00 46.87 3.11
124 125 3.803368 GCTGCTTTTGCCATTGTTACCTT 60.803 43.478 0.00 0.00 46.87 3.50
125 126 2.289010 GCTGCTTTTGCCATTGTTACCT 60.289 45.455 0.00 0.00 46.87 3.08
126 127 2.068519 GCTGCTTTTGCCATTGTTACC 58.931 47.619 0.00 0.00 46.87 2.85
127 128 2.733026 CTGCTGCTTTTGCCATTGTTAC 59.267 45.455 0.00 0.00 46.87 2.50
128 129 2.867251 GCTGCTGCTTTTGCCATTGTTA 60.867 45.455 8.53 0.00 46.87 2.41
129 130 1.873698 CTGCTGCTTTTGCCATTGTT 58.126 45.000 0.00 0.00 46.87 2.83
148 149 0.936600 GCCATTGTTGTTGTTGGTGC 59.063 50.000 0.00 0.00 0.00 5.01
156 157 1.811176 GCCTTTGCTGCCATTGTTGTT 60.811 47.619 0.00 0.00 33.53 2.83
161 162 1.153353 CTTTGCCTTTGCTGCCATTG 58.847 50.000 0.00 0.00 38.71 2.82
165 166 1.291272 CCTCTTTGCCTTTGCTGCC 59.709 57.895 0.00 0.00 38.71 4.85
173 174 0.957395 CGTGCATCACCTCTTTGCCT 60.957 55.000 0.00 0.00 35.51 4.75
195 200 4.508124 GGATTTGTGCTTAGTCATACGGAG 59.492 45.833 0.00 0.00 0.00 4.63
220 225 3.671928 ACGTTAACATGTAACTGACGAGC 59.328 43.478 17.10 0.00 33.67 5.03
221 226 4.432503 GCACGTTAACATGTAACTGACGAG 60.433 45.833 17.10 11.65 33.67 4.18
222 227 3.426191 GCACGTTAACATGTAACTGACGA 59.574 43.478 17.10 0.00 33.67 4.20
223 228 3.182772 TGCACGTTAACATGTAACTGACG 59.817 43.478 10.67 10.67 35.39 4.35
225 230 4.571176 TGTTGCACGTTAACATGTAACTGA 59.429 37.500 27.47 12.46 40.71 3.41
226 231 4.838681 TGTTGCACGTTAACATGTAACTG 58.161 39.130 27.47 4.63 40.71 3.16
228 233 5.085636 TCTGTTGCACGTTAACATGTAAC 57.914 39.130 23.10 23.10 40.56 2.50
229 234 4.212425 CCTCTGTTGCACGTTAACATGTAA 59.788 41.667 13.67 3.55 37.41 2.41
231 236 2.548057 CCTCTGTTGCACGTTAACATGT 59.452 45.455 13.67 0.00 37.41 3.21
232 237 2.805671 TCCTCTGTTGCACGTTAACATG 59.194 45.455 13.67 1.11 37.41 3.21
233 238 3.120321 TCCTCTGTTGCACGTTAACAT 57.880 42.857 13.67 0.00 37.41 2.71
234 239 2.605837 TCCTCTGTTGCACGTTAACA 57.394 45.000 12.89 12.89 36.66 2.41
235 240 5.796350 ATTATCCTCTGTTGCACGTTAAC 57.204 39.130 5.68 5.68 0.00 2.01
735 758 3.785486 ACAACTTTTGCTTGAGCCTTTC 58.215 40.909 0.00 0.00 41.18 2.62
807 859 3.544684 TCGAGCTTCATACATGCCAAAT 58.455 40.909 0.00 0.00 0.00 2.32
811 863 2.225019 CCATTCGAGCTTCATACATGCC 59.775 50.000 0.00 0.00 0.00 4.40
821 886 1.099879 GCCATGAGCCATTCGAGCTT 61.100 55.000 0.00 0.00 41.75 3.74
891 956 7.613585 CAGCATTATCTTCTCTCCTCATATGT 58.386 38.462 1.90 0.00 0.00 2.29
919 986 2.746904 TGATCGAGATGCTAGCTAGAGC 59.253 50.000 25.15 13.46 43.16 4.09
920 987 4.215185 TGTTGATCGAGATGCTAGCTAGAG 59.785 45.833 25.15 1.31 0.00 2.43
947 1018 0.601311 GCTAGCTAGTTGATGGGCGG 60.601 60.000 21.62 0.00 0.00 6.13
988 1069 0.514691 GCGGCCATCGATCAATCTTC 59.485 55.000 2.24 0.00 42.43 2.87
1033 1138 4.531426 GGCCACCACCACCACCAA 62.531 66.667 0.00 0.00 0.00 3.67
1146 1260 4.094646 ATGGCGATGCACGTGGGA 62.095 61.111 18.88 0.00 44.60 4.37
