Multiple sequence alignment - TraesCS2B01G626900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G626900 chr2B 100.000 4677 0 0 1 4677 798826875 798822199 0.000000e+00 8637
1 TraesCS2B01G626900 chr2B 81.754 422 39 26 4040 4431 798573793 798574206 7.550000e-83 318
2 TraesCS2B01G626900 chr2B 93.333 210 10 3 4471 4677 798574210 798574418 1.630000e-79 307
3 TraesCS2B01G626900 chr2B 94.030 67 3 1 3909 3974 798572973 798573039 2.980000e-17 100
4 TraesCS2B01G626900 chr2D 93.615 3602 198 13 142 3722 639691588 639687998 0.000000e+00 5349
5 TraesCS2B01G626900 chr2D 91.667 312 24 2 3822 4131 639687723 639687412 9.300000e-117 431
6 TraesCS2B01G626900 chr2D 95.588 136 6 0 1 136 639691790 639691655 7.880000e-53 219
7 TraesCS2B01G626900 chr2D 95.200 125 6 0 4553 4677 639687221 639687097 1.030000e-46 198
8 TraesCS2B01G626900 chr2A 90.872 2180 168 15 1587 3755 765174519 765172360 0.000000e+00 2894
9 TraesCS2B01G626900 chr2A 90.801 1424 121 8 143 1559 765175935 765174515 0.000000e+00 1895
10 TraesCS2B01G626900 chr2A 78.552 732 133 19 496 1219 605171283 605170568 1.190000e-125 460
11 TraesCS2B01G626900 chr2A 89.972 359 21 4 4334 4677 765169325 765168967 2.570000e-122 449
12 TraesCS2B01G626900 chr2A 86.420 162 20 2 3848 4008 765169914 765169754 4.810000e-40 176
13 TraesCS2B01G626900 chr6D 79.516 3427 546 99 396 3718 7284787 7281413 0.000000e+00 2296
14 TraesCS2B01G626900 chr6D 86.825 463 49 9 1630 2082 7290582 7290122 1.500000e-139 507
15 TraesCS2B01G626900 chrUn 80.215 2047 321 60 1631 3633 76214442 76216448 0.000000e+00 1459
16 TraesCS2B01G626900 chrUn 80.215 2047 321 60 1631 3633 300461343 300463349 0.000000e+00 1459
17 TraesCS2B01G626900 chrUn 84.524 588 86 4 396 982 76213199 76213782 1.130000e-160 577
18 TraesCS2B01G626900 chrUn 84.524 588 86 4 396 982 300460100 300460683 1.130000e-160 577
19 TraesCS2B01G626900 chr6A 79.282 1979 322 51 1689 3636 6975218 6973297 0.000000e+00 1303
20 TraesCS2B01G626900 chr6A 81.517 1569 220 43 1689 3226 7006226 7004697 0.000000e+00 1227
21 TraesCS2B01G626900 chr6A 74.494 741 155 22 493 1218 7009413 7008692 1.650000e-74 291
22 TraesCS2B01G626900 chr6A 78.981 314 59 7 1733 2041 24172838 24172527 1.710000e-49 207
23 TraesCS2B01G626900 chr7A 78.154 975 186 20 1696 2658 18980227 18981186 3.120000e-166 595
24 TraesCS2B01G626900 chr6B 78.554 816 155 13 1733 2540 42599234 42598431 1.930000e-143 520
25 TraesCS2B01G626900 chr3D 78.078 739 136 19 490 1218 597477640 597478362 1.190000e-120 444
26 TraesCS2B01G626900 chr3D 77.405 686 139 12 534 1215 597294075 597294748 1.220000e-105 394
27 TraesCS2B01G626900 chr7B 77.432 771 149 19 497 1257 332128885 332129640 2.000000e-118 436
28 TraesCS2B01G626900 chr3B 76.747 787 160 22 441 1218 804130104 804130876 7.240000e-113 418
29 TraesCS2B01G626900 chr7D 76.463 769 160 16 497 1257 188289074 188289829 9.430000e-107 398


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G626900 chr2B 798822199 798826875 4676 True 8637.000000 8637 100.000000 1 4677 1 chr2B.!!$R1 4676
1 TraesCS2B01G626900 chr2B 798572973 798574418 1445 False 241.666667 318 89.705667 3909 4677 3 chr2B.!!$F1 768
2 TraesCS2B01G626900 chr2D 639687097 639691790 4693 True 1549.250000 5349 94.017500 1 4677 4 chr2D.!!$R1 4676
3 TraesCS2B01G626900 chr2A 765168967 765175935 6968 True 1353.500000 2894 89.516250 143 4677 4 chr2A.!!$R2 4534
4 TraesCS2B01G626900 chr2A 605170568 605171283 715 True 460.000000 460 78.552000 496 1219 1 chr2A.!!$R1 723
5 TraesCS2B01G626900 chr6D 7281413 7284787 3374 True 2296.000000 2296 79.516000 396 3718 1 chr6D.!!$R1 3322
6 TraesCS2B01G626900 chrUn 76213199 76216448 3249 False 1018.000000 1459 82.369500 396 3633 2 chrUn.!!$F1 3237
