Multiple sequence alignment - TraesCS2B01G626300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G626300 chr2B 100.000 5170 0 0 1 5170 798616841 798611672 0.000000e+00 9548.0
1 TraesCS2B01G626300 chr2B 94.431 3771 169 15 643 4396 798722279 798726025 0.000000e+00 5762.0
2 TraesCS2B01G626300 chr2B 86.341 1640 220 4 2523 4160 236776593 236774956 0.000000e+00 1784.0
3 TraesCS2B01G626300 chr2B 85.930 1656 220 6 2518 4170 798318262 798316617 0.000000e+00 1755.0
4 TraesCS2B01G626300 chr2B 95.714 560 20 3 1 557 798718150 798718708 0.000000e+00 898.0
5 TraesCS2B01G626300 chr2B 84.980 739 106 3 1667 2401 236777486 236776749 0.000000e+00 745.0
6 TraesCS2B01G626300 chr2B 97.909 287 6 0 4884 5170 798590888 798590602 1.000000e-136 497.0
7 TraesCS2B01G626300 chr2B 93.031 287 20 0 4884 5170 798730896 798731182 2.230000e-113 420.0
8 TraesCS2B01G626300 chr2B 97.059 102 3 0 4610 4711 798729377 798729478 6.880000e-39 172.0
9 TraesCS2B01G626300 chr2B 78.571 238 36 9 1000 1237 798321075 798320853 5.400000e-30 143.0
10 TraesCS2B01G626300 chr2B 97.183 71 2 0 4404 4474 798729140 798729210 2.530000e-23 121.0
11 TraesCS2B01G626300 chr2B 92.208 77 2 1 4515 4587 798729302 798729378 7.080000e-19 106.0
12 TraesCS2B01G626300 chr2A 91.952 3914 197 42 554 4396 765038532 765042398 0.000000e+00 5374.0
13 TraesCS2B01G626300 chr2A 86.098 1640 224 4 2523 4160 194423278 194421641 0.000000e+00 1762.0
14 TraesCS2B01G626300 chr2A 90.231 563 47 6 1 557 765036369 765036929 0.000000e+00 728.0
15 TraesCS2B01G626300 chr2A 84.626 735 106 7 1667 2396 194424188 194423456 0.000000e+00 725.0
16 TraesCS2B01G626300 chr2D 93.091 3054 165 19 1314 4362 639666067 639669079 0.000000e+00 4429.0
17 TraesCS2B01G626300 chr2D 86.768 1640 213 4 2523 4160 180087354 180085717 0.000000e+00 1823.0
18 TraesCS2B01G626300 chr2D 86.641 1587 210 2 2513 4098 639396703 639398288 0.000000e+00 1755.0
19 TraesCS2B01G626300 chr2D 87.349 830 47 25 553 1327 639665217 639666043 0.000000e+00 898.0
20 TraesCS2B01G626300 chr2D 84.980 739 106 3 1667 2401 180088265 180087528 0.000000e+00 745.0
21 TraesCS2B01G626300 chr2D 86.063 287 40 0 4884 5170 639674055 639674341 5.030000e-80 309.0
22 TraesCS2B01G626300 chr7D 86.395 1573 211 3 2513 4082 638473416 638474988 0.000000e+00 1716.0
23 TraesCS2B01G626300 chr7D 85.333 750 100 7 1652 2396 638470760 638471504 0.000000e+00 767.0
24 TraesCS2B01G626300 chr7D 85.246 122 12 5 1115 1233 638470229 638470347 2.530000e-23 121.0
25 TraesCS2B01G626300 chr7B 86.721 738 93 3 1661 2397 734252503 734251770 0.000000e+00 815.0
