Multiple sequence alignment - TraesCS2B01G628900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G628900 chr2B 100.000 2861 0 0 1 2861 800171448 800168588 0.000000e+00 5284.0
1 TraesCS2B01G628900 chr2B 96.728 978 9 3 1 956 798972485 798973461 0.000000e+00 1607.0
2 TraesCS2B01G628900 chr2B 93.769 642 38 1 2222 2861 459375545 459374904 0.000000e+00 963.0
3 TraesCS2B01G628900 chr2B 93.624 643 36 4 2222 2861 257480373 257479733 0.000000e+00 955.0
4 TraesCS2B01G628900 chr2B 86.545 275 26 11 1902 2171 553551584 553551316 2.790000e-75 292.0
5 TraesCS2B01G628900 chr2B 73.735 415 64 25 280 687 232837585 232837209 1.390000e-23 121.0
6 TraesCS2B01G628900 chr2B 80.667 150 16 8 216 353 763189596 763189744 1.400000e-18 104.0
7 TraesCS2B01G628900 chr7A 89.357 949 91 6 947 1889 26977569 26976625 0.000000e+00 1184.0
8 TraesCS2B01G628900 chr7A 85.942 939 124 6 955 1889 26823150 26822216 0.000000e+00 996.0
9 TraesCS2B01G628900 chr7A 81.405 242 33 8 720 956 665676344 665676578 1.350000e-43 187.0
10 TraesCS2B01G628900 chr7A 82.946 129 19 3 720 847 595289751 595289625 2.330000e-21 113.0
11 TraesCS2B01G628900 chr7D 89.323 946 95 4 948 1889 26559399 26558456 0.000000e+00 1182.0
12 TraesCS2B01G628900 chr7D 86.272 947 122 4 947 1889 25897948 25897006 0.000000e+00 1022.0
13 TraesCS2B01G628900 chr7D 90.638 235 19 3 1912 2145 155292553 155292321 2.770000e-80 309.0
14 TraesCS2B01G628900 chr7D 87.156 109 8 4 849 956 177764915 177765018 5.010000e-23 119.0
15 TraesCS2B01G628900 chr7D 80.000 150 17 8 216 353 512952437 512952289 6.520000e-17 99.0
16 TraesCS2B01G628900 chr4A 89.124 947 92 5 947 1889 710676623 710675684 0.000000e+00 1168.0
17 TraesCS2B01G628900 chr4A 86.717 926 115 5 963 1885 710272158 710271238 0.000000e+00 1022.0
18 TraesCS2B01G628900 chr2D 88.453 892 97 5 949 1838 338331100 338330213 0.000000e+00 1072.0
19 TraesCS2B01G628900 chr2D 88.494 704 61 9 1 698 531341919 531342608 0.000000e+00 833.0
20 TraesCS2B01G628900 chr2D 87.926 704 64 10 1 698 595259664 595258976 0.000000e+00 809.0
21 TraesCS2B01G628900 chr2D 91.139 237 17 4 1910 2145 347496685 347496452 4.600000e-83 318.0
22 TraesCS2B01G628900 chr2D 87.209 258 14 12 699 956 531342649 531342887 2.810000e-70 276.0
23 TraesCS2B01G628900 chr2D 87.209 258 14 12 699 956 595258935 595258697 2.810000e-70 276.0
24 TraesCS2B01G628900 chr2D 85.135 74 7 4 1499 1570 108935459 108935530 3.950000e-09 73.1
25 TraesCS2B01G628900 chr2A 87.995 883 104 2 957 1838 448294196 448293315 0.000000e+00 1042.0
26 TraesCS2B01G628900 chr2A 89.929 705 57 11 1 698 652521067 652521764 0.000000e+00 896.0
27 TraesCS2B01G628900 chr2A 89.796 245 20 5 1902 2145 544306310 544306550 2.770000e-80 309.0
28 TraesCS2B01G628900 chr2A 86.765 272 30 6 1899 2167 581174329 581174597 5.990000e-77 298.0
29 TraesCS2B01G628900 chr2A 86.538 260 22 2 699 958 652521808 652522054 1.010000e-69 274.0
30 TraesCS2B01G628900 chr3B 87.882 883 105 2 957 1838 224956970 224956089 0.000000e+00 1037.0
31 TraesCS2B01G628900 chr3B 87.156 109 8 4 849 956 83498442 83498339 5.010000e-23 119.0
32 TraesCS2B01G628900 chr3A 93.624 643 38 2 2221 2861 275492759 275493400 0.000000e+00 957.0
33 TraesCS2B01G628900 chr3A 84.167 120 11 6 840 957 142905281 142905168 3.010000e-20 110.0
34 TraesCS2B01G628900 chr1D 93.614 642 39 1 2222 2861 310269963 310269322 0.000000e+00 957.0
35 TraesCS2B01G628900 chr1D 85.849 106 9 4 849 953 81069565 81069665 1.080000e-19 108.0
36 TraesCS2B01G628900 chr1D 84.259 108 11 4 850 956 398462327 398462225 1.810000e-17 100.0
37 TraesCS2B01G628900 chr1B 93.624 643 38 2 2222 2861 503370218 503369576 0.000000e+00 957.0
38 TraesCS2B01G628900 chr1B 93.594 640 40 1 2222 2861 528404780 528404142 0.000000e+00 953.0
39 TraesCS2B01G628900 chr1B 88.583 254 22 7 1911 2161 278024688 278024937 4.630000e-78 302.0
40 TraesCS2B01G628900 chr1B 84.211 114 11 4 849 961 144226349 144226456 1.400000e-18 104.0
41 TraesCS2B01G628900 chr5B 93.594 640 41 0 2222 2861 556909106 556908467 0.000000e+00 955.0
42 TraesCS2B01G628900 chr5B 87.156 109 8 4 849 956 524412759 524412656 5.010000e-23 119.0
43 TraesCS2B01G628900 chr7B 93.594 640 40 1 2222 2861 556779512 556778874 0.000000e+00 953.0
44 TraesCS2B01G628900 chr4B 93.594 640 40 1 2222 2861 487999662 487999024 0.000000e+00 953.0
45 TraesCS2B01G628900 chr4B 84.685 111 11 4 849 958 488064494 488064389 3.900000e-19 106.0
46 TraesCS2B01G628900 chr6A 88.760 258 25 1 699 956 7713911 7714164 2.140000e-81 313.0
47 TraesCS2B01G628900 chr6A 86.239 109 7 6 849 956 93165402 93165301 8.380000e-21 111.0
48 TraesCS2B01G628900 chr4D 88.760 258 23 5 1911 2167 370786127 370786379 7.700000e-81 311.0
49 TraesCS2B01G628900 chr4D 89.837 246 20 5 1902 2145 387811883 387812125 7.700000e-81 311.0
50 TraesCS2B01G628900 chr4D 87.156 109 8 3 849 956 474569373 474569270 5.010000e-23 119.0
51 TraesCS2B01G628900 chr6D 90.336 238 20 3 1909 2145 258410717 258410482 2.770000e-80 309.0
52 TraesCS2B01G628900 chr6D 86.916 107 7 5 851 956 284667234 284667134 2.330000e-21 113.0
53 TraesCS2B01G628900 chr6D 84.112 107 10 5 851 956 103043123 103043023 2.350000e-16 97.1
54 TraesCS2B01G628900 chr5D 84.553 123 15 4 722 843 407697184 407697303 5.010000e-23 119.0
55 TraesCS2B01G628900 chr5D 85.321 109 9 5 849 956 561692333 561692435 3.900000e-19 106.0
56 TraesCS2B01G628900 chr5D 96.667 60 2 0 898 957 510489461 510489402 1.810000e-17 100.0
57 TraesCS2B01G628900 chr1A 85.185 108 9 5 851 957 290421800 290421699 1.400000e-18 104.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G628900 chr2B 800168588 800171448 2860 True 5284.0 5284 100.0000 1 2861 1 chr2B.!!$R5 2860
1 TraesCS2B01G628900 chr2B 798972485 798973461 976 False 1607.0 1607 96.7280 1 956 1 chr2B.!!$F2 955
2 TraesCS2B01G628900 chr2B 459374904 459375545 641 True 963.0 963 93.7690 2222 2861 1 chr2B.!!$R3 639
3 TraesCS2B01G628900 chr2B 257479733 257480373 640 True 955.0 955 93.6240 2222 2861 1 chr2B.!!$R2 639
4 TraesCS2B01G628900 chr7A 26976625 26977569 944 True 1184.0 1184 89.3570 947 1889 1 chr7A.!!$R2 942
5 TraesCS2B01G628900 chr7A 26822216 26823150 934 True 996.0 996 85.9420 955 1889 1 chr7A.!!$R1 934
6 TraesCS2B01G628900 chr7D 26558456 26559399 943 True 1182.0 1182 89.3230 948 1889 1 chr7D.!!$R2 941
7 TraesCS2B01G628900 chr7D 25897006 25897948 942 True 1022.0 1022 86.2720 947 1889 1 chr7D.!!$R1 942
8 TraesCS2B01G628900 chr4A 710675684 710676623 939 True 1168.0 1168 89.1240 947 1889 1 chr4A.!!$R2 942
9 TraesCS2B01G628900 chr4A 710271238 710272158 920 True 1022.0 1022 86.7170 963 1885 1 chr4A.!!$R1 922
10 TraesCS2B01G628900 chr2D 338330213 338331100 887 True 1072.0 1072 88.4530 949 1838 1 chr2D.!!$R1 889
11 TraesCS2B01G628900 chr2D 531341919 531342887 968 False 554.5 833 87.8515 1 956 2 chr2D.!!$F2 955
12 TraesCS2B01G628900 chr2D 595258697 595259664 967 True 542.5 809 87.5675 1 956 2 chr2D.!!$R3 955
13 TraesCS2B01G628900 chr2A 448293315 448294196 881 True 1042.0 1042 87.9950 957 1838 1 chr2A.!!$R1 881
14 TraesCS2B01G628900 chr2A 652521067 652522054 987 False 585.0 896 88.2335 1 958 2 chr2A.!!$F3 957
15 TraesCS2B01G628900 chr3B 224956089 224956970 881 True 1037.0 1037 87.8820 957 1838 1 chr3B.!!$R2 881
16 TraesCS2B01G628900 chr3A 275492759 275493400 641 False 957.0 957 93.6240 2221 2861 1 chr3A.!!$F1 640
17 TraesCS2B01G628900 chr1D 310269322 310269963 641 True 957.0 957 93.6140 2222 2861 1 chr1D.!!$R1 639
18 TraesCS2B01G628900 chr1B 503369576 503370218 642 True 957.0 957 93.6240 2222 2861 1 chr1B.!!$R1 639
19 TraesCS2B01G628900 chr1B 528404142 528404780 638 True 953.0 953 93.5940 2222 2861 1 chr1B.!!$R2 639
20 TraesCS2B01G628900 chr5B 556908467 556909106 639 True 955.0 955 93.5940 2222 2861 1 chr5B.!!$R2 639
21 TraesCS2B01G628900 chr7B 556778874 556779512 638 True 953.0 953 93.5940 2222 2861 1 chr7B.!!$R1 639
22 TraesCS2B01G628900 chr4B 487999024 487999662 638 True 953.0 953 93.5940 2222 2861 1 chr4B.!!$R1 639

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
992 1067 1.810532 GTGACCTCCCGAGCTACTG 59.189 63.158 0.0 0.0 0.0 2.74 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2020 2098 0.03101 AGATACCCACACCCCTCTCC 60.031 60.0 0.0 0.0 0.0 3.71 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
212 215 7.463431 GGTTCCTAGTCTCCTAGATGAATAGA 58.537 42.308 15.80 5.14 42.90 1.98
970 1045 4.335647 CTGCCAAGGACCTGCGGT 62.336 66.667 11.07 0.00 39.44 5.68
992 1067 1.810532 GTGACCTCCCGAGCTACTG 59.189 63.158 0.00 0.00 0.00 2.74
1026 1101 4.863548 ACCCTGATGACATCATGTTCAAT 58.136 39.130 18.28 0.00 38.85 2.57
1047 1122 3.710326 TTCTTCATCCACGAGATACCG 57.290 47.619 0.00 0.00 32.37 4.02
1068 1143 3.381983 ATGTCGCAGGCGTCAGGA 61.382 61.111 17.37 0.00 40.25 3.86
1185 1260 3.947841 GCTCGCAACAACGTGCCA 61.948 61.111 0.00 0.00 44.38 4.92
1223 1298 1.303317 GCATCGGGTCCAACCTGTT 60.303 57.895 4.92 0.00 45.01 3.16
1314 1389 1.005037 GAGCACCACGGTGATGTCA 60.005 57.895 20.42 0.00 45.31 3.58
1320 1395 1.351017 ACCACGGTGATGTCAAAGGAT 59.649 47.619 10.28 0.00 0.00 3.24
1425 1503 3.112709 GTCGCACTTCCGCCAGAC 61.113 66.667 0.00 0.00 0.00 3.51
1470 1548 1.664649 CATGCTGTCGACGTGGTGT 60.665 57.895 11.62 0.00 0.00 4.16
1542 1620 2.126031 GGGTGGAACTCGTCGCTC 60.126 66.667 0.00 0.00 36.74 5.03
1581 1659 4.720902 CCGATGGTGTGCTGGCCA 62.721 66.667 4.71 4.71 39.33 5.36
1584 1662 1.597797 CGATGGTGTGCTGGCCATTT 61.598 55.000 5.51 0.00 44.73 2.32
1588 1666 0.681175 GGTGTGCTGGCCATTTTTCT 59.319 50.000 5.51 0.00 0.00 2.52
1598 1676 1.457346 CCATTTTTCTCGGAGCAGCT 58.543 50.000 0.00 0.00 0.00 4.24
1668 1746 0.684805 GGGATGACGTGAGGAGGACT 60.685 60.000 0.00 0.00 0.00 3.85
1680 1758 1.305718 GAGGACTGAGGTGGAGGCT 60.306 63.158 0.00 0.00 0.00 4.58
1681 1759 1.611851 AGGACTGAGGTGGAGGCTG 60.612 63.158 0.00 0.00 0.00 4.85
1684 1762 1.460305 ACTGAGGTGGAGGCTGTGT 60.460 57.895 0.00 0.00 0.00 3.72
1705 1783 4.843331 GGGAGGCCATGGAGGGGA 62.843 72.222 18.40 0.00 38.09 4.81
1725 1803 3.077556 AAGGGGCGAGAGATGCGT 61.078 61.111 0.00 0.00 0.00 5.24
1803 1881 1.334556 TCCATGCGCAATGTTGATAGC 59.665 47.619 17.11 0.00 34.11 2.97
1829 1907 1.303155 AAGAGGTGCTGCTGGCTTC 60.303 57.895 0.00 0.00 42.39 3.86
1835 1913 0.316204 GTGCTGCTGGCTTCAAACAT 59.684 50.000 0.00 0.00 42.39 2.71
1838 1916 0.389426 CTGCTGGCTTCAAACATGCC 60.389 55.000 0.00 0.00 44.29 4.40
1851 1929 3.598019 AACATGCCAATTAAGCTGGTG 57.402 42.857 7.91 3.00 36.24 4.17
1854 1932 3.770933 ACATGCCAATTAAGCTGGTGAAT 59.229 39.130 7.91 0.00 36.24 2.57
1855 1933 4.955450 ACATGCCAATTAAGCTGGTGAATA 59.045 37.500 7.91 0.00 36.24 1.75
1859 1937 6.339730 TGCCAATTAAGCTGGTGAATAAATG 58.660 36.000 7.91 0.00 36.24 2.32
1861 1939 7.147689 TGCCAATTAAGCTGGTGAATAAATGAT 60.148 33.333 7.91 0.00 36.24 2.45
1864 1942 9.806203 CAATTAAGCTGGTGAATAAATGATTGA 57.194 29.630 0.00 0.00 0.00 2.57
1885 1963 4.021456 TGATTTGGAGAGTCTGAAGCGTTA 60.021 41.667 0.00 0.00 0.00 3.18
1889 1967 4.894784 TGGAGAGTCTGAAGCGTTAATTT 58.105 39.130 0.00 0.00 0.00 1.82
1890 1968 5.305585 TGGAGAGTCTGAAGCGTTAATTTT 58.694 37.500 0.00 0.00 0.00 1.82
1891 1969 6.460781 TGGAGAGTCTGAAGCGTTAATTTTA 58.539 36.000 0.00 0.00 0.00 1.52
1892 1970 6.590292 TGGAGAGTCTGAAGCGTTAATTTTAG 59.410 38.462 0.00 0.00 0.00 1.85
1893 1971 6.410243 AGAGTCTGAAGCGTTAATTTTAGC 57.590 37.500 0.00 0.00 0.00 3.09
1894 1972 6.166982 AGAGTCTGAAGCGTTAATTTTAGCT 58.833 36.000 0.00 0.00 42.35 3.32
1895 1973 6.311690 AGAGTCTGAAGCGTTAATTTTAGCTC 59.688 38.462 0.00 0.00 39.25 4.09
1896 1974 5.062308 AGTCTGAAGCGTTAATTTTAGCTCG 59.938 40.000 0.00 0.00 39.25 5.03
1897 1975 3.998522 TGAAGCGTTAATTTTAGCTCGC 58.001 40.909 4.19 4.19 39.25 5.03
1898 1976 3.433957 TGAAGCGTTAATTTTAGCTCGCA 59.566 39.130 13.59 2.50 44.83 5.10
1899 1977 4.083749 TGAAGCGTTAATTTTAGCTCGCAA 60.084 37.500 13.59 0.00 44.83 4.85
1900 1978 4.413495 AGCGTTAATTTTAGCTCGCAAA 57.587 36.364 13.59 2.06 44.83 3.68
1901 1979 4.789784 AGCGTTAATTTTAGCTCGCAAAA 58.210 34.783 13.59 5.29 44.83 2.44
1902 1980 5.399013 AGCGTTAATTTTAGCTCGCAAAAT 58.601 33.333 13.59 7.28 44.83 1.82
1903 1981 5.861787 AGCGTTAATTTTAGCTCGCAAAATT 59.138 32.000 17.93 17.93 44.02 1.82
1904 1982 7.024768 AGCGTTAATTTTAGCTCGCAAAATTA 58.975 30.769 16.42 16.42 41.46 1.40
1905 1983 7.700656 AGCGTTAATTTTAGCTCGCAAAATTAT 59.299 29.630 19.20 7.97 42.74 1.28
1906 1984 7.991046 GCGTTAATTTTAGCTCGCAAAATTATC 59.009 33.333 19.20 17.46 42.74 1.75
1907 1985 9.221775 CGTTAATTTTAGCTCGCAAAATTATCT 57.778 29.630 19.20 4.36 42.74 1.98
1927 2005 8.874744 TTATCTTATACTAGTAAGATGCCCGT 57.125 34.615 22.88 6.64 45.96 5.28
1928 2006 6.570672 TCTTATACTAGTAAGATGCCCGTG 57.429 41.667 6.70 0.00 36.15 4.94
1929 2007 3.662247 ATACTAGTAAGATGCCCGTGC 57.338 47.619 6.70 0.00 38.26 5.34
1930 2008 0.102481 ACTAGTAAGATGCCCGTGCG 59.898 55.000 0.00 0.00 41.78 5.34
1931 2009 0.102481 CTAGTAAGATGCCCGTGCGT 59.898 55.000 0.00 0.00 41.78 5.24
1932 2010 0.533491 TAGTAAGATGCCCGTGCGTT 59.467 50.000 0.00 0.00 41.78 4.84
1933 2011 0.533491 AGTAAGATGCCCGTGCGTTA 59.467 50.000 0.00 0.00 41.78 3.18
1934 2012 0.648958 GTAAGATGCCCGTGCGTTAC 59.351 55.000 0.00 0.00 41.78 2.50
1935 2013 0.246910 TAAGATGCCCGTGCGTTACA 59.753 50.000 0.00 0.00 41.78 2.41
1936 2014 1.296056 AAGATGCCCGTGCGTTACAC 61.296 55.000 0.00 0.00 46.45 2.90
1948 2026 4.884458 TGCGTTACACAAAACATCAAGA 57.116 36.364 0.00 0.00 0.00 3.02
1949 2027 5.431420 TGCGTTACACAAAACATCAAGAT 57.569 34.783 0.00 0.00 0.00 2.40
1950 2028 5.211454 TGCGTTACACAAAACATCAAGATG 58.789 37.500 8.45 8.45 44.15 2.90
1951 2029 4.088496 GCGTTACACAAAACATCAAGATGC 59.912 41.667 9.85 0.00 42.39 3.91
1952 2030 5.211454 CGTTACACAAAACATCAAGATGCA 58.789 37.500 9.85 0.00 42.39 3.96
1953 2031 5.858049 CGTTACACAAAACATCAAGATGCAT 59.142 36.000 9.85 0.00 42.39 3.96
1954 2032 6.363088 CGTTACACAAAACATCAAGATGCATT 59.637 34.615 9.85 3.38 42.39 3.56
1955 2033 7.096106 CGTTACACAAAACATCAAGATGCATTT 60.096 33.333 9.85 8.77 42.39 2.32
1956 2034 6.533819 ACACAAAACATCAAGATGCATTTG 57.466 33.333 24.88 24.88 45.01 2.32
1961 2039 8.468720 CAAAACATCAAGATGCATTTGTATGA 57.531 30.769 21.57 15.31 42.39 2.15
1962 2040 8.592155 CAAAACATCAAGATGCATTTGTATGAG 58.408 33.333 21.57 12.56 42.39 2.90
1963 2041 7.400599 AACATCAAGATGCATTTGTATGAGT 57.599 32.000 22.17 12.92 42.39 3.41
1964 2042 8.510243 AACATCAAGATGCATTTGTATGAGTA 57.490 30.769 22.17 8.59 42.39 2.59
1965 2043 8.151141 ACATCAAGATGCATTTGTATGAGTAG 57.849 34.615 22.17 12.72 42.39 2.57
1966 2044 7.772292 ACATCAAGATGCATTTGTATGAGTAGT 59.228 33.333 22.17 13.08 42.39 2.73
1967 2045 8.618677 CATCAAGATGCATTTGTATGAGTAGTT 58.381 33.333 0.00 0.00 33.37 2.24
1968 2046 8.565896 TCAAGATGCATTTGTATGAGTAGTTT 57.434 30.769 0.00 0.00 33.37 2.66
1969 2047 9.665719 TCAAGATGCATTTGTATGAGTAGTTTA 57.334 29.630 0.00 0.00 33.37 2.01
1978 2056 8.942669 TTTGTATGAGTAGTTTATTTTGTGCG 57.057 30.769 0.00 0.00 0.00 5.34
1979 2057 7.892778 TGTATGAGTAGTTTATTTTGTGCGA 57.107 32.000 0.00 0.00 0.00 5.10
1980 2058 7.959733 TGTATGAGTAGTTTATTTTGTGCGAG 58.040 34.615 0.00 0.00 0.00 5.03
1981 2059 7.815549 TGTATGAGTAGTTTATTTTGTGCGAGA 59.184 33.333 0.00 0.00 0.00 4.04
1982 2060 7.667043 ATGAGTAGTTTATTTTGTGCGAGAA 57.333 32.000 0.00 0.00 0.00 2.87
1983 2061 7.485418 TGAGTAGTTTATTTTGTGCGAGAAA 57.515 32.000 0.00 0.00 0.00 2.52
1984 2062 7.921787 TGAGTAGTTTATTTTGTGCGAGAAAA 58.078 30.769 0.00 0.00 0.00 2.29
1985 2063 8.564574 TGAGTAGTTTATTTTGTGCGAGAAAAT 58.435 29.630 8.34 8.34 36.98 1.82
1986 2064 8.728088 AGTAGTTTATTTTGTGCGAGAAAATG 57.272 30.769 11.55 0.00 35.25 2.32
1987 2065 8.564574 AGTAGTTTATTTTGTGCGAGAAAATGA 58.435 29.630 11.55 4.21 35.25 2.57
1988 2066 9.341899 GTAGTTTATTTTGTGCGAGAAAATGAT 57.658 29.630 11.55 2.38 35.25 2.45
1989 2067 8.231304 AGTTTATTTTGTGCGAGAAAATGATG 57.769 30.769 11.55 0.00 35.25 3.07
1990 2068 8.081633 AGTTTATTTTGTGCGAGAAAATGATGA 58.918 29.630 11.55 0.00 35.25 2.92
1991 2069 8.698854 GTTTATTTTGTGCGAGAAAATGATGAA 58.301 29.630 11.55 0.53 35.25 2.57
1992 2070 8.809159 TTATTTTGTGCGAGAAAATGATGAAA 57.191 26.923 11.55 0.00 35.25 2.69
1993 2071 6.509317 TTTTGTGCGAGAAAATGATGAAAC 57.491 33.333 0.00 0.00 0.00 2.78
1994 2072 3.809234 TGTGCGAGAAAATGATGAAACG 58.191 40.909 0.00 0.00 0.00 3.60
1995 2073 3.496507 TGTGCGAGAAAATGATGAAACGA 59.503 39.130 0.00 0.00 0.00 3.85
1996 2074 4.084507 GTGCGAGAAAATGATGAAACGAG 58.915 43.478 0.00 0.00 0.00 4.18
1997 2075 3.125146 TGCGAGAAAATGATGAAACGAGG 59.875 43.478 0.00 0.00 0.00 4.63
1998 2076 3.485877 GCGAGAAAATGATGAAACGAGGG 60.486 47.826 0.00 0.00 0.00 4.30
1999 2077 3.932710 CGAGAAAATGATGAAACGAGGGA 59.067 43.478 0.00 0.00 0.00 4.20
2000 2078 4.391830 CGAGAAAATGATGAAACGAGGGAA 59.608 41.667 0.00 0.00 0.00 3.97
2001 2079 5.446473 CGAGAAAATGATGAAACGAGGGAAG 60.446 44.000 0.00 0.00 0.00 3.46
2002 2080 4.702131 AGAAAATGATGAAACGAGGGAAGG 59.298 41.667 0.00 0.00 0.00 3.46
2003 2081 2.044123 ATGATGAAACGAGGGAAGGC 57.956 50.000 0.00 0.00 0.00 4.35
2004 2082 0.035439 TGATGAAACGAGGGAAGGCC 60.035 55.000 0.00 0.00 0.00 5.19
2021 2099 6.993079 GGAAGGCCCTTATTTGTAAATATGG 58.007 40.000 16.53 16.53 41.92 2.74
2022 2100 6.780522 GGAAGGCCCTTATTTGTAAATATGGA 59.219 38.462 21.62 0.96 43.55 3.41
2023 2101 7.039714 GGAAGGCCCTTATTTGTAAATATGGAG 60.040 40.741 21.62 15.49 43.55 3.86
2024 2102 7.161715 AGGCCCTTATTTGTAAATATGGAGA 57.838 36.000 21.62 0.41 43.55 3.71
2025 2103 7.234355 AGGCCCTTATTTGTAAATATGGAGAG 58.766 38.462 21.62 11.85 43.55 3.20
2026 2104 6.434340 GGCCCTTATTTGTAAATATGGAGAGG 59.566 42.308 21.62 13.86 43.55 3.69
2027 2105 6.434340 GCCCTTATTTGTAAATATGGAGAGGG 59.566 42.308 21.62 19.99 43.55 4.30
2028 2106 6.948309 CCCTTATTTGTAAATATGGAGAGGGG 59.052 42.308 21.62 8.67 43.55 4.79
2029 2107 7.422562 CCCTTATTTGTAAATATGGAGAGGGGT 60.423 40.741 21.62 0.00 43.55 4.95
2030 2108 7.448469 CCTTATTTGTAAATATGGAGAGGGGTG 59.552 40.741 17.77 0.00 43.55 4.61
2031 2109 5.789574 TTTGTAAATATGGAGAGGGGTGT 57.210 39.130 0.00 0.00 0.00 4.16
2032 2110 4.771114 TGTAAATATGGAGAGGGGTGTG 57.229 45.455 0.00 0.00 0.00 3.82
2033 2111 3.458118 TGTAAATATGGAGAGGGGTGTGG 59.542 47.826 0.00 0.00 0.00 4.17
2034 2112 1.522900 AATATGGAGAGGGGTGTGGG 58.477 55.000 0.00 0.00 0.00 4.61
2035 2113 0.346932 ATATGGAGAGGGGTGTGGGT 59.653 55.000 0.00 0.00 0.00 4.51
2036 2114 1.020462 TATGGAGAGGGGTGTGGGTA 58.980 55.000 0.00 0.00 0.00 3.69
2037 2115 0.346932 ATGGAGAGGGGTGTGGGTAT 59.653 55.000 0.00 0.00 0.00 2.73
2038 2116 0.326238 TGGAGAGGGGTGTGGGTATC 60.326 60.000 0.00 0.00 0.00 2.24
2039 2117 0.031010 GGAGAGGGGTGTGGGTATCT 60.031 60.000 0.00 0.00 0.00 1.98
2040 2118 1.625508 GGAGAGGGGTGTGGGTATCTT 60.626 57.143 0.00 0.00 0.00 2.40
2041 2119 2.197465 GAGAGGGGTGTGGGTATCTTT 58.803 52.381 0.00 0.00 0.00 2.52
2042 2120 2.576648 GAGAGGGGTGTGGGTATCTTTT 59.423 50.000 0.00 0.00 0.00 2.27
2043 2121 3.778629 GAGAGGGGTGTGGGTATCTTTTA 59.221 47.826 0.00 0.00 0.00 1.52
2044 2122 3.522343 AGAGGGGTGTGGGTATCTTTTAC 59.478 47.826 0.00 0.00 0.00 2.01
2045 2123 3.261962 AGGGGTGTGGGTATCTTTTACA 58.738 45.455 0.00 0.00 0.00 2.41
2046 2124 3.658705 AGGGGTGTGGGTATCTTTTACAA 59.341 43.478 0.00 0.00 0.00 2.41
2047 2125 4.106663 AGGGGTGTGGGTATCTTTTACAAA 59.893 41.667 0.00 0.00 0.00 2.83
2048 2126 4.833938 GGGGTGTGGGTATCTTTTACAAAA 59.166 41.667 0.00 0.00 0.00 2.44
2049 2127 5.482526 GGGGTGTGGGTATCTTTTACAAAAT 59.517 40.000 0.00 0.00 0.00 1.82
2050 2128 6.014070 GGGGTGTGGGTATCTTTTACAAAATT 60.014 38.462 0.00 0.00 0.00 1.82
2051 2129 6.871492 GGGTGTGGGTATCTTTTACAAAATTG 59.129 38.462 0.00 0.00 0.00 2.32
2052 2130 7.438564 GGTGTGGGTATCTTTTACAAAATTGT 58.561 34.615 4.01 4.01 44.86 2.71
2053 2131 7.597369 GGTGTGGGTATCTTTTACAAAATTGTC 59.403 37.037 1.37 0.00 42.35 3.18
2054 2132 8.138712 GTGTGGGTATCTTTTACAAAATTGTCA 58.861 33.333 1.37 0.00 42.35 3.58
2055 2133 8.865090 TGTGGGTATCTTTTACAAAATTGTCAT 58.135 29.630 1.37 0.00 42.35 3.06
2071 2149 9.860898 AAAATTGTCATAGTTTGCTTTCTATCC 57.139 29.630 0.00 0.00 0.00 2.59
2072 2150 6.662414 TTGTCATAGTTTGCTTTCTATCCG 57.338 37.500 0.00 0.00 0.00 4.18
2073 2151 5.730550 TGTCATAGTTTGCTTTCTATCCGT 58.269 37.500 0.00 0.00 0.00 4.69
2074 2152 5.580691 TGTCATAGTTTGCTTTCTATCCGTG 59.419 40.000 0.00 0.00 0.00 4.94
2075 2153 5.810587 GTCATAGTTTGCTTTCTATCCGTGA 59.189 40.000 0.00 0.00 0.00 4.35
2076 2154 6.019479 GTCATAGTTTGCTTTCTATCCGTGAG 60.019 42.308 0.00 0.00 0.00 3.51
2077 2155 4.537135 AGTTTGCTTTCTATCCGTGAGA 57.463 40.909 0.00 0.00 0.00 3.27
2078 2156 5.091261 AGTTTGCTTTCTATCCGTGAGAT 57.909 39.130 0.00 0.00 39.15 2.75
2079 2157 6.222038 AGTTTGCTTTCTATCCGTGAGATA 57.778 37.500 0.00 0.00 36.33 1.98
2080 2158 6.821388 AGTTTGCTTTCTATCCGTGAGATAT 58.179 36.000 0.00 0.00 36.84 1.63
2081 2159 7.952671 AGTTTGCTTTCTATCCGTGAGATATA 58.047 34.615 0.00 0.00 36.84 0.86
2082 2160 8.421784 AGTTTGCTTTCTATCCGTGAGATATAA 58.578 33.333 0.00 0.00 36.84 0.98
2083 2161 9.042008 GTTTGCTTTCTATCCGTGAGATATAAA 57.958 33.333 0.00 0.00 36.84 1.40
2084 2162 9.778741 TTTGCTTTCTATCCGTGAGATATAAAT 57.221 29.630 0.00 0.00 36.84 1.40
2085 2163 8.988064 TGCTTTCTATCCGTGAGATATAAATC 57.012 34.615 0.00 0.00 36.84 2.17
2086 2164 7.755373 TGCTTTCTATCCGTGAGATATAAATCG 59.245 37.037 0.00 0.00 36.84 3.34
2087 2165 7.221067 GCTTTCTATCCGTGAGATATAAATCGG 59.779 40.741 0.00 0.00 36.84 4.18
2090 2168 4.414999 TCCGTGAGATATAAATCGGACG 57.585 45.455 0.00 0.00 41.45 4.79
2091 2169 4.067192 TCCGTGAGATATAAATCGGACGA 58.933 43.478 0.00 0.00 40.86 4.20
2092 2170 4.698780 TCCGTGAGATATAAATCGGACGAT 59.301 41.667 0.65 0.65 40.86 3.73
2093 2171 5.029014 CCGTGAGATATAAATCGGACGATC 58.971 45.833 7.75 0.00 40.86 3.69
2094 2172 5.163744 CCGTGAGATATAAATCGGACGATCT 60.164 44.000 7.75 0.34 40.86 2.75
2095 2173 6.036844 CCGTGAGATATAAATCGGACGATCTA 59.963 42.308 7.75 0.00 40.86 1.98
2096 2174 7.254829 CCGTGAGATATAAATCGGACGATCTAT 60.255 40.741 7.75 6.72 40.86 1.98
2097 2175 8.762426 CGTGAGATATAAATCGGACGATCTATA 58.238 37.037 7.75 8.71 40.86 1.31
2101 2179 9.900710 AGATATAAATCGGACGATCTATATTGC 57.099 33.333 16.99 9.04 33.39 3.56
2102 2180 9.678941 GATATAAATCGGACGATCTATATTGCA 57.321 33.333 16.99 0.00 33.39 4.08
2103 2181 7.993821 ATAAATCGGACGATCTATATTGCAG 57.006 36.000 7.75 0.00 33.08 4.41
2104 2182 3.850122 TCGGACGATCTATATTGCAGG 57.150 47.619 0.00 0.00 0.00 4.85
2105 2183 3.418047 TCGGACGATCTATATTGCAGGA 58.582 45.455 0.00 0.00 0.00 3.86
2106 2184 4.017126 TCGGACGATCTATATTGCAGGAT 58.983 43.478 0.00 0.00 0.00 3.24
2107 2185 4.108336 CGGACGATCTATATTGCAGGATG 58.892 47.826 0.00 0.00 40.87 3.51
2108 2186 4.437239 GGACGATCTATATTGCAGGATGG 58.563 47.826 0.00 0.00 35.86 3.51
2109 2187 3.866651 ACGATCTATATTGCAGGATGGC 58.133 45.455 0.00 0.00 35.86 4.40
2110 2188 3.261643 ACGATCTATATTGCAGGATGGCA 59.738 43.478 0.00 0.00 43.19 4.92
2111 2189 3.869832 CGATCTATATTGCAGGATGGCAG 59.130 47.826 0.00 0.00 45.88 4.85
2112 2190 4.382362 CGATCTATATTGCAGGATGGCAGA 60.382 45.833 0.00 0.00 45.88 4.26
2113 2191 4.277515 TCTATATTGCAGGATGGCAGAC 57.722 45.455 0.00 0.00 45.88 3.51
2114 2192 3.647590 TCTATATTGCAGGATGGCAGACA 59.352 43.478 0.00 0.00 45.88 3.41
2115 2193 2.042686 TATTGCAGGATGGCAGACAC 57.957 50.000 0.00 0.00 45.88 3.67
2116 2194 0.038599 ATTGCAGGATGGCAGACACA 59.961 50.000 0.00 0.00 45.88 3.72
2117 2195 0.890542 TTGCAGGATGGCAGACACAC 60.891 55.000 0.00 0.00 45.88 3.82
2118 2196 2.042831 GCAGGATGGCAGACACACC 61.043 63.158 0.00 0.00 35.86 4.16
2119 2197 1.376086 CAGGATGGCAGACACACCA 59.624 57.895 4.37 0.00 41.06 4.17
2124 2202 2.048444 ATGGCAGACACACCATCATC 57.952 50.000 0.00 0.00 43.26 2.92
2125 2203 0.691904 TGGCAGACACACCATCATCA 59.308 50.000 0.00 0.00 0.00 3.07
2126 2204 1.089920 GGCAGACACACCATCATCAC 58.910 55.000 0.00 0.00 0.00 3.06
2127 2205 1.089920 GCAGACACACCATCATCACC 58.910 55.000 0.00 0.00 0.00 4.02
2128 2206 1.611410 GCAGACACACCATCATCACCA 60.611 52.381 0.00 0.00 0.00 4.17
2129 2207 2.781923 CAGACACACCATCATCACCAA 58.218 47.619 0.00 0.00 0.00 3.67
2130 2208 2.485426 CAGACACACCATCATCACCAAC 59.515 50.000 0.00 0.00 0.00 3.77
2131 2209 2.373169 AGACACACCATCATCACCAACT 59.627 45.455 0.00 0.00 0.00 3.16
2132 2210 2.744202 GACACACCATCATCACCAACTC 59.256 50.000 0.00 0.00 0.00 3.01
2133 2211 2.086869 CACACCATCATCACCAACTCC 58.913 52.381 0.00 0.00 0.00 3.85
2134 2212 1.339055 ACACCATCATCACCAACTCCG 60.339 52.381 0.00 0.00 0.00 4.63
2135 2213 0.984230 ACCATCATCACCAACTCCGT 59.016 50.000 0.00 0.00 0.00 4.69
2136 2214 1.351017 ACCATCATCACCAACTCCGTT 59.649 47.619 0.00 0.00 0.00 4.44
2137 2215 2.224769 ACCATCATCACCAACTCCGTTT 60.225 45.455 0.00 0.00 0.00 3.60
2138 2216 2.819608 CCATCATCACCAACTCCGTTTT 59.180 45.455 0.00 0.00 0.00 2.43
2139 2217 3.255642 CCATCATCACCAACTCCGTTTTT 59.744 43.478 0.00 0.00 0.00 1.94
2179 2257 9.969001 ATAAGAGTAGAGATTATACTCCAGGAC 57.031 37.037 9.00 0.00 46.84 3.85
2180 2258 6.469410 AGAGTAGAGATTATACTCCAGGACG 58.531 44.000 9.00 0.00 46.84 4.79
2181 2259 5.562635 AGTAGAGATTATACTCCAGGACGG 58.437 45.833 0.00 0.00 37.60 4.79
2182 2260 4.726035 AGAGATTATACTCCAGGACGGA 57.274 45.455 0.00 0.00 43.61 4.69
2189 2267 2.684104 TCCAGGACGGAGGGAGAG 59.316 66.667 0.00 0.00 39.64 3.20
2190 2268 2.443016 CCAGGACGGAGGGAGAGG 60.443 72.222 0.00 0.00 36.56 3.69
2191 2269 2.443016 CAGGACGGAGGGAGAGGG 60.443 72.222 0.00 0.00 0.00 4.30
2192 2270 2.617538 AGGACGGAGGGAGAGGGA 60.618 66.667 0.00 0.00 0.00 4.20
2193 2271 2.123640 GGACGGAGGGAGAGGGAG 60.124 72.222 0.00 0.00 0.00 4.30
2194 2272 2.684735 GACGGAGGGAGAGGGAGT 59.315 66.667 0.00 0.00 0.00 3.85
2195 2273 1.643475 GGACGGAGGGAGAGGGAGTA 61.643 65.000 0.00 0.00 0.00 2.59
2196 2274 0.258194 GACGGAGGGAGAGGGAGTAA 59.742 60.000 0.00 0.00 0.00 2.24
2197 2275 0.259356 ACGGAGGGAGAGGGAGTAAG 59.741 60.000 0.00 0.00 0.00 2.34
2198 2276 0.551879 CGGAGGGAGAGGGAGTAAGA 59.448 60.000 0.00 0.00 0.00 2.10
2199 2277 1.063867 CGGAGGGAGAGGGAGTAAGAA 60.064 57.143 0.00 0.00 0.00 2.52
2200 2278 2.673258 GGAGGGAGAGGGAGTAAGAAG 58.327 57.143 0.00 0.00 0.00 2.85
2201 2279 2.023791 GGAGGGAGAGGGAGTAAGAAGT 60.024 54.545 0.00 0.00 0.00 3.01
2202 2280 3.204831 GGAGGGAGAGGGAGTAAGAAGTA 59.795 52.174 0.00 0.00 0.00 2.24
2203 2281 4.466827 GAGGGAGAGGGAGTAAGAAGTAG 58.533 52.174 0.00 0.00 0.00 2.57
2204 2282 3.859859 AGGGAGAGGGAGTAAGAAGTAGT 59.140 47.826 0.00 0.00 0.00 2.73
2205 2283 5.045140 AGGGAGAGGGAGTAAGAAGTAGTA 58.955 45.833 0.00 0.00 0.00 1.82
2206 2284 5.495436 AGGGAGAGGGAGTAAGAAGTAGTAA 59.505 44.000 0.00 0.00 0.00 2.24
2207 2285 5.593909 GGGAGAGGGAGTAAGAAGTAGTAAC 59.406 48.000 0.00 0.00 0.00 2.50
2208 2286 5.593909 GGAGAGGGAGTAAGAAGTAGTAACC 59.406 48.000 0.00 0.00 0.00 2.85
2209 2287 6.150034 AGAGGGAGTAAGAAGTAGTAACCA 57.850 41.667 0.00 0.00 0.00 3.67
2210 2288 6.559429 AGAGGGAGTAAGAAGTAGTAACCAA 58.441 40.000 0.00 0.00 0.00 3.67
2211 2289 7.190501 AGAGGGAGTAAGAAGTAGTAACCAAT 58.809 38.462 0.00 0.00 0.00 3.16
2212 2290 7.342541 AGAGGGAGTAAGAAGTAGTAACCAATC 59.657 40.741 0.00 0.00 0.00 2.67
2213 2291 6.383436 AGGGAGTAAGAAGTAGTAACCAATCC 59.617 42.308 0.00 0.00 0.00 3.01
2214 2292 6.155737 GGGAGTAAGAAGTAGTAACCAATCCA 59.844 42.308 0.00 0.00 0.00 3.41
2215 2293 7.147532 GGGAGTAAGAAGTAGTAACCAATCCAT 60.148 40.741 0.00 0.00 0.00 3.41
2216 2294 8.265764 GGAGTAAGAAGTAGTAACCAATCCATT 58.734 37.037 0.00 0.00 0.00 3.16
2217 2295 9.668497 GAGTAAGAAGTAGTAACCAATCCATTT 57.332 33.333 0.00 0.00 0.00 2.32
2218 2296 9.668497 AGTAAGAAGTAGTAACCAATCCATTTC 57.332 33.333 0.00 0.00 0.00 2.17
2219 2297 7.939784 AAGAAGTAGTAACCAATCCATTTCC 57.060 36.000 0.00 0.00 0.00 3.13
2381 2459 8.983702 AAGTTGGAATACAGTAGGTTTAACAA 57.016 30.769 0.00 0.00 0.00 2.83
2460 2538 6.561737 TTATACTAACGGAGCTCATGAGAG 57.438 41.667 27.04 14.51 44.96 3.20
2466 2546 3.357203 ACGGAGCTCATGAGAGTTTCTA 58.643 45.455 27.04 0.00 44.00 2.10
2560 2640 1.002857 AGCCTAAACTTGGGGATGCT 58.997 50.000 0.00 0.00 0.00 3.79
2601 2684 3.486383 TCAAGGACAACCAAAAGCCTAG 58.514 45.455 0.00 0.00 38.94 3.02
2684 2768 9.120538 ACTTGTCGCTATATTTTTATTCACCAT 57.879 29.630 0.00 0.00 0.00 3.55
2760 2844 5.815581 AGTTTACCACAATCATCCTTGCTA 58.184 37.500 0.00 0.00 0.00 3.49
2772 2856 5.428253 TCATCCTTGCTATACACACCTTTC 58.572 41.667 0.00 0.00 0.00 2.62
2775 2859 4.020928 TCCTTGCTATACACACCTTTCGAA 60.021 41.667 0.00 0.00 0.00 3.71
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
212 215 8.058667 TGCATCAATTGACTATTGTTGAAGAT 57.941 30.769 11.07 0.98 42.60 2.40
777 846 3.557185 CACTTATGATGGTGGTGATGTCG 59.443 47.826 0.00 0.00 0.00 4.35
970 1045 4.373116 GCTCGGGAGGTCACGCAA 62.373 66.667 0.00 0.00 43.59 4.85
1026 1101 3.181479 CCGGTATCTCGTGGATGAAGAAA 60.181 47.826 0.00 0.00 35.98 2.52
1068 1143 0.401738 CCCAGGTGTTGATGACCACT 59.598 55.000 0.00 0.00 35.76 4.00
1185 1260 1.831652 CGGTGACAGGGCTCTCCTTT 61.832 60.000 0.00 0.00 45.47 3.11
1314 1389 4.217118 GCGAATTCCAGCATATGATCCTTT 59.783 41.667 6.97 0.00 0.00 3.11
1320 1395 1.866601 CACGCGAATTCCAGCATATGA 59.133 47.619 15.93 0.00 0.00 2.15
1400 1475 2.742372 GAAGTGCGACCATGCCGT 60.742 61.111 7.41 0.00 0.00 5.68
1403 1478 4.166011 GCGGAAGTGCGACCATGC 62.166 66.667 0.00 0.00 0.00 4.06
1405 1480 3.958147 CTGGCGGAAGTGCGACCAT 62.958 63.158 8.32 0.00 35.06 3.55
1409 1487 2.765250 GAAGTCTGGCGGAAGTGCGA 62.765 60.000 0.00 0.00 35.06 5.10
1425 1503 1.607509 CCCTCCATCGCTGCATAGAAG 60.608 57.143 0.00 0.00 0.00 2.85
1581 1659 2.079925 GTCAGCTGCTCCGAGAAAAAT 58.920 47.619 9.47 0.00 0.00 1.82
1584 1662 1.293498 GGTCAGCTGCTCCGAGAAA 59.707 57.895 9.47 0.00 0.00 2.52
1588 1666 2.210013 AGTTGGTCAGCTGCTCCGA 61.210 57.895 9.47 11.00 0.00 4.55
1598 1676 1.134340 ACTTGTAACGGCAGTTGGTCA 60.134 47.619 12.79 6.29 41.35 4.02
1668 1746 0.685097 GTAACACAGCCTCCACCTCA 59.315 55.000 0.00 0.00 0.00 3.86
1680 1758 1.298340 CATGGCCTCCCGTAACACA 59.702 57.895 3.32 0.00 0.00 3.72
1681 1759 1.451387 CCATGGCCTCCCGTAACAC 60.451 63.158 3.32 0.00 0.00 3.32
1684 1762 2.070039 CCTCCATGGCCTCCCGTAA 61.070 63.158 6.96 0.00 0.00 3.18
1705 1783 1.524482 GCATCTCTCGCCCCTTCTT 59.476 57.895 0.00 0.00 0.00 2.52
1767 1845 1.153349 GGACCTTCCATCACGCCTC 60.153 63.158 0.00 0.00 36.28 4.70
1768 1846 1.918293 TGGACCTTCCATCACGCCT 60.918 57.895 0.00 0.00 42.67 5.52
1829 1907 3.680937 CACCAGCTTAATTGGCATGTTTG 59.319 43.478 6.16 0.00 39.39 2.93
1835 1913 5.991933 TTTATTCACCAGCTTAATTGGCA 57.008 34.783 6.16 0.00 39.39 4.92
1838 1916 9.806203 TCAATCATTTATTCACCAGCTTAATTG 57.194 29.630 0.00 0.00 0.00 2.32
1851 1929 9.947669 CAGACTCTCCAAATCAATCATTTATTC 57.052 33.333 0.00 0.00 32.48 1.75
1854 1932 9.170734 CTTCAGACTCTCCAAATCAATCATTTA 57.829 33.333 0.00 0.00 32.48 1.40
1855 1933 7.362747 GCTTCAGACTCTCCAAATCAATCATTT 60.363 37.037 0.00 0.00 34.79 2.32
1859 1937 4.033817 CGCTTCAGACTCTCCAAATCAATC 59.966 45.833 0.00 0.00 0.00 2.67
1861 1939 3.244215 ACGCTTCAGACTCTCCAAATCAA 60.244 43.478 0.00 0.00 0.00 2.57
1864 1942 3.409026 AACGCTTCAGACTCTCCAAAT 57.591 42.857 0.00 0.00 0.00 2.32
1901 1979 9.476928 ACGGGCATCTTACTAGTATAAGATAAT 57.523 33.333 16.89 0.00 45.88 1.28
1902 1980 8.737175 CACGGGCATCTTACTAGTATAAGATAA 58.263 37.037 16.89 0.00 45.88 1.75
1903 1981 7.148120 GCACGGGCATCTTACTAGTATAAGATA 60.148 40.741 16.89 0.00 45.88 1.98
1905 1983 5.048224 GCACGGGCATCTTACTAGTATAAGA 60.048 44.000 3.77 9.91 43.57 2.10
1906 1984 5.162075 GCACGGGCATCTTACTAGTATAAG 58.838 45.833 3.77 1.02 40.72 1.73
1907 1985 4.320714 CGCACGGGCATCTTACTAGTATAA 60.321 45.833 11.77 0.00 41.24 0.98
1908 1986 3.189910 CGCACGGGCATCTTACTAGTATA 59.810 47.826 11.77 0.00 41.24 1.47
1909 1987 2.030185 CGCACGGGCATCTTACTAGTAT 60.030 50.000 11.77 0.00 41.24 2.12
1910 1988 1.335810 CGCACGGGCATCTTACTAGTA 59.664 52.381 11.77 0.00 41.24 1.82
1911 1989 0.102481 CGCACGGGCATCTTACTAGT 59.898 55.000 11.77 0.00 41.24 2.57
1912 1990 0.102481 ACGCACGGGCATCTTACTAG 59.898 55.000 11.77 0.00 41.24 2.57
1913 1991 0.533491 AACGCACGGGCATCTTACTA 59.467 50.000 11.77 0.00 41.24 1.82
1914 1992 0.533491 TAACGCACGGGCATCTTACT 59.467 50.000 11.77 0.00 41.24 2.24
1915 1993 0.648958 GTAACGCACGGGCATCTTAC 59.351 55.000 11.77 8.29 41.24 2.34
1916 1994 0.246910 TGTAACGCACGGGCATCTTA 59.753 50.000 11.77 0.00 41.24 2.10
1917 1995 1.004320 TGTAACGCACGGGCATCTT 60.004 52.632 11.77 0.00 41.24 2.40
1918 1996 1.740296 GTGTAACGCACGGGCATCT 60.740 57.895 11.77 0.00 41.24 2.90
1919 1997 2.782615 GTGTAACGCACGGGCATC 59.217 61.111 11.77 0.00 41.24 3.91
1927 2005 4.884458 TCTTGATGTTTTGTGTAACGCA 57.116 36.364 0.00 0.00 42.39 5.24
1928 2006 4.088496 GCATCTTGATGTTTTGTGTAACGC 59.912 41.667 11.61 0.00 42.39 4.84
1929 2007 5.211454 TGCATCTTGATGTTTTGTGTAACG 58.789 37.500 11.61 0.00 42.39 3.18
1930 2008 7.642071 AATGCATCTTGATGTTTTGTGTAAC 57.358 32.000 0.00 0.00 37.35 2.50
1931 2009 7.710044 ACAAATGCATCTTGATGTTTTGTGTAA 59.290 29.630 26.42 4.91 37.94 2.41
1932 2010 7.208777 ACAAATGCATCTTGATGTTTTGTGTA 58.791 30.769 26.42 3.54 37.94 2.90
1933 2011 6.050432 ACAAATGCATCTTGATGTTTTGTGT 58.950 32.000 26.42 16.66 37.94 3.72
1934 2012 6.533819 ACAAATGCATCTTGATGTTTTGTG 57.466 33.333 26.42 16.26 37.94 3.33
1935 2013 8.089597 TCATACAAATGCATCTTGATGTTTTGT 58.910 29.630 27.97 27.97 40.08 2.83
1936 2014 8.468720 TCATACAAATGCATCTTGATGTTTTG 57.531 30.769 23.40 23.40 35.21 2.44
1937 2015 8.308931 ACTCATACAAATGCATCTTGATGTTTT 58.691 29.630 20.96 9.21 32.76 2.43
1938 2016 7.833786 ACTCATACAAATGCATCTTGATGTTT 58.166 30.769 20.96 3.63 32.76 2.83
1939 2017 7.400599 ACTCATACAAATGCATCTTGATGTT 57.599 32.000 20.96 1.04 32.76 2.71
1940 2018 7.772292 ACTACTCATACAAATGCATCTTGATGT 59.228 33.333 20.96 14.21 32.76 3.06
1941 2019 8.151141 ACTACTCATACAAATGCATCTTGATG 57.849 34.615 20.96 18.39 32.76 3.07
1942 2020 8.743085 AACTACTCATACAAATGCATCTTGAT 57.257 30.769 20.96 11.48 32.76 2.57
1943 2021 8.565896 AAACTACTCATACAAATGCATCTTGA 57.434 30.769 20.96 10.81 32.76 3.02
1952 2030 9.554724 CGCACAAAATAAACTACTCATACAAAT 57.445 29.630 0.00 0.00 0.00 2.32
1953 2031 8.775527 TCGCACAAAATAAACTACTCATACAAA 58.224 29.630 0.00 0.00 0.00 2.83
1954 2032 8.312896 TCGCACAAAATAAACTACTCATACAA 57.687 30.769 0.00 0.00 0.00 2.41
1955 2033 7.815549 TCTCGCACAAAATAAACTACTCATACA 59.184 33.333 0.00 0.00 0.00 2.29
1956 2034 8.181487 TCTCGCACAAAATAAACTACTCATAC 57.819 34.615 0.00 0.00 0.00 2.39
1957 2035 8.766000 TTCTCGCACAAAATAAACTACTCATA 57.234 30.769 0.00 0.00 0.00 2.15
1958 2036 7.667043 TTCTCGCACAAAATAAACTACTCAT 57.333 32.000 0.00 0.00 0.00 2.90
1959 2037 7.485418 TTTCTCGCACAAAATAAACTACTCA 57.515 32.000 0.00 0.00 0.00 3.41
1960 2038 8.840867 CATTTTCTCGCACAAAATAAACTACTC 58.159 33.333 0.00 0.00 32.74 2.59
1961 2039 8.564574 TCATTTTCTCGCACAAAATAAACTACT 58.435 29.630 0.00 0.00 32.74 2.57
1962 2040 8.722342 TCATTTTCTCGCACAAAATAAACTAC 57.278 30.769 0.00 0.00 32.74 2.73
1963 2041 9.340695 CATCATTTTCTCGCACAAAATAAACTA 57.659 29.630 0.00 0.00 32.74 2.24
1964 2042 8.081633 TCATCATTTTCTCGCACAAAATAAACT 58.918 29.630 0.00 0.00 32.74 2.66
1965 2043 8.226543 TCATCATTTTCTCGCACAAAATAAAC 57.773 30.769 0.00 0.00 32.74 2.01
1966 2044 8.809159 TTCATCATTTTCTCGCACAAAATAAA 57.191 26.923 0.00 0.00 32.74 1.40
1967 2045 8.698854 GTTTCATCATTTTCTCGCACAAAATAA 58.301 29.630 0.00 0.00 32.74 1.40
1968 2046 7.060518 CGTTTCATCATTTTCTCGCACAAAATA 59.939 33.333 0.00 0.00 32.74 1.40
1969 2047 6.129115 CGTTTCATCATTTTCTCGCACAAAAT 60.129 34.615 0.00 0.00 34.42 1.82
1970 2048 5.172951 CGTTTCATCATTTTCTCGCACAAAA 59.827 36.000 0.00 0.00 0.00 2.44
1971 2049 4.674662 CGTTTCATCATTTTCTCGCACAAA 59.325 37.500 0.00 0.00 0.00 2.83
1972 2050 4.024472 TCGTTTCATCATTTTCTCGCACAA 60.024 37.500 0.00 0.00 0.00 3.33
1973 2051 3.496507 TCGTTTCATCATTTTCTCGCACA 59.503 39.130 0.00 0.00 0.00 4.57
1974 2052 4.065423 TCGTTTCATCATTTTCTCGCAC 57.935 40.909 0.00 0.00 0.00 5.34
1975 2053 3.125146 CCTCGTTTCATCATTTTCTCGCA 59.875 43.478 0.00 0.00 0.00 5.10
1976 2054 3.485877 CCCTCGTTTCATCATTTTCTCGC 60.486 47.826 0.00 0.00 0.00 5.03
1977 2055 3.932710 TCCCTCGTTTCATCATTTTCTCG 59.067 43.478 0.00 0.00 0.00 4.04
1978 2056 5.163713 CCTTCCCTCGTTTCATCATTTTCTC 60.164 44.000 0.00 0.00 0.00 2.87
1979 2057 4.702131 CCTTCCCTCGTTTCATCATTTTCT 59.298 41.667 0.00 0.00 0.00 2.52
1980 2058 4.675408 GCCTTCCCTCGTTTCATCATTTTC 60.675 45.833 0.00 0.00 0.00 2.29
1981 2059 3.193479 GCCTTCCCTCGTTTCATCATTTT 59.807 43.478 0.00 0.00 0.00 1.82
1982 2060 2.755103 GCCTTCCCTCGTTTCATCATTT 59.245 45.455 0.00 0.00 0.00 2.32
1983 2061 2.369394 GCCTTCCCTCGTTTCATCATT 58.631 47.619 0.00 0.00 0.00 2.57
1984 2062 1.408822 GGCCTTCCCTCGTTTCATCAT 60.409 52.381 0.00 0.00 0.00 2.45
1985 2063 0.035439 GGCCTTCCCTCGTTTCATCA 60.035 55.000 0.00 0.00 0.00 3.07
1986 2064 2.781911 GGCCTTCCCTCGTTTCATC 58.218 57.895 0.00 0.00 0.00 2.92
1996 2074 6.014584 CCATATTTACAAATAAGGGCCTTCCC 60.015 42.308 24.77 0.00 41.28 3.97
1997 2075 6.780522 TCCATATTTACAAATAAGGGCCTTCC 59.219 38.462 24.77 0.00 39.19 3.46
1998 2076 7.724061 TCTCCATATTTACAAATAAGGGCCTTC 59.276 37.037 24.77 0.00 39.19 3.46
1999 2077 7.591821 TCTCCATATTTACAAATAAGGGCCTT 58.408 34.615 24.44 24.44 39.19 4.35
2000 2078 7.161715 TCTCCATATTTACAAATAAGGGCCT 57.838 36.000 0.00 0.00 39.19 5.19
2001 2079 6.434340 CCTCTCCATATTTACAAATAAGGGCC 59.566 42.308 13.32 0.00 39.19 5.80
2002 2080 6.434340 CCCTCTCCATATTTACAAATAAGGGC 59.566 42.308 13.32 0.00 39.19 5.19
2003 2081 6.948309 CCCCTCTCCATATTTACAAATAAGGG 59.052 42.308 15.60 15.60 40.51 3.95
2004 2082 7.448469 CACCCCTCTCCATATTTACAAATAAGG 59.552 40.741 8.90 8.90 39.74 2.69
2005 2083 7.998964 ACACCCCTCTCCATATTTACAAATAAG 59.001 37.037 0.00 0.00 34.79 1.73
2006 2084 7.777910 CACACCCCTCTCCATATTTACAAATAA 59.222 37.037 0.00 0.00 34.79 1.40
2007 2085 7.287061 CACACCCCTCTCCATATTTACAAATA 58.713 38.462 0.00 0.00 35.52 1.40
2008 2086 6.129179 CACACCCCTCTCCATATTTACAAAT 58.871 40.000 0.00 0.00 0.00 2.32
2009 2087 5.505780 CACACCCCTCTCCATATTTACAAA 58.494 41.667 0.00 0.00 0.00 2.83
2010 2088 4.080015 CCACACCCCTCTCCATATTTACAA 60.080 45.833 0.00 0.00 0.00 2.41
2011 2089 3.458118 CCACACCCCTCTCCATATTTACA 59.542 47.826 0.00 0.00 0.00 2.41
2012 2090 3.181443 CCCACACCCCTCTCCATATTTAC 60.181 52.174 0.00 0.00 0.00 2.01
2013 2091 3.053077 CCCACACCCCTCTCCATATTTA 58.947 50.000 0.00 0.00 0.00 1.40
2014 2092 1.852965 CCCACACCCCTCTCCATATTT 59.147 52.381 0.00 0.00 0.00 1.40
2015 2093 1.275002 ACCCACACCCCTCTCCATATT 60.275 52.381 0.00 0.00 0.00 1.28
2016 2094 0.346932 ACCCACACCCCTCTCCATAT 59.653 55.000 0.00 0.00 0.00 1.78
2017 2095 1.020462 TACCCACACCCCTCTCCATA 58.980 55.000 0.00 0.00 0.00 2.74
2018 2096 0.346932 ATACCCACACCCCTCTCCAT 59.653 55.000 0.00 0.00 0.00 3.41
2019 2097 0.326238 GATACCCACACCCCTCTCCA 60.326 60.000 0.00 0.00 0.00 3.86
2020 2098 0.031010 AGATACCCACACCCCTCTCC 60.031 60.000 0.00 0.00 0.00 3.71
2021 2099 1.880941 AAGATACCCACACCCCTCTC 58.119 55.000 0.00 0.00 0.00 3.20
2022 2100 2.361085 AAAGATACCCACACCCCTCT 57.639 50.000 0.00 0.00 0.00 3.69
2023 2101 3.264964 TGTAAAAGATACCCACACCCCTC 59.735 47.826 0.00 0.00 0.00 4.30
2024 2102 3.261962 TGTAAAAGATACCCACACCCCT 58.738 45.455 0.00 0.00 0.00 4.79
2025 2103 3.724732 TGTAAAAGATACCCACACCCC 57.275 47.619 0.00 0.00 0.00 4.95
2026 2104 6.599356 ATTTTGTAAAAGATACCCACACCC 57.401 37.500 0.00 0.00 0.00 4.61
2027 2105 7.438564 ACAATTTTGTAAAAGATACCCACACC 58.561 34.615 0.00 0.00 40.16 4.16
2028 2106 8.138712 TGACAATTTTGTAAAAGATACCCACAC 58.861 33.333 0.00 0.00 42.43 3.82
2029 2107 8.239038 TGACAATTTTGTAAAAGATACCCACA 57.761 30.769 0.00 0.00 42.43 4.17
2045 2123 9.860898 GGATAGAAAGCAAACTATGACAATTTT 57.139 29.630 0.00 0.00 30.74 1.82
2046 2124 8.184192 CGGATAGAAAGCAAACTATGACAATTT 58.816 33.333 0.00 0.00 30.74 1.82
2047 2125 7.336931 ACGGATAGAAAGCAAACTATGACAATT 59.663 33.333 0.00 0.00 30.74 2.32
2048 2126 6.823689 ACGGATAGAAAGCAAACTATGACAAT 59.176 34.615 0.00 0.00 30.74 2.71
2049 2127 6.092122 CACGGATAGAAAGCAAACTATGACAA 59.908 38.462 0.00 0.00 30.74 3.18
2050 2128 5.580691 CACGGATAGAAAGCAAACTATGACA 59.419 40.000 0.00 0.00 30.74 3.58
2051 2129 5.810587 TCACGGATAGAAAGCAAACTATGAC 59.189 40.000 0.00 0.00 30.74 3.06
2052 2130 5.972935 TCACGGATAGAAAGCAAACTATGA 58.027 37.500 0.00 0.00 30.74 2.15
2053 2131 6.042777 TCTCACGGATAGAAAGCAAACTATG 58.957 40.000 0.00 0.00 30.74 2.23
2054 2132 6.222038 TCTCACGGATAGAAAGCAAACTAT 57.778 37.500 0.00 0.00 32.87 2.12
2055 2133 5.654603 TCTCACGGATAGAAAGCAAACTA 57.345 39.130 0.00 0.00 0.00 2.24
2056 2134 4.537135 TCTCACGGATAGAAAGCAAACT 57.463 40.909 0.00 0.00 0.00 2.66
2057 2135 8.589335 TTATATCTCACGGATAGAAAGCAAAC 57.411 34.615 0.00 0.00 39.89 2.93
2058 2136 9.778741 ATTTATATCTCACGGATAGAAAGCAAA 57.221 29.630 9.96 0.00 45.34 3.68
2059 2137 9.424319 GATTTATATCTCACGGATAGAAAGCAA 57.576 33.333 12.77 0.00 45.73 3.91
2060 2138 7.755373 CGATTTATATCTCACGGATAGAAAGCA 59.245 37.037 15.85 0.00 46.25 3.91
2061 2139 7.221067 CCGATTTATATCTCACGGATAGAAAGC 59.779 40.741 0.00 9.48 45.34 3.51
2062 2140 8.459635 TCCGATTTATATCTCACGGATAGAAAG 58.540 37.037 0.00 1.05 45.34 2.62
2063 2141 8.344446 TCCGATTTATATCTCACGGATAGAAA 57.656 34.615 0.00 7.55 45.83 2.52
2064 2142 7.933215 TCCGATTTATATCTCACGGATAGAA 57.067 36.000 0.00 0.00 43.30 2.10
2069 2147 4.067192 TCGTCCGATTTATATCTCACGGA 58.933 43.478 0.00 0.00 45.36 4.69
2070 2148 4.414999 TCGTCCGATTTATATCTCACGG 57.585 45.455 0.00 0.00 41.39 4.94
2071 2149 5.870444 AGATCGTCCGATTTATATCTCACG 58.130 41.667 3.41 7.16 36.00 4.35
2075 2153 9.900710 GCAATATAGATCGTCCGATTTATATCT 57.099 33.333 22.47 14.70 40.71 1.98
2076 2154 9.678941 TGCAATATAGATCGTCCGATTTATATC 57.321 33.333 22.47 15.75 40.71 1.63
2077 2155 9.684448 CTGCAATATAGATCGTCCGATTTATAT 57.316 33.333 19.17 19.17 42.05 0.86
2078 2156 8.135529 CCTGCAATATAGATCGTCCGATTTATA 58.864 37.037 17.12 17.12 38.04 0.98
2079 2157 6.980978 CCTGCAATATAGATCGTCCGATTTAT 59.019 38.462 14.59 14.59 36.38 1.40
2080 2158 6.152154 TCCTGCAATATAGATCGTCCGATTTA 59.848 38.462 3.41 3.13 34.60 1.40
2081 2159 5.047306 TCCTGCAATATAGATCGTCCGATTT 60.047 40.000 3.41 0.76 34.60 2.17
2082 2160 4.462834 TCCTGCAATATAGATCGTCCGATT 59.537 41.667 3.41 0.00 34.60 3.34
2083 2161 4.017126 TCCTGCAATATAGATCGTCCGAT 58.983 43.478 1.12 1.12 37.59 4.18
2084 2162 3.418047 TCCTGCAATATAGATCGTCCGA 58.582 45.455 0.00 0.00 0.00 4.55
2085 2163 3.850122 TCCTGCAATATAGATCGTCCG 57.150 47.619 0.00 0.00 0.00 4.79
2086 2164 4.437239 CCATCCTGCAATATAGATCGTCC 58.563 47.826 0.00 0.00 0.00 4.79
2087 2165 3.868077 GCCATCCTGCAATATAGATCGTC 59.132 47.826 0.00 0.00 0.00 4.20
2088 2166 3.261643 TGCCATCCTGCAATATAGATCGT 59.738 43.478 0.00 0.00 38.56 3.73
2089 2167 3.865446 TGCCATCCTGCAATATAGATCG 58.135 45.455 0.00 0.00 38.56 3.69
2090 2168 4.874966 GTCTGCCATCCTGCAATATAGATC 59.125 45.833 0.00 0.00 41.51 2.75
2091 2169 4.287845 TGTCTGCCATCCTGCAATATAGAT 59.712 41.667 0.00 0.00 41.51 1.98
2092 2170 3.647590 TGTCTGCCATCCTGCAATATAGA 59.352 43.478 0.00 0.00 41.51 1.98
2093 2171 3.750130 GTGTCTGCCATCCTGCAATATAG 59.250 47.826 0.00 0.00 41.51 1.31
2094 2172 3.136260 TGTGTCTGCCATCCTGCAATATA 59.864 43.478 0.00 0.00 41.51 0.86
2095 2173 2.092267 TGTGTCTGCCATCCTGCAATAT 60.092 45.455 0.00 0.00 41.51 1.28
2096 2174 1.281577 TGTGTCTGCCATCCTGCAATA 59.718 47.619 0.00 0.00 41.51 1.90
2097 2175 0.038599 TGTGTCTGCCATCCTGCAAT 59.961 50.000 0.00 0.00 41.51 3.56
2098 2176 0.890542 GTGTGTCTGCCATCCTGCAA 60.891 55.000 0.00 0.00 41.51 4.08
2099 2177 1.302752 GTGTGTCTGCCATCCTGCA 60.303 57.895 0.00 0.00 39.37 4.41
2100 2178 2.042831 GGTGTGTCTGCCATCCTGC 61.043 63.158 0.00 0.00 0.00 4.85
2101 2179 0.034767 ATGGTGTGTCTGCCATCCTG 60.035 55.000 0.00 0.00 41.24 3.86
2102 2180 2.391226 ATGGTGTGTCTGCCATCCT 58.609 52.632 0.00 0.00 41.24 3.24
2106 2184 0.691904 TGATGATGGTGTGTCTGCCA 59.308 50.000 0.00 0.00 39.33 4.92
2107 2185 1.089920 GTGATGATGGTGTGTCTGCC 58.910 55.000 0.00 0.00 0.00 4.85
2108 2186 1.089920 GGTGATGATGGTGTGTCTGC 58.910 55.000 0.00 0.00 0.00 4.26
2109 2187 2.477845 TGGTGATGATGGTGTGTCTG 57.522 50.000 0.00 0.00 0.00 3.51
2110 2188 2.373169 AGTTGGTGATGATGGTGTGTCT 59.627 45.455 0.00 0.00 0.00 3.41
2111 2189 2.744202 GAGTTGGTGATGATGGTGTGTC 59.256 50.000 0.00 0.00 0.00 3.67
2112 2190 2.553028 GGAGTTGGTGATGATGGTGTGT 60.553 50.000 0.00 0.00 0.00 3.72
2113 2191 2.086869 GGAGTTGGTGATGATGGTGTG 58.913 52.381 0.00 0.00 0.00 3.82
2114 2192 1.339055 CGGAGTTGGTGATGATGGTGT 60.339 52.381 0.00 0.00 0.00 4.16
2115 2193 1.339055 ACGGAGTTGGTGATGATGGTG 60.339 52.381 0.00 0.00 37.78 4.17
2116 2194 0.984230 ACGGAGTTGGTGATGATGGT 59.016 50.000 0.00 0.00 37.78 3.55
2117 2195 3.861341 ACGGAGTTGGTGATGATGG 57.139 52.632 0.00 0.00 37.78 3.51
2153 2231 9.969001 GTCCTGGAGTATAATCTCTACTCTTAT 57.031 37.037 0.00 0.00 43.00 1.73
2154 2232 8.095792 CGTCCTGGAGTATAATCTCTACTCTTA 58.904 40.741 0.00 1.17 43.00 2.10
2155 2233 6.938030 CGTCCTGGAGTATAATCTCTACTCTT 59.062 42.308 0.00 0.00 43.00 2.85
2156 2234 6.469410 CGTCCTGGAGTATAATCTCTACTCT 58.531 44.000 0.00 0.00 43.00 3.24
2157 2235 5.644636 CCGTCCTGGAGTATAATCTCTACTC 59.355 48.000 0.00 2.57 42.81 2.59
2158 2236 5.310068 TCCGTCCTGGAGTATAATCTCTACT 59.690 44.000 0.00 0.00 43.74 2.57
2159 2237 5.558818 TCCGTCCTGGAGTATAATCTCTAC 58.441 45.833 0.00 0.00 43.74 2.59
2160 2238 5.837770 TCCGTCCTGGAGTATAATCTCTA 57.162 43.478 0.00 0.00 43.74 2.43
2161 2239 4.726035 TCCGTCCTGGAGTATAATCTCT 57.274 45.455 0.00 0.00 43.74 3.10
2173 2251 2.443016 CCTCTCCCTCCGTCCTGG 60.443 72.222 0.00 0.00 40.09 4.45
2174 2252 2.443016 CCCTCTCCCTCCGTCCTG 60.443 72.222 0.00 0.00 0.00 3.86
2175 2253 2.617538 TCCCTCTCCCTCCGTCCT 60.618 66.667 0.00 0.00 0.00 3.85
2176 2254 1.643475 TACTCCCTCTCCCTCCGTCC 61.643 65.000 0.00 0.00 0.00 4.79
2177 2255 0.258194 TTACTCCCTCTCCCTCCGTC 59.742 60.000 0.00 0.00 0.00 4.79
2178 2256 0.259356 CTTACTCCCTCTCCCTCCGT 59.741 60.000 0.00 0.00 0.00 4.69
2179 2257 0.551879 TCTTACTCCCTCTCCCTCCG 59.448 60.000 0.00 0.00 0.00 4.63
2180 2258 2.023791 ACTTCTTACTCCCTCTCCCTCC 60.024 54.545 0.00 0.00 0.00 4.30
2181 2259 3.391799 ACTTCTTACTCCCTCTCCCTC 57.608 52.381 0.00 0.00 0.00 4.30
2182 2260 3.859859 ACTACTTCTTACTCCCTCTCCCT 59.140 47.826 0.00 0.00 0.00 4.20
2183 2261 4.254039 ACTACTTCTTACTCCCTCTCCC 57.746 50.000 0.00 0.00 0.00 4.30
2184 2262 5.593909 GGTTACTACTTCTTACTCCCTCTCC 59.406 48.000 0.00 0.00 0.00 3.71
2185 2263 6.186234 TGGTTACTACTTCTTACTCCCTCTC 58.814 44.000 0.00 0.00 0.00 3.20
2186 2264 6.150034 TGGTTACTACTTCTTACTCCCTCT 57.850 41.667 0.00 0.00 0.00 3.69
2187 2265 6.847421 TTGGTTACTACTTCTTACTCCCTC 57.153 41.667 0.00 0.00 0.00 4.30
2188 2266 6.383436 GGATTGGTTACTACTTCTTACTCCCT 59.617 42.308 0.00 0.00 0.00 4.20
2189 2267 6.155737 TGGATTGGTTACTACTTCTTACTCCC 59.844 42.308 0.00 0.00 0.00 4.30
2190 2268 7.179076 TGGATTGGTTACTACTTCTTACTCC 57.821 40.000 0.00 0.00 0.00 3.85
2191 2269 9.668497 AAATGGATTGGTTACTACTTCTTACTC 57.332 33.333 0.00 0.00 0.00 2.59
2192 2270 9.668497 GAAATGGATTGGTTACTACTTCTTACT 57.332 33.333 0.00 0.00 0.00 2.24
2193 2271 8.890718 GGAAATGGATTGGTTACTACTTCTTAC 58.109 37.037 0.00 0.00 0.00 2.34
2194 2272 8.607713 TGGAAATGGATTGGTTACTACTTCTTA 58.392 33.333 0.00 0.00 0.00 2.10
2195 2273 7.466804 TGGAAATGGATTGGTTACTACTTCTT 58.533 34.615 0.00 0.00 0.00 2.52
2196 2274 7.027874 TGGAAATGGATTGGTTACTACTTCT 57.972 36.000 0.00 0.00 0.00 2.85
2197 2275 7.881775 ATGGAAATGGATTGGTTACTACTTC 57.118 36.000 0.00 0.00 0.00 3.01
2198 2276 8.664669 AAATGGAAATGGATTGGTTACTACTT 57.335 30.769 0.00 0.00 0.00 2.24
2199 2277 8.664669 AAAATGGAAATGGATTGGTTACTACT 57.335 30.769 0.00 0.00 0.00 2.57
2201 2279 9.983024 TCTAAAATGGAAATGGATTGGTTACTA 57.017 29.630 0.00 0.00 0.00 1.82
2202 2280 8.893563 TCTAAAATGGAAATGGATTGGTTACT 57.106 30.769 0.00 0.00 0.00 2.24
2203 2281 8.749354 ACTCTAAAATGGAAATGGATTGGTTAC 58.251 33.333 0.00 0.00 0.00 2.50
2204 2282 8.893563 ACTCTAAAATGGAAATGGATTGGTTA 57.106 30.769 0.00 0.00 0.00 2.85
2205 2283 7.797121 ACTCTAAAATGGAAATGGATTGGTT 57.203 32.000 0.00 0.00 0.00 3.67
2206 2284 7.797121 AACTCTAAAATGGAAATGGATTGGT 57.203 32.000 0.00 0.00 0.00 3.67
2207 2285 8.748412 TGTAACTCTAAAATGGAAATGGATTGG 58.252 33.333 0.00 0.00 0.00 3.16
2353 2431 6.449830 AAACCTACTGTATTCCAACTTCCT 57.550 37.500 0.00 0.00 0.00 3.36
2354 2432 7.662669 TGTTAAACCTACTGTATTCCAACTTCC 59.337 37.037 0.00 0.00 0.00 3.46
2393 2471 9.871238 TTAAGGTACTGTAATGAACTCATTCTC 57.129 33.333 8.19 4.84 42.05 2.87
2436 2514 6.546403 ACTCTCATGAGCTCCGTTAGTATAAA 59.454 38.462 18.36 0.00 43.85 1.40
2482 2562 9.594478 CTTTACCCAAAAACTTGAAAACTACAT 57.406 29.630 0.00 0.00 0.00 2.29
2560 2640 1.080638 ATTACCTTGGGGTGCCTTGA 58.919 50.000 0.00 0.00 46.75 3.02
2684 2768 5.220835 CGCTCCAAGCAAAACACATATCATA 60.221 40.000 0.00 0.00 42.58 2.15
2760 2844 6.812160 GTGTATCTCTTTCGAAAGGTGTGTAT 59.188 38.462 31.82 19.35 36.67 2.29
2772 2856 5.281727 TCCGATTCATGTGTATCTCTTTCG 58.718 41.667 0.00 0.00 0.00 3.46
2775 2859 9.784531 ATAAATTCCGATTCATGTGTATCTCTT 57.215 29.630 0.00 0.00 0.00 2.85


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.