7 TraesCS2B01G626900 chrUn 300460100 300463349 3249 False 1018.000000 1459 82.369500 396 3633 2 chrUn.!!$F2 3237
8 TraesCS2B01G626900 chr6A 6973297 6975218 1921 True 1303.000000 1303 79.282000 1689 3636 1 chr6A.!!$R1 1947
9 TraesCS2B01G626900 chr6A 7004697 7009413 4716 True 759.000000 1227 78.005500 493 3226 2 chr6A.!!$R3 2733
10 TraesCS2B01G626900 chr7A 18980227 18981186 959 False 595.000000 595 78.154000 1696 2658 1 chr7A.!!$F1 962
11 TraesCS2B01G626900 chr6B 42598431 42599234 803 True 520.000000 520 78.554000 1733 2540 1 chr6B.!!$R1 807
12 TraesCS2B01G626900 chr3D 597477640 597478362 722 False 444.000000 444 78.078000 490 1218 1 chr3D.!!$F2 728
13 TraesCS2B01G626900 chr3D 597294075 597294748 673 False 394.000000 394 77.405000 534 1215 1 chr3D.!!$F1 681
14 TraesCS2B01G626900 chr7B 332128885 332129640 755 False 436.000000 436 77.432000 497 1257 1 chr7B.!!$F1 760
15 TraesCS2B01G626900 chr3B 804130104 804130876 772 False 418.000000 418 76.747000 441 1218 1 chr3B.!!$F1 777
16 TraesCS2B01G626900 chr7D 188289074 188289829 755 False 398.000000 398 76.463000 497 1257 1 chr7D.!!$F1 760

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
67 68 1.043816 ATCTCGGGCTATGTCTGGTG 58.956 55.000 0.0 0.0 0.00 4.17 F
649 713 1.600957 CTTGGCAGTATGAAGGATGCG 59.399 52.381 0.0 0.0 39.69 4.73 F
1241 1319 1.927174 ACACGCATCTATTGACGCTTC 59.073 47.619 0.0 0.0 0.00 3.86 F
2684 4874 0.176680 CCACAGGAGAATGGACCTCG 59.823 60.000 0.0 0.0 38.34 4.63 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1364 1449 6.354794 TCTCTTTTCGAGACCAAATTAGGA 57.645 37.5 0.00 0.0 43.72 2.94 R
2644 4834 0.865769 TCTCGGCAAAAAGAACTCGC 59.134 50.0 0.00 0.0 0.00 5.03 R
2992 5209 0.102120 CCAAGTAGCCGCAGAGAGAG 59.898 60.0 0.00 0.0 0.00 3.20 R
3696 5936 0.105964 AACTTGCACGTACCAGCTGA 59.894 50.0 17.39 0.0 0.00 4.26 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
67 68 1.043816 ATCTCGGGCTATGTCTGGTG 58.956 55.000 0.00 0.00 0.00 4.17
84 85 2.125512 GGATGTCGGCTTCAGCGT 60.126 61.111 5.21 0.00 43.26 5.07
123 124 4.029520 TCTCTTCTTCTGGATCTCAAGGG 58.970 47.826 0.00 0.00 0.00 3.95
170 232 5.111989 TCTTCCGTTTAGAGCAATCATCAG 58.888 41.667 0.00 0.00 0.00 2.90
175 237 4.330894 CGTTTAGAGCAATCATCAGAAGCA 59.669 41.667 0.00 0.00 33.01 3.91
195 257 3.712187 CAAAGGCTTCTCGATCTACTCC 58.288 50.000 0.00 0.00 0.00 3.85
203 265 5.180868 GCTTCTCGATCTACTCCGGTAAATA 59.819 44.000 0.00 0.00 0.00 1.40
299 361 4.024048 GGGTGAACAGTCAAAGTACATGTG 60.024 45.833 9.11 0.00 34.87 3.21
302 364 6.426937 GGTGAACAGTCAAAGTACATGTGTAT 59.573 38.462 9.11 0.00 34.87 2.29
310 372 9.587772 AGTCAAAGTACATGTGTATGATTAGTC 57.412 33.333 9.11 0.00 37.73 2.59
385 447 7.819415 TCTGGAATTTCTGACCTATATAATGCG 59.181 37.037 0.00 0.00 0.00 4.73
466 529 5.104900 GGTTCCTCTCAAGCATAGGTAGAAA 60.105 44.000 0.00 0.00 0.00 2.52
649 713 1.600957 CTTGGCAGTATGAAGGATGCG 59.399 52.381 0.00 0.00 39.69 4.73
751 815 4.629092 ACATCGAGGACATCATTGATGAG 58.371 43.478 28.81 15.41 46.17 2.90
1241 1319 1.927174 ACACGCATCTATTGACGCTTC 59.073 47.619 0.00 0.00 0.00 3.86
1516 2920 8.154649 ACAATCTGTACGAGAAAATCAGTTTT 57.845 30.769 0.00 0.00 40.13 2.43
1928 4106 3.675698 CCTTAGCAACGAAGACTCAAGAC 59.324 47.826 0.00 0.00 0.00 3.01
2096 4277 4.168101 AGAAGAGGAGTGGGAACATGTAA 58.832 43.478 0.00 0.00 46.14 2.41
2361 4545 4.583871 CTTGTCAATAGGAGCCTTGTTCT 58.416 43.478 0.00 0.00 0.00 3.01
2420 4604 9.524106 CAAAATGCAAAGTACATGATATGATGT 57.476 29.630 12.58 12.58 39.87 3.06
2499 4683 3.198635 TCAGAAGCCATTACAGAAGAGGG 59.801 47.826 0.00 0.00 0.00 4.30
2644 4834 5.590259 TCCTCTTTCAAAGTTCAAGTTCCTG 59.410 40.000 0.00 0.00 0.00 3.86
2658 4848 2.033424 AGTTCCTGCGAGTTCTTTTTGC 59.967 45.455 0.00 0.00 0.00 3.68
2673 4863 0.250295 TTTGCCGAGAACCACAGGAG 60.250 55.000 0.00 0.00 0.00 3.69