26 TraesCS2B01G626300 chr7B 76.316 456 80 17 1 454 577313635 577314064 8.720000e-53 219.0
27 TraesCS2B01G626300 chr7B 84.677 124 13 5 1113 1233 734252884 734252764 9.090000e-23 119.0
28 TraesCS2B01G626300 chr7A 86.100 741 100 2 1661 2401 727433902 727433165 0.000000e+00 795.0
29 TraesCS2B01G626300 chr7A 83.193 119 11 7 1118 1233 727434223 727434111 3.290000e-17 100.0
30 TraesCS2B01G626300 chrUn 94.444 72 4 0 1163 1234 88119265 88119194 1.520000e-20 111.0
31 TraesCS2B01G626300 chrUn 94.444 72 4 0 1163 1234 88974541 88974470 1.520000e-20 111.0
32 TraesCS2B01G626300 chr3D 89.286 56 5 1 1461 1515 11445081 11445136 9.290000e-08 69.4
33 TraesCS2B01G626300 chr6A 100.000 34 0 0 1464 1497 563741857 563741824 4.320000e-06 63.9
34 TraesCS2B01G626300 chr4A 97.222 36 1 0 1460 1495 625272328 625272293 1.550000e-05 62.1
35 TraesCS2B01G626300 chr3A 97.222 36 1 0 1461 1496 96682120 96682085 1.550000e-05 62.1
36 TraesCS2B01G626300 chr3A 83.333 66 8 3 1468 1532 743868786 743868723 2.010000e-04 58.4
37 TraesCS2B01G626300 chr3B 97.143 35 1 0 1464 1498 403404782 403404748 5.590000e-05 60.2


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G626300 chr2B 798611672 798616841 5169 True 9548.0 9548 100.000000 1 5170 1 chr2B.!!$R2 5169
1 TraesCS2B01G626300 chr2B 236774956 236777486 2530 True 1264.5 1784 85.660500 1667 4160 2 chr2B.!!$R3 2493
2 TraesCS2B01G626300 chr2B 798718150 798731182 13032 False 1246.5 5762 94.937667 1 5170 6 chr2B.!!$F1 5169
3 TraesCS2B01G626300 chr2B 798316617 798321075 4458 True 949.0 1755 82.250500 1000 4170 2 chr2B.!!$R4 3170
4 TraesCS2B01G626300 chr2A 765036369 765042398 6029 False 3051.0 5374 91.091500 1 4396 2 chr2A.!!$F1 4395
5 TraesCS2B01G626300 chr2A 194421641 194424188 2547 True 1243.5 1762 85.362000 1667 4160 2 chr2A.!!$R1 2493
6 TraesCS2B01G626300 chr2D 639665217 639669079 3862 False 2663.5 4429 90.220000 553 4362 2 chr2D.!!$F3 3809
7 TraesCS2B01G626300 chr2D 639396703 639398288 1585 False 1755.0 1755 86.641000 2513 4098 1 chr2D.!!$F1 1585
8 TraesCS2B01G626300 chr2D 180085717 180088265 2548 True 1284.0 1823 85.874000 1667 4160 2 chr2D.!!$R1 2493
9 TraesCS2B01G626300 chr7D 638470229 638474988 4759 False 868.0 1716 85.658000 1115 4082 3 chr7D.!!$F1 2967
10 TraesCS2B01G626300 chr7B 734251770 734252884 1114 True 467.0 815 85.699000 1113 2397 2 chr7B.!!$R1 1284
11 TraesCS2B01G626300 chr7A 727433165 727434223 1058 True 447.5 795 84.646500 1118 2401 2 chr7A.!!$R1 1283

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
513 520 1.541588 GCTCTAGTTGCCTGGTTTTGG 59.458 52.381 0.00 0.0 0.00 3.28 F