1150 1264 2.819595 GACCATGGCGATGCACGT 60.820 61.111 13.04 0.00 44.60 4.49
1157 1271 3.822192 CCGTCTCGACCATGGCGA 61.822 66.667 23.59 23.59 36.23 5.54
1200 1314 0.257039 ACATGCCCTTGATGGACTCC 59.743 55.000 0.00 0.00 38.35 3.85
1425 1539 1.141234 GGCTGTACGGTAGCACTCC 59.859 63.158 3.10 0.00 42.88 3.85
1444 1558 3.790123 GCCTTGATGTAGCAAAATCTCGC 60.790 47.826 0.00 0.00 0.00 5.03
1538 1661 1.002087 CTTTACGGCACTCTTCACCCT 59.998 52.381 0.00 0.00 0.00 4.34
1539 1662 1.001633 TCTTTACGGCACTCTTCACCC 59.998 52.381 0.00 0.00 0.00 4.61
1584 1707 2.179589 CATCTCATTTTTCAAGCGGCG 58.820 47.619 0.51 0.51 0.00 6.46
1603 1726 4.830600 AGATGAATACATGCATGCATTCCA 59.169 37.500 34.30 26.18 38.96 3.53
1604 1727 5.048294 TGAGATGAATACATGCATGCATTCC 60.048 40.000 34.30 25.02 38.96 3.01
1605 1728 6.009115 TGAGATGAATACATGCATGCATTC 57.991 37.500 32.47 32.47 39.74 2.67
1606 1729 6.590234 ATGAGATGAATACATGCATGCATT 57.410 33.333 30.32 24.32 36.82 3.56
1607 1730 6.590234 AATGAGATGAATACATGCATGCAT 57.410 33.333 27.46 27.46 36.82 3.96
1608 1731 6.399639 AAATGAGATGAATACATGCATGCA 57.600 33.333 26.53 25.04 36.82 3.96
1609 1732 6.700081 ACAAAATGAGATGAATACATGCATGC 59.300 34.615 26.53 11.82 36.82 4.06
1643 2015 1.893801 AGGTACAGTAGGTCACAGCAC 59.106 52.381 0.00 0.00 0.00 4.40
1644 2016 1.893137 CAGGTACAGTAGGTCACAGCA 59.107 52.381 0.00 0.00 0.00 4.41
1645 2017 1.893801 ACAGGTACAGTAGGTCACAGC 59.106 52.381 0.00 0.00 0.00 4.40
1646 2018 3.154710 TCACAGGTACAGTAGGTCACAG 58.845 50.000 0.00 0.00 0.00 3.66
1647 2019 3.232720 TCACAGGTACAGTAGGTCACA 57.767 47.619 0.00 0.00 0.00 3.58
1648 2020 4.595762 TTTCACAGGTACAGTAGGTCAC 57.404 45.455 0.00 0.00 0.00 3.67
1649 2021 4.836175 TCATTTCACAGGTACAGTAGGTCA 59.164 41.667 0.00 0.00 0.00 4.02
1650 2022 5.401531 TCATTTCACAGGTACAGTAGGTC 57.598 43.478 0.00 0.00 0.00 3.85
1651 2023 5.818678 TTCATTTCACAGGTACAGTAGGT 57.181 39.130 0.00 0.00 0.00 3.08
1652 2024 6.878923 TCAATTCATTTCACAGGTACAGTAGG 59.121 38.462 0.00 0.00 0.00 3.18
1653 2025 7.065085 CCTCAATTCATTTCACAGGTACAGTAG 59.935 40.741 0.00 0.00 0.00 2.57
1654 2026 6.878923 CCTCAATTCATTTCACAGGTACAGTA 59.121 38.462 0.00 0.00 0.00 2.74
1655 2027 5.707298 CCTCAATTCATTTCACAGGTACAGT 59.293 40.000 0.00 0.00 0.00 3.55
1656 2028 5.124457 CCCTCAATTCATTTCACAGGTACAG 59.876 44.000 0.00 0.00 0.00 2.74
1657 2029 5.009631 CCCTCAATTCATTTCACAGGTACA 58.990 41.667 0.00 0.00 0.00 2.90
1658 2030 5.253330 TCCCTCAATTCATTTCACAGGTAC 58.747 41.667 0.00 0.00 0.00 3.34
1659 2031 5.500234 CTCCCTCAATTCATTTCACAGGTA 58.500 41.667 0.00 0.00 0.00 3.08
1660 2032 4.338879 CTCCCTCAATTCATTTCACAGGT 58.661 43.478 0.00 0.00 0.00 4.00
1661 2033 3.129988 GCTCCCTCAATTCATTTCACAGG 59.870 47.826 0.00 0.00 0.00 4.00
