Multiple sequence alignment - TraesCS2D01G000700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2D01G000700 chr2D 100.000 3133 0 0 1 3133 372169 369037 0.000000e+00 5786.0
1 TraesCS2D01G000700 chr2D 83.654 104 13 4 3026 3127 460302872 460302973 9.250000e-16 95.3
2 TraesCS2D01G000700 chr2A 86.757 1835 122 52 1095 2879 474511 472748 0.000000e+00 1930.0
3 TraesCS2D01G000700 chr2A 89.481 694 54 5 1 688 477437 476757 0.000000e+00 859.0
4 TraesCS2D01G000700 chr2A 87.931 58 7 0 2670 2727 735381194 735381137 5.610000e-08 69.4
5 TraesCS2D01G000700 chr2B 90.111 1436 85 36 1130 2534 10868104 10869513 0.000000e+00 1812.0
6 TraesCS2D01G000700 chr2B 93.527 1035 26 13 1 1019 10867053 10868062 0.000000e+00 1502.0
7 TraesCS2D01G000700 chr2B 86.063 287 21 8 2717 2993 10869581 10869858 1.100000e-74 291.0
8 TraesCS2D01G000700 chr5D 84.615 104 15 1 3024 3127 181629949 181630051 5.530000e-18 102.0
9 TraesCS2D01G000700 chr5D 83.654 104 13 4 3026 3127 70057462 70057563 9.250000e-16 95.3
10 TraesCS2D01G000700 chr6D 88.235 85 8 2 3026 3109 354133226 354133309 1.990000e-17 100.0
11 TraesCS2D01G000700 chr6D 83.654 104 13 4 3026 3127 432783568 432783467 9.250000e-16 95.3
12 TraesCS2D01G000700 chr4B 83.495 103 15 2 3026 3127 454560867 454560968 9.250000e-16 95.3
13 TraesCS2D01G000700 chr3D 83.654 104 13 4 3026 3127 259131889 259131990 9.250000e-16 95.3
14 TraesCS2D01G000700 chr3D 82.727 110 15 4 3026 3133 478780040 478780147 9.250000e-16 95.3
15 TraesCS2D01G000700 chr3D 89.796 49 5 0 2230 2278 90352726 90352678 2.610000e-06 63.9
16 TraesCS2D01G000700 chr3A 82.407 108 17 2 3026 3132 481181511 481181617 3.330000e-15 93.5
17 TraesCS2D01G000700 chr7A 83.784 74 12 0 2654 2727 658280396 658280323 1.560000e-08 71.3
18 TraesCS2D01G000700 chr7A 83.784 74 12 0 2654 2727 658284442 658284369 1.560000e-08 71.3
19 TraesCS2D01G000700 chr7D 87.719 57 5 1 2224 2278 377814108 377814052 7.250000e-07 65.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2D01G000700 chr2D 369037 372169 3132 True 5786.000000 5786 100.000000 1 3133 1 chr2D.!!$R1 3132
1 TraesCS2D01G000700 chr2A 472748 477437 4689 True 1394.500000 1930 88.119000 1 2879 2 chr2A.!!$R2 2878
2 TraesCS2D01G000700 chr2B 10867053 10869858 2805 False 1201.666667 1812 89.900333 1 2993 3 chr2B.!!$F1 2992

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
440 445 0.325296 AAGGAGGTAGATCGGCACCA 60.325 55.0 14.24 0.0 37.28 4.17 F
1114 3046 0.167908 GTGTGTGTGTGTGTGTGTGG 59.832 55.0 0.00 0.0 0.00 4.17 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1330 3300 1.931841 CGTCTGCTTGTGATCAGATGG 59.068 52.381 0.00 0.0 40.89 3.51 R
3022 5064 0.037590 TGCGTTGGAGTTGGCCTAAT 59.962 50.000 3.32 0.0 0.00 1.73 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
50 51 2.050350 CGGCTAGACGGGGTCAAGA 61.050 63.158 11.12 0.00 34.60 3.02
146 147 4.704833 ACGCCGCACCATCTGCTT 62.705 61.111 0.00 0.00 44.64 3.91
163 164 0.957395 CTTCGCAGGACAGTGCCATT 60.957 55.000 6.40 0.00 40.62 3.16
175 176 2.030540 CAGTGCCATTGAGACAAACCTG 60.031 50.000 0.00 0.00 0.00 4.00
393 398 1.375523 GACGAACCAGCAACCGGAT 60.376 57.895 9.46 0.00 0.00 4.18
440 445 0.325296 AAGGAGGTAGATCGGCACCA 60.325 55.000 14.24 0.00 37.28 4.17
581 587 7.603784 AGAAATTGACCAGCCATTTATGTTTTC 59.396 33.333 0.00 0.00 0.00 2.29
720 2599 2.484417 CCATCTTCATTGGACCGGAGAG 60.484 54.545 9.46 0.00 36.26 3.20
724 2603 3.519510 TCTTCATTGGACCGGAGAGAAAT 59.480 43.478 9.46 0.00 0.00 2.17
727 2606 6.553476 TCTTCATTGGACCGGAGAGAAATATA 59.447 38.462 9.46 0.00 0.00 0.86
797 2679 6.238320 GCAGTCTGGAATGAGCAAATAAGTAG 60.238 42.308 1.14 0.00 0.00 2.57
894 2787 7.707624 TGAGGAATTAGGAAACTCGTTACTA 57.292 36.000 0.00 0.00 43.67 1.82
930 2823 3.057547 GCCTCGCTCTCTTCTCGCA 62.058 63.158 0.00 0.00 0.00 5.10
946 2847 0.955919 CGCAAACCTTCACTCTCCCC 60.956 60.000 0.00 0.00 0.00 4.81
954 2855 1.006519 CTTCACTCTCCCCCTCTCTCA 59.993 57.143 0.00 0.00 0.00 3.27
1035 2936 1.203313 AGCACCCCCTTTCTCACTCTA 60.203 52.381 0.00 0.00 0.00 2.43
1036 2937 1.066071 GCACCCCCTTTCTCACTCTAC 60.066 57.143 0.00 0.00 0.00 2.59
1037 2938 2.257207 CACCCCCTTTCTCACTCTACA 58.743 52.381 0.00 0.00 0.00 2.74
1038 2939 2.637872 CACCCCCTTTCTCACTCTACAA 59.362 50.000 0.00 0.00 0.00 2.41
1039 2940 3.264450 CACCCCCTTTCTCACTCTACAAT 59.736 47.826 0.00 0.00 0.00 2.71
1041 2942 4.263506 ACCCCCTTTCTCACTCTACAATTG 60.264 45.833 3.24 3.24 0.00 2.32
1043 2944 4.697352 CCCCTTTCTCACTCTACAATTGTG 59.303 45.833 21.42 10.97 0.00 3.33
1045 2946 5.180117 CCCTTTCTCACTCTACAATTGTGTG 59.820 44.000 21.42 19.00 38.82 3.82
1048 2949 5.529581 TCTCACTCTACAATTGTGTGTGA 57.470 39.130 26.28 26.28 38.82 3.58
1050 2951 4.631131 TCACTCTACAATTGTGTGTGAGG 58.369 43.478 25.27 17.56 40.73 3.86
1052 2953 3.244561 ACTCTACAATTGTGTGTGAGGGG 60.245 47.826 21.42 8.88 40.73 4.79
1099 3031 8.988934 AGTGTGTTTATGTTCTACTATTGTGTG 58.011 33.333 0.00 0.00 0.00 3.82
1100 3032 8.770828 GTGTGTTTATGTTCTACTATTGTGTGT 58.229 33.333 0.00 0.00 0.00 3.72
1101 3033 8.769891 TGTGTTTATGTTCTACTATTGTGTGTG 58.230 33.333 0.00 0.00 0.00 3.82
1102 3034 8.770828 GTGTTTATGTTCTACTATTGTGTGTGT 58.229 33.333 0.00 0.00 0.00 3.72
1103 3035 8.769891 TGTTTATGTTCTACTATTGTGTGTGTG 58.230 33.333 0.00 0.00 0.00 3.82
1104 3036 8.770828 GTTTATGTTCTACTATTGTGTGTGTGT 58.229 33.333 0.00 0.00 0.00 3.72
1105 3037 6.785488 ATGTTCTACTATTGTGTGTGTGTG 57.215 37.500 0.00 0.00 0.00 3.82
1106 3038 5.666462 TGTTCTACTATTGTGTGTGTGTGT 58.334 37.500 0.00 0.00 0.00 3.72
1107 3039 5.522097 TGTTCTACTATTGTGTGTGTGTGTG 59.478 40.000 0.00 0.00 0.00 3.82
1108 3040 5.270893 TCTACTATTGTGTGTGTGTGTGT 57.729 39.130 0.00 0.00 0.00 3.72
1109 3041 5.047188 TCTACTATTGTGTGTGTGTGTGTG 58.953 41.667 0.00 0.00 0.00 3.82
1110 3042 3.605634 ACTATTGTGTGTGTGTGTGTGT 58.394 40.909 0.00 0.00 0.00 3.72
1111 3043 2.917701 ATTGTGTGTGTGTGTGTGTG 57.082 45.000 0.00 0.00 0.00 3.82
1112 3044 1.598882 TTGTGTGTGTGTGTGTGTGT 58.401 45.000 0.00 0.00 0.00 3.72
1113 3045 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.000 0.00 0.00 0.00 3.82
1114 3046 0.167908 GTGTGTGTGTGTGTGTGTGG 59.832 55.000 0.00 0.00 0.00 4.17
1115 3047 0.250510 TGTGTGTGTGTGTGTGTGGT 60.251 50.000 0.00 0.00 0.00 4.16
1116 3048 0.878416 GTGTGTGTGTGTGTGTGGTT 59.122 50.000 0.00 0.00 0.00 3.67
1117 3049 1.268352 GTGTGTGTGTGTGTGTGGTTT 59.732 47.619 0.00 0.00 0.00 3.27
1118 3050 1.957177 TGTGTGTGTGTGTGTGGTTTT 59.043 42.857 0.00 0.00 0.00 2.43
1119 3051 2.362397 TGTGTGTGTGTGTGTGGTTTTT 59.638 40.909 0.00 0.00 0.00 1.94
1120 3052 3.568430 TGTGTGTGTGTGTGTGGTTTTTA 59.432 39.130 0.00 0.00 0.00 1.52
1121 3053 4.037565 TGTGTGTGTGTGTGTGGTTTTTAA 59.962 37.500 0.00 0.00 0.00 1.52
1122 3054 4.619336 GTGTGTGTGTGTGTGGTTTTTAAG 59.381 41.667 0.00 0.00 0.00 1.85
1123 3055 3.610677 GTGTGTGTGTGTGGTTTTTAAGC 59.389 43.478 0.00 0.00 0.00 3.09
1124 3056 3.255888 TGTGTGTGTGTGGTTTTTAAGCA 59.744 39.130 0.00 0.00 36.38 3.91
1125 3057 4.238514 GTGTGTGTGTGGTTTTTAAGCAA 58.761 39.130 0.00 0.00 41.06 3.91
1126 3058 4.867608 GTGTGTGTGTGGTTTTTAAGCAAT 59.132 37.500 0.00 0.00 41.06 3.56
1127 3059 5.350091 GTGTGTGTGTGGTTTTTAAGCAATT 59.650 36.000 0.00 0.00 41.06 2.32
1128 3060 5.578727 TGTGTGTGTGGTTTTTAAGCAATTC 59.421 36.000 0.00 0.00 41.06 2.17
1168 3100 4.252073 GTTGCATGTTATTGGGCATTTGA 58.748 39.130 0.00 0.00 35.98 2.69
1208 3143 1.960689 TCAACGACACAGATCTCCACA 59.039 47.619 0.00 0.00 0.00 4.17
1288 3223 3.472283 TTGCAAACTCCAAGGTACGTA 57.528 42.857 0.00 0.00 0.00 3.57
1291 3226 2.331194 CAAACTCCAAGGTACGTACGG 58.669 52.381 21.06 14.59 0.00 4.02
1292 3227 1.620822 AACTCCAAGGTACGTACGGT 58.379 50.000 21.06 6.51 0.00 4.83
1293 3228 0.883833 ACTCCAAGGTACGTACGGTG 59.116 55.000 21.06 17.50 0.00 4.94
1294 3229 1.167851 CTCCAAGGTACGTACGGTGA 58.832 55.000 21.06 14.12 0.00 4.02
1295 3230 1.541147 CTCCAAGGTACGTACGGTGAA 59.459 52.381 21.06 7.27 0.00 3.18
1296 3231 1.959985 TCCAAGGTACGTACGGTGAAA 59.040 47.619 21.06 11.31 0.00 2.69
1299 3269 3.368843 CCAAGGTACGTACGGTGAAATTC 59.631 47.826 21.06 6.74 0.00 2.17
1301 3271 4.525912 AGGTACGTACGGTGAAATTCTT 57.474 40.909 21.06 0.00 0.00 2.52
1314 3284 6.818644 CGGTGAAATTCTTTATCTCCTCAAGA 59.181 38.462 0.00 0.00 38.72 3.02
1315 3285 7.334421 CGGTGAAATTCTTTATCTCCTCAAGAA 59.666 37.037 0.00 0.00 40.07 2.52
1316 3286 9.183368 GGTGAAATTCTTTATCTCCTCAAGAAT 57.817 33.333 1.36 1.36 45.21 2.40
1335 3305 8.455903 CAAGAATTGGACATTACATACCATCT 57.544 34.615 0.00 0.00 43.94 2.90
1336 3306 8.347771 CAAGAATTGGACATTACATACCATCTG 58.652 37.037 0.00 0.00 43.94 2.90
1337 3307 7.805163 AGAATTGGACATTACATACCATCTGA 58.195 34.615 0.00 0.00 32.31 3.27
1338 3308 8.443176 AGAATTGGACATTACATACCATCTGAT 58.557 33.333 0.00 0.00 32.31 2.90
1339 3309 8.627208 AATTGGACATTACATACCATCTGATC 57.373 34.615 0.00 0.00 32.31 2.92
1340 3310 6.745794 TGGACATTACATACCATCTGATCA 57.254 37.500 0.00 0.00 0.00 2.92
1341 3311 6.524734 TGGACATTACATACCATCTGATCAC 58.475 40.000 0.00 0.00 0.00 3.06
1342 3312 6.099557 TGGACATTACATACCATCTGATCACA 59.900 38.462 0.00 0.00 0.00 3.58
1357 3327 5.120674 TCTGATCACAAGCAGACGTAATTTG 59.879 40.000 0.00 0.00 42.79 2.32
1591 3581 2.804931 GCCGGCAATGAACAACGC 60.805 61.111 24.80 0.00 0.00 4.84
1685 3675 2.711922 CGTAGCCGAGAAGCCACCT 61.712 63.158 0.00 0.00 35.63 4.00
1693 3683 3.119096 GAAGCCACCTTCGCCGAC 61.119 66.667 0.00 0.00 38.24 4.79
1762 3752 0.395862 ATCGAGGAGAAGAAGCCGGA 60.396 55.000 5.05 0.00 0.00 5.14
1785 3775 0.249398 GAACCCTGCCGAGCTAAAGA 59.751 55.000 0.00 0.00 0.00 2.52
2139 4138 1.398390 GCACCGTCATGTGATTCTTCC 59.602 52.381 0.00 0.00 38.55 3.46
2145 4152 3.127376 CGTCATGTGATTCTTCCATTGCA 59.873 43.478 0.00 0.00 0.00 4.08
2204 4221 7.706179 TGAGAAATGGTTGCTTAGAAAGTTTTG 59.294 33.333 0.00 0.00 0.00 2.44
2206 4223 7.492344 AGAAATGGTTGCTTAGAAAGTTTTGTG 59.508 33.333 0.00 0.00 0.00 3.33
2209 4226 7.159322 TGGTTGCTTAGAAAGTTTTGTGTTA 57.841 32.000 0.00 0.00 0.00 2.41
2210 4227 7.030768 TGGTTGCTTAGAAAGTTTTGTGTTAC 58.969 34.615 0.00 0.00 0.00 2.50
2215 4232 9.169592 TGCTTAGAAAGTTTTGTGTTACTACTT 57.830 29.630 0.00 0.00 0.00 2.24
2239 4265 7.377766 TCACTCCAATAACTAACATGAAAGC 57.622 36.000 0.00 0.00 0.00 3.51
2243 4269 2.798834 TAACTAACATGAAAGCGCGC 57.201 45.000 26.66 26.66 0.00 6.86
2244 4270 0.179225 AACTAACATGAAAGCGCGCG 60.179 50.000 28.44 28.44 0.00 6.86
2507 4533 7.290813 AGAACAAGGGAAATGTTAAGTCTCTT 58.709 34.615 0.00 0.00 40.90 2.85
2553 4579 4.502171 CATGAAATGCACACTAACACCA 57.498 40.909 0.00 0.00 37.62 4.17
2557 4583 4.582240 TGAAATGCACACTAACACCAATCA 59.418 37.500 0.00 0.00 0.00 2.57
2572 4598 3.932710 ACCAATCATGTAAGTGCACTACG 59.067 43.478 22.01 7.16 0.00 3.51
2578 4604 3.439895 TGTAAGTGCACTACGTGTTGA 57.560 42.857 22.01 0.00 35.75 3.18
2657 4689 1.300481 GCAAGATTAGGAGGCGGAAC 58.700 55.000 0.00 0.00 0.00 3.62
2710 4742 0.517316 GTGTTGGTGATCAAGCCGTC 59.483 55.000 0.00 0.00 35.80 4.79
2728 4760 5.182760 AGCCGTCGGAACTTAATATAGTAGG 59.817 44.000 17.49 0.00 0.00 3.18
2829 4861 6.987386 TCACCAACAATACCAAAACTTATGG 58.013 36.000 0.00 0.00 43.84 2.74
2901 4942 3.365364 GCTCGGCCTTTGCATTATATGTC 60.365 47.826 0.00 0.00 40.13 3.06
2954 4995 5.356751 GGTATCCTTGCACATTGTGATGTTA 59.643 40.000 20.77 2.83 43.92 2.41
2993 5035 6.370166 CCTTCTAGTGAAAGGAAGATGTGTTC 59.630 42.308 3.11 0.00 38.82 3.18
2994 5036 6.672266 TCTAGTGAAAGGAAGATGTGTTCT 57.328 37.500 0.00 0.00 35.70 3.01
2995 5037 7.776618 TCTAGTGAAAGGAAGATGTGTTCTA 57.223 36.000 0.00 0.00 33.05 2.10
2996 5038 8.367660 TCTAGTGAAAGGAAGATGTGTTCTAT 57.632 34.615 0.00 0.00 33.05 1.98
2997 5039 9.475620 TCTAGTGAAAGGAAGATGTGTTCTATA 57.524 33.333 0.00 0.00 33.05 1.31
3000 5042 9.965902 AGTGAAAGGAAGATGTGTTCTATAATT 57.034 29.630 0.00 0.00 33.05 1.40
3006 5048 9.799106 AGGAAGATGTGTTCTATAATTAATGGG 57.201 33.333 0.00 0.00 33.05 4.00
3007 5049 9.574516 GGAAGATGTGTTCTATAATTAATGGGT 57.425 33.333 0.00 0.00 33.05 4.51
3021 5063 6.673839 ATTAATGGGTAGAGAAGTAGAGGC 57.326 41.667 0.00 0.00 0.00 4.70
3022 5064 3.689872 ATGGGTAGAGAAGTAGAGGCA 57.310 47.619 0.00 0.00 0.00 4.75
3023 5065 3.689872 TGGGTAGAGAAGTAGAGGCAT 57.310 47.619 0.00 0.00 0.00 4.40
3024 5066 3.995636 TGGGTAGAGAAGTAGAGGCATT 58.004 45.455 0.00 0.00 0.00 3.56
3025 5067 5.138758 TGGGTAGAGAAGTAGAGGCATTA 57.861 43.478 0.00 0.00 0.00 1.90
3026 5068 5.141182 TGGGTAGAGAAGTAGAGGCATTAG 58.859 45.833 0.00 0.00 0.00 1.73
3027 5069 4.525100 GGGTAGAGAAGTAGAGGCATTAGG 59.475 50.000 0.00 0.00 0.00 2.69
3028 5070 4.021807 GGTAGAGAAGTAGAGGCATTAGGC 60.022 50.000 0.00 0.00 43.74 3.93
3039 5081 0.451783 GCATTAGGCCAACTCCAACG 59.548 55.000 5.01 0.00 36.11 4.10
3040 5082 0.451783 CATTAGGCCAACTCCAACGC 59.548 55.000 5.01 0.00 0.00 4.84
3041 5083 0.037590 ATTAGGCCAACTCCAACGCA 59.962 50.000 5.01 0.00 0.00 5.24
3042 5084 0.887387 TTAGGCCAACTCCAACGCAC 60.887 55.000 5.01 0.00 0.00 5.34
3043 5085 4.025401 GGCCAACTCCAACGCACG 62.025 66.667 0.00 0.00 0.00 5.34
3044 5086 2.970324 GCCAACTCCAACGCACGA 60.970 61.111 0.00 0.00 0.00 4.35
3045 5087 2.935955 CCAACTCCAACGCACGAC 59.064 61.111 0.00 0.00 0.00 4.34
3046 5088 2.604174 CCAACTCCAACGCACGACC 61.604 63.158 0.00 0.00 0.00 4.79
3047 5089 2.280592 AACTCCAACGCACGACCC 60.281 61.111 0.00 0.00 0.00 4.46
3048 5090 3.819877 AACTCCAACGCACGACCCC 62.820 63.158 0.00 0.00 0.00 4.95
3049 5091 4.308458 CTCCAACGCACGACCCCA 62.308 66.667 0.00 0.00 0.00 4.96
3050 5092 3.818121 CTCCAACGCACGACCCCAA 62.818 63.158 0.00 0.00 0.00 4.12
3051 5093 2.902846 CCAACGCACGACCCCAAA 60.903 61.111 0.00 0.00 0.00 3.28
3052 5094 2.265182 CCAACGCACGACCCCAAAT 61.265 57.895 0.00 0.00 0.00 2.32
3053 5095 1.081509 CAACGCACGACCCCAAATG 60.082 57.895 0.00 0.00 0.00 2.32
3054 5096 2.265182 AACGCACGACCCCAAATGG 61.265 57.895 0.00 0.00 0.00 3.16
3055 5097 2.359354 CGCACGACCCCAAATGGA 60.359 61.111 0.00 0.00 37.39 3.41
3056 5098 2.686816 CGCACGACCCCAAATGGAC 61.687 63.158 0.00 0.00 37.39 4.02
3057 5099 2.686816 GCACGACCCCAAATGGACG 61.687 63.158 0.00 6.57 46.60 4.79
3059 5101 3.884900 CGACCCCAAATGGACGTC 58.115 61.111 7.13 7.13 38.48 4.34
3060 5102 2.098233 CGACCCCAAATGGACGTCG 61.098 63.158 20.14 20.14 44.78 5.12
3061 5103 1.743995 GACCCCAAATGGACGTCGG 60.744 63.158 9.92 5.65 37.39 4.79
3062 5104 2.349755 CCCCAAATGGACGTCGGT 59.650 61.111 9.92 0.00 37.39 4.69
3063 5105 1.302993 CCCCAAATGGACGTCGGTT 60.303 57.895 9.92 3.78 37.39 4.44
3064 5106 0.891904 CCCCAAATGGACGTCGGTTT 60.892 55.000 9.92 9.98 37.39 3.27
3065 5107 0.955905 CCCAAATGGACGTCGGTTTT 59.044 50.000 9.92 6.34 37.39 2.43
3066 5108 1.335506 CCCAAATGGACGTCGGTTTTG 60.336 52.381 20.61 20.61 37.39 2.44
3067 5109 1.335496 CCAAATGGACGTCGGTTTTGT 59.665 47.619 23.29 3.37 37.39 2.83
3068 5110 2.603652 CCAAATGGACGTCGGTTTTGTC 60.604 50.000 23.29 6.52 37.39 3.18
3093 5135 2.146920 TTTTTCTGTTTGGGTCGGGT 57.853 45.000 0.00 0.00 0.00 5.28
3094 5136 3.294038 TTTTTCTGTTTGGGTCGGGTA 57.706 42.857 0.00 0.00 0.00 3.69
3095 5137 3.294038 TTTTCTGTTTGGGTCGGGTAA 57.706 42.857 0.00 0.00 0.00 2.85
3096 5138 3.294038 TTTCTGTTTGGGTCGGGTAAA 57.706 42.857 0.00 0.00 0.00 2.01
3097 5139 2.554370 TCTGTTTGGGTCGGGTAAAG 57.446 50.000 0.00 0.00 0.00 1.85
3098 5140 1.072648 TCTGTTTGGGTCGGGTAAAGG 59.927 52.381 0.00 0.00 0.00 3.11
3099 5141 0.110869 TGTTTGGGTCGGGTAAAGGG 59.889 55.000 0.00 0.00 0.00 3.95
3100 5142 0.609957 GTTTGGGTCGGGTAAAGGGG 60.610 60.000 0.00 0.00 0.00 4.79
3101 5143 2.429235 TTTGGGTCGGGTAAAGGGGC 62.429 60.000 0.00 0.00 0.00 5.80
3102 5144 4.478371 GGGTCGGGTAAAGGGGCG 62.478 72.222 0.00 0.00 0.00 6.13
3109 5151 4.397832 GTAAAGGGGCGCCGTCCA 62.398 66.667 22.54 0.61 0.00 4.02
3110 5152 4.090588 TAAAGGGGCGCCGTCCAG 62.091 66.667 22.54 0.00 0.00 3.86
3118 5160 4.084888 CGCCGTCCAGCCGTTTTC 62.085 66.667 0.00 0.00 0.00 2.29
3119 5161 3.733960 GCCGTCCAGCCGTTTTCC 61.734 66.667 0.00 0.00 0.00 3.13
3120 5162 2.032071 CCGTCCAGCCGTTTTCCT 59.968 61.111 0.00 0.00 0.00 3.36
3121 5163 2.325082 CCGTCCAGCCGTTTTCCTG 61.325 63.158 0.00 0.00 0.00 3.86
3126 5168 1.508088 CAGCCGTTTTCCTGGATGC 59.492 57.895 0.00 0.00 34.51 3.91
3127 5169 1.074775 AGCCGTTTTCCTGGATGCA 59.925 52.632 0.00 0.00 0.00 3.96
3128 5170 0.323725 AGCCGTTTTCCTGGATGCAT 60.324 50.000 0.00 0.00 0.00 3.96
3129 5171 0.532115 GCCGTTTTCCTGGATGCATT 59.468 50.000 0.00 0.00 0.00 3.56
3130 5172 1.736696 GCCGTTTTCCTGGATGCATTG 60.737 52.381 0.00 0.00 0.00 2.82
3131 5173 1.135024 CCGTTTTCCTGGATGCATTGG 60.135 52.381 0.00 4.27 0.00 3.16
3132 5174 1.736696 CGTTTTCCTGGATGCATTGGC 60.737 52.381 0.00 0.00 41.68 4.52
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
50 51 6.481976 TCGTTGAGTGTGTGAGAATTATGTTT 59.518 34.615 0.00 0.00 0.00 2.83
146 147 1.672030 CAATGGCACTGTCCTGCGA 60.672 57.895 0.00 0.00 38.12 5.10
163 164 3.011566 TCCTTTTGCAGGTTTGTCTCA 57.988 42.857 0.00 0.00 44.37 3.27
175 176 7.425606 TCTCTAGAATGTGTTTTTCCTTTTGC 58.574 34.615 0.00 0.00 0.00 3.68
311 316 7.093509 GGTGATGGGGTGATGTTTTAGTTTAAT 60.094 37.037 0.00 0.00 0.00 1.40
367 372 2.178521 CTGGTTCGTCGACGGGAG 59.821 66.667 35.05 21.32 40.29 4.30
393 398 0.692419 GATCAAGGCTCCCCTCTCCA 60.692 60.000 0.00 0.00 41.90 3.86
720 2599 8.628630 AGCAAATAAGCTCCTTCCTATATTTC 57.371 34.615 0.00 0.00 42.18 2.17
724 2603 8.492415 TCTTAGCAAATAAGCTCCTTCCTATA 57.508 34.615 0.00 0.00 45.26 1.31
727 2606 5.700402 TCTTAGCAAATAAGCTCCTTCCT 57.300 39.130 0.00 0.00 45.26 3.36
797 2679 6.458232 TGACTTATTTCCTAGTCAGAGCTC 57.542 41.667 5.27 5.27 44.20 4.09
851 2744 5.104402 TCCTCAATGAACTGATTAGGCATGA 60.104 40.000 0.00 0.00 0.00 3.07
894 2787 2.172717 AGGCGTATAAATTGCAGGGACT 59.827 45.455 0.00 0.00 43.88 3.85
930 2823 1.132365 AGAGGGGGAGAGTGAAGGTTT 60.132 52.381 0.00 0.00 0.00 3.27
946 2847 2.505407 TGGAGAGAGAGAGTGAGAGAGG 59.495 54.545 0.00 0.00 0.00 3.69
1022 2923 5.760253 ACACACAATTGTAGAGTGAGAAAGG 59.240 40.000 25.78 7.99 37.05 3.11
1035 2936 3.437642 CCCCCTCACACACAATTGT 57.562 52.632 4.92 4.92 35.84 2.71
1050 2951 3.492337 TCTTACAAATGACAACACCCCC 58.508 45.455 0.00 0.00 0.00 5.40
1052 2953 6.430000 ACACTATCTTACAAATGACAACACCC 59.570 38.462 0.00 0.00 0.00 4.61
1091 3023 3.126000 CACACACACACACACACACAATA 59.874 43.478 0.00 0.00 0.00 1.90
1093 3025 1.265365 CACACACACACACACACACAA 59.735 47.619 0.00 0.00 0.00 3.33
1095 3027 0.167908 CCACACACACACACACACAC 59.832 55.000 0.00 0.00 0.00 3.82
1096 3028 0.250510 ACCACACACACACACACACA 60.251 50.000 0.00 0.00 0.00 3.72
1097 3029 0.878416 AACCACACACACACACACAC 59.122 50.000 0.00 0.00 0.00 3.82
1098 3030 1.610363 AAACCACACACACACACACA 58.390 45.000 0.00 0.00 0.00 3.72
1099 3031 2.715737 AAAACCACACACACACACAC 57.284 45.000 0.00 0.00 0.00 3.82
1100 3032 4.799678 CTTAAAAACCACACACACACACA 58.200 39.130 0.00 0.00 0.00 3.72
1101 3033 3.610677 GCTTAAAAACCACACACACACAC 59.389 43.478 0.00 0.00 0.00 3.82
1102 3034 3.255888 TGCTTAAAAACCACACACACACA 59.744 39.130 0.00 0.00 0.00 3.72
1103 3035 3.839293 TGCTTAAAAACCACACACACAC 58.161 40.909 0.00 0.00 0.00 3.82
1104 3036 4.521130 TTGCTTAAAAACCACACACACA 57.479 36.364 0.00 0.00 0.00 3.72
1105 3037 5.810074 AGAATTGCTTAAAAACCACACACAC 59.190 36.000 0.00 0.00 0.00 3.82
1106 3038 5.971763 AGAATTGCTTAAAAACCACACACA 58.028 33.333 0.00 0.00 0.00 3.72
1107 3039 6.975772 TGTAGAATTGCTTAAAAACCACACAC 59.024 34.615 0.00 0.00 0.00 3.82
1108 3040 7.101652 TGTAGAATTGCTTAAAAACCACACA 57.898 32.000 0.00 0.00 0.00 3.72
1109 3041 7.995463 TTGTAGAATTGCTTAAAAACCACAC 57.005 32.000 0.00 0.00 0.00 3.82
1110 3042 9.039870 CAATTGTAGAATTGCTTAAAAACCACA 57.960 29.630 11.92 0.00 41.50 4.17
1124 3056 7.201513 GCAACACAAACACACAATTGTAGAATT 60.202 33.333 11.53 2.10 37.66 2.17
1125 3057 6.255453 GCAACACAAACACACAATTGTAGAAT 59.745 34.615 11.53 0.00 37.66 2.40
1126 3058 5.574830 GCAACACAAACACACAATTGTAGAA 59.425 36.000 11.53 0.00 37.66 2.10
1127 3059 5.098893 GCAACACAAACACACAATTGTAGA 58.901 37.500 11.53 0.00 37.66 2.59
1128 3060 4.861462 TGCAACACAAACACACAATTGTAG 59.139 37.500 11.53 9.59 37.66 2.74
1168 3100 7.389330 TCGTTGACACCACAAACATATAAATCT 59.611 33.333 0.00 0.00 0.00 2.40
1208 3143 5.339530 CCCAAGATCAACCTTGAGGATTAGT 60.340 44.000 3.59 0.00 44.66 2.24
1288 3223 6.049955 TGAGGAGATAAAGAATTTCACCGT 57.950 37.500 0.00 0.00 40.09 4.83
1299 3269 8.517062 AATGTCCAATTCTTGAGGAGATAAAG 57.483 34.615 0.00 0.00 34.67 1.85
1301 3271 8.548025 TGTAATGTCCAATTCTTGAGGAGATAA 58.452 33.333 0.00 0.00 34.67 1.75
1314 3284 8.219868 TGATCAGATGGTATGTAATGTCCAATT 58.780 33.333 0.00 0.00 35.84 2.32
1315 3285 7.663081 GTGATCAGATGGTATGTAATGTCCAAT 59.337 37.037 0.00 0.00 35.84 3.16
1316 3286 6.992123 GTGATCAGATGGTATGTAATGTCCAA 59.008 38.462 0.00 0.00 35.84 3.53
1317 3287 6.099557 TGTGATCAGATGGTATGTAATGTCCA 59.900 38.462 0.00 0.00 36.44 4.02
1318 3288 6.524734 TGTGATCAGATGGTATGTAATGTCC 58.475 40.000 0.00 0.00 0.00 4.02
1319 3289 7.307632 GCTTGTGATCAGATGGTATGTAATGTC 60.308 40.741 0.00 0.00 0.00 3.06
1320 3290 6.484643 GCTTGTGATCAGATGGTATGTAATGT 59.515 38.462 0.00 0.00 0.00 2.71
1321 3291 6.484308 TGCTTGTGATCAGATGGTATGTAATG 59.516 38.462 0.00 0.00 0.00 1.90
1322 3292 6.594744 TGCTTGTGATCAGATGGTATGTAAT 58.405 36.000 0.00 0.00 0.00 1.89
1323 3293 5.988287 TGCTTGTGATCAGATGGTATGTAA 58.012 37.500 0.00 0.00 0.00 2.41
1324 3294 5.363580 TCTGCTTGTGATCAGATGGTATGTA 59.636 40.000 0.00 0.00 34.69 2.29
1325 3295 4.162888 TCTGCTTGTGATCAGATGGTATGT 59.837 41.667 0.00 0.00 34.69 2.29
1326 3296 4.510711 GTCTGCTTGTGATCAGATGGTATG 59.489 45.833 0.00 0.00 40.89 2.39
1327 3297 4.701765 GTCTGCTTGTGATCAGATGGTAT 58.298 43.478 0.00 0.00 40.89 2.73
1328 3298 3.429410 CGTCTGCTTGTGATCAGATGGTA 60.429 47.826 0.00 0.00 40.89 3.25
1329 3299 2.676176 CGTCTGCTTGTGATCAGATGGT 60.676 50.000 0.00 0.00 40.89 3.55
1330 3300 1.931841 CGTCTGCTTGTGATCAGATGG 59.068 52.381 0.00 0.00 40.89 3.51
1331 3301 2.614779 ACGTCTGCTTGTGATCAGATG 58.385 47.619 0.00 9.22 46.44 2.90
1332 3302 4.456280 TTACGTCTGCTTGTGATCAGAT 57.544 40.909 0.00 0.00 40.89 2.90
1333 3303 3.934457 TTACGTCTGCTTGTGATCAGA 57.066 42.857 0.00 0.00 37.03 3.27
1334 3304 5.319139 CAAATTACGTCTGCTTGTGATCAG 58.681 41.667 0.00 0.00 0.00 2.90
1335 3305 4.378356 GCAAATTACGTCTGCTTGTGATCA 60.378 41.667 0.00 0.00 33.20 2.92
1336 3306 4.091424 GCAAATTACGTCTGCTTGTGATC 58.909 43.478 0.00 0.00 33.20 2.92
1337 3307 3.501828 TGCAAATTACGTCTGCTTGTGAT 59.498 39.130 11.56 0.00 37.00 3.06
1338 3308 2.875317 TGCAAATTACGTCTGCTTGTGA 59.125 40.909 11.56 0.00 37.00 3.58
1339 3309 3.266541 TGCAAATTACGTCTGCTTGTG 57.733 42.857 11.56 0.00 37.00 3.33
1340 3310 3.980646 TTGCAAATTACGTCTGCTTGT 57.019 38.095 0.00 0.00 37.00 3.16
1341 3311 5.827568 AAATTGCAAATTACGTCTGCTTG 57.172 34.783 1.71 4.84 37.00 4.01
1342 3312 5.982516 TCAAAATTGCAAATTACGTCTGCTT 59.017 32.000 1.71 0.00 37.00 3.91
1357 3327 4.508861 CGGATCCATTTCCATCAAAATTGC 59.491 41.667 13.41 0.00 35.34 3.56
1396 3366 5.476945 TCCTCATCTGCACGTACATACATAT 59.523 40.000 0.00 0.00 0.00 1.78
1591 3581 5.412904 GTCTTCCCCTTGTGATTGTTCTTAG 59.587 44.000 0.00 0.00 0.00 2.18
1670 3660 2.665603 GAAGGTGGCTTCTCGGCT 59.334 61.111 0.00 0.00 39.32 5.52
1785 3775 3.860930 AAGAACCCAACGGCGGCAT 62.861 57.895 13.24 0.00 0.00 4.40
1913 3903 2.821366 CAGCCGCAGTGTCCCATC 60.821 66.667 0.00 0.00 0.00 3.51
2139 4138 4.397103 TCTGAGCAAAGAATAGGTGCAATG 59.603 41.667 0.00 0.00 40.83 2.82
2204 4221 9.918630 TTAGTTATTGGAGTGAAGTAGTAACAC 57.081 33.333 0.00 0.00 35.15 3.32
2206 4223 9.918630 TGTTAGTTATTGGAGTGAAGTAGTAAC 57.081 33.333 0.00 0.00 0.00 2.50
2209 4226 8.812972 TCATGTTAGTTATTGGAGTGAAGTAGT 58.187 33.333 0.00 0.00 0.00 2.73
2210 4227 9.653287 TTCATGTTAGTTATTGGAGTGAAGTAG 57.347 33.333 0.00 0.00 0.00 2.57
2215 4232 6.092122 CGCTTTCATGTTAGTTATTGGAGTGA 59.908 38.462 0.00 0.00 0.00 3.41
2217 4234 5.163754 GCGCTTTCATGTTAGTTATTGGAGT 60.164 40.000 0.00 0.00 0.00 3.85
2218 4235 5.266242 GCGCTTTCATGTTAGTTATTGGAG 58.734 41.667 0.00 0.00 0.00 3.86
2542 4568 6.801539 CACTTACATGATTGGTGTTAGTGT 57.198 37.500 13.97 0.00 45.20 3.55
2545 4571 5.412594 AGTGCACTTACATGATTGGTGTTAG 59.587 40.000 15.25 0.00 33.68 2.34
2572 4598 9.736023 AATATCTCTCAAACAAAAGTTCAACAC 57.264 29.630 0.00 0.00 0.00 3.32
2578 4604 7.147976 GGTGCAATATCTCTCAAACAAAAGTT 58.852 34.615 0.00 0.00 0.00 2.66
2639 4671 2.555199 CAGTTCCGCCTCCTAATCTTG 58.445 52.381 0.00 0.00 0.00 3.02
2710 4742 8.790718 TCAGTTAGCCTACTATATTAAGTTCCG 58.209 37.037 0.00 0.00 0.00 4.30
2728 4760 9.222916 GAAGAAACAACTTTACTTTCAGTTAGC 57.777 33.333 0.00 0.00 31.78 3.09
2775 4807 6.221858 TGTTTCAAAAAGTGTCAGTTTTGC 57.778 33.333 17.17 7.89 42.07 3.68
2777 4809 8.921670 GTGTATGTTTCAAAAAGTGTCAGTTTT 58.078 29.630 11.84 11.84 32.49 2.43
2781 4813 7.914871 TGATGTGTATGTTTCAAAAAGTGTCAG 59.085 33.333 0.00 0.00 0.00 3.51
2829 4861 5.178067 GCCCAATATTAGCATTGCATGTTTC 59.822 40.000 11.91 0.00 35.06 2.78
2870 4909 1.880027 CAAAGGCCGAGCTGTTTAAGT 59.120 47.619 0.00 0.00 0.00 2.24
2879 4918 2.554032 ACATATAATGCAAAGGCCGAGC 59.446 45.455 9.75 9.75 40.13 5.03
2881 4920 3.146066 GGACATATAATGCAAAGGCCGA 58.854 45.455 0.00 0.00 40.13 5.54
2901 4942 0.531532 CTTGCTCAGCCGGTAGATGG 60.532 60.000 1.90 0.00 0.00 3.51
2954 4995 6.385443 TCACTAGAAGGATTGGGATGAGTAT 58.615 40.000 0.00 0.00 0.00 2.12
2995 5037 8.817876 GCCTCTACTTCTCTACCCATTAATTAT 58.182 37.037 0.00 0.00 0.00 1.28
2996 5038 7.787904 TGCCTCTACTTCTCTACCCATTAATTA 59.212 37.037 0.00 0.00 0.00 1.40
2997 5039 6.615726 TGCCTCTACTTCTCTACCCATTAATT 59.384 38.462 0.00 0.00 0.00 1.40
2998 5040 6.143915 TGCCTCTACTTCTCTACCCATTAAT 58.856 40.000 0.00 0.00 0.00 1.40
2999 5041 5.525484 TGCCTCTACTTCTCTACCCATTAA 58.475 41.667 0.00 0.00 0.00 1.40
3000 5042 5.138758 TGCCTCTACTTCTCTACCCATTA 57.861 43.478 0.00 0.00 0.00 1.90
3001 5043 3.995636 TGCCTCTACTTCTCTACCCATT 58.004 45.455 0.00 0.00 0.00 3.16
3002 5044 3.689872 TGCCTCTACTTCTCTACCCAT 57.310 47.619 0.00 0.00 0.00 4.00
3003 5045 3.689872 ATGCCTCTACTTCTCTACCCA 57.310 47.619 0.00 0.00 0.00 4.51
3004 5046 4.525100 CCTAATGCCTCTACTTCTCTACCC 59.475 50.000 0.00 0.00 0.00 3.69
3005 5047 4.021807 GCCTAATGCCTCTACTTCTCTACC 60.022 50.000 0.00 0.00 0.00 3.18
3006 5048 5.128992 GCCTAATGCCTCTACTTCTCTAC 57.871 47.826 0.00 0.00 0.00 2.59
3020 5062 0.451783 CGTTGGAGTTGGCCTAATGC 59.548 55.000 3.32 0.47 40.16 3.56
3021 5063 0.451783 GCGTTGGAGTTGGCCTAATG 59.548 55.000 3.32 0.00 0.00 1.90
3022 5064 0.037590 TGCGTTGGAGTTGGCCTAAT 59.962 50.000 3.32 0.00 0.00 1.73
3023 5065 0.887387 GTGCGTTGGAGTTGGCCTAA 60.887 55.000 3.32 0.00 0.00 2.69
3024 5066 1.302192 GTGCGTTGGAGTTGGCCTA 60.302 57.895 3.32 0.00 0.00 3.93
3025 5067 2.594592 GTGCGTTGGAGTTGGCCT 60.595 61.111 3.32 0.00 0.00 5.19
3026 5068 4.025401 CGTGCGTTGGAGTTGGCC 62.025 66.667 0.00 0.00 0.00 5.36
3027 5069 2.970324 TCGTGCGTTGGAGTTGGC 60.970 61.111 0.00 0.00 0.00 4.52
3028 5070 2.604174 GGTCGTGCGTTGGAGTTGG 61.604 63.158 0.00 0.00 0.00 3.77
3029 5071 2.604174 GGGTCGTGCGTTGGAGTTG 61.604 63.158 0.00 0.00 0.00 3.16
3030 5072 2.280592 GGGTCGTGCGTTGGAGTT 60.281 61.111 0.00 0.00 0.00 3.01
3031 5073 4.309950 GGGGTCGTGCGTTGGAGT 62.310 66.667 0.00 0.00 0.00 3.85
3032 5074 3.818121 TTGGGGTCGTGCGTTGGAG 62.818 63.158 0.00 0.00 0.00 3.86
3033 5075 2.684192 ATTTGGGGTCGTGCGTTGGA 62.684 55.000 0.00 0.00 0.00 3.53
3034 5076 2.265182 ATTTGGGGTCGTGCGTTGG 61.265 57.895 0.00 0.00 0.00 3.77
3035 5077 1.081509 CATTTGGGGTCGTGCGTTG 60.082 57.895 0.00 0.00 0.00 4.10
3036 5078 2.265182 CCATTTGGGGTCGTGCGTT 61.265 57.895 0.00 0.00 0.00 4.84
3037 5079 2.671619 CCATTTGGGGTCGTGCGT 60.672 61.111 0.00 0.00 0.00 5.24
3038 5080 2.359354 TCCATTTGGGGTCGTGCG 60.359 61.111 0.00 0.00 37.22 5.34
3039 5081 2.686816 CGTCCATTTGGGGTCGTGC 61.687 63.158 0.00 0.00 37.22 5.34
3040 5082 1.296056 GACGTCCATTTGGGGTCGTG 61.296 60.000 3.51 0.00 43.50 4.35
3041 5083 1.004200 GACGTCCATTTGGGGTCGT 60.004 57.895 3.51 4.30 45.07 4.34
3042 5084 2.098233 CGACGTCCATTTGGGGTCG 61.098 63.158 21.07 21.07 46.89 4.79
3043 5085 1.743995 CCGACGTCCATTTGGGGTC 60.744 63.158 10.58 10.05 37.22 4.46
3044 5086 2.059345 AACCGACGTCCATTTGGGGT 62.059 55.000 10.58 6.60 37.22 4.95
3045 5087 0.891904 AAACCGACGTCCATTTGGGG 60.892 55.000 10.58 5.90 37.22 4.96
3046 5088 0.955905 AAAACCGACGTCCATTTGGG 59.044 50.000 10.58 6.67 35.41 4.12
3047 5089 1.335496 ACAAAACCGACGTCCATTTGG 59.665 47.619 25.95 19.22 35.77 3.28
3048 5090 2.603652 GGACAAAACCGACGTCCATTTG 60.604 50.000 23.12 23.12 46.98 2.32
3049 5091 1.605232 GGACAAAACCGACGTCCATTT 59.395 47.619 10.58 7.89 46.98 2.32
3050 5092 1.232119 GGACAAAACCGACGTCCATT 58.768 50.000 10.58 1.13 46.98 3.16
3051 5093 2.922779 GGACAAAACCGACGTCCAT 58.077 52.632 10.58 0.00 46.98 3.41
3052 5094 4.442018 GGACAAAACCGACGTCCA 57.558 55.556 10.58 0.00 46.98 4.02
3074 5116 2.146920 ACCCGACCCAAACAGAAAAA 57.853 45.000 0.00 0.00 0.00 1.94
3075 5117 3.294038 TTACCCGACCCAAACAGAAAA 57.706 42.857 0.00 0.00 0.00 2.29
3076 5118 3.215975 CTTTACCCGACCCAAACAGAAA 58.784 45.455 0.00 0.00 0.00 2.52
3077 5119 2.487625 CCTTTACCCGACCCAAACAGAA 60.488 50.000 0.00 0.00 0.00 3.02
3078 5120 1.072648 CCTTTACCCGACCCAAACAGA 59.927 52.381 0.00 0.00 0.00 3.41
3079 5121 1.530323 CCTTTACCCGACCCAAACAG 58.470 55.000 0.00 0.00 0.00 3.16
3080 5122 0.110869 CCCTTTACCCGACCCAAACA 59.889 55.000 0.00 0.00 0.00 2.83
3081 5123 0.609957 CCCCTTTACCCGACCCAAAC 60.610 60.000 0.00 0.00 0.00 2.93
3082 5124 1.769006 CCCCTTTACCCGACCCAAA 59.231 57.895 0.00 0.00 0.00 3.28
3083 5125 2.909549 GCCCCTTTACCCGACCCAA 61.910 63.158 0.00 0.00 0.00 4.12
3084 5126 3.332385 GCCCCTTTACCCGACCCA 61.332 66.667 0.00 0.00 0.00 4.51
3085 5127 4.478371 CGCCCCTTTACCCGACCC 62.478 72.222 0.00 0.00 0.00 4.46
3092 5134 4.397832 TGGACGGCGCCCCTTTAC 62.398 66.667 23.46 3.81 0.00 2.01
3093 5135 4.090588 CTGGACGGCGCCCCTTTA 62.091 66.667 23.46 2.59 0.00 1.85
3102 5144 3.733960 GGAAAACGGCTGGACGGC 61.734 66.667 0.00 0.00 38.39 5.68
3103 5145 2.032071 AGGAAAACGGCTGGACGG 59.968 61.111 0.00 0.00 38.39 4.79
3104 5146 2.325082 CCAGGAAAACGGCTGGACG 61.325 63.158 0.00 0.00 39.19 4.79
3105 5147 1.072505 TCCAGGAAAACGGCTGGAC 59.927 57.895 0.00 0.00 40.63 4.02
3106 5148 3.569849 TCCAGGAAAACGGCTGGA 58.430 55.556 0.00 0.00 42.95 3.86
3107 5149 1.937546 GCATCCAGGAAAACGGCTGG 61.938 60.000 0.00 0.00 38.26 4.85
3108 5150 1.243342 TGCATCCAGGAAAACGGCTG 61.243 55.000 0.00 0.00 0.00 4.85
3109 5151 0.323725 ATGCATCCAGGAAAACGGCT 60.324 50.000 0.00 0.00 0.00 5.52
3110 5152 0.532115 AATGCATCCAGGAAAACGGC 59.468 50.000 0.00 0.00 0.00 5.68
3111 5153 1.135024 CCAATGCATCCAGGAAAACGG 60.135 52.381 0.00 0.00 0.00 4.44
3112 5154 1.736696 GCCAATGCATCCAGGAAAACG 60.737 52.381 14.86 0.00 37.47 3.60
3113 5155 2.014335 GCCAATGCATCCAGGAAAAC 57.986 50.000 14.86 0.00 37.47 2.43


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.