1161 5058 0.395686 ATGAGGGAGGCATCATGTCG 59.604 55.000 0.00 0.0 34.88 4.35 F
2148 6254 0.323629 TTGGGATGAAGACACGGTCC 59.676 55.000 1.06 0.0 32.18 4.46 F
3575 10431 0.738412 GCACGTACATGGCGTACCTT 60.738 55.000 15.33 0.0 46.67 3.50 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1665 5771 1.160137 GCACGAGCATCAAGAACCTT 58.840 50.0 0.00 0.0 41.58 3.50 R
2681 9534 1.026182 GGAGCATCACGTTCATGGCA 61.026 55.0 6.42 0.0 36.25 4.92 R
3778 10634 0.235926 GAACTTGTCGTTGGAGCAGC 59.764 55.0 0.00 0.0 35.56 5.25 R
4993 16321 0.179004 ACGAGGATGTTGTGGCCAAA 60.179 50.0 7.24 0.0 30.94 3.28 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
247 254 1.742761 CATGCGTCATGGAAGAAGGT 58.257 50.000 10.75 0.00 38.11 3.50
297 304 9.429359 CAATCTTTACATCAGATGGGTAGATAC 57.571 37.037 15.13 0.00 31.00 2.24
335 342 9.520515 AGGTGAACATGAAAATAAAGTAGATGT 57.479 29.630 0.00 0.00 0.00 3.06
411 418 4.098654 TGAGAGCAAGCTACCAACTAGATC 59.901 45.833 0.00 0.00 0.00 2.75
464 471 4.750021 ATCTTAAGCTCAGACTGATGCA 57.250 40.909 21.31 0.00 0.00 3.96
466 473 5.095145 TCTTAAGCTCAGACTGATGCAAT 57.905 39.130 21.31 14.81 0.00 3.56
477 484 5.529800 CAGACTGATGCAATGGTGATTCATA 59.470 40.000 0.00 0.00 0.00 2.15
481 488 6.039047 ACTGATGCAATGGTGATTCATAAGAC 59.961 38.462 0.00 0.00 0.00 3.01
513 520 1.541588 GCTCTAGTTGCCTGGTTTTGG 59.458 52.381 0.00 0.00 0.00 3.28
532 539 6.515272 TTTGGAACTTGATTATGAGAAGGC 57.485 37.500 0.00 0.00 0.00 4.35
547 554 2.158475 AGAAGGCCCATGACAAAGTGAA 60.158 45.455 0.00 0.00 0.00 3.18
574 4421 2.385757 TTCATGCGCACACACGTTGG 62.386 55.000 14.90 0.00 34.88 3.77
615 4462 2.289257 ACCTTTCCCTACGTCCTTTTCG 60.289 50.000 0.00 0.00 0.00 3.46
625 4472 2.289195 ACGTCCTTTTCGCCACATCTTA 60.289 45.455 0.00 0.00 0.00 2.10
635 4482 6.603237 TTCGCCACATCTTAACTTGATATG 57.397 37.500 0.00 0.00 0.00 1.78
692 4551 9.093970 TCGATGTCGACATGAAATATACTTTTT 57.906 29.630 34.48 6.31 44.22 1.94
908 4803 2.489971 GCTGCCCACGCTGTATATAAA 58.510 47.619 0.00 0.00 36.39 1.40
946 4843 2.253610 TCCCCAAGACACGAACATACT 58.746 47.619 0.00 0.00 0.00 2.12
1161 5058 0.395686 ATGAGGGAGGCATCATGTCG 59.604 55.000 0.00 0.00 34.88 4.35
1312 5267 2.533942 AGTGCGCGTTTGATTGTTTTTC 59.466 40.909 8.43 0.00 0.00 2.29
1366 5321 9.415008 AGAAATACTTAGCAATGTCTAGAGAGA 57.585 33.333 0.00 0.00 0.00 3.10
2081 6187 2.902423 TTTGCTGCGTTGTGGGTCCT 62.902 55.000 0.00 0.00 0.00 3.85
2148 6254 0.323629 TTGGGATGAAGACACGGTCC 59.676 55.000 1.06 0.00 32.18 4.46
2289 6410 4.933400 GCCTACAACTCGAATAACAAAGGA 59.067 41.667 0.00 0.00 0.00 3.36
2455 9255 9.937577 GAAAAATATTTTGAGTAATGCGTTGTC 57.062 29.630 14.04 0.00 0.00 3.18