1662 2034 3.181503 CGCTCCCTCAATTCATTTCACAG 60.182 47.826 0.00 0.00 0.00 3.66
1663 2035 2.749076 CGCTCCCTCAATTCATTTCACA 59.251 45.455 0.00 0.00 0.00 3.58
1664 2036 3.009723 TCGCTCCCTCAATTCATTTCAC 58.990 45.455 0.00 0.00 0.00 3.18
1665 2037 3.348647 TCGCTCCCTCAATTCATTTCA 57.651 42.857 0.00 0.00 0.00 2.69
1666 2038 4.907879 AATCGCTCCCTCAATTCATTTC 57.092 40.909 0.00 0.00 0.00 2.17
1667 2039 5.684704 TCTAATCGCTCCCTCAATTCATTT 58.315 37.500 0.00 0.00 0.00 2.32
1668 2040 5.296151 TCTAATCGCTCCCTCAATTCATT 57.704 39.130 0.00 0.00 0.00 2.57
1669 2041 4.963318 TCTAATCGCTCCCTCAATTCAT 57.037 40.909 0.00 0.00 0.00 2.57
1670 2042 4.101585 ACATCTAATCGCTCCCTCAATTCA 59.898 41.667 0.00 0.00 0.00 2.57
1671 2043 4.636249 ACATCTAATCGCTCCCTCAATTC 58.364 43.478 0.00 0.00 0.00 2.17
1672 2044 4.101585 TGACATCTAATCGCTCCCTCAATT 59.898 41.667 0.00 0.00 0.00 2.32
1673 2045 3.643320 TGACATCTAATCGCTCCCTCAAT 59.357 43.478 0.00 0.00 0.00 2.57
1674 2046 3.031013 TGACATCTAATCGCTCCCTCAA 58.969 45.455 0.00 0.00 0.00 3.02
1675 2047 2.666317 TGACATCTAATCGCTCCCTCA 58.334 47.619 0.00 0.00 0.00 3.86
1676 2048 3.735237 TTGACATCTAATCGCTCCCTC 57.265 47.619 0.00 0.00 0.00 4.30
1677 2049 5.105146 GGATATTGACATCTAATCGCTCCCT 60.105 44.000 0.00 0.00 0.00 4.20
1678 2050 5.112686 GGATATTGACATCTAATCGCTCCC 58.887 45.833 0.00 0.00 0.00 4.30
1679 2051 5.724328 TGGATATTGACATCTAATCGCTCC 58.276 41.667 0.00 0.00 0.00 4.70
1680 2052 7.658179 TTTGGATATTGACATCTAATCGCTC 57.342 36.000 0.00 0.00 0.00 5.03
1681 2053 9.725019 TTATTTGGATATTGACATCTAATCGCT 57.275 29.630 0.00 0.00 0.00 4.93
1694 2066 9.590451 GGCACCATGATATTTATTTGGATATTG 57.410 33.333 0.00 0.00 0.00 1.90
1723 2095 4.742201 CTGTCCCGCCCTGTCACG 62.742 72.222 0.00 0.00 0.00 4.35
1724 2096 4.394712 CCTGTCCCGCCCTGTCAC 62.395 72.222 0.00 0.00 0.00 3.67
1725 2097 4.631740 TCCTGTCCCGCCCTGTCA 62.632 66.667 0.00 0.00 0.00 3.58
1726 2098 3.775654 CTCCTGTCCCGCCCTGTC 61.776 72.222 0.00 0.00 0.00 3.51
1730 2102 4.554036 GATGCTCCTGTCCCGCCC 62.554 72.222 0.00 0.00 0.00 6.13
1731 2103 4.899239 CGATGCTCCTGTCCCGCC 62.899 72.222 0.00 0.00 0.00 6.13
1732 2104 3.838271 TCGATGCTCCTGTCCCGC 61.838 66.667 0.00 0.00 0.00 6.13
1733 2105 2.105128 GTCGATGCTCCTGTCCCG 59.895 66.667 0.00 0.00 0.00 5.14
1734 2106 2.105128 CGTCGATGCTCCTGTCCC 59.895 66.667 0.00 0.00 0.00 4.46
1735 2107 1.064946 CTCGTCGATGCTCCTGTCC 59.935 63.158 0.00 0.00 0.00 4.02
1736 2108 1.587613 GCTCGTCGATGCTCCTGTC 60.588 63.158 0.00 0.00 0.00 3.51
1737 2109 2.492090 GCTCGTCGATGCTCCTGT 59.508 61.111 0.00 0.00 0.00 4.00
1738 2110 2.653448 CGCTCGTCGATGCTCCTG 60.653 66.667 0.00 0.00 41.67 3.86
1739 2111 2.824489 TCGCTCGTCGATGCTCCT 60.824 61.111 0.00 0.00 43.16 3.69
1746 2118 2.737688 CGTCTTCCTCGCTCGTCGA 61.738 63.158 0.00 0.00 46.29 4.20
1747 2119 2.276743 CGTCTTCCTCGCTCGTCG 60.277 66.667 0.00 0.00 40.15 5.12
1748 2120 1.512310 CACGTCTTCCTCGCTCGTC 60.512 63.158 0.00 0.00 32.47 4.20
1749 2121 2.561885 CACGTCTTCCTCGCTCGT 59.438 61.111 0.00 0.00 35.12 4.18
1750 2122 2.202492 CCACGTCTTCCTCGCTCG 60.202 66.667 0.00 0.00 0.00 5.03
1751 2123 0.733223 GAACCACGTCTTCCTCGCTC 60.733 60.000 0.00 0.00 0.00 5.03
1752 2124 1.289380 GAACCACGTCTTCCTCGCT 59.711 57.895 0.00 0.00 0.00 4.93
1753 2125 0.389948 ATGAACCACGTCTTCCTCGC 60.390 55.000 0.00 0.00 0.00 5.03
1754 2126 1.350193 CATGAACCACGTCTTCCTCG 58.650 55.000 0.00 0.00 0.00 4.63
1755 2127 1.079503 GCATGAACCACGTCTTCCTC 58.920 55.000 0.00 0.00 0.00 3.71
1756 2128 0.687354 AGCATGAACCACGTCTTCCT 59.313 50.000 0.00 0.00 0.00 3.36
1757 2129 0.798776 CAGCATGAACCACGTCTTCC 59.201 55.000 0.00 0.00 39.69 3.46
1758 2130 1.461127 GACAGCATGAACCACGTCTTC 59.539 52.381 0.00 0.00 39.69 2.87
1759 2131 1.512926 GACAGCATGAACCACGTCTT 58.487 50.000 0.00 0.00 39.69 3.01
1760 2132 0.667487 CGACAGCATGAACCACGTCT 60.667 55.000 0.00 0.00 39.69 4.18
1761 2133 1.626654 CCGACAGCATGAACCACGTC 61.627 60.000 0.00 0.00 39.69 4.34
1762 2134 1.667830 CCGACAGCATGAACCACGT 60.668 57.895 0.00 0.00 39.69 4.49
1763 2135 3.027170 GCCGACAGCATGAACCACG 62.027 63.158 0.00 0.00 42.97 4.94
1764 2136 2.870372 GCCGACAGCATGAACCAC 59.130 61.111 0.00 0.00 42.97 4.16
1765 2137 2.723586 TTCGCCGACAGCATGAACCA 62.724 55.000 0.00 0.00 44.04 3.67
1766 2138 1.970917 CTTCGCCGACAGCATGAACC 61.971 60.000 0.00 0.00 44.04 3.62
1767 2139 1.014044 TCTTCGCCGACAGCATGAAC 61.014 55.000 0.00 0.00 44.04 3.18
1768 2140 0.108186 ATCTTCGCCGACAGCATGAA 60.108 50.000 0.00 0.00 44.04 2.57
1769 2141 0.807275 CATCTTCGCCGACAGCATGA 60.807 55.000 0.00 0.00 44.04 3.07
1770 2142 1.640069 CATCTTCGCCGACAGCATG 59.360 57.895 0.00 0.00 44.04 4.06
1771 2143 1.522355 CCATCTTCGCCGACAGCAT 60.522 57.895 0.00 0.00 44.04 3.79
1772 2144 2.125552 CCATCTTCGCCGACAGCA 60.126 61.111 0.00 0.00 44.04 4.41
1773 2145 3.567797 GCCATCTTCGCCGACAGC 61.568 66.667 0.00 0.00 38.52 4.40
1774 2146 2.892425 GGCCATCTTCGCCGACAG 60.892 66.667 0.00 0.00 36.47 3.51
1780 2152 3.885521 GCAGCAGGCCATCTTCGC 61.886 66.667 5.01 0.00 36.11 4.70
1781 2153 1.748122 AAGCAGCAGGCCATCTTCG 60.748 57.895 5.01 0.00 46.50 3.79
1782 2154 0.964358 ACAAGCAGCAGGCCATCTTC 60.964 55.000 5.01 0.00 46.50 2.87
1783 2155 0.541296 AACAAGCAGCAGGCCATCTT 60.541 50.000 5.01 0.00 46.50 2.40
1784 2156 0.964358 GAACAAGCAGCAGGCCATCT 60.964 55.000 5.01 0.00 46.50 2.90
1785 2157 0.964358 AGAACAAGCAGCAGGCCATC 60.964 55.000 5.01 0.00 46.50 3.51
1786 2158 0.964358 GAGAACAAGCAGCAGGCCAT 60.964 55.000 5.01 0.00 46.50 4.40
1787 2159 1.601759 GAGAACAAGCAGCAGGCCA 60.602 57.895 5.01 0.00 46.50 5.36