2684 4874 0.176680 CCACAGGAGAATGGACCTCG 59.823 60.000 0.00 0.00 38.34 4.63
2727 4917 9.579768 GTATCAGCTAAGATATGTAATGACTGG 57.420 37.037 0.00 0.00 33.42 4.00
2728 4918 6.459066 TCAGCTAAGATATGTAATGACTGGC 58.541 40.000 0.00 0.00 0.00 4.85
2730 4920 4.092091 GCTAAGATATGTAATGACTGGCGC 59.908 45.833 0.00 0.00 0.00 6.53
2732 4922 2.076863 GATATGTAATGACTGGCGCCC 58.923 52.381 26.77 9.46 0.00 6.13
2733 4923 1.128200 TATGTAATGACTGGCGCCCT 58.872 50.000 26.77 9.11 0.00 5.19
2736 4926 0.392461 GTAATGACTGGCGCCCTTGA 60.392 55.000 26.77 4.68 0.00 3.02
2738 4928 3.958147 ATGACTGGCGCCCTTGACG 62.958 63.158 26.77 7.68 0.00 4.35
2900 5117 3.053693 TGGGATCGGAAACATGAAATCCT 60.054 43.478 0.00 0.00 34.42 3.24
2937 5154 8.993404 AGGGGATTTCATTTGAATTTTGAAAA 57.007 26.923 0.00 0.00 41.26 2.29
2992 5209 7.602265 GGAGAGCTTACCAATATGAGAAATCTC 59.398 40.741 3.43 3.43 43.15 2.75
3005 5222 1.408702 GAAATCTCTCTCTCTGCGGCT 59.591 52.381 0.00 0.00 0.00 5.52
3023 5240 2.158885 GGCTACTTGGAAGATCAGGACC 60.159 54.545 0.00 0.00 0.00 4.46
3098 5315 3.304794 GCTCGAGTCCCTGTACATATGTC 60.305 52.174 12.68 5.06 0.00 3.06
3133 5353 0.613260 TGGATGGTTTGTCTCCTCCG 59.387 55.000 0.00 0.00 0.00 4.63
3169 5392 1.228124 CCACGCCAGAGGTTTTGGA 60.228 57.895 0.00 0.00 37.96 3.53
3232 5455 4.540099 AGGGAACTTCATAACCTCCATGAA 59.460 41.667 0.00 0.00 39.48 2.57
3285 5508 1.202830 TGGTGTTGGTATTCTTGCGGT 60.203 47.619 0.00 0.00 0.00 5.68
3302 5525 3.319198 TGTTGCCCTCCCTCGTCC 61.319 66.667 0.00 0.00 0.00 4.79
3388 5611 5.964958 TCCCTGTTCTAAAGCATTTTGAG 57.035 39.130 0.00 0.00 40.62 3.02
3392 5615 6.405176 CCCTGTTCTAAAGCATTTTGAGATCC 60.405 42.308 0.00 0.00 40.62 3.36
3469 5692 3.076032 AGAGGCTGGGGTTAAGTTTCAAT 59.924 43.478 0.00 0.00 0.00 2.57
3509 5738 4.148825 GACCAGCCGGCATCGAGT 62.149 66.667 31.54 17.67 39.00 4.18
3536 5765 1.895798 CTGCACTGGAAGAGGTGTCTA 59.104 52.381 0.00 0.00 37.43 2.59
3539 5768 1.887198 CACTGGAAGAGGTGTCTACGT 59.113 52.381 0.00 0.00 37.43 3.57
3545 5774 1.380524 AGAGGTGTCTACGTGGATCG 58.619 55.000 4.45 0.00 46.00 3.69
3556 5785 1.805945 GTGGATCGTGTGCCTCGAC 60.806 63.158 2.28 0.00 40.07 4.20
3637 5866 1.354337 CCGACAATCCTCGCACTGTG 61.354 60.000 2.76 2.76 31.98 3.66
3642 5871 1.480212 AATCCTCGCACTGTGGTCCA 61.480 55.000 10.21 0.00 32.86 4.02
3650 5879 1.335872 GCACTGTGGTCCATTTTTCGG 60.336 52.381 10.21 0.00 0.00 4.30
3655 5884 4.457949 ACTGTGGTCCATTTTTCGGAATAC 59.542 41.667 0.00 0.00 33.29 1.89
3657 5886 3.129813 GTGGTCCATTTTTCGGAATACCC 59.870 47.826 0.00 0.00 33.29 3.69
3696 5936 2.533266 TTTCTGCTTCGACTCTGCTT 57.467 45.000 0.00 0.00 0.00 3.91
3697 5937 2.071688 TTCTGCTTCGACTCTGCTTC 57.928 50.000 0.00 0.00 0.00 3.86
3722 5962 0.589708 GTACGTGCAAGTTTCCACCC 59.410 55.000 11.38 0.00 0.00 4.61
3744 5998 4.222336 CCTCTCTCTCTCTCTCTCTCTCT 58.778 52.174 0.00 0.00 0.00 3.10
3745 5999 4.280677 CCTCTCTCTCTCTCTCTCTCTCTC 59.719 54.167 0.00 0.00 0.00 3.20
3746 6000 4.871822 TCTCTCTCTCTCTCTCTCTCTCA 58.128 47.826 0.00 0.00 0.00 3.27
3747 6001 4.892345 TCTCTCTCTCTCTCTCTCTCTCAG 59.108 50.000 0.00 0.00 0.00 3.35
3748 6002 4.614475 TCTCTCTCTCTCTCTCTCTCAGT 58.386 47.826 0.00 0.00 0.00 3.41
3749 6003 4.646945 TCTCTCTCTCTCTCTCTCTCAGTC 59.353 50.000 0.00 0.00 0.00 3.51
3750 6004 4.614475 TCTCTCTCTCTCTCTCTCAGTCT 58.386 47.826 0.00 0.00 0.00 3.24
3751 6005 4.646945 TCTCTCTCTCTCTCTCTCAGTCTC 59.353 50.000 0.00 0.00 0.00 3.36
3752 6006 4.614475 TCTCTCTCTCTCTCTCAGTCTCT 58.386 47.826 0.00 0.00 0.00 3.10
3753 6007 4.646945 TCTCTCTCTCTCTCTCAGTCTCTC 59.353 50.000 0.00 0.00 0.00 3.20
3754 6008 4.614475 TCTCTCTCTCTCTCAGTCTCTCT 58.386 47.826 0.00 0.00 0.00 3.10
3755 6009 4.646945 TCTCTCTCTCTCTCAGTCTCTCTC 59.353 50.000 0.00 0.00 0.00 3.20
3756 6010 4.352893 TCTCTCTCTCTCAGTCTCTCTCA 58.647 47.826 0.00 0.00 0.00 3.27
3757 6011 4.403752 TCTCTCTCTCTCAGTCTCTCTCAG 59.596 50.000 0.00 0.00 0.00 3.35
3758 6012 4.096681 TCTCTCTCTCAGTCTCTCTCAGT 58.903 47.826 0.00 0.00 0.00 3.41
3759 6013 4.160439 TCTCTCTCTCAGTCTCTCTCAGTC 59.840 50.000 0.00 0.00 0.00 3.51
3760 6014 4.096681 TCTCTCTCAGTCTCTCTCAGTCT 58.903 47.826 0.00 0.00 0.00 3.24
3761 6015 4.160439 TCTCTCTCAGTCTCTCTCAGTCTC 59.840 50.000 0.00 0.00 0.00 3.36
3762 6016 4.096681 TCTCTCAGTCTCTCTCAGTCTCT 58.903 47.826 0.00 0.00 0.00 3.10
3763 6017 4.160439 TCTCTCAGTCTCTCTCAGTCTCTC 59.840 50.000 0.00 0.00 0.00 3.20
3764 6018 4.096681 TCTCAGTCTCTCTCAGTCTCTCT 58.903 47.826 0.00 0.00 0.00 3.10
3765 6019 4.160439 TCTCAGTCTCTCTCAGTCTCTCTC 59.840 50.000 0.00 0.00 0.00 3.20
3766 6020 4.096681 TCAGTCTCTCTCAGTCTCTCTCT 58.903 47.826 0.00 0.00 0.00 3.10
3767 6021 4.160439 TCAGTCTCTCTCAGTCTCTCTCTC 59.840 50.000 0.00 0.00 0.00 3.20
3768 6022 4.161189 CAGTCTCTCTCAGTCTCTCTCTCT 59.839 50.000 0.00 0.00 0.00 3.10
3769 6023 4.404073 AGTCTCTCTCAGTCTCTCTCTCTC 59.596 50.000 0.00 0.00 0.00 3.20
3770 6024 4.404073 GTCTCTCTCAGTCTCTCTCTCTCT 59.596 50.000 0.00 0.00 0.00 3.10
3771 6025 4.646945 TCTCTCTCAGTCTCTCTCTCTCTC 59.353 50.000 0.00 0.00 0.00 3.20
3772 6026 4.614475 TCTCTCAGTCTCTCTCTCTCTCT 58.386 47.826 0.00 0.00 0.00 3.10
3773 6027 4.646945 TCTCTCAGTCTCTCTCTCTCTCTC 59.353 50.000 0.00 0.00 0.00 3.20
3774 6028 4.614475 TCTCAGTCTCTCTCTCTCTCTCT 58.386 47.826 0.00 0.00 0.00 3.10
3775 6029 4.646945 TCTCAGTCTCTCTCTCTCTCTCTC 59.353 50.000 0.00 0.00 0.00 3.20
3776 6030 4.614475 TCAGTCTCTCTCTCTCTCTCTCT 58.386 47.826 0.00 0.00 0.00 3.10
3777 6031 4.646945 TCAGTCTCTCTCTCTCTCTCTCTC 59.353 50.000 0.00 0.00 0.00 3.20
3778 6032 4.648762 CAGTCTCTCTCTCTCTCTCTCTCT 59.351 50.000 0.00 0.00 0.00 3.10
3779 6033 4.892934 AGTCTCTCTCTCTCTCTCTCTCTC 59.107 50.000 0.00 0.00 0.00 3.20
3780 6034 4.892934 GTCTCTCTCTCTCTCTCTCTCTCT 59.107 50.000 0.00 0.00 0.00 3.10
3781 6035 5.009610 GTCTCTCTCTCTCTCTCTCTCTCTC 59.990 52.000 0.00 0.00 0.00 3.20
3782 6036 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
3783 6037 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
3784 6038 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
3785 6039 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
3786 6040 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
3787 6041 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
3788 6042 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
3789 6043 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
3790 6044 4.219115 TCTCTCTCTCTCTCTCTCTCTCC 58.781 52.174 0.00 0.00 0.00 3.71
3791 6045 3.963374 CTCTCTCTCTCTCTCTCTCTCCA 59.037 52.174 0.00 0.00 0.00 3.86
3792 6046 4.560739 TCTCTCTCTCTCTCTCTCTCCAT 58.439 47.826 0.00 0.00 0.00 3.41
3793 6047 4.346127 TCTCTCTCTCTCTCTCTCTCCATG 59.654 50.000 0.00 0.00 0.00 3.66
3794 6048 3.144506 CTCTCTCTCTCTCTCTCCATGC 58.855 54.545 0.00 0.00 0.00 4.06
3795 6049 2.779430 TCTCTCTCTCTCTCTCCATGCT 59.221 50.000 0.00 0.00 0.00 3.79
3796 6050 3.202818 TCTCTCTCTCTCTCTCCATGCTT 59.797 47.826 0.00 0.00 0.00 3.91
3797 6051 3.289836 TCTCTCTCTCTCTCCATGCTTG 58.710 50.000 0.00 0.00 0.00 4.01
3798 6052 3.025978 CTCTCTCTCTCTCCATGCTTGT 58.974 50.000 0.00 0.00 0.00 3.16
3799 6053 3.439154 TCTCTCTCTCTCCATGCTTGTT 58.561 45.455 0.00 0.00 0.00 2.83
3800 6054 3.837146 TCTCTCTCTCTCCATGCTTGTTT 59.163 43.478 0.00 0.00 0.00 2.83
3801 6055 3.933955 CTCTCTCTCTCCATGCTTGTTTG 59.066 47.826 0.00 0.00 0.00 2.93
3802 6056 3.326006 TCTCTCTCTCCATGCTTGTTTGT 59.674 43.478 0.00 0.00 0.00 2.83
3803 6057 4.070716 CTCTCTCTCCATGCTTGTTTGTT 58.929 43.478 0.00 0.00 0.00 2.83
3804 6058 4.464008 TCTCTCTCCATGCTTGTTTGTTT 58.536 39.130 0.00 0.00 0.00 2.83
3805 6059 4.516698 TCTCTCTCCATGCTTGTTTGTTTC 59.483 41.667 0.00 0.00 0.00 2.78
3806 6060 3.250762 TCTCTCCATGCTTGTTTGTTTCG 59.749 43.478 0.00 0.00 0.00 3.46
3807 6061 2.948979 TCTCCATGCTTGTTTGTTTCGT 59.051 40.909 0.00 0.00 0.00 3.85
3808 6062 3.044986 CTCCATGCTTGTTTGTTTCGTG 58.955 45.455 0.00 0.00 0.00 4.35
3809 6063 2.685388 TCCATGCTTGTTTGTTTCGTGA 59.315 40.909 0.00 0.00 0.00 4.35
3810 6064 3.129462 TCCATGCTTGTTTGTTTCGTGAA 59.871 39.130 0.00 0.00 0.00 3.18
3811 6065 3.862267 CCATGCTTGTTTGTTTCGTGAAA 59.138 39.130 0.00 0.00 0.00 2.69
3837 6252 4.772624 TCATTGTGTAGAGTTCCTGTAGCT 59.227 41.667 0.00 0.00 0.00 3.32
3839 6254 4.785511 TGTGTAGAGTTCCTGTAGCTTC 57.214 45.455 0.00 0.00 0.00 3.86
3845 6260 4.270834 AGAGTTCCTGTAGCTTCATACGA 58.729 43.478 0.00 0.00 0.00 3.43
3870 8711 9.193133 GAGCTTTATTGCGTTACTATTATCAGA 57.807 33.333 0.00 0.00 38.13 3.27
3925 8766 7.912250 CCTGCAGTGTCATTAGTGAATATTTTC 59.088 37.037 13.81 0.00 35.80 2.29
3926 8767 7.463544 TGCAGTGTCATTAGTGAATATTTTCG 58.536 34.615 0.00 0.00 35.80 3.46
3927 8768 7.119116 TGCAGTGTCATTAGTGAATATTTTCGT 59.881 33.333 0.00 0.00 35.80 3.85
4025 9243 7.133891 AGATGTTGTCTGGTTTTCTAATTCG 57.866 36.000 0.00 0.00 35.31 3.34
4050 9580 7.008719 CGAATACTACTATGATGTGCTGTATGC 59.991 40.741 0.00 0.00 43.25 3.14
4070 9600 0.613260 TGTGCTACCCTGCTAAGGTG 59.387 55.000 3.49 0.00 42.74 4.00
4122 9656 2.509870 GCTTTCGCTTTCGATTCTTGG 58.490 47.619 0.00 0.00 45.04 3.61
4124 9658 2.178912 TTCGCTTTCGATTCTTGGGT 57.821 45.000 0.00 0.00 45.04 4.51
4125 9659 3.322211 TTCGCTTTCGATTCTTGGGTA 57.678 42.857 0.00 0.00 45.04 3.69
4126 9660 2.888594 TCGCTTTCGATTCTTGGGTAG 58.111 47.619 0.00 0.00 40.21 3.18
4127 9661 1.327764 CGCTTTCGATTCTTGGGTAGC 59.672 52.381 0.00 0.00 38.10 3.58
4128 9662 2.633488 GCTTTCGATTCTTGGGTAGCT 58.367 47.619 0.00 0.00 0.00 3.32
4132 9666 5.371115 TTTCGATTCTTGGGTAGCTTTTG 57.629 39.130 0.00 0.00 0.00 2.44
4177 9733 9.685828 GTGGCAACTTTTATTGTTAGATTAACA 57.314 29.630 0.00 0.00 41.81 2.41
4187 9779 4.813027 TGTTAGATTAACACCCTCACGTC 58.187 43.478 0.00 0.00 43.23 4.34
4200 9792 3.581755 CCTCACGTCCGTAATTTCAGAA 58.418 45.455 0.00 0.00 0.00 3.02
4205 9797 4.212636 CACGTCCGTAATTTCAGAAAGGTT 59.787 41.667 1.28 0.00 0.00 3.50
4229 9821 8.680903 GTTTGACCTGTCTCATCAATGATATTT 58.319 33.333 0.00 0.00 36.02 1.40
4253 9846 5.048083 TGTTTGTAGGAAATGAAGTGGATGC 60.048 40.000 0.00 0.00 0.00 3.91
4273 9870 3.960102 TGCCAATTCCTATTGATTGGGAC 59.040 43.478 14.80 2.66 43.12 4.46
4297 9894 3.068024 GCTTTGTGAGGACAACAATGGAA 59.932 43.478 0.00 0.00 41.92 3.53
4363 9968 5.378230 TGGAGATGAATTGTTAGCTGGAT 57.622 39.130 0.00 0.00 0.00 3.41
4371 9976 6.121590 TGAATTGTTAGCTGGATGCATCTTA 58.878 36.000 25.28 14.11 45.94 2.10
4392 9997 2.040278 AGCTTCTTGTGCCACCTGATTA 59.960 45.455 0.00 0.00 0.00 1.75
4405 10010 5.505780 CCACCTGATTACATTTACCCTTGA 58.494 41.667 0.00 0.00 0.00 3.02
4408 10013 6.039717 CACCTGATTACATTTACCCTTGATGG 59.960 42.308 0.00 0.00 0.00 3.51
4434 10039 5.991328 TTCAATTCATTATCTCACCGAGC 57.009 39.130 0.00 0.00 0.00 5.03
4469 10078 1.344438 TCTATGGGATGATGACCACGC 59.656 52.381 0.00 0.00 40.05 5.34
4474 10083 1.818674 GGGATGATGACCACGCTTTTT 59.181 47.619 0.00 0.00 0.00 1.94
4648 10260 8.924691 TGTTTGAAGATTCAACTTGTTGAAAAG 58.075 29.630 25.99 0.00 45.99 2.27
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
67 68 2.125512 ACGCTGAAGCCGACATCC 60.126 61.111 0.00 0.00 37.91 3.51
84 85 2.022625 AGAGATGTGGGAGGGAGATTCA 60.023 50.000 0.00 0.00 0.00 2.57
123 124 3.382803 ATGGCTGCTCCTCTCGCAC 62.383 63.158 0.00 0.00 35.26 5.34
152 214 4.330894 TGCTTCTGATGATTGCTCTAAACG 59.669 41.667 0.00 0.00 0.00 3.60
154 216 6.127814 CCTTTGCTTCTGATGATTGCTCTAAA 60.128 38.462 0.00 0.00 0.00 1.85
175 237 2.359531 CGGAGTAGATCGAGAAGCCTTT 59.640 50.000 0.00 0.00 0.00 3.11
195 257 2.808543 GAGCTGGGCAAGATATTTACCG 59.191 50.000 0.00 0.00 0.00 4.02
247 309 7.995263 TGAAATCATTCCTCCCGTAAGGTTCT 61.995 42.308 0.00 0.00 45.61 3.01
335 397 5.540337 AGATAGATAGGATGCTGGAACGAAA 59.460 40.000 0.00 0.00 0.00 3.46
339 401 5.105392 CCAGAGATAGATAGGATGCTGGAAC 60.105 48.000 0.00 0.00 43.22 3.62
431 493 5.105310 GCTTGAGAGGAACCTGTAGTATGAA 60.105 44.000 0.00 0.00 0.00 2.57
432 494 4.402793 GCTTGAGAGGAACCTGTAGTATGA 59.597 45.833 0.00 0.00 0.00 2.15
466 529 4.898861 TGGCCAACTTTTTCTAATCTTGGT 59.101 37.500 0.61 0.00 32.33 3.67
476 540 2.362077 TCTCTTGCTGGCCAACTTTTTC 59.638 45.455 7.01 0.00 0.00 2.29
649 713 0.809241 CATCTGCAAGTCTCCCGAGC 60.809 60.000 0.00 0.00 33.76 5.03
762 826 5.221322 GGATTTCTTGTCTTATCCCCAATGC 60.221 44.000 0.00 0.00 32.20 3.56
772 836 4.721132 ACAAACCCGGATTTCTTGTCTTA 58.279 39.130 0.73 0.00 0.00 2.10
869 940 4.179926 TCACTAGTCTCATGCACAAGTC 57.820 45.455 0.00 0.00 0.00 3.01
922 993 4.086457 ACAACATTACTTGATTGGGGGAC 58.914 43.478 0.00 0.00 0.00 4.46
1364 1449 6.354794 TCTCTTTTCGAGACCAAATTAGGA 57.645 37.500 0.00 0.00 43.72 2.94
1516 2920 8.232913 AGAAAGTTAGTAAACCATTCAAAGCA 57.767 30.769 0.00 0.00 35.73 3.91
2096 4277 1.065854 CATCGAGCCCAAAGAACTCCT 60.066 52.381 0.00 0.00 0.00 3.69
2361 4545 5.471556 TTCACAATCAAACTCTACGGGTA 57.528 39.130 0.00 0.00 0.00 3.69
2499 4683 4.929781 AGACAACCGACGAACCTTATATC 58.070 43.478 0.00 0.00 0.00 1.63
2561 4748 5.351465 AGCGAACCTGTGACAAACTAATATG 59.649 40.000 0.00 0.00 0.00 1.78
2626 4816 3.275143 TCGCAGGAACTTGAACTTTGAA 58.725 40.909 0.00 0.00 34.60 2.69
2644 4834 0.865769 TCTCGGCAAAAAGAACTCGC 59.134 50.000 0.00 0.00 0.00 5.03
2658 4848 1.406069 CCATTCTCCTGTGGTTCTCGG 60.406 57.143 0.00 0.00 0.00 4.63
2673 4863 1.134401 TCATTCCAGCGAGGTCCATTC 60.134 52.381 0.00 0.00 39.02 2.67
2684 4874 4.507710 TGATACAGTTCACTCATTCCAGC 58.492 43.478 0.00 0.00 0.00 4.85
2732 4922 1.298859 GGTAGCTGCAACCCGTCAAG 61.299 60.000 3.61 0.00 0.00 3.02
2733 4923 1.302192 GGTAGCTGCAACCCGTCAA 60.302 57.895 3.61 0.00 0.00 3.18
2736 4926 1.302511 CTTGGTAGCTGCAACCCGT 60.303 57.895 3.61 0.00 36.06 5.28
2738 4928 0.250727 TGTCTTGGTAGCTGCAACCC 60.251 55.000 3.61 0.00 36.06 4.11
2739 4929 1.160137 CTGTCTTGGTAGCTGCAACC 58.840 55.000 3.61 0.00 37.53 3.77
2740 4930 2.169832 TCTGTCTTGGTAGCTGCAAC 57.830 50.000 3.61 0.00 0.00 4.17
2900 5117 5.592587 TGAAATCCCCTAAGAAACCTCAA 57.407 39.130 0.00 0.00 0.00 3.02
2937 5154 6.653740 GCCCTTGTAGTTATGTAGTGAGTTTT 59.346 38.462 0.00 0.00 0.00 2.43
2948 5165 3.199946 TCTCCAAGGCCCTTGTAGTTATG 59.800 47.826 21.65 5.12 39.58 1.90
2992 5209 0.102120 CCAAGTAGCCGCAGAGAGAG 59.898 60.000 0.00 0.00 0.00 3.20
3000 5217 1.576356 CTGATCTTCCAAGTAGCCGC 58.424 55.000 0.00 0.00 0.00 6.53
3005 5222 2.478292 GGGGTCCTGATCTTCCAAGTA 58.522 52.381 0.00 0.00 0.00 2.24
3023 5240 1.813753 CCATGCGTCTTACACCGGG 60.814 63.158 6.32 0.00 0.00 5.73
3098 5315 3.626217 CCATCCATGCATCCTTCGATATG 59.374 47.826 0.00 0.00 0.00 1.78
3133 5353 2.358003 AGTCGCTGAAGGCTGCAC 60.358 61.111 0.50 0.00 38.72 4.57
3169 5392 2.897172 AAAACCAACAGTCCCGCCGT 62.897 55.000 0.00 0.00 0.00 5.68
3285 5508 3.319198 GGACGAGGGAGGGCAACA 61.319 66.667 0.00 0.00 39.74 3.33
3302 5525 9.093970 TGATCTTCGTACATGTAAATTAAGGTG 57.906 33.333 7.25 0.00 0.00 4.00
3392 5615 1.526041 GTATGATGCTCTGCTCAAGCG 59.474 52.381 0.00 0.00 45.83 4.68
3462 5685 5.030295 CGTTCTGCACATCCATATTGAAAC 58.970 41.667 0.00 0.00 0.00 2.78
3469 5692 1.473257 GCTCCGTTCTGCACATCCATA 60.473 52.381 0.00 0.00 0.00 2.74
3509 5738 1.002430 CTCTTCCAGTGCAGCCAAGTA 59.998 52.381 0.00 0.00 0.00 2.24
3545 5774 2.874780 CGTAGCGTCGAGGCACAC 60.875 66.667 29.61 23.72 34.64 3.82
3551 5780 0.656259 TGAGATTCCGTAGCGTCGAG 59.344 55.000 0.00 0.00 0.00 4.04
3665 5898 5.798934 GTCGAAGCAGAAATTAGTCGTCTAA 59.201 40.000 4.61 4.61 39.95 2.10
3667 5900 4.082679 AGTCGAAGCAGAAATTAGTCGTCT 60.083 41.667 0.00 0.00 0.00 4.18
3696 5936 0.105964 AACTTGCACGTACCAGCTGA 59.894 50.000 17.39 0.00 0.00 4.26
3697 5937 0.944386 AAACTTGCACGTACCAGCTG 59.056 50.000 6.78 6.78 0.00 4.24
3722 5962 4.222336 AGAGAGAGAGAGAGAGAGAGAGG 58.778 52.174 0.00 0.00 0.00 3.69
3744 5998 4.096681 AGAGAGAGACTGAGAGAGACTGA 58.903 47.826 0.00 0.00 0.00 3.41
3745 5999 4.161189 AGAGAGAGAGACTGAGAGAGACTG 59.839 50.000 0.00 0.00 0.00 3.51
3746 6000 4.357325 AGAGAGAGAGACTGAGAGAGACT 58.643 47.826 0.00 0.00 0.00 3.24
3747 6001 4.404073 AGAGAGAGAGAGACTGAGAGAGAC 59.596 50.000 0.00 0.00 0.00 3.36
3748 6002 4.614475 AGAGAGAGAGAGACTGAGAGAGA 58.386 47.826 0.00 0.00 0.00 3.10
3749 6003 4.648762 AGAGAGAGAGAGAGACTGAGAGAG 59.351 50.000 0.00 0.00 0.00 3.20
3750 6004 4.614475 AGAGAGAGAGAGAGACTGAGAGA 58.386 47.826 0.00 0.00 0.00 3.10
3751 6005 4.648762 AGAGAGAGAGAGAGAGACTGAGAG 59.351 50.000 0.00 0.00 0.00 3.20
3752 6006 4.614475 AGAGAGAGAGAGAGAGACTGAGA 58.386 47.826 0.00 0.00 0.00 3.27
3753 6007 4.648762 AGAGAGAGAGAGAGAGAGACTGAG 59.351 50.000 0.00 0.00 0.00 3.35
3754 6008 4.614475 AGAGAGAGAGAGAGAGAGACTGA 58.386 47.826 0.00 0.00 0.00 3.41
3755 6009 4.648762 AGAGAGAGAGAGAGAGAGAGACTG 59.351 50.000 0.00 0.00 0.00 3.51
3756 6010 4.877773 AGAGAGAGAGAGAGAGAGAGACT 58.122 47.826 0.00 0.00 0.00 3.24
3757 6011 4.892934 AGAGAGAGAGAGAGAGAGAGAGAC 59.107 50.000 0.00 0.00 0.00 3.36
3758 6012 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
3759 6013 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
3760 6014 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
3761 6015 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
3762 6016 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
3763 6017 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
3764 6018 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
3765 6019 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
3766 6020 5.136068 AGAGAGAGAGAGAGAGAGAGAGA 57.864 47.826 0.00 0.00 0.00 3.10
3767 6021 4.280677 GGAGAGAGAGAGAGAGAGAGAGAG 59.719 54.167 0.00 0.00 0.00 3.20
3768 6022 4.219115 GGAGAGAGAGAGAGAGAGAGAGA 58.781 52.174 0.00 0.00 0.00 3.10
3769 6023 3.963374 TGGAGAGAGAGAGAGAGAGAGAG 59.037 52.174 0.00 0.00 0.00 3.20
3770 6024 3.994317 TGGAGAGAGAGAGAGAGAGAGA 58.006 50.000 0.00 0.00 0.00 3.10
3771 6025 4.639334 CATGGAGAGAGAGAGAGAGAGAG 58.361 52.174 0.00 0.00 0.00 3.20
3772 6026 3.181451 GCATGGAGAGAGAGAGAGAGAGA 60.181 52.174 0.00 0.00 0.00 3.10
3773 6027 3.144506 GCATGGAGAGAGAGAGAGAGAG 58.855 54.545 0.00 0.00 0.00 3.20
3774 6028 2.779430 AGCATGGAGAGAGAGAGAGAGA 59.221 50.000 0.00 0.00 0.00 3.10
3775 6029 3.219176 AGCATGGAGAGAGAGAGAGAG 57.781 52.381 0.00 0.00 0.00 3.20
3776 6030 3.289836 CAAGCATGGAGAGAGAGAGAGA 58.710 50.000 0.00 0.00 0.00 3.10
3777 6031 3.025978 ACAAGCATGGAGAGAGAGAGAG 58.974 50.000 0.00 0.00 0.00 3.20
3778 6032 3.098774 ACAAGCATGGAGAGAGAGAGA 57.901 47.619 0.00 0.00 0.00 3.10
3779 6033 3.891422 AACAAGCATGGAGAGAGAGAG 57.109 47.619 0.00 0.00 0.00 3.20
3780 6034 3.326006 ACAAACAAGCATGGAGAGAGAGA 59.674 43.478 0.00 0.00 0.00 3.10
3781 6035 3.672808 ACAAACAAGCATGGAGAGAGAG 58.327 45.455 0.00 0.00 0.00 3.20
3782 6036 3.777106 ACAAACAAGCATGGAGAGAGA 57.223 42.857 0.00 0.00 0.00 3.10
3783 6037 4.612259 CGAAACAAACAAGCATGGAGAGAG 60.612 45.833 0.00 0.00 0.00 3.20
3784 6038 3.250762 CGAAACAAACAAGCATGGAGAGA 59.749 43.478 0.00 0.00 0.00 3.10
3785 6039 3.003689 ACGAAACAAACAAGCATGGAGAG 59.996 43.478 0.00 0.00 0.00 3.20
3786 6040 2.948979 ACGAAACAAACAAGCATGGAGA 59.051 40.909 0.00 0.00 0.00 3.71
3787 6041 3.044986 CACGAAACAAACAAGCATGGAG 58.955 45.455 0.00 0.00 0.00 3.86
3788 6042 2.685388 TCACGAAACAAACAAGCATGGA 59.315 40.909 0.00 0.00 0.00 3.41
3789 6043 3.077229 TCACGAAACAAACAAGCATGG 57.923 42.857 0.00 0.00 0.00 3.66
3802 6056 5.361427 TCTACACAATGAGGTTTCACGAAA 58.639 37.500 0.00 0.00 35.83 3.46
3803 6057 4.951254 TCTACACAATGAGGTTTCACGAA 58.049 39.130 0.00 0.00 35.83 3.85
3804 6058 4.038763 ACTCTACACAATGAGGTTTCACGA 59.961 41.667 0.00 0.00 35.83 4.35
3805 6059 4.307432 ACTCTACACAATGAGGTTTCACG 58.693 43.478 0.00 0.00 35.83 4.35
3806 6060 5.179555 GGAACTCTACACAATGAGGTTTCAC 59.820 44.000 0.00 0.00 35.83 3.18
3807 6061 5.071788 AGGAACTCTACACAATGAGGTTTCA 59.928 40.000 0.00 0.00 37.81 2.69
3808 6062 5.409826 CAGGAACTCTACACAATGAGGTTTC 59.590 44.000 0.00 0.00 34.60 2.78
3809 6063 5.163195 ACAGGAACTCTACACAATGAGGTTT 60.163 40.000 0.00 0.00 34.60 3.27
3810 6064 4.348168 ACAGGAACTCTACACAATGAGGTT 59.652 41.667 0.00 0.00 34.60 3.50
3811 6065 3.904339 ACAGGAACTCTACACAATGAGGT 59.096 43.478 0.00 0.00 34.60 3.85
3812 6066 4.543590 ACAGGAACTCTACACAATGAGG 57.456 45.455 0.00 0.00 34.60 3.86
3813 6067 5.105554 AGCTACAGGAACTCTACACAATGAG 60.106 44.000 0.00 0.00 34.60 2.90
3814 6068 4.772624 AGCTACAGGAACTCTACACAATGA 59.227 41.667 0.00 0.00 34.60 2.57
3815 6069 5.078411 AGCTACAGGAACTCTACACAATG 57.922 43.478 0.00 0.00 34.60 2.82
3816 6070 5.246203 TGAAGCTACAGGAACTCTACACAAT 59.754 40.000 0.00 0.00 34.60 2.71
3817 6071 4.587262 TGAAGCTACAGGAACTCTACACAA 59.413 41.667 0.00 0.00 34.60 3.33
3820 6235 5.066117 CGTATGAAGCTACAGGAACTCTACA 59.934 44.000 0.00 0.00 34.60 2.74
3837 6252 5.808540 AGTAACGCAATAAAGCTCGTATGAA 59.191 36.000 0.00 0.00 34.50 2.57
3839 6254 5.637104 AGTAACGCAATAAAGCTCGTATG 57.363 39.130 0.00 0.00 34.50 2.39
3845 6260 9.542462 TTCTGATAATAGTAACGCAATAAAGCT 57.458 29.630 0.00 0.00 0.00 3.74
3870 8711 7.666623 ACATTTCCATGATAAAGAAACGGTTT 58.333 30.769 5.68 5.68 32.67 3.27
3873 8714 8.532977 AAAACATTTCCATGATAAAGAAACGG 57.467 30.769 0.00 0.00 32.67 4.44
3893 8734 4.275689 CACTAATGACACTGCAGGAAAACA 59.724 41.667 19.93 10.79 0.00 2.83
3925 8766 2.167693 TGGTGGAAATCAGGCTACTACG 59.832 50.000 0.00 0.00 0.00 3.51
3926 8767 3.906720 TGGTGGAAATCAGGCTACTAC 57.093 47.619 0.00 0.00 0.00 2.73
3927 8768 4.288626 AGTTTGGTGGAAATCAGGCTACTA 59.711 41.667 0.00 0.00 0.00 1.82
4025 9243 8.179148 GCATACAGCACATCATAGTAGTATTC 57.821 38.462 0.00 0.00 44.79 1.75
4050 9580 0.905357 ACCTTAGCAGGGTAGCACAG 59.095 55.000 0.00 0.00 46.01 3.66
4122 9656 7.539712 AAAGAAAAAGAAAGCAAAAGCTACC 57.460 32.000 0.00 0.00 0.00 3.18
4177 9733 1.619827 TGAAATTACGGACGTGAGGGT 59.380 47.619 7.73 0.00 0.00 4.34
4185 9777 6.140786 GTCAAACCTTTCTGAAATTACGGAC 58.859 40.000 11.71 9.62 0.00 4.79
4187 9779 5.458015 GGTCAAACCTTTCTGAAATTACGG 58.542 41.667 2.88 4.12 34.73 4.02
4200 9792 5.456619 TCATTGATGAGACAGGTCAAACCTT 60.457 40.000 1.84 0.00 38.23 3.50
4205 9797 7.830697 ACAAATATCATTGATGAGACAGGTCAA 59.169 33.333 9.46 0.00 40.64 3.18
4229 9821 5.048083 GCATCCACTTCATTTCCTACAAACA 60.048 40.000 0.00 0.00 0.00 2.83
4253 9846 4.038402 GCTGTCCCAATCAATAGGAATTGG 59.962 45.833 7.06 7.06 42.40 3.16
4273 9870 3.551454 CCATTGTTGTCCTCACAAAGCTG 60.551 47.826 0.00 0.00 44.32 4.24
4363 9968 2.086869 GGCACAAGAAGCTAAGATGCA 58.913 47.619 10.79 0.00 33.24 3.96
4371 9976 0.403271 ATCAGGTGGCACAAGAAGCT 59.597 50.000 20.82 2.74 44.16 3.74
4392 9997 5.579047 TGAATGTCCATCAAGGGTAAATGT 58.421 37.500 0.00 0.00 38.24 2.71
4405 10010 7.040892 CGGTGAGATAATGAATTGAATGTCCAT 60.041 37.037 0.00 0.00 0.00 3.41
4408 10013 7.482654 TCGGTGAGATAATGAATTGAATGTC 57.517 36.000 0.00 0.00 0.00 3.06
4434 10039 4.101585 TCCCATAGAGGTAACAGAATGCAG 59.898 45.833 0.00 0.00 35.47 4.41
4469 10078 9.139174 CAACCCTTATTACAAGCACATAAAAAG 57.861 33.333 0.00 0.00 0.00 2.27
4474 10083 5.650266 CACCAACCCTTATTACAAGCACATA 59.350 40.000 0.00 0.00 0.00 2.29


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.