2456 9256 7.719689 AAATATTTTGAGTAATGCGTTGTCG 57.280 32.000 0.08 0.00 40.37 4.35
2466 9272 4.593597 AATGCGTTGTCGGTGTATAAAG 57.406 40.909 0.00 0.00 37.56 1.85
2548 9401 3.707102 GTCCTACTAGACCATCCAAGCTT 59.293 47.826 0.00 0.00 0.00 3.74
2552 9405 6.098409 TCCTACTAGACCATCCAAGCTTTAAG 59.902 42.308 0.00 0.00 0.00 1.85
2573 9426 2.046023 CAGCTTGGATCACCCGCA 60.046 61.111 0.00 0.00 37.93 5.69
2639 9492 2.158900 CCCCATGCTCGTCTACATTTCT 60.159 50.000 0.00 0.00 0.00 2.52
2681 9534 2.031870 GACAACCAAAAGAAGGCAGGT 58.968 47.619 0.00 0.00 0.00 4.00
2711 9564 3.356639 GATGCTCCGTGTCTCCGCA 62.357 63.158 0.00 0.00 34.83 5.69
2771 9624 3.649073 CGACCACTACATCAACAACTCA 58.351 45.455 0.00 0.00 0.00 3.41
2906 9759 2.413310 ACCACAACCGTGTCTTCTTT 57.587 45.000 0.00 0.00 41.93 2.52
3023 9876 3.005261 CGCCACACTATAGAGCAGAGAAT 59.995 47.826 6.78 0.00 0.00 2.40
3350 10203 2.678934 ACCGAGCGCCTCTACCAA 60.679 61.111 2.29 0.00 0.00 3.67
3444 10297 3.709633 ACCCTCTGCAGCGCATCA 61.710 61.111 11.47 5.71 38.13 3.07
3500 10353 4.253685 CGGTGTTCATCTTGTCCTACAAT 58.746 43.478 0.00 0.00 37.48 2.71
3575 10431 0.738412 GCACGTACATGGCGTACCTT 60.738 55.000 15.33 0.00 46.67 3.50
3580 10436 3.794270 CATGGCGTACCTTGTCGG 58.206 61.111 0.00 0.00 36.56 4.79
3614 10470 1.068333 GTGCACTTGATCGGCATGTTT 60.068 47.619 10.32 0.00 40.05 2.83
3778 10634 0.609131 ACATCCAAGCAAACGGAGGG 60.609 55.000 0.00 0.00 37.41 4.30
3873 10729 3.657448 ATCGTCAATGTCGCGGCCA 62.657 57.895 8.89 4.83 0.00 5.36
4130 10986 2.032808 GTCACAAGTTGCCGTTTCTCTC 60.033 50.000 1.81 0.00 0.00 3.20
4175 11031 1.075525 TGGATCTGGGTAGGGACGG 60.076 63.158 0.00 0.00 0.00 4.79
4186 11042 2.100989 GTAGGGACGGACAACTCATCT 58.899 52.381 0.00 0.00 0.00 2.90
4187 11043 1.645710 AGGGACGGACAACTCATCTT 58.354 50.000 0.00 0.00 0.00 2.40
4188 11044 1.978580 AGGGACGGACAACTCATCTTT 59.021 47.619 0.00 0.00 0.00 2.52
4189 11045 2.372172 AGGGACGGACAACTCATCTTTT 59.628 45.455 0.00 0.00 0.00 2.27
4190 11046 3.581332 AGGGACGGACAACTCATCTTTTA 59.419 43.478 0.00 0.00 0.00 1.52
4191 11047 4.225267 AGGGACGGACAACTCATCTTTTAT 59.775 41.667 0.00 0.00 0.00 1.40
4308 11165 1.133699 AGTACCCCGTGTATCCATCGA 60.134 52.381 0.00 0.00 0.00 3.59
4309 11166 1.268899 GTACCCCGTGTATCCATCGAG 59.731 57.143 0.00 0.00 0.00 4.04
4353 11210 1.253100 AATTACCCTTTGTGCACCCG 58.747 50.000 15.69 2.09 0.00 5.28
4396 11265 3.514777 TCACGTCTTCATGTGAGCC 57.485 52.632 0.00 0.00 42.61 4.70
4397 11266 0.969149 TCACGTCTTCATGTGAGCCT 59.031 50.000 0.00 0.00 42.61 4.58
4399 11268 0.109086 ACGTCTTCATGTGAGCCTCG 60.109 55.000 0.00 2.07 0.00 4.63
4400 11269 0.803768 CGTCTTCATGTGAGCCTCGG 60.804 60.000 0.00 0.00 0.00 4.63
4401 11270 1.086634 GTCTTCATGTGAGCCTCGGC 61.087 60.000 0.00 0.00 42.33 5.54
4402 11271 1.078918 CTTCATGTGAGCCTCGGCA 60.079 57.895 11.02 0.00 44.88 5.69
4428 14404 2.509336 CATGAGGCGGACCGTGTC 60.509 66.667 16.73 12.77 42.76 3.67
4476 14467 2.352651 CGCGTCCATTTCATCAGTTGAT 59.647 45.455 0.00 0.00 33.34 2.57
4497 14488 3.019003 GCAGCCAGCTCTCCGGTTA 62.019 63.158 0.00 0.00 41.15 2.85
4510 14501 2.235016 CGGTTAGTGCGCCATACGG 61.235 63.158 4.18 0.00 43.93 4.02
4511 14502 1.142314 GGTTAGTGCGCCATACGGA 59.858 57.895 4.18 0.00 43.93 4.69
4512 14503 0.874607 GGTTAGTGCGCCATACGGAG 60.875 60.000 4.18 0.00 45.46 4.63
4569 14600 4.385358 AACAGTAACCTTGGTTTGCTTG 57.615 40.909 10.52 6.95 0.00 4.01
4593 14624 2.048503 GACGTCCCTGTCCAACGG 60.049 66.667 3.51 0.00 40.58 4.44
4594 14625 4.309950 ACGTCCCTGTCCAACGGC 62.310 66.667 0.00 0.00 40.58 5.68
4595 14626 4.003788 CGTCCCTGTCCAACGGCT 62.004 66.667 0.00 0.00 32.96 5.52
4596 14627 2.430367 GTCCCTGTCCAACGGCTT 59.570 61.111 0.00 0.00 0.00 4.35
4597 14628 1.671379 GTCCCTGTCCAACGGCTTC 60.671 63.158 0.00 0.00 0.00 3.86
4598 14629 2.742372 CCCTGTCCAACGGCTTCG 60.742 66.667 0.00 0.00 40.22 3.79
4610 14641 3.314541 ACGGCTTCGTTGAAATAGAGT 57.685 42.857 0.00 0.00 45.87 3.24
4658 14689 2.288395 GGGCACAAGAACACAAGATTGG 60.288 50.000 0.00 0.00 0.00 3.16
4662 14693 4.268405 GCACAAGAACACAAGATTGGTTTG 59.732 41.667 0.00 0.00 0.00 2.93
4681 14712 5.221382 GGTTTGTCCTCAGTACAGTAGACAA 60.221 44.000 16.09 16.09 41.17 3.18
4711 14742 0.905357 TCCAGAGCAGCCCTTAAGAC 59.095 55.000 3.36 0.00 0.00 3.01
4720 15318 3.685272 GCAGCCCTTAAGACTAAACAGTC 59.315 47.826 3.36 0.00 39.00 3.51
4721 15319 3.927142 CAGCCCTTAAGACTAAACAGTCG 59.073 47.826 3.36 0.00 43.15 4.18
4722 15320 3.577415 AGCCCTTAAGACTAAACAGTCGT 59.423 43.478 3.36 0.00 43.15 4.34
4734 15332 2.175878 ACAGTCGTAGTACCGTGACT 57.824 50.000 5.85 5.85 42.14 3.41
4737 15335 0.518636 GTCGTAGTACCGTGACTGCA 59.481 55.000 0.00 0.00 32.08 4.41
4756 15354 3.476386 CTGTCAGCCAGGTCAGGT 58.524 61.111 0.00 0.00 37.54 4.00
4757 15355 1.004080 CTGTCAGCCAGGTCAGGTG 60.004 63.158 0.00 0.00 37.54 4.00
4758 15356 2.348998 GTCAGCCAGGTCAGGTGG 59.651 66.667 0.00 0.00 38.21 4.61
4759 15357 2.204034 TCAGCCAGGTCAGGTGGA 59.796 61.111 0.00 0.00 37.23 4.02
4760 15358 1.229625 TCAGCCAGGTCAGGTGGAT 60.230 57.895 0.00 0.00 37.23 3.41
4761 15359 1.222936 CAGCCAGGTCAGGTGGATC 59.777 63.158 0.00 0.00 37.23 3.36
4762 15360 1.997874 AGCCAGGTCAGGTGGATCC 60.998 63.158 4.20 4.20 37.23 3.36
4763 15361 3.049080 GCCAGGTCAGGTGGATCCC 62.049 68.421 9.90 0.00 37.23 3.85
4764 15362 2.378634 CCAGGTCAGGTGGATCCCC 61.379 68.421 9.90 10.24 37.23 4.81
4765 15363 1.616327 CAGGTCAGGTGGATCCCCA 60.616 63.158 18.32 0.00 40.95 4.96
4775 15373 1.806496 TGGATCCCCACCACTCTATG 58.194 55.000 9.90 0.00 37.58 2.23
4776 15374 1.293763 TGGATCCCCACCACTCTATGA 59.706 52.381 9.90 0.00 37.58 2.15
4777 15375 2.089982 TGGATCCCCACCACTCTATGAT 60.090 50.000 9.90 0.00 37.58 2.45
4778 15376 2.304180 GGATCCCCACCACTCTATGATG 59.696 54.545 0.00 0.00 0.00 3.07
4779 15377 1.131638 TCCCCACCACTCTATGATGC 58.868 55.000 0.00 0.00 0.00 3.91
4780 15378 0.839277 CCCCACCACTCTATGATGCA 59.161 55.000 0.00 0.00 0.00 3.96
4781 15379 1.422781 CCCCACCACTCTATGATGCAT 59.577 52.381 0.00 0.00 0.00 3.96
4782 15380 2.158564 CCCCACCACTCTATGATGCATT 60.159 50.000 0.00 0.00 0.00 3.56
4783 15381 2.882761 CCCACCACTCTATGATGCATTG 59.117 50.000 0.00 0.00 0.00 2.82
4784 15382 2.882761 CCACCACTCTATGATGCATTGG 59.117 50.000 0.00 5.10 0.00 3.16
4785 15383 3.434024 CCACCACTCTATGATGCATTGGA 60.434 47.826 16.37 1.69 0.00 3.53
4786 15384 3.562973 CACCACTCTATGATGCATTGGAC 59.437 47.826 16.37 0.00 0.00 4.02
4787 15385 3.200605 ACCACTCTATGATGCATTGGACA 59.799 43.478 16.37 3.45 0.00 4.02
4788 15386 3.562973 CCACTCTATGATGCATTGGACAC 59.437 47.826 0.00 0.00 0.00 3.67
4789 15387 4.449131 CACTCTATGATGCATTGGACACT 58.551 43.478 0.00 0.00 0.00 3.55
4790 15388 4.510711 CACTCTATGATGCATTGGACACTC 59.489 45.833 0.00 0.00 0.00 3.51
4791 15389 4.162888 ACTCTATGATGCATTGGACACTCA 59.837 41.667 0.00 0.00 0.00 3.41
4792 15390 5.101648 TCTATGATGCATTGGACACTCAA 57.898 39.130 0.00 0.00 0.00 3.02
4793 15391 5.121105 TCTATGATGCATTGGACACTCAAG 58.879 41.667 0.00 0.00 0.00 3.02
4794 15392 1.814394 TGATGCATTGGACACTCAAGC 59.186 47.619 0.00 0.00 0.00 4.01
4795 15393 0.806868 ATGCATTGGACACTCAAGCG 59.193 50.000 0.00 0.00 0.00 4.68
4796 15394 0.250252 TGCATTGGACACTCAAGCGA 60.250 50.000 0.00 0.00 0.00 4.93
4797 15395 0.445436 GCATTGGACACTCAAGCGAG 59.555 55.000 0.00 0.00 45.49 5.03
4798 15396 0.445436 CATTGGACACTCAAGCGAGC 59.555 55.000 0.00 0.00 43.66 5.03
4799 15397 0.322975 ATTGGACACTCAAGCGAGCT 59.677 50.000 0.00 0.00 43.66 4.09
4800 15398 0.319900 TTGGACACTCAAGCGAGCTC 60.320 55.000 2.73 2.73 43.66 4.09
4801 15399 1.803519 GGACACTCAAGCGAGCTCG 60.804 63.158 31.37 31.37 43.66 5.03
4802 15400 1.081108 GACACTCAAGCGAGCTCGT 60.081 57.895 34.46 19.89 43.66 4.18
4803 15401 1.340657 GACACTCAAGCGAGCTCGTG 61.341 60.000 34.46 25.91 43.66 4.35
4804 15402 2.091112 CACTCAAGCGAGCTCGTGG 61.091 63.158 34.46 23.80 43.66 4.94
4805 15403 2.259818 CTCAAGCGAGCTCGTGGT 59.740 61.111 34.46 18.54 42.22 4.16
4806 15404 1.241990 ACTCAAGