Multiple sequence alignment - TraesCS2D01G000900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2D01G000900 chr2D 100.000 4557 0 0 1 4557 395204 399760 0.000000e+00 8416.0
1 TraesCS2D01G000900 chr2D 82.889 2852 435 34 707 3532 634850031 634852855 0.000000e+00 2514.0
2 TraesCS2D01G000900 chr2D 90.557 1652 140 10 1887 3532 514527 516168 0.000000e+00 2172.0
3 TraesCS2D01G000900 chr2D 85.364 1387 165 21 693 2060 1525559 1524192 0.000000e+00 1402.0
4 TraesCS2D01G000900 chr2D 83.251 1421 197 28 707 2097 475808 477217 0.000000e+00 1267.0
5 TraesCS2D01G000900 chr2D 85.304 1150 142 13 707 1829 513376 514525 0.000000e+00 1162.0
6 TraesCS2D01G000900 chr2D 79.300 1401 258 19 2144 3532 477212 478592 0.000000e+00 952.0
7 TraesCS2D01G000900 chr2D 99.232 521 4 0 4037 4557 13052420 13051900 0.000000e+00 941.0
8 TraesCS2D01G000900 chr2D 76.960 1263 231 44 2054 3290 507156 508384 0.000000e+00 665.0
9 TraesCS2D01G000900 chr2D 75.108 1153 250 24 2154 3289 1524166 1523034 5.260000e-139 505.0
10 TraesCS2D01G000900 chr2D 78.462 455 83 7 1931 2382 693220 692778 2.680000e-72 283.0
11 TraesCS2D01G000900 chr2D 78.820 373 39 21 36 394 512397 512743 9.930000e-52 215.0
12 TraesCS2D01G000900 chr2D 79.344 305 61 2 876 1179 456732 457035 3.570000e-51 213.0
13 TraesCS2D01G000900 chr2D 96.226 106 4 0 3531 3636 516567 516672 1.690000e-39 174.0
14 TraesCS2D01G000900 chr2D 87.075 147 9 4 3833 3974 516912 517053 1.700000e-34 158.0
15 TraesCS2D01G000900 chr2D 93.651 63 4 0 399 461 512916 512978 1.350000e-15 95.3
16 TraesCS2D01G000900 chr2D 90.164 61 6 0 3762 3822 516858 516918 3.780000e-11 80.5
17 TraesCS2D01G000900 chr2D 92.593 54 4 0 527 580 513211 513264 1.360000e-10 78.7
18 TraesCS2D01G000900 chr2D 93.478 46 1 2 3711 3755 516756 516800 2.940000e-07 67.6
19 TraesCS2D01G000900 chr2B 83.862 2615 356 41 707 3289 10839139 10836559 0.000000e+00 2431.0
20 TraesCS2D01G000900 chr2B 80.590 1762 308 21 707 2442 10807129 10805376 0.000000e+00 1328.0
21 TraesCS2D01G000900 chr2B 83.309 1372 187 23 707 2060 10831303 10829956 0.000000e+00 1227.0
22 TraesCS2D01G000900 chr2B 82.362 1372 198 25 707 2050 10721868 10723223 0.000000e+00 1153.0
23 TraesCS2D01G000900 chr2B 85.154 714 95 8 2827 3533 10804967 10804258 0.000000e+00 721.0
24 TraesCS2D01G000900 chr2B 74.068 1153 256 31 2154 3289 10829930 10828804 2.520000e-117 433.0
25 TraesCS2D01G000900 chr2B 93.103 145 8 2 3531 3675 10803865 10803723 1.280000e-50 211.0
26 TraesCS2D01G000900 chr2B 81.500 200 16 11 286 485 10839758 10839580 1.320000e-30 145.0
27 TraesCS2D01G000900 chr2B 80.000 190 22 12 114 295 10839968 10839787 4.790000e-25 126.0
28 TraesCS2D01G000900 chr2B 80.583 206 3 10 3787 3974 10803597 10803411 1.720000e-24 124.0
29 TraesCS2D01G000900 chr2B 74.570 291 58 15 3008 3290 10818444 10818162 3.730000e-21 113.0
30 TraesCS2D01G000900 chr2B 100.000 28 0 0 530 557 10812888 10812861 8.000000e-03 52.8
31 TraesCS2D01G000900 chr3B 79.567 2633 454 51 707 3289 733447532 733444934 0.000000e+00 1805.0
32 TraesCS2D01G000900 chr2A 77.135 2576 520 47 751 3289 565869 563326 0.000000e+00 1430.0
33 TraesCS2D01G000900 chr2A 79.933 1794 332 17 744 2516 584468 582682 0.000000e+00 1293.0
34 TraesCS2D01G000900 chr2A 82.994 1423 203 26 707 2100 764056433 764055021 0.000000e+00 1251.0
35 TraesCS2D01G000900 chr2A 81.798 1324 207 17 756 2060 513492 514800 0.000000e+00 1079.0
36 TraesCS2D01G000900 chr2A 78.944 1401 263 19 2144 3532 764055029 764053649 0.000000e+00 924.0
37 TraesCS2D01G000900 chr2A 84.017 707 111 2 2827 3532 515517 516222 0.000000e+00 678.0
38 TraesCS2D01G000900 chr2A 85.577 104 2 6 3884 3974 516833 516936 3.750000e-16 97.1
39 TraesCS2D01G000900 chr2A 88.889 45 5 0 1441 1485 17599826 17599782 6.370000e-04 56.5
40 TraesCS2D01G000900 chr7B 83.570 1406 194 19 726 2100 683330225 683328826 0.000000e+00 1282.0
41 TraesCS2D01G000900 chr7B 78.327 789 137 21 2774 3533 706084935 706084152 3.190000e-131 479.0
42 TraesCS2D01G000900 chr5D 99.232 521 4 0 4037 4557 553403963 553404483 0.000000e+00 941.0
43 TraesCS2D01G000900 chr5D 98.273 521 9 0 4037 4557 447571739 447571219 0.000000e+00 913.0
44 TraesCS2D01G000900 chr5D 85.496 131 16 3 3405 3533 404468888 404469017 2.860000e-27 134.0
45 TraesCS2D01G000900 chr5D 97.143 35 1 0 4001 4035 560558198 560558164 4.920000e-05 60.2
46 TraesCS2D01G000900 chrUn 99.040 521 5 0 4037 4557 93755229 93754709 0.000000e+00 935.0
47 TraesCS2D01G000900 chrUn 84.789 710 104 3 2827 3532 300262777 300263486 0.000000e+00 710.0
48 TraesCS2D01G000900 chrUn 85.507 69 2 5 3702 3763 312411039 312411106 1.060000e-06 65.8
49 TraesCS2D01G000900 chrUn 97.143 35 1 0 4001 4035 58645812 58645846 4.920000e-05 60.2
50 TraesCS2D01G000900 chr7D 99.040 521 5 0 4037 4557 100675721 100676241 0.000000e+00 935.0
51 TraesCS2D01G000900 chr7D 97.143 35 1 0 4001 4035 38869074 38869108 4.920000e-05 60.2
52 TraesCS2D01G000900 chr1D 98.848 521 6 0 4037 4557 41872826 41873346 0.000000e+00 929.0
53 TraesCS2D01G000900 chr1D 98.656 521 7 0 4037 4557 30527603 30528123 0.000000e+00 924.0
54 TraesCS2D01G000900 chr1D 98.464 521 8 0 4037 4557 408589469 408588949 0.000000e+00 918.0
55 TraesCS2D01G000900 chr1D 98.464 521 7 1 4037 4557 415774570 415775089 0.000000e+00 917.0
56 TraesCS2D01G000900 chr1D 100.000 35 0 0 4001 4035 359496118 359496084 1.060000e-06 65.8
57 TraesCS2D01G000900 chr1D 100.000 34 0 0 4002 4035 359484796 359484763 3.810000e-06 63.9
58 TraesCS2D01G000900 chr6A 77.732 732 138 19 1676 2401 1408831 1409543 4.210000e-115 425.0
59 TraesCS2D01G000900 chr6A 78.660 403 79 5 817 1216 766269 766667 1.260000e-65 261.0
60 TraesCS2D01G000900 chr3D 100.000 33 0 0 4003 4035 598632027 598631995 1.370000e-05 62.1
61 TraesCS2D01G000900 chr7A 97.143 35 1 0 4001 4035 724270148 724270182 4.920000e-05 60.2
62 TraesCS2D01G000900 chr4A 97.143 35 1 0 4001 4035 574707822 574707788 4.920000e-05 60.2
63 TraesCS2D01G000900 chr1A 97.143 35 1 0 4001 4035 504923536 504923570 4.920000e-05 60.2


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2D01G000900 chr2D 395204 399760 4556 False 8416.000000 8416 100.000000 1 4557 1 chr2D.!!$F1 4556
1 TraesCS2D01G000900 chr2D 634850031 634852855 2824 False 2514.000000 2514 82.889000 707 3532 1 chr2D.!!$F4 2825
2 TraesCS2D01G000900 chr2D 475808 478592 2784 False 1109.500000 1267 81.275500 707 3532 2 chr2D.!!$F5 2825
3 TraesCS2D01G000900 chr2D 1523034 1525559 2525 True 953.500000 1402 80.236000 693 3289 2 chr2D.!!$R3 2596
4 TraesCS2D01G000900 chr2D 13051900 13052420 520 True 941.000000 941 99.232000 4037 4557 1 chr2D.!!$R2 520
5 TraesCS2D01G000900 chr2D 507156 508384 1228 False 665.000000 665 76.960000 2054 3290 1 chr2D.!!$F3 1236
6 TraesCS2D01G000900 chr2D 512397 517053 4656 False 467.011111 2172 89.763111 36 3974 9 chr2D.!!$F6 3938
7 TraesCS2D01G000900 chr2B 10721868 10723223 1355 False 1153.000000 1153 82.362000 707 2050 1 chr2B.!!$F1 1343
8 TraesCS2D01G000900 chr2B 10836559 10839968 3409 True 900.666667 2431 81.787333 114 3289 3 chr2B.!!$R5 3175
9 TraesCS2D01G000900 chr2B 10828804 10831303 2499 True 830.000000 1227 78.688500 707 3289 2 chr2B.!!$R4 2582
10 TraesCS2D01G000900 chr2B 10803411 10807129 3718 True 596.000000 1328 84.857500 707 3974 4 chr2B.!!$R3 3267
11 TraesCS2D01G000900 chr3B 733444934 733447532 2598 True 1805.000000 1805 79.567000 707 3289 1 chr3B.!!$R1 2582
12 TraesCS2D01G000900 chr2A 563326 565869 2543 True 1430.000000 1430 77.135000 751 3289 1 chr2A.!!$R1 2538
13 TraesCS2D01G000900 chr2A 582682 584468 1786 True 1293.000000 1293 79.933000 744 2516 1 chr2A.!!$R2 1772
14 TraesCS2D01G000900 chr2A 764053649 764056433 2784 True 1087.500000 1251 80.969000 707 3532 2 chr2A.!!$R4 2825
15 TraesCS2D01G000900 chr2A 513492 516936 3444 False 618.033333 1079 83.797333 756 3974 3 chr2A.!!$F1 3218
16 TraesCS2D01G000900 chr7B 683328826 683330225 1399 True 1282.000000 1282 83.570000 726 2100 1 chr7B.!!$R1 1374
17 TraesCS2D01G000900 chr7B 706084152 706084935 783 True 479.000000 479 78.327000 2774 3533 1 chr7B.!!$R2 759
18 TraesCS2D01G000900 chr5D 553403963 553404483 520 False 941.000000 941 99.232000 4037 4557 1 chr5D.!!$F2 520
19 TraesCS2D01G000900 chr5D 447571219 447571739 520 True 913.000000 913 98.273000 4037 4557 1 chr5D.!!$R1 520
20 TraesCS2D01G000900 chrUn 93754709 93755229 520 True 935.000000 935 99.040000 4037 4557 1 chrUn.!!$R1 520
21 TraesCS2D01G000900 chrUn 300262777 300263486 709 False 710.000000 710 84.789000 2827 3532 1 chrUn.!!$F2 705
22 TraesCS2D01G000900 chr7D 100675721 100676241 520 False 935.000000 935 99.040000 4037 4557 1 chr7D.!!$F2 520
23 TraesCS2D01G000900 chr1D 41872826 41873346 520 False 929.000000 929 98.848000 4037 4557 1 chr1D.!!$F2 520
24 TraesCS2D01G000900 chr1D 30527603 30528123 520 False 924.000000 924 98.656000 4037 4557 1 chr1D.!!$F1 520
25 TraesCS2D01G000900 chr1D 408588949 408589469 520 True 918.000000 918 98.464000 4037 4557 1 chr1D.!!$R3 520
26 TraesCS2D01G000900 chr1D 415774570 415775089 519 False 917.000000 917 98.464000 4037 4557 1 chr1D.!!$F3 520
27 TraesCS2D01G000900 chr6A 1408831 1409543 712 False 425.000000 425 77.732000 1676 2401 1 chr6A.!!$F2 725

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
41 42 0.035056 AATAGGTCAGCACACCAGCC 60.035 55.0 6.84 0.0 39.16 4.85 F
1455 2098 0.106015 GGGCCACCCATGCTTCTAAT 60.106 55.0 4.39 0.0 44.65 1.73 F
2748 3478 0.462047 ACTGCCATTGGTAGTAGCGC 60.462 55.0 23.08 0.0 46.31 5.92 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1620 2266 1.066286 GGATGCACAACAGAGCTCTCT 60.066 52.381 14.96 0.0 41.37 3.10 R
2750 3480 0.035458 GGAGGACCCATTATCTGCGG 59.965 60.000 0.00 0.0 34.14 5.69 R
3986 5524 0.036388 CCATGGGAGTTGCACTACGT 60.036 55.000 2.85 0.0 26.61 3.57 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
21 22 2.105477 TCCTCCTTCATCTGGCATAAGC 59.895 50.000 0.00 0.00 41.10 3.09
22 23 2.158711 CCTCCTTCATCTGGCATAAGCA 60.159 50.000 0.00 0.00 44.61 3.91
23 24 3.548770 CTCCTTCATCTGGCATAAGCAA 58.451 45.455 0.00 0.00 44.61 3.91
24 25 4.142790 CTCCTTCATCTGGCATAAGCAAT 58.857 43.478 0.00 0.00 44.61 3.56
25 26 5.308976 TCCTTCATCTGGCATAAGCAATA 57.691 39.130 0.00 0.00 44.61 1.90
26 27 5.311265 TCCTTCATCTGGCATAAGCAATAG 58.689 41.667 0.00 0.00 44.61 1.73
27 28 4.458295 CCTTCATCTGGCATAAGCAATAGG 59.542 45.833 0.00 0.00 44.61 2.57
28 29 4.712051 TCATCTGGCATAAGCAATAGGT 57.288 40.909 0.00 0.00 44.61 3.08
29 30 4.645535 TCATCTGGCATAAGCAATAGGTC 58.354 43.478 0.00 0.00 44.61 3.85
30 31 4.102996 TCATCTGGCATAAGCAATAGGTCA 59.897 41.667 0.00 0.00 44.61 4.02
31 32 4.077300 TCTGGCATAAGCAATAGGTCAG 57.923 45.455 8.87 8.87 46.65 3.51
32 33 2.551459 CTGGCATAAGCAATAGGTCAGC 59.449 50.000 3.44 0.00 40.66 4.26
33 34 2.092484 TGGCATAAGCAATAGGTCAGCA 60.092 45.455 0.00 0.00 44.61 4.41
34 35 2.291741 GGCATAAGCAATAGGTCAGCAC 59.708 50.000 0.00 0.00 44.61 4.40
35 36 2.945008 GCATAAGCAATAGGTCAGCACA 59.055 45.455 0.00 0.00 41.58 4.57
36 37 3.242870 GCATAAGCAATAGGTCAGCACAC 60.243 47.826 0.00 0.00 41.58 3.82
37 38 1.826385 AAGCAATAGGTCAGCACACC 58.174 50.000 0.00 0.00 36.58 4.16
38 39 0.692476 AGCAATAGGTCAGCACACCA 59.308 50.000 6.84 0.00 39.16 4.17
39 40 1.089920 GCAATAGGTCAGCACACCAG 58.910 55.000 6.84 0.00 39.16 4.00
40 41 1.089920 CAATAGGTCAGCACACCAGC 58.910 55.000 6.84 0.00 39.16 4.85
41 42 0.035056 AATAGGTCAGCACACCAGCC 60.035 55.000 6.84 0.00 39.16 4.85
42 43 0.911525 ATAGGTCAGCACACCAGCCT 60.912 55.000 6.84 0.00 39.16 4.58
43 44 0.252057 TAGGTCAGCACACCAGCCTA 60.252 55.000 6.84 0.00 39.16 3.93
89 90 7.549839 ACTATTAATACGGTTCTTGTGCTACA 58.450 34.615 0.00 0.00 0.00 2.74
90 91 8.202137 ACTATTAATACGGTTCTTGTGCTACAT 58.798 33.333 0.00 0.00 0.00 2.29
91 92 9.687210 CTATTAATACGGTTCTTGTGCTACATA 57.313 33.333 0.00 0.00 0.00 2.29
92 93 7.997107 TTAATACGGTTCTTGTGCTACATAG 57.003 36.000 0.00 0.00 0.00 2.23
93 94 3.955650 ACGGTTCTTGTGCTACATAGT 57.044 42.857 0.00 0.00 0.00 2.12
142 146 6.226787 TGCAGTTTCTTTTCTTTCCAAAACA 58.773 32.000 0.00 0.00 0.00 2.83
211 215 8.648693 ACAATTACTCTCTTGTGGTAACTAACT 58.351 33.333 0.00 0.00 34.43 2.24
232 237 3.575506 CAGGTGGGAGCTGCAATTA 57.424 52.632 7.79 0.00 36.88 1.40
233 238 1.838112 CAGGTGGGAGCTGCAATTAA 58.162 50.000 7.79 0.00 36.88 1.40
236 241 3.026694 AGGTGGGAGCTGCAATTAAATC 58.973 45.455 7.79 0.00 0.00 2.17
237 242 2.760092 GGTGGGAGCTGCAATTAAATCA 59.240 45.455 7.79 0.00 0.00 2.57
238 243 3.385755 GGTGGGAGCTGCAATTAAATCAT 59.614 43.478 7.79 0.00 0.00 2.45
239 244 4.500375 GGTGGGAGCTGCAATTAAATCATC 60.500 45.833 7.79 0.00 0.00 2.92
240 245 4.340381 GTGGGAGCTGCAATTAAATCATCT 59.660 41.667 7.79 0.00 0.00 2.90
243 248 5.068198 GGGAGCTGCAATTAAATCATCTTGA 59.932 40.000 7.79 0.00 0.00 3.02
244 249 6.207213 GGAGCTGCAATTAAATCATCTTGAG 58.793 40.000 0.00 0.00 0.00 3.02
245 250 5.589192 AGCTGCAATTAAATCATCTTGAGC 58.411 37.500 1.02 0.00 0.00 4.26
246 251 5.360144 AGCTGCAATTAAATCATCTTGAGCT 59.640 36.000 1.02 0.00 32.43 4.09
248 253 5.345702 TGCAATTAAATCATCTTGAGCTGC 58.654 37.500 0.00 0.00 0.00 5.25
250 255 5.808540 GCAATTAAATCATCTTGAGCTGCAA 59.191 36.000 1.02 0.00 34.73 4.08
251 256 6.311935 GCAATTAAATCATCTTGAGCTGCAAA 59.688 34.615 1.02 0.00 35.74 3.68
276 286 3.876914 TGATCGATGGGTTAGATTTGTGC 59.123 43.478 0.54 0.00 0.00 4.57
288 298 4.675190 AGATTTGTGCATCTTCTTGTCG 57.325 40.909 0.00 0.00 28.19 4.35
300 346 0.601057 TCTTGTCGTCATGCCTCGAA 59.399 50.000 8.50 0.00 37.81 3.71
356 402 3.503827 CATGCATGCAATTCTCACACT 57.496 42.857 26.68 0.00 0.00 3.55
357 403 4.625972 CATGCATGCAATTCTCACACTA 57.374 40.909 26.68 0.00 0.00 2.74
412 626 8.191446 ACGTTATATATGTATGTCAGAGATGGC 58.809 37.037 0.00 0.00 0.00 4.40
451 665 9.921637 TTGGTTCTTGAATAAAATTGTCATACC 57.078 29.630 0.00 0.00 0.00 2.73
468 682 6.884295 TGTCATACCTTCAAGATTTGGTTAGG 59.116 38.462 0.00 0.00 34.33 2.69
509 1032 3.658757 AACACACCATAACACATTGGC 57.341 42.857 0.00 0.00 36.41 4.52
557 1108 4.100963 ACACAGACACTCAAACTATGGTCA 59.899 41.667 0.00 0.00 0.00 4.02
558 1109 5.056480 CACAGACACTCAAACTATGGTCAA 58.944 41.667 0.00 0.00 0.00 3.18
560 1111 5.056480 CAGACACTCAAACTATGGTCAACA 58.944 41.667 0.00 0.00 0.00 3.33
561 1112 5.178252 CAGACACTCAAACTATGGTCAACAG 59.822 44.000 0.00 0.00 0.00 3.16
581 1132 2.743636 GCTTACTGTGAGCCTACACA 57.256 50.000 13.09 8.32 46.45 3.72
582 1133 2.338500 GCTTACTGTGAGCCTACACAC 58.662 52.381 13.09 0.00 44.29 3.82
583 1134 2.288825 GCTTACTGTGAGCCTACACACA 60.289 50.000 13.09 0.00 44.29 3.72
587 1138 1.408969 TGTGAGCCTACACACAGACA 58.591 50.000 0.00 0.00 44.29 3.41
590 1141 1.068588 TGAGCCTACACACAGACACAC 59.931 52.381 0.00 0.00 0.00 3.82
591 1142 1.068588 GAGCCTACACACAGACACACA 59.931 52.381 0.00 0.00 0.00 3.72
592 1143 1.069204 AGCCTACACACAGACACACAG 59.931 52.381 0.00 0.00 0.00 3.66
594 1145 2.743938 CCTACACACAGACACACAGAC 58.256 52.381 0.00 0.00 0.00 3.51
596 1147 2.010145 ACACACAGACACACAGACAC 57.990 50.000 0.00 0.00 0.00 3.67
597 1148 1.550524 ACACACAGACACACAGACACT 59.449 47.619 0.00 0.00 0.00 3.55
598 1149 2.196749 CACACAGACACACAGACACTC 58.803 52.381 0.00 0.00 0.00 3.51
599 1150 1.824852 ACACAGACACACAGACACTCA 59.175 47.619 0.00 0.00 0.00 3.41
600 1151 2.233676 ACACAGACACACAGACACTCAA 59.766 45.455 0.00 0.00 0.00 3.02
601 1152 3.261580 CACAGACACACAGACACTCAAA 58.738 45.455 0.00 0.00 0.00 2.69
603 1154 3.684788 ACAGACACACAGACACTCAAAAC 59.315 43.478 0.00 0.00 0.00 2.43
604 1155 3.935203 CAGACACACAGACACTCAAAACT 59.065 43.478 0.00 0.00 0.00 2.66
605 1156 5.109210 CAGACACACAGACACTCAAAACTA 58.891 41.667 0.00 0.00 0.00 2.24
606 1157 5.005779 CAGACACACAGACACTCAAAACTAC 59.994 44.000 0.00 0.00 0.00 2.73
607 1158 3.863424 ACACACAGACACTCAAAACTACG 59.137 43.478 0.00 0.00 0.00 3.51
608 1159 3.245284 CACACAGACACTCAAAACTACGG 59.755 47.826 0.00 0.00 0.00 4.02
609 1160 3.131577 ACACAGACACTCAAAACTACGGA 59.868 43.478 0.00 0.00 0.00 4.69
610 1161 3.489785 CACAGACACTCAAAACTACGGAC 59.510 47.826 0.00 0.00 0.00 4.79
611 1162 3.131577 ACAGACACTCAAAACTACGGACA 59.868 43.478 0.00 0.00 0.00 4.02
612 1163 3.736252 CAGACACTCAAAACTACGGACAG 59.264 47.826 0.00 0.00 0.00 3.51
613 1164 2.475487 GACACTCAAAACTACGGACAGC 59.525 50.000 0.00 0.00 0.00 4.40
614 1165 2.159014 ACACTCAAAACTACGGACAGCA 60.159 45.455 0.00 0.00 0.00 4.41
615 1166 2.221055 CACTCAAAACTACGGACAGCAC 59.779 50.000 0.00 0.00 0.00 4.40
616 1167 2.159014 ACTCAAAACTACGGACAGCACA 60.159 45.455 0.00 0.00 0.00 4.57
617 1168 3.067106 CTCAAAACTACGGACAGCACAT 58.933 45.455 0.00 0.00 0.00 3.21
618 1169 4.242475 CTCAAAACTACGGACAGCACATA 58.758 43.478 0.00 0.00 0.00 2.29
619 1170 4.827692 TCAAAACTACGGACAGCACATAT 58.172 39.130 0.00 0.00 0.00 1.78
620 1171 5.968254 TCAAAACTACGGACAGCACATATA 58.032 37.500 0.00 0.00 0.00 0.86
621 1172 6.040247 TCAAAACTACGGACAGCACATATAG 58.960 40.000 0.00 0.00 0.00 1.31
622 1173 5.593679 AAACTACGGACAGCACATATAGT 57.406 39.130 0.00 0.00 0.00 2.12
623 1174 5.593679 AACTACGGACAGCACATATAGTT 57.406 39.130 0.00 0.00 0.00 2.24
624 1175 6.704289 AACTACGGACAGCACATATAGTTA 57.296 37.500 0.00 0.00 31.39 2.24
625 1176 6.315091 ACTACGGACAGCACATATAGTTAG 57.685 41.667 0.00 0.00 0.00 2.34
626 1177 5.826737 ACTACGGACAGCACATATAGTTAGT 59.173 40.000 0.00 0.00 0.00 2.24
627 1178 4.933330 ACGGACAGCACATATAGTTAGTG 58.067 43.478 0.00 0.00 36.39 2.74
628 1179 4.401519 ACGGACAGCACATATAGTTAGTGT 59.598 41.667 0.00 0.00 35.75 3.55
629 1180 4.976731 CGGACAGCACATATAGTTAGTGTC 59.023 45.833 0.00 0.00 35.75 3.67
630 1181 5.290386 GGACAGCACATATAGTTAGTGTCC 58.710 45.833 9.42 9.42 41.20 4.02
631 1182 5.163447 GGACAGCACATATAGTTAGTGTCCA 60.163 44.000 16.13 0.00 44.19 4.02
632 1183 6.463049 GGACAGCACATATAGTTAGTGTCCAT 60.463 42.308 16.13 0.00 44.19 3.41
633 1184 6.516718 ACAGCACATATAGTTAGTGTCCATC 58.483 40.000 0.00 0.00 35.75 3.51
634 1185 5.928839 CAGCACATATAGTTAGTGTCCATCC 59.071 44.000 0.00 0.00 35.75 3.51
635 1186 5.841237 AGCACATATAGTTAGTGTCCATCCT 59.159 40.000 0.00 0.00 35.75 3.24
636 1187 6.327626 AGCACATATAGTTAGTGTCCATCCTT 59.672 38.462 0.00 0.00 35.75 3.36
637 1188 6.992715 GCACATATAGTTAGTGTCCATCCTTT 59.007 38.462 0.00 0.00 35.75 3.11
638 1189 7.041780 GCACATATAGTTAGTGTCCATCCTTTG 60.042 40.741 0.00 0.00 35.75 2.77
640 1191 3.073274 AGTTAGTGTCCATCCTTTGGC 57.927 47.619 0.00 0.00 46.01 4.52
641 1192 2.644798 AGTTAGTGTCCATCCTTTGGCT 59.355 45.455 0.00 0.00 46.01 4.75
642 1193 3.844211 AGTTAGTGTCCATCCTTTGGCTA 59.156 43.478 0.00 0.00 46.01 3.93
643 1194 4.475016 AGTTAGTGTCCATCCTTTGGCTAT 59.525 41.667 0.00 0.00 46.01 2.97
644 1195 5.665812 AGTTAGTGTCCATCCTTTGGCTATA 59.334 40.000 0.00 0.00 46.01 1.31
645 1196 6.157994 AGTTAGTGTCCATCCTTTGGCTATAA 59.842 38.462 0.00 0.00 46.01 0.98
646 1197 4.781934 AGTGTCCATCCTTTGGCTATAAC 58.218 43.478 0.00 0.00 46.01 1.89
647 1198 3.560068 GTGTCCATCCTTTGGCTATAACG 59.440 47.826 0.00 0.00 46.01 3.18
648 1199 3.452990 TGTCCATCCTTTGGCTATAACGA 59.547 43.478 0.00 0.00 46.01 3.85
649 1200 4.058817 GTCCATCCTTTGGCTATAACGAG 58.941 47.826 0.00 0.00 46.01 4.18
651 1202 4.407621 TCCATCCTTTGGCTATAACGAGAA 59.592 41.667 0.00 0.00 46.01 2.87
654 1205 5.263968 TCCTTTGGCTATAACGAGAAGAG 57.736 43.478 0.00 0.00 0.00 2.85
1056 1666 0.332632 TCAAAGGGGCAGATGAAGGG 59.667 55.000 0.00 0.00 0.00 3.95
1111 1721 7.490725 CAGAGATCTATCAGGTTGTACAACAAG 59.509 40.741 33.42 25.52 39.00 3.16
1117 1727 6.619801 ATCAGGTTGTACAACAAGAGAAAC 57.380 37.500 33.42 17.30 39.00 2.78
1235 1863 2.043450 AGGGAGGCTCCGACTCAG 60.043 66.667 26.54 0.00 39.95 3.35
1251 1879 4.202264 CGACTCAGCCCAGGAATTAGTAAT 60.202 45.833 0.00 0.00 0.00 1.89
1292 1920 7.337942 ACATCCTTTTCTTTATCATGACTGGAC 59.662 37.037 0.00 0.00 0.00 4.02
1299 1927 5.645067 TCTTTATCATGACTGGACTGCTTTG 59.355 40.000 0.00 0.00 0.00 2.77
1369 2009 6.054860 ACACAGATAAGCTTGGTGAAGTAT 57.945 37.500 21.38 2.31 33.82 2.12
1455 2098 0.106015 GGGCCACCCATGCTTCTAAT 60.106 55.000 4.39 0.00 44.65 1.73
1840 2498 2.027192 TGCCAGGATCTACAACCAGAAC 60.027 50.000 0.00 0.00 0.00 3.01
1908 2584 6.475504 CCTATGGGTGATAGACATATGCAAA 58.524 40.000 1.58 0.00 36.84 3.68
2074 2750 2.525592 CCCACTTCCCCTTGGCAA 59.474 61.111 0.00 0.00 0.00 4.52
2416 3098 3.317711 CAGGCACATTGGTCAAAACACTA 59.682 43.478 0.00 0.00 0.00 2.74
2432 3114 6.672266 AAACACTAGACCTCAAAGATCAGA 57.328 37.500 0.00 0.00 0.00 3.27
2445 3127 0.879400 GATCAGATGGTGCAGGCTCG 60.879 60.000 0.00 0.00 0.00 5.03
2449 3131 1.219124 GATGGTGCAGGCTCGAAGA 59.781 57.895 0.00 0.00 0.00 2.87
2534 3216 6.438741 TGGGATGCCAAAAGATACATTGTTAA 59.561 34.615 2.13 0.00 0.00 2.01
2641 3362 8.258708 ACCTTGGTATTAGAGAGTAATGTTGAC 58.741 37.037 0.00 0.00 0.00 3.18
2671 3398 6.049955 TGGAAGAGTACTAGGTTCCATTTG 57.950 41.667 21.74 0.00 42.82 2.32
2674 3401 6.819146 GGAAGAGTACTAGGTTCCATTTGAAG 59.181 42.308 19.46 0.00 38.70 3.02
2685 3412 3.620488 TCCATTTGAAGCTATGTGTCCC 58.380 45.455 0.00 0.00 0.00 4.46
2686 3413 3.010027 TCCATTTGAAGCTATGTGTCCCA 59.990 43.478 0.00 0.00 0.00 4.37
2687 3414 3.379372 CCATTTGAAGCTATGTGTCCCAG 59.621 47.826 0.00 0.00 0.00 4.45
2710 3437 4.022849 GCTTGTAGCAACAAAGTTGAGGAT 60.023 41.667 13.58 0.00 44.79 3.24
2748 3478 0.462047 ACTGCCATTGGTAGTAGCGC 60.462 55.000 23.08 0.00 46.31 5.92
2749 3479 0.461870 CTGCCATTGGTAGTAGCGCA 60.462 55.000 11.47 0.00 30.75 6.09
2750 3480 0.742990 TGCCATTGGTAGTAGCGCAC 60.743 55.000 11.47 5.97 0.00 5.34
2751 3481 1.436983 GCCATTGGTAGTAGCGCACC 61.437 60.000 11.47 9.24 35.24 5.01
2816 3552 4.765273 TGCTTACATCACGTACATGGATT 58.235 39.130 10.55 0.00 0.00 3.01
2818 3554 5.645929 TGCTTACATCACGTACATGGATTTT 59.354 36.000 10.55 0.00 0.00 1.82
2819 3555 6.819146 TGCTTACATCACGTACATGGATTTTA 59.181 34.615 10.55 0.00 0.00 1.52
2825 3561 7.497579 ACATCACGTACATGGATTTTATTGCTA 59.502 33.333 10.55 0.00 0.00 3.49
2943 3680 0.997932 GAGAGCACACGAGCAATGAG 59.002 55.000 0.00 0.00 36.85 2.90
3002 3739 0.865111 TGTGCACGACAATTCTTCCG 59.135 50.000 13.13 0.00 0.00 4.30
3019 3759 1.807165 CGTCAGCACTGTCATCCCG 60.807 63.158 0.00 0.00 0.00 5.14
3036 3776 1.612991 CCCGGAACACATGATGTCCAA 60.613 52.381 0.73 0.00 42.31 3.53
3216 3959 2.161211 GCAAAGAGAGGACACTCAATGC 59.839 50.000 0.00 0.00 46.44 3.56
3298 4041 2.092681 CACATTTGTCCTCGTGATGTCG 59.907 50.000 0.00 0.00 0.00 4.35
3299 4042 1.660607 CATTTGTCCTCGTGATGTCGG 59.339 52.381 0.00 0.00 0.00 4.79
3328 4071 2.050144 ACCTTGAGAAGCTTGGAGACA 58.950 47.619 2.10 0.00 39.83 3.41
3338 4081 3.825328 AGCTTGGAGACACTTCACATTT 58.175 40.909 0.00 0.00 42.67 2.32
3340 4083 3.817647 GCTTGGAGACACTTCACATTTCT 59.182 43.478 0.00 0.00 42.67 2.52
3355 4098 6.506147 TCACATTTCTTTTTGTGGTGATCTG 58.494 36.000 3.49 0.00 42.72 2.90
3359 4102 4.705110 TCTTTTTGTGGTGATCTGAGGA 57.295 40.909 0.00 0.00 0.00 3.71
3590 4767 4.987408 TGCATTCGGTGATCAATTCATT 57.013 36.364 0.00 0.00 36.54 2.57
3605 4782 5.472820 TCAATTCATTTGTTTTGGCATTCCC 59.527 36.000 0.00 0.00 36.65 3.97
3628 4805 3.880490 TGTGTTGTGTAGGTTTGATGGAC 59.120 43.478 0.00 0.00 0.00 4.02
3646 4844 4.968197 GGATGGCCGACGTATCTC 57.032 61.111 0.00 0.00 0.00 2.75
3675 4878 1.529244 ACCCTTCACACTGCAAGCC 60.529 57.895 0.00 0.00 37.60 4.35
3679 4882 1.342174 CCTTCACACTGCAAGCCAAAT 59.658 47.619 0.00 0.00 37.60 2.32
3682 4885 1.068895 TCACACTGCAAGCCAAATTGG 59.931 47.619 7.84 7.84 41.55 3.16
3683 4886 0.393820 ACACTGCAAGCCAAATTGGG 59.606 50.000 14.59 0.00 38.19 4.12
3693 4896 3.192541 GCCAAATTGGGTGTGTTTTCT 57.807 42.857 14.59 0.00 38.19 2.52
3694 4897 3.540617 GCCAAATTGGGTGTGTTTTCTT 58.459 40.909 14.59 0.00 38.19 2.52
3695 4898 3.312146 GCCAAATTGGGTGTGTTTTCTTG 59.688 43.478 14.59 0.00 38.19 3.02
3696 4899 3.312146 CCAAATTGGGTGTGTTTTCTTGC 59.688 43.478 3.60 0.00 32.67 4.01
3697 4900 2.908688 ATTGGGTGTGTTTTCTTGCC 57.091 45.000 0.00 0.00 0.00 4.52
3698 4901 1.561643 TTGGGTGTGTTTTCTTGCCA 58.438 45.000 0.00 0.00 0.00 4.92
3699 4902 1.561643 TGGGTGTGTTTTCTTGCCAA 58.438 45.000 0.00 0.00 0.00 4.52
3700 4903 1.480137 TGGGTGTGTTTTCTTGCCAAG 59.520 47.619 0.00 0.00 0.00 3.61
3701 4904 1.754226 GGGTGTGTTTTCTTGCCAAGA 59.246 47.619 2.24 2.24 35.26 3.02
3702 4905 2.365293 GGGTGTGTTTTCTTGCCAAGAT 59.635 45.455 8.18 0.00 37.38 2.40
3703 4906 3.383761 GGTGTGTTTTCTTGCCAAGATG 58.616 45.455 8.18 0.00 37.38 2.90
3704 4907 3.383761 GTGTGTTTTCTTGCCAAGATGG 58.616 45.455 8.18 0.00 41.55 3.51
3705 4908 3.030291 TGTGTTTTCTTGCCAAGATGGT 58.970 40.909 8.18 0.00 40.46 3.55
3706 4909 3.181477 TGTGTTTTCTTGCCAAGATGGTG 60.181 43.478 8.18 0.00 40.46 4.17
3707 4910 2.364970 TGTTTTCTTGCCAAGATGGTGG 59.635 45.455 8.18 0.00 40.46 4.61
3708 4911 2.627699 GTTTTCTTGCCAAGATGGTGGA 59.372 45.455 8.18 0.00 41.65 4.02
3709 4912 2.673775 TTCTTGCCAAGATGGTGGAA 57.326 45.000 8.18 0.00 41.65 3.53
3715 4918 1.203052 GCCAAGATGGTGGAATGTGTG 59.797 52.381 0.00 0.00 41.65 3.82
3716 4919 2.517959 CCAAGATGGTGGAATGTGTGT 58.482 47.619 0.00 0.00 41.65 3.72
3719 4922 4.549458 CAAGATGGTGGAATGTGTGTTTC 58.451 43.478 0.00 0.00 0.00 2.78
3767 5024 1.865788 TTGCTTGATGCCGCAAGACC 61.866 55.000 16.97 3.90 46.31 3.85
3782 5039 5.989168 CCGCAAGACCTATGTATCATTGTTA 59.011 40.000 0.00 0.00 43.02 2.41
3787 5044 9.383519 CAAGACCTATGTATCATTGTTAGTGTT 57.616 33.333 0.00 0.00 0.00 3.32
3872 5389 7.482654 TGTTATTCATATTCAGTACAGCAGC 57.517 36.000 0.00 0.00 0.00 5.25
3875 5392 9.208022 GTTATTCATATTCAGTACAGCAGCATA 57.792 33.333 0.00 0.00 0.00 3.14
3876 5393 7.902387 ATTCATATTCAGTACAGCAGCATAG 57.098 36.000 0.00 0.00 0.00 2.23
3877 5394 5.233225 TCATATTCAGTACAGCAGCATAGC 58.767 41.667 0.00 0.00 0.00 2.97
3878 5395 3.548745 ATTCAGTACAGCAGCATAGCA 57.451 42.857 0.00 0.00 36.85 3.49
3879 5396 3.548745 TTCAGTACAGCAGCATAGCAT 57.451 42.857 0.00 0.00 36.85 3.79
3880 5397 2.830104 TCAGTACAGCAGCATAGCATG 58.170 47.619 0.00 0.00 36.85 4.06
3881 5398 2.169144 TCAGTACAGCAGCATAGCATGT 59.831 45.455 0.00 0.00 36.85 3.21
3882 5399 2.287103 CAGTACAGCAGCATAGCATGTG 59.713 50.000 0.00 0.00 36.85 3.21
3883 5400 2.093288 AGTACAGCAGCATAGCATGTGT 60.093 45.455 0.00 0.00 36.85 3.72
3920 5441 0.675633 AATGCAAGGCTTGGTGTGAC 59.324 50.000 27.25 10.90 0.00 3.67
3978 5516 9.675464 TTTATTTGGTTCCATTACCTAGTGTAG 57.325 33.333 0.00 0.00 39.04 2.74
3979 5517 6.938698 TTTGGTTCCATTACCTAGTGTAGA 57.061 37.500 0.00 0.00 39.04 2.59
3980 5518 6.938698 TTGGTTCCATTACCTAGTGTAGAA 57.061 37.500 0.00 0.00 39.04 2.10
3981 5519 6.938698 TGGTTCCATTACCTAGTGTAGAAA 57.061 37.500 0.00 0.00 39.04 2.52
3982 5520 6.942976 TGGTTCCATTACCTAGTGTAGAAAG 58.057 40.000 0.00 0.00 39.04 2.62
3983 5521 6.727231 TGGTTCCATTACCTAGTGTAGAAAGA 59.273 38.462 0.00 0.00 39.04 2.52
3984 5522 7.236019 TGGTTCCATTACCTAGTGTAGAAAGAA 59.764 37.037 0.00 0.00 39.04 2.52
3985 5523 8.265764 GGTTCCATTACCTAGTGTAGAAAGAAT 58.734 37.037 0.00 0.00 35.23 2.40
3988 5526 8.627403 TCCATTACCTAGTGTAGAAAGAATACG 58.373 37.037 0.00 0.00 0.00 3.06
3989 5527 8.411683 CCATTACCTAGTGTAGAAAGAATACGT 58.588 37.037 0.00 0.00 0.00 3.57
3993 5531 7.983307 ACCTAGTGTAGAAAGAATACGTAGTG 58.017 38.462 0.00 0.00 45.73 2.74
3994 5532 6.911511 CCTAGTGTAGAAAGAATACGTAGTGC 59.088 42.308 0.00 0.00 45.73 4.40
3995 5533 6.263516 AGTGTAGAAAGAATACGTAGTGCA 57.736 37.500 0.00 0.00 45.73 4.57
3996 5534 6.684686 AGTGTAGAAAGAATACGTAGTGCAA 58.315 36.000 0.00 0.00 45.73 4.08
3997 5535 6.585322 AGTGTAGAAAGAATACGTAGTGCAAC 59.415 38.462 0.00 0.00 45.73 4.17
4014 5552 4.034246 CTCCCATGGAGTCGGTCA 57.966 61.111 15.22 0.00 44.25 4.02
4015 5553 1.517832 CTCCCATGGAGTCGGTCAC 59.482 63.158 15.22 0.00 44.25 3.67
4016 5554 1.229051 TCCCATGGAGTCGGTCACA 60.229 57.895 15.22 0.00 0.00 3.58
4017 5555 0.834261 TCCCATGGAGTCGGTCACAA 60.834 55.000 15.22 0.00 0.00 3.33
4018 5556 0.253044 CCCATGGAGTCGGTCACAAT 59.747 55.000 15.22 0.00 0.00 2.71
4019 5557 1.484653 CCCATGGAGTCGGTCACAATA 59.515 52.381 15.22 0.00 0.00 1.90
4020 5558 2.104792 CCCATGGAGTCGGTCACAATAT 59.895 50.000 15.22 0.00 0.00 1.28
4021 5559 3.323691 CCCATGGAGTCGGTCACAATATA 59.676 47.826 15.22 0.00 0.00 0.86
4022 5560 4.020218 CCCATGGAGTCGGTCACAATATAT 60.020 45.833 15.22 0.00 0.00 0.86
4023 5561 5.186992 CCCATGGAGTCGGTCACAATATATA 59.813 44.000 15.22 0.00 0.00 0.86
4024 5562 6.100004 CCATGGAGTCGGTCACAATATATAC 58.900 44.000 5.56 0.00 0.00 1.47
4025 5563 6.295067 CCATGGAGTCGGTCACAATATATACA 60.295 42.308 5.56 0.00 0.00 2.29
4026 5564 6.080648 TGGAGTCGGTCACAATATATACAC 57.919 41.667 0.00 0.00 0.00 2.90
4027 5565 5.595133 TGGAGTCGGTCACAATATATACACA 59.405 40.000 0.00 0.00 0.00 3.72
4028 5566 6.150318 GGAGTCGGTCACAATATATACACAG 58.850 44.000 0.00 0.00 0.00 3.66
4029 5567 6.085555 AGTCGGTCACAATATATACACAGG 57.914 41.667 0.00 0.00 0.00 4.00
4030 5568 5.831525 AGTCGGTCACAATATATACACAGGA 59.168 40.000 0.00 0.00 0.00 3.86
4031 5569 6.493802 AGTCGGTCACAATATATACACAGGAT 59.506 38.462 0.00 0.00 0.00 3.24
4032 5570 6.586463 GTCGGTCACAATATATACACAGGATG 59.414 42.308 0.00 0.00 46.00 3.51
4054 5592 2.769663 TCACCATACGCCCTCATTAGTT 59.230 45.455 0.00 0.00 0.00 2.24
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 2.105477 GCTTATGCCAGATGAAGGAGGA 59.895 50.000 0.00 0.00 0.00 3.71
3 4 3.650281 TTGCTTATGCCAGATGAAGGA 57.350 42.857 0.00 0.00 38.71 3.36
4 5 4.458295 CCTATTGCTTATGCCAGATGAAGG 59.542 45.833 0.00 0.00 38.71 3.46
6 7 5.052693 ACCTATTGCTTATGCCAGATGAA 57.947 39.130 0.00 0.00 38.71 2.57
7 8 4.102996 TGACCTATTGCTTATGCCAGATGA 59.897 41.667 0.00 0.00 38.71 2.92
8 9 4.392047 TGACCTATTGCTTATGCCAGATG 58.608 43.478 0.00 0.00 38.71 2.90
10 11 3.745480 GCTGACCTATTGCTTATGCCAGA 60.745 47.826 0.00 0.00 38.71 3.86
11 12 2.551459 GCTGACCTATTGCTTATGCCAG 59.449 50.000 0.00 0.00 38.71 4.85
12 13 2.092484 TGCTGACCTATTGCTTATGCCA 60.092 45.455 0.00 0.00 38.71 4.92
13 14 2.291741 GTGCTGACCTATTGCTTATGCC 59.708 50.000 0.00 0.00 38.71 4.40
14 15 2.945008 TGTGCTGACCTATTGCTTATGC 59.055 45.455 0.00 0.00 40.20 3.14
15 16 3.313526 GGTGTGCTGACCTATTGCTTATG 59.686 47.826 0.00 0.00 32.69 1.90
16 17 3.054434 TGGTGTGCTGACCTATTGCTTAT 60.054 43.478 6.32 0.00 36.88 1.73
17 18 2.304470 TGGTGTGCTGACCTATTGCTTA 59.696 45.455 6.32 0.00 36.88 3.09
18 19 1.073763 TGGTGTGCTGACCTATTGCTT 59.926 47.619 6.32 0.00 36.88 3.91
19 20 0.692476 TGGTGTGCTGACCTATTGCT 59.308 50.000 6.32 0.00 36.88 3.91
20 21 1.089920 CTGGTGTGCTGACCTATTGC 58.910 55.000 6.32 0.00 36.88 3.56
21 22 1.089920 GCTGGTGTGCTGACCTATTG 58.910 55.000 6.32 0.00 36.88 1.90
22 23 0.035056 GGCTGGTGTGCTGACCTATT 60.035 55.000 6.32 0.00 36.88 1.73
23 24 0.911525 AGGCTGGTGTGCTGACCTAT 60.912 55.000 6.32 0.00 36.88 2.57
24 25 0.252057 TAGGCTGGTGTGCTGACCTA 60.252 55.000 0.00 0.00 36.88 3.08
25 26 1.536418 TAGGCTGGTGTGCTGACCT 60.536 57.895 0.00 0.00 36.88 3.85
26 27 1.376037 GTAGGCTGGTGTGCTGACC 60.376 63.158 0.00 0.00 36.43 4.02
27 28 0.671781 CAGTAGGCTGGTGTGCTGAC 60.672 60.000 0.00 0.00 39.01 3.51
28 29 0.831711 TCAGTAGGCTGGTGTGCTGA 60.832 55.000 0.00 0.00 42.78 4.26
29 30 0.251354 ATCAGTAGGCTGGTGTGCTG 59.749 55.000 0.00 0.00 42.78 4.41
30 31 0.987294 AATCAGTAGGCTGGTGTGCT 59.013 50.000 0.00 0.00 42.78 4.40
31 32 2.691409 TAATCAGTAGGCTGGTGTGC 57.309 50.000 0.00 0.00 42.78 4.57
32 33 3.055094 ACCTTAATCAGTAGGCTGGTGTG 60.055 47.826 0.00 0.00 42.78 3.82
33 34 3.182152 ACCTTAATCAGTAGGCTGGTGT 58.818 45.455 0.00 0.00 42.78 4.16
34 35 3.914426 ACCTTAATCAGTAGGCTGGTG 57.086 47.619 0.00 0.00 42.78 4.17
35 36 4.621769 AGTACCTTAATCAGTAGGCTGGT 58.378 43.478 0.00 0.00 42.78 4.00
36 37 6.493802 TGATAGTACCTTAATCAGTAGGCTGG 59.506 42.308 0.00 0.00 42.78 4.85
37 38 7.526142 TGATAGTACCTTAATCAGTAGGCTG 57.474 40.000 0.00 0.00 43.87 4.85
38 39 8.548880 TTTGATAGTACCTTAATCAGTAGGCT 57.451 34.615 0.00 0.00 34.79 4.58
39 40 9.043079 GTTTTGATAGTACCTTAATCAGTAGGC 57.957 37.037 0.00 0.00 34.79 3.93
59 60 8.231837 GCACAAGAACCGTATTAATAGTTTTGA 58.768 33.333 17.43 0.00 0.00 2.69
72 73 6.704289 ATACTATGTAGCACAAGAACCGTA 57.296 37.500 0.00 0.00 0.00 4.02
164 168 9.906660 AATTGTTACTCGAAGCATAATGAAAAA 57.093 25.926 0.00 0.00 0.00 1.94
166 170 9.982291 GTAATTGTTACTCGAAGCATAATGAAA 57.018 29.630 0.00 0.00 33.37 2.69
167 171 9.378551 AGTAATTGTTACTCGAAGCATAATGAA 57.621 29.630 0.00 0.00 42.62 2.57
168 172 8.942338 AGTAATTGTTACTCGAAGCATAATGA 57.058 30.769 0.00 0.00 42.62 2.57
182 186 8.828688 AGTTACCACAAGAGAGTAATTGTTAC 57.171 34.615 0.00 0.00 37.54 2.50
209 213 3.719121 CAGCTCCCACCTGCTAGT 58.281 61.111 0.00 0.00 37.81 2.57
230 235 8.089597 TCAAATTTGCAGCTCAAGATGATTTAA 58.910 29.630 13.54 0.00 35.84 1.52
232 237 6.460781 TCAAATTTGCAGCTCAAGATGATTT 58.539 32.000 13.54 0.00 35.84 2.17
233 238 6.032956 TCAAATTTGCAGCTCAAGATGATT 57.967 33.333 13.54 0.00 35.84 2.57
236 241 4.499399 CGATCAAATTTGCAGCTCAAGATG 59.501 41.667 13.54 0.00 35.84 2.90
237 242 4.397103 TCGATCAAATTTGCAGCTCAAGAT 59.603 37.500 13.54 0.00 35.84 2.40
238 243 3.752747 TCGATCAAATTTGCAGCTCAAGA 59.247 39.130 13.54 1.95 35.84 3.02
239 244 4.087510 TCGATCAAATTTGCAGCTCAAG 57.912 40.909 13.54 0.00 35.84 3.02
240 245 4.417506 CATCGATCAAATTTGCAGCTCAA 58.582 39.130 13.54 0.00 0.00 3.02
243 248 2.100252 CCCATCGATCAAATTTGCAGCT 59.900 45.455 13.54 0.00 0.00 4.24
244 249 2.159198 ACCCATCGATCAAATTTGCAGC 60.159 45.455 13.54 4.79 0.00 5.25
245 250 3.788333 ACCCATCGATCAAATTTGCAG 57.212 42.857 13.54 7.10 0.00 4.41
246 251 4.946772 TCTAACCCATCGATCAAATTTGCA 59.053 37.500 13.54 3.26 0.00 4.08
248 253 7.975616 ACAAATCTAACCCATCGATCAAATTTG 59.024 33.333 12.15 12.15 36.77 2.32
250 255 7.483307 CACAAATCTAACCCATCGATCAAATT 58.517 34.615 0.00 0.00 0.00 1.82
251 256 6.460123 GCACAAATCTAACCCATCGATCAAAT 60.460 38.462 0.00 0.00 0.00 2.32
276 286 2.606725 GAGGCATGACGACAAGAAGATG 59.393 50.000 0.00 0.00 0.00 2.90
288 298 3.179443 TCATACCTTTCGAGGCATGAC 57.821 47.619 0.00 0.00 36.95 3.06
300 346 5.242434 TGTACGCAGACAAATTCATACCTT 58.758 37.500 0.00 0.00 0.00 3.50
446 660 6.659242 ACACCTAACCAAATCTTGAAGGTATG 59.341 38.462 0.00 0.00 36.56 2.39
451 665 6.633500 TGAACACCTAACCAAATCTTGAAG 57.367 37.500 0.00 0.00 0.00 3.02
462 676 2.025699 TGGGGCTAATGAACACCTAACC 60.026 50.000 0.00 0.00 0.00 2.85
468 682 1.917872 TGGTTGGGGCTAATGAACAC 58.082 50.000 0.00 0.00 0.00 3.32
520 1043 1.535028 TCTGTGTGTTAATTGCAGGCG 59.465 47.619 0.00 0.00 0.00 5.52
521 1044 2.293122 TGTCTGTGTGTTAATTGCAGGC 59.707 45.455 0.00 0.00 32.97 4.85
522 1045 3.565482 AGTGTCTGTGTGTTAATTGCAGG 59.435 43.478 0.00 0.00 0.00 4.85
523 1046 4.273235 TGAGTGTCTGTGTGTTAATTGCAG 59.727 41.667 0.00 0.00 0.00 4.41
524 1047 4.195416 TGAGTGTCTGTGTGTTAATTGCA 58.805 39.130 0.00 0.00 0.00 4.08
525 1048 4.811555 TGAGTGTCTGTGTGTTAATTGC 57.188 40.909 0.00 0.00 0.00 3.56
580 1131 2.584492 TGAGTGTCTGTGTGTCTGTG 57.416 50.000 0.00 0.00 0.00 3.66
581 1132 3.610040 TTTGAGTGTCTGTGTGTCTGT 57.390 42.857 0.00 0.00 0.00 3.41
582 1133 3.935203 AGTTTTGAGTGTCTGTGTGTCTG 59.065 43.478 0.00 0.00 0.00 3.51
583 1134 4.207891 AGTTTTGAGTGTCTGTGTGTCT 57.792 40.909 0.00 0.00 0.00 3.41
584 1135 4.026804 CGTAGTTTTGAGTGTCTGTGTGTC 60.027 45.833 0.00 0.00 0.00 3.67
585 1136 3.863424 CGTAGTTTTGAGTGTCTGTGTGT 59.137 43.478 0.00 0.00 0.00 3.72
587 1138 3.131577 TCCGTAGTTTTGAGTGTCTGTGT 59.868 43.478 0.00 0.00 0.00 3.72
590 1141 3.713288 TGTCCGTAGTTTTGAGTGTCTG 58.287 45.455 0.00 0.00 0.00 3.51
591 1142 3.799232 GCTGTCCGTAGTTTTGAGTGTCT 60.799 47.826 0.00 0.00 0.00 3.41
592 1143 2.475487 GCTGTCCGTAGTTTTGAGTGTC 59.525 50.000 0.00 0.00 0.00 3.67
594 1145 2.221055 GTGCTGTCCGTAGTTTTGAGTG 59.779 50.000 0.00 0.00 0.00 3.51
596 1147 2.479837 TGTGCTGTCCGTAGTTTTGAG 58.520 47.619 0.00 0.00 0.00 3.02
597 1148 2.605837 TGTGCTGTCCGTAGTTTTGA 57.394 45.000 0.00 0.00 0.00 2.69
598 1149 5.810587 ACTATATGTGCTGTCCGTAGTTTTG 59.189 40.000 0.00 0.00 0.00 2.44
599 1150 5.974108 ACTATATGTGCTGTCCGTAGTTTT 58.026 37.500 0.00 0.00 0.00 2.43
600 1151 5.593679 ACTATATGTGCTGTCCGTAGTTT 57.406 39.130 0.00 0.00 0.00 2.66
601 1152 5.593679 AACTATATGTGCTGTCCGTAGTT 57.406 39.130 0.00 0.00 0.00 2.24
603 1154 6.143496 CACTAACTATATGTGCTGTCCGTAG 58.857 44.000 0.00 0.00 0.00 3.51
604 1155 5.591472 ACACTAACTATATGTGCTGTCCGTA 59.409 40.000 0.00 0.00 35.33 4.02
605 1156 4.401519 ACACTAACTATATGTGCTGTCCGT 59.598 41.667 0.00 0.00 35.33 4.69
606 1157 4.933330 ACACTAACTATATGTGCTGTCCG 58.067 43.478 0.00 0.00 35.33 4.79
607 1158 5.163447 TGGACACTAACTATATGTGCTGTCC 60.163 44.000 6.56 6.56 42.17 4.02
608 1159 5.902681 TGGACACTAACTATATGTGCTGTC 58.097 41.667 0.00 0.00 35.85 3.51
609 1160 5.932619 TGGACACTAACTATATGTGCTGT 57.067 39.130 0.00 0.00 35.85 4.40
610 1161 5.928839 GGATGGACACTAACTATATGTGCTG 59.071 44.000 0.00 0.00 35.85 4.41
611 1162 5.841237 AGGATGGACACTAACTATATGTGCT 59.159 40.000 0.00 0.00 35.85 4.40
612 1163 6.102897 AGGATGGACACTAACTATATGTGC 57.897 41.667 0.00 0.00 35.33 4.57
613 1164 8.370493 CAAAGGATGGACACTAACTATATGTG 57.630 38.462 0.00 0.00 37.67 3.21
630 1181 5.601662 TCTTCTCGTTATAGCCAAAGGATG 58.398 41.667 0.00 0.00 0.00 3.51
631 1182 5.598830 TCTCTTCTCGTTATAGCCAAAGGAT 59.401 40.000 0.00 0.00 0.00 3.24
632 1183 4.954202 TCTCTTCTCGTTATAGCCAAAGGA 59.046 41.667 0.00 0.00 0.00 3.36
633 1184 5.263968 TCTCTTCTCGTTATAGCCAAAGG 57.736 43.478 0.00 0.00 0.00 3.11
634 1185 8.873215 TTATTCTCTTCTCGTTATAGCCAAAG 57.127 34.615 0.00 0.00 0.00 2.77
651 1202 9.516314 GCGCCTAATTTTGTTTTATTATTCTCT 57.484 29.630 0.00 0.00 0.00 3.10
654 1205 8.325282 GGTGCGCCTAATTTTGTTTTATTATTC 58.675 33.333 9.68 0.00 0.00 1.75
665 1216 3.057596 TGAAGAAGGTGCGCCTAATTTTG 60.058 43.478 21.55 0.00 46.33 2.44
675 1226 3.334691 TCTACCAATTGAAGAAGGTGCG 58.665 45.455 7.12 0.00 35.62 5.34
683 1234 6.917533 AGCAGTTTTCATCTACCAATTGAAG 58.082 36.000 7.12 4.23 31.54 3.02
685 1236 7.994425 TTAGCAGTTTTCATCTACCAATTGA 57.006 32.000 7.12 0.00 0.00 2.57
688 1239 7.260603 GCAATTAGCAGTTTTCATCTACCAAT 58.739 34.615 0.00 0.00 44.79 3.16
902 1512 3.448686 ACGTGGATGATCTTGTCGAATC 58.551 45.455 0.00 0.00 0.00 2.52
1023 1633 4.439289 GCCCCTTTGAAATCATCTTCTTCG 60.439 45.833 0.00 0.00 0.00 3.79
1056 1666 4.099266 ACATCTTGTATCTCAGCTCTGGAC 59.901 45.833 0.00 0.00 0.00 4.02
1235 1863 5.070685 CCACCTTATTACTAATTCCTGGGC 58.929 45.833 0.00 0.00 0.00 5.36
1251 1879 8.336235 AGAAAAGGATGTGAATTATCCACCTTA 58.664 33.333 8.18 0.00 45.28 2.69
1271 1899 6.373774 AGCAGTCCAGTCATGATAAAGAAAAG 59.626 38.462 0.00 0.00 0.00 2.27
1292 1920 6.029346 ACAAATAATTCCACCTCAAAGCAG 57.971 37.500 0.00 0.00 0.00 4.24
1299 1927 7.440856 TCTTTTTGCAACAAATAATTCCACCTC 59.559 33.333 0.00 0.00 0.00 3.85
1369 2009 3.258372 AGATACAAGCAACACTCTTCGGA 59.742 43.478 0.00 0.00 0.00 4.55
1455 2098 4.879295 AATCCCATCACAGACCCAATAA 57.121 40.909 0.00 0.00 0.00 1.40
1620 2266 1.066286 GGATGCACAACAGAGCTCTCT 60.066 52.381 14.96 0.00 41.37 3.10
1840 2498 6.791887 TTGTCTATCTTGCTTCTTGTCTTG 57.208 37.500 0.00 0.00 0.00 3.02
2074 2750 4.880759 TGAATTCATCCATTTTGCACGTT 58.119 34.783 3.38 0.00 0.00 3.99
2416 3098 3.370315 GCACCATCTGATCTTTGAGGTCT 60.370 47.826 0.00 0.00 0.00 3.85
2432 3114 1.078848 GTCTTCGAGCCTGCACCAT 60.079 57.895 0.00 0.00 0.00 3.55
2534 3216 5.411831 TGACAGACTGAGCAATCAATACT 57.588 39.130 10.08 0.00 0.00 2.12
2544 3226 2.159234 GCTTGAACATGACAGACTGAGC 59.841 50.000 10.08 0.10 0.00 4.26
2641 3362 6.461788 GGAACCTAGTACTCTTCCAGCATAAG 60.462 46.154 16.69 0.00 0.00 1.73
2644 3365 3.707102 GGAACCTAGTACTCTTCCAGCAT 59.293 47.826 16.69 0.00 0.00 3.79
2647 3368 5.941555 AATGGAACCTAGTACTCTTCCAG 57.058 43.478 23.71 8.57 41.26 3.86
2674 3401 2.555199 CTACAAGCTGGGACACATAGC 58.445 52.381 0.00 0.00 37.71 2.97
2685 3412 4.285292 CTCAACTTTGTTGCTACAAGCTG 58.715 43.478 13.29 11.70 44.56 4.24
2686 3413 3.316308 CCTCAACTTTGTTGCTACAAGCT 59.684 43.478 13.29 0.91 44.56 3.74
2687 3414 3.315191 TCCTCAACTTTGTTGCTACAAGC 59.685 43.478 13.29 0.00 44.56 4.01
2710 3437 5.278463 GGCAGTGTTCTTCTTATTGCTTTGA 60.278 40.000 0.00 0.00 0.00 2.69
2748 3478 0.469917 AGGACCCATTATCTGCGGTG 59.530 55.000 0.00 0.00 31.06 4.94
2749 3479 0.759346 GAGGACCCATTATCTGCGGT 59.241 55.000 0.00 0.00 32.88 5.68
2750 3480 0.035458 GGAGGACCCATTATCTGCGG 59.965 60.000 0.00 0.00 34.14 5.69
2751 3481 1.001406 GAGGAGGACCCATTATCTGCG 59.999 57.143 0.00 0.00 37.41 5.18
2818 3554 9.225436 TCATCAACAGTAATGTTGTTAGCAATA 57.775 29.630 29.11 12.69 46.55 1.90
2819 3555 8.109705 TCATCAACAGTAATGTTGTTAGCAAT 57.890 30.769 29.11 15.40 46.55 3.56
2825 3561 5.477984 AGCCATCATCAACAGTAATGTTGTT 59.522 36.000 29.11 21.14 46.55 2.83
3002 3739 1.448540 CCGGGATGACAGTGCTGAC 60.449 63.158 6.17 0.34 0.00 3.51
3019 3759 5.452078 TTTCTTTGGACATCATGTGTTCC 57.548 39.130 0.00 0.00 42.36 3.62
3036 3776 9.190317 GTTCCCATATAAGTTCCTCATTTTCTT 57.810 33.333 0.00 0.00 0.00 2.52
3216 3959 5.595885 TCGCAAAGGAGAGATTATCTTCAG 58.404 41.667 0.00 0.00 38.84 3.02
3299 4042 4.130286 AGCTTCTCAAGGTGTATAGCAC 57.870 45.455 0.00 0.00 46.97 4.40
3338 4081 4.705110 TCCTCAGATCACCACAAAAAGA 57.295 40.909 0.00 0.00 0.00 2.52
3340 4083 5.067674 CACTTTCCTCAGATCACCACAAAAA 59.932 40.000 0.00 0.00 0.00 1.94
3359 4102 1.228154 GCTCCACGGGGAACACTTT 60.228 57.895 8.34 0.00 44.38 2.66
3403 4146 8.508555 GGAACTCCAATGCACCTTTATGGTTC 62.509 46.154 0.00 0.00 40.93 3.62
3590 4767 2.114616 ACACAGGGAATGCCAAAACAA 58.885 42.857 0.00 0.00 35.15 2.83
3605 4782 4.024048 GTCCATCAAACCTACACAACACAG 60.024 45.833 0.00 0.00 0.00 3.66
3638 4836 0.530744 TGGAAAGCAGCGAGATACGT 59.469 50.000 0.00 0.00 44.60 3.57
3641 4839 0.178068 GGGTGGAAAGCAGCGAGATA 59.822 55.000 0.00 0.00 0.00 1.98
3642 4840 1.078143 GGGTGGAAAGCAGCGAGAT 60.078 57.895 0.00 0.00 0.00 2.75
3646 4844 1.600636 TGAAGGGTGGAAAGCAGCG 60.601 57.895 0.00 0.00 0.00 5.18
3675 4878 3.312146 GGCAAGAAAACACACCCAATTTG 59.688 43.478 0.00 0.00 0.00 2.32
3679 4882 1.561643 TGGCAAGAAAACACACCCAA 58.438 45.000 0.00 0.00 0.00 4.12
3682 4885 3.383761 CATCTTGGCAAGAAAACACACC 58.616 45.455 31.57 0.00 41.63 4.16
3683 4886 3.181476 ACCATCTTGGCAAGAAAACACAC 60.181 43.478 31.57 0.00 42.67 3.82
3692 4895 2.094390 CACATTCCACCATCTTGGCAAG 60.094 50.000 21.17 21.17 42.67 4.01
3693 4896 1.894466 CACATTCCACCATCTTGGCAA 59.106 47.619 0.00 0.00 42.67 4.52
3694 4897 1.203038 ACACATTCCACCATCTTGGCA 60.203 47.619 0.00 0.00 42.67 4.92
3695 4898 1.203052 CACACATTCCACCATCTTGGC 59.797 52.381 0.00 0.00 42.67 4.52
3696 4899 2.517959 ACACACATTCCACCATCTTGG 58.482 47.619 0.00 0.00 45.02 3.61
3697 4900 4.549458 GAAACACACATTCCACCATCTTG 58.451 43.478 0.00 0.00 0.00 3.02
3698 4901 3.573967 GGAAACACACATTCCACCATCTT 59.426 43.478 0.56 0.00 44.70 2.40
3699 4902 3.157087 GGAAACACACATTCCACCATCT 58.843 45.455 0.56 0.00 44.70 2.90
3700 4903 2.231235 GGGAAACACACATTCCACCATC 59.769 50.000 7.53 0.00 46.69 3.51
3701 4904 2.158325 AGGGAAACACACATTCCACCAT 60.158 45.455 7.53 0.00 46.69 3.55
3702 4905 1.216678 AGGGAAACACACATTCCACCA 59.783 47.619 7.53 0.00 46.69 4.17
3703 4906 1.995376 AGGGAAACACACATTCCACC 58.005 50.000 7.53 0.00 46.69 4.61
3704 4907 2.296190 GGAAGGGAAACACACATTCCAC 59.704 50.000 7.53 0.00 46.69 4.02
3705 4908 2.176798 AGGAAGGGAAACACACATTCCA 59.823 45.455 10.21 0.00 46.69 3.53
3706 4909 2.558359 CAGGAAGGGAAACACACATTCC 59.442 50.000 0.00 0.00 44.61 3.01
3707 4910 3.486383 TCAGGAAGGGAAACACACATTC 58.514 45.455 0.00 0.00 0.00 2.67
3708 4911 3.593442 TCAGGAAGGGAAACACACATT 57.407 42.857 0.00 0.00 0.00 2.71
3709 4912 3.138283 TCTTCAGGAAGGGAAACACACAT 59.862 43.478 9.03 0.00 38.88 3.21
3715 4918 7.761038 TTATTCTTTCTTCAGGAAGGGAAAC 57.239 36.000 9.03 0.00 38.88 2.78
3716 4919 8.004801 ACTTTATTCTTTCTTCAGGAAGGGAAA 58.995 33.333 9.03 3.42 38.88 3.13
3719 4922 6.151817 CCACTTTATTCTTTCTTCAGGAAGGG 59.848 42.308 9.03 1.41 38.88 3.95
3782 5039 4.782019 TGAGCAGAAAACAAACAACACT 57.218 36.364 0.00 0.00 0.00 3.55
3787 5044 4.082300 ACACACATGAGCAGAAAACAAACA 60.082 37.500 0.00 0.00 0.00 2.83
3857 5120 4.670896 TGCTATGCTGCTGTACTGAATA 57.329 40.909 3.61 0.00 0.00 1.75
3876 5393 1.593006 GTCCAGCATACGTACACATGC 59.407 52.381 16.99 16.99 46.35 4.06
3877 5394 2.860136 CAGTCCAGCATACGTACACATG 59.140 50.000 0.00 0.00 0.00 3.21
3878 5395 2.758423 TCAGTCCAGCATACGTACACAT 59.242 45.455 0.00 0.00 0.00 3.21
3879 5396 2.163613 CTCAGTCCAGCATACGTACACA 59.836 50.000 0.00 0.00 0.00 3.72
3880 5397 2.422479 TCTCAGTCCAGCATACGTACAC 59.578 50.000 0.00 0.00 0.00 2.90
3881 5398 2.718563 TCTCAGTCCAGCATACGTACA 58.281 47.619 0.00 0.00 0.00 2.90
3882 5399 3.777465 TTCTCAGTCCAGCATACGTAC 57.223 47.619 0.00 0.00 0.00 3.67
3883 5400 3.490933 GCATTCTCAGTCCAGCATACGTA 60.491 47.826 0.00 0.00 0.00 3.57
3974 5512 6.684686 AGTTGCACTACGTATTCTTTCTACA 58.315 36.000 0.00 0.00 0.00 2.74
3975 5513 6.253083 GGAGTTGCACTACGTATTCTTTCTAC 59.747 42.308 0.00 0.00 0.00 2.59
3976 5514 6.327934 GGAGTTGCACTACGTATTCTTTCTA 58.672 40.000 0.00 0.00 0.00 2.10
3977 5515 5.169295 GGAGTTGCACTACGTATTCTTTCT 58.831 41.667 0.00 0.00 0.00 2.52
3978 5516 4.329256 GGGAGTTGCACTACGTATTCTTTC 59.671 45.833 0.00 0.00 26.61 2.62
3979 5517 4.251268 GGGAGTTGCACTACGTATTCTTT 58.749 43.478 0.00 0.00 26.61 2.52
3980 5518 3.259876 TGGGAGTTGCACTACGTATTCTT 59.740 43.478 0.00 0.00 26.61 2.52
3981 5519 2.829720 TGGGAGTTGCACTACGTATTCT 59.170 45.455 0.00 0.00 26.61 2.40
3982 5520 3.241067 TGGGAGTTGCACTACGTATTC 57.759 47.619 0.00 0.00 26.61 1.75
3983 5521 3.531538 CATGGGAGTTGCACTACGTATT 58.468 45.455 0.00 0.00 26.61 1.89
3984 5522 2.158957 CCATGGGAGTTGCACTACGTAT 60.159 50.000 2.85 0.00 26.61 3.06
3985 5523 1.206132 CCATGGGAGTTGCACTACGTA 59.794 52.381 2.85 0.00 26.61 3.57
3986 5524 0.036388 CCATGGGAGTTGCACTACGT 60.036 55.000 2.85 0.00 26.61 3.57
3987 5525 0.249120 TCCATGGGAGTTGCACTACG 59.751 55.000 13.02 0.00 26.61 3.51
3988 5526 2.029838 CTCCATGGGAGTTGCACTAC 57.970 55.000 13.02 0.00 44.25 2.73
3998 5536 0.834261 TTGTGACCGACTCCATGGGA 60.834 55.000 13.02 0.00 0.00 4.37
3999 5537 0.253044 ATTGTGACCGACTCCATGGG 59.747 55.000 13.02 5.22 0.00 4.00
4000 5538 2.979814 TATTGTGACCGACTCCATGG 57.020 50.000 4.97 4.97 0.00 3.66
4001 5539 6.586463 GTGTATATATTGTGACCGACTCCATG 59.414 42.308 0.00 0.00 0.00 3.66
4002 5540 6.266786 TGTGTATATATTGTGACCGACTCCAT 59.733 38.462 0.00 0.00 0.00 3.41
4003 5541 5.595133 TGTGTATATATTGTGACCGACTCCA 59.405 40.000 0.00 0.00 0.00 3.86
4004 5542 6.080648 TGTGTATATATTGTGACCGACTCC 57.919 41.667 0.00 0.00 0.00 3.85
4005 5543 6.016527 TCCTGTGTATATATTGTGACCGACTC 60.017 42.308 0.00 0.00 0.00 3.36
4006 5544 5.831525 TCCTGTGTATATATTGTGACCGACT 59.168 40.000 0.00 0.00 0.00 4.18
4007 5545 6.080648 TCCTGTGTATATATTGTGACCGAC 57.919 41.667 0.00 0.00 0.00 4.79
4008 5546 6.266786 ACATCCTGTGTATATATTGTGACCGA 59.733 38.462 0.00 0.00 39.91 4.69
4009 5547 6.455647 ACATCCTGTGTATATATTGTGACCG 58.544 40.000 0.00 0.00 39.91 4.79
4010 5548 7.385205 GTGACATCCTGTGTATATATTGTGACC 59.615 40.741 0.00 0.00 42.36 4.02
4011 5549 7.385205 GGTGACATCCTGTGTATATATTGTGAC 59.615 40.741 0.00 0.00 42.36 3.67
4012 5550 7.070571 TGGTGACATCCTGTGTATATATTGTGA 59.929 37.037 0.00 0.00 42.36 3.58
4013 5551 7.216494 TGGTGACATCCTGTGTATATATTGTG 58.784 38.462 0.00 0.00 42.36 3.33
4014 5552 7.373617 TGGTGACATCCTGTGTATATATTGT 57.626 36.000 0.00 0.00 42.36 2.71
4032 5570 2.102588 ACTAATGAGGGCGTATGGTGAC 59.897 50.000 0.00 0.00 0.00 3.67
4033 5571 2.394632 ACTAATGAGGGCGTATGGTGA 58.605 47.619 0.00 0.00 0.00 4.02
4034 5572 2.910688 ACTAATGAGGGCGTATGGTG 57.089 50.000 0.00 0.00 0.00 4.17
4035 5573 2.104281 GGAACTAATGAGGGCGTATGGT 59.896 50.000 0.00 0.00 0.00 3.55
4054 5592 0.594110 GCGGTTCGATTGTTTTGGGA 59.406 50.000 0.00 0.00 0.00 4.37


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.