1788 2160 2.338785 GGAGAACAAGCAGCAGGCC 61.339 63.158 0.00 0.00 46.50 5.19
1789 2161 2.684843 CGGAGAACAAGCAGCAGGC 61.685 63.158 0.00 0.00 45.30 4.85
1790 2162 2.684843 GCGGAGAACAAGCAGCAGG 61.685 63.158 0.00 0.00 0.00 4.85
1791 2163 1.962822 TGCGGAGAACAAGCAGCAG 60.963 57.895 0.00 0.00 35.81 4.24
1792 2164 2.110835 TGCGGAGAACAAGCAGCA 59.889 55.556 0.00 0.00 35.81 4.41
1795 2167 3.043713 CGCTGCGGAGAACAAGCA 61.044 61.111 15.40 0.00 39.25 3.91
1806 2178 1.626654 AATTCTTCACGACCGCTGCG 61.627 55.000 16.34 16.34 0.00 5.18
1807 2179 0.179215 CAATTCTTCACGACCGCTGC 60.179 55.000 0.00 0.00 0.00 5.25
1808 2180 1.428448 TCAATTCTTCACGACCGCTG 58.572 50.000 0.00 0.00 0.00 5.18
1809 2181 1.798813 GTTCAATTCTTCACGACCGCT 59.201 47.619 0.00 0.00 0.00 5.52
1810 2182 1.461888 CGTTCAATTCTTCACGACCGC 60.462 52.381 0.00 0.00 34.49 5.68
1811 2183 2.055838 TCGTTCAATTCTTCACGACCG 58.944 47.619 0.00 0.00 36.76 4.79
1814 2186 1.454276 GCGTCGTTCAATTCTTCACGA 59.546 47.619 0.00 0.00 39.27 4.35
1815 2187 1.778568 CGCGTCGTTCAATTCTTCACG 60.779 52.381 0.00 0.00 0.00 4.35
1816 2188 1.191647 ACGCGTCGTTCAATTCTTCAC 59.808 47.619 5.58 0.00 36.35 3.18
1817 2189 1.191425 CACGCGTCGTTCAATTCTTCA 59.809 47.619 9.86 0.00 38.32 3.02
1818 2190 1.191647 ACACGCGTCGTTCAATTCTTC 59.808 47.619 9.86 0.00 38.32 2.87
1819 2191 1.070843 CACACGCGTCGTTCAATTCTT 60.071 47.619 9.86 0.00 38.32 2.52
1820 2192 0.506932 CACACGCGTCGTTCAATTCT 59.493 50.000 9.86 0.00 38.32 2.40
1821 2193 1.052768 GCACACGCGTCGTTCAATTC 61.053 55.000 9.86 0.00 38.32 2.17
1822 2194 1.083015 GCACACGCGTCGTTCAATT 60.083 52.632 9.86 0.00 38.32 2.32
1823 2195 1.565156 ATGCACACGCGTCGTTCAAT 61.565 50.000 9.86 2.22 42.97 2.57
1824 2196 2.241190 ATGCACACGCGTCGTTCAA 61.241 52.632 9.86 0.00 42.97 2.69
1825 2197 2.660224 ATGCACACGCGTCGTTCA 60.660 55.556 9.86 12.57 42.97 3.18
1826 2198 2.202046 CATGCACACGCGTCGTTC 60.202 61.111 9.86 6.65 42.97 3.95
1827 2199 3.711842 CCATGCACACGCGTCGTT 61.712 61.111 9.86 0.00 42.97 3.85
1830 2202 4.450122 CTGCCATGCACACGCGTC 62.450 66.667 9.86 0.00 42.97 5.19
1833 2205 2.745884 TACCTGCCATGCACACGC 60.746 61.111 0.00 0.00 33.79 5.34
1834 2206 2.739704 CGTACCTGCCATGCACACG 61.740 63.158 0.00 0.00 33.79 4.49
1835 2207 0.390603 TACGTACCTGCCATGCACAC 60.391 55.000 0.00 0.00 33.79 3.82
1836 2208 0.108377 CTACGTACCTGCCATGCACA 60.108 55.000 0.00 0.00 33.79 4.57
1837 2209 0.810031 CCTACGTACCTGCCATGCAC 60.810 60.000 0.00 0.00 33.79 4.57
1838 2210 1.520192 CCTACGTACCTGCCATGCA 59.480 57.895 0.00 0.00 36.92 3.96
1839 2211 1.887707 GCCTACGTACCTGCCATGC 60.888 63.158 0.00 0.00 0.00 4.06
1840 2212 0.530650 CAGCCTACGTACCTGCCATG 60.531 60.000 5.77 0.00 0.00 3.66
1841 2213 1.823295 CAGCCTACGTACCTGCCAT 59.177 57.895 5.77 0.00 0.00 4.40
1842 2214 3.014085 GCAGCCTACGTACCTGCCA 62.014 63.158 23.36 0.00 44.60 4.92
1843 2215 2.202892 GCAGCCTACGTACCTGCC 60.203 66.667 23.36 11.82 44.60 4.85
1845 2217 1.519455 GCTGCAGCCTACGTACCTG 60.519 63.158 28.76 12.09 34.31 4.00
1846 2218 1.949847 CTGCTGCAGCCTACGTACCT 61.950 60.000 34.64 0.00 41.18 3.08
1847 2219 1.519455 CTGCTGCAGCCTACGTACC 60.519 63.158 34.64 5.72 41.18 3.34
1848 2220 4.094684 CTGCTGCAGCCTACGTAC 57.905 61.111 34.64 6.50 41.18 3.67
1862 2234 0.099082 GCTCAAGATGAAGCTGCTGC 59.901 55.000 1.35 7.62 40.05 5.25
1863 2235 1.398739 CAGCTCAAGATGAAGCTGCTG 59.601 52.381 11.01 6.81 39.66 4.41
1864 2236 1.679336 CCAGCTCAAGATGAAGCTGCT 60.679 52.381 16.79 0.00 42.17 4.24
1865 2237 0.733729 CCAGCTCAAGATGAAGCTGC 59.266 55.000 16.79 0.00 42.17 5.25
1866 2238 2.110901 ACCAGCTCAAGATGAAGCTG 57.889 50.000 15.59 15.59 42.64 4.24
1867 2239 2.305343 AGAACCAGCTCAAGATGAAGCT 59.695 45.455 0.00 0.00 33.38 3.74
1868 2240 2.419324 CAGAACCAGCTCAAGATGAAGC 59.581 50.000 0.00 0.00 32.25 3.86
1869 2241 3.008330 CCAGAACCAGCTCAAGATGAAG 58.992 50.000 0.00 0.00 32.25 3.02
1870 2242 2.290514 CCCAGAACCAGCTCAAGATGAA 60.291 50.000 0.00 0.00 32.25 2.57
1871 2243 1.280133 CCCAGAACCAGCTCAAGATGA 59.720 52.381 0.00 0.00 32.25 2.92
1872 2244 1.004044 ACCCAGAACCAGCTCAAGATG 59.996 52.381 0.00 0.00 0.00 2.90
1873 2245 1.004044 CACCCAGAACCAGCTCAAGAT 59.996 52.381 0.00 0.00 0.00 2.40
1874 2246 0.397941 CACCCAGAACCAGCTCAAGA 59.602 55.000 0.00 0.00 0.00 3.02
1875 2247 1.239968 GCACCCAGAACCAGCTCAAG 61.240 60.000 0.00 0.00 0.00 3.02
1876 2248 1.228245 GCACCCAGAACCAGCTCAA 60.228 57.895 0.00 0.00 0.00 3.02
1877 2249 2.431683 GCACCCAGAACCAGCTCA 59.568 61.111 0.00 0.00 0.00 4.26
1878 2250 2.360475 GGCACCCAGAACCAGCTC 60.360 66.667 0.00 0.00 0.00 4.09
1879 2251 1.207488 TATGGCACCCAGAACCAGCT 61.207 55.000 0.00 0.00 36.75 4.24
1880 2252 0.323360 TTATGGCACCCAGAACCAGC 60.323 55.000 0.00 0.00 36.75 4.85
1881 2253 2.214376 TTTATGGCACCCAGAACCAG 57.786 50.000 0.00 0.00 34.27 4.00
1882 2254 2.524306 CTTTTATGGCACCCAGAACCA 58.476 47.619 0.00 0.00 34.27 3.67
1883 2255 1.824852 CCTTTTATGGCACCCAGAACC 59.175 52.381 0.00 0.00 34.27 3.62
1884 2256 2.231235 CACCTTTTATGGCACCCAGAAC 59.769 50.000 0.00 0.00 34.27 3.01
1885 2257 2.109128 TCACCTTTTATGGCACCCAGAA 59.891 45.455 0.00 0.00 36.75 3.02
1886 2258 1.707989 TCACCTTTTATGGCACCCAGA 59.292 47.619 0.00 0.00 36.75 3.86
1887 2259 2.214376 TCACCTTTTATGGCACCCAG 57.786 50.000 0.00 0.00 36.75 4.45
1888 2260 2.524306 CTTCACCTTTTATGGCACCCA 58.476 47.619 0.00 0.00 38.19 4.51
1889 2261 1.204704 GCTTCACCTTTTATGGCACCC 59.795 52.381 0.00 0.00 0.00 4.61
1890 2262 1.892474 TGCTTCACCTTTTATGGCACC 59.108 47.619 0.00 0.00 0.00 5.01
1891 2263 2.946564 GTGCTTCACCTTTTATGGCAC 58.053 47.619 0.00 0.00 40.91 5.01
1929 2301 3.442273 AGTGGGTGCCGTACAATAAATTG 59.558 43.478 1.13 1.13 43.26 2.32
1930 2302 3.442273 CAGTGGGTGCCGTACAATAAATT 59.558 43.478 0.00 0.00 0.00 1.82
1931 2303 3.013921 CAGTGGGTGCCGTACAATAAAT 58.986 45.455 0.00 0.00 0.00 1.40
1932 2304 2.224572 ACAGTGGGTGCCGTACAATAAA 60.225 45.455 0.00 0.00 0.00 1.40
1933 2305 1.348366 ACAGTGGGTGCCGTACAATAA 59.652 47.619 0.00 0.00 0.00 1.40
1934 2306 0.978151 ACAGTGGGTGCCGTACAATA 59.022 50.000 0.00 0.00 0.00 1.90
1935 2307 0.978151 TACAGTGGGTGCCGTACAAT 59.022 50.000 0.00 0.00 0.00 2.71
1936 2308 0.757512 TTACAGTGGGTGCCGTACAA 59.242 50.000 0.00 0.00 0.00 2.41
1937 2309 0.978151 ATTACAGTGGGTGCCGTACA 59.022 50.000 0.00 0.00 0.00 2.90
1938 2310 1.338389 ACATTACAGTGGGTGCCGTAC 60.338 52.381 0.00 0.00 0.00 3.67
1939 2311 0.978151 ACATTACAGTGGGTGCCGTA 59.022 50.000 0.00 0.00 0.00 4.02
1940 2312 0.605319 CACATTACAGTGGGTGCCGT 60.605 55.000 0.00 0.00 35.88 5.68
1941 2313 0.605319 ACACATTACAGTGGGTGCCG 60.605 55.000 0.00 0.00 43.72 5.69
1942 2314 0.881118 CACACATTACAGTGGGTGCC 59.119 55.000 0.00 0.00 45.49 5.01
1945 2317 1.271379 GGAGCACACATTACAGTGGGT 60.271 52.381 0.00 0.00 44.71 4.51
1946 2318 1.453155 GGAGCACACATTACAGTGGG 58.547 55.000 0.00 0.00 45.66 4.61
1947 2319 1.003580 AGGGAGCACACATTACAGTGG 59.996 52.381 0.00 0.00 43.72 4.00
1948 2320 2.079158 CAGGGAGCACACATTACAGTG 58.921 52.381 0.00 0.00 44.93 3.66
1949 2321 1.977854 TCAGGGAGCACACATTACAGT 59.022 47.619 0.00 0.00 0.00 3.55
1950 2322 2.768253 TCAGGGAGCACACATTACAG 57.232 50.000 0.00 0.00 0.00 2.74
1951 2323 3.774766 AGTATCAGGGAGCACACATTACA 59.225 43.478 0.00 0.00 0.00 2.41
1952 2324 4.408182 AGTATCAGGGAGCACACATTAC 57.592 45.455 0.00 0.00 0.00 1.89
1953 2325 6.747414 AATAGTATCAGGGAGCACACATTA 57.253 37.500 0.00 0.00 0.00 1.90
1954 2326 5.636903 AATAGTATCAGGGAGCACACATT 57.363 39.130 0.00 0.00 0.00 2.71
1955 2327 5.636903 AAATAGTATCAGGGAGCACACAT 57.363 39.130 0.00 0.00 0.00 3.21
1956 2328 6.099701 ACATAAATAGTATCAGGGAGCACACA 59.900 38.462 0.00 0.00 0.00 3.72
1957 2329 6.525629 ACATAAATAGTATCAGGGAGCACAC 58.474 40.000 0.00 0.00 0.00 3.82
1958 2330 6.747414 ACATAAATAGTATCAGGGAGCACA 57.253 37.500 0.00 0.00 0.00 4.57
1959 2331 6.366332 CGAACATAAATAGTATCAGGGAGCAC 59.634 42.308 0.00 0.00 0.00 4.40
1960 2332 6.455647 CGAACATAAATAGTATCAGGGAGCA 58.544 40.000 0.00 0.00 0.00 4.26
1961 2333 5.348997 GCGAACATAAATAGTATCAGGGAGC 59.651 44.000 0.00 0.00 0.00 4.70
1962 2334 6.692486 AGCGAACATAAATAGTATCAGGGAG 58.308 40.000 0.00 0.00 0.00 4.30
1963 2335 6.665992 AGCGAACATAAATAGTATCAGGGA 57.334 37.500 0.00 0.00 0.00 4.20
1964 2336 6.089551 CGAAGCGAACATAAATAGTATCAGGG 59.910 42.308 0.00 0.00 0.00 4.45
1965 2337 7.038926 CGAAGCGAACATAAATAGTATCAGG 57.961 40.000 0.00 0.00 0.00 3.86
1985 2357 2.509845 GCACCTTGCAAAAGCGAAG 58.490 52.632 0.00 0.00 44.26 3.79
1986 2358 4.728058 GCACCTTGCAAAAGCGAA 57.272 50.000 0.00 0.00 44.26 4.70
1995 2367 6.475402 GGTAATAATAATTGTGTGCACCTTGC 59.525 38.462 15.69 2.61 45.29 4.01
1996 2368 7.542890 TGGTAATAATAATTGTGTGCACCTTG 58.457 34.615 15.69 0.00 0.00 3.61
1997 2369 7.710676 TGGTAATAATAATTGTGTGCACCTT 57.289 32.000 15.69 5.40 0.00 3.50
1998 2370 7.710676 TTGGTAATAATAATTGTGTGCACCT 57.289 32.000 15.69 0.00 0.00 4.00
1999 2371 8.247562 TCTTTGGTAATAATAATTGTGTGCACC 58.752 33.333 15.69 6.37 0.00 5.01
2000 2372 9.632807 TTCTTTGGTAATAATAATTGTGTGCAC 57.367 29.630 10.75 10.75 0.00 4.57
2044 2801 6.769512 TCCTACATCCTATATGAACCAAAGC 58.230 40.000 0.00 0.00 0.00 3.51
2167 2944 9.871238 AATAATATTCGACACAACTCTAACAGT 57.129 29.630 0.00 0.00 36.64 3.55
2193 2970 7.015877 AGTCCAACTGTAACCTATCTTTGTACA 59.984 37.037 0.00 0.00 0.00 2.90
2199 2976 6.435292 ACAAGTCCAACTGTAACCTATCTT 57.565 37.500 0.00 0.00 0.00 2.40
2200 2977 6.724905 ACTACAAGTCCAACTGTAACCTATCT 59.275 38.462 0.00 0.00 0.00 1.98
2202 2979 6.930068 ACTACAAGTCCAACTGTAACCTAT 57.070 37.500 0.00 0.00 0.00 2.57
2210 2987 5.614668 CGCAATACAACTACAAGTCCAACTG 60.615 44.000 0.00 0.00 0.00 3.16
2227 3004 8.251721 ACTCCATATCCTATCTAAACGCAATAC 58.748 37.037 0.00 0.00 0.00 1.89
2233 3010 6.072618 ACACGACTCCATATCCTATCTAAACG 60.073 42.308 0.00 0.00 0.00 3.60
2287 3064 7.556635 TCGTGTGTCTATCCCCTCATATATAAG 59.443 40.741 0.00 0.00 0.00 1.73
2298 3075 4.771054 AGGTTATATCGTGTGTCTATCCCC 59.229 45.833 0.00 0.00 0.00 4.81
2318 3095 3.494398 CCGTGCTATTATGTTGGCTAGGT 60.494 47.826 0.00 0.00 0.00 3.08
2372 3163 1.426041 CGCCGCTACAATACACCACC 61.426 60.000 0.00 0.00 0.00 4.61
2376 3167 1.257936 CATGACGCCGCTACAATACAC 59.742 52.381 0.00 0.00 0.00 2.90
2390 3181 2.892425 GCGCTCTTCCCCATGACG 60.892 66.667 0.00 0.00 0.00 4.35
2397 3188 1.069935 GACTATGGGCGCTCTTCCC 59.930 63.158 9.62 0.00 44.17 3.97
2401 3192 2.801631 GCCTGACTATGGGCGCTCT 61.802 63.158 9.62 0.00 38.91 4.09
2410 3201 0.764752 GGCTACAGGGGCCTGACTAT 60.765 60.000 0.84 0.00 46.30 2.12
2420 3211 1.338107 TCACCGATATGGCTACAGGG 58.662 55.000 0.00 0.00 43.94 4.45
2421 3212 2.548067 GGTTCACCGATATGGCTACAGG 60.548 54.545 0.00 0.00 43.94 4.00
2459 3255 2.280797 AACCACACGAGCACGCAT 60.281 55.556 2.62 0.00 43.96 4.73
2475 3272 2.419159 CGATCATCTGAGGACCAAGCAA 60.419 50.000 0.00 0.00 0.00 3.91
2485 3282 2.141517 GGCCATTGTCGATCATCTGAG 58.858 52.381 0.00 0.00 0.00 3.35
2488 3285 1.269988 CGAGGCCATTGTCGATCATCT 60.270 52.381 5.01 0.00 38.50 2.90
2499 3296 4.647564 AGAATATTGATCCGAGGCCATT 57.352 40.909 5.01 0.00 0.00 3.16
2500 3297 5.013079 TGTTAGAATATTGATCCGAGGCCAT 59.987 40.000 5.01 0.00 0.00 4.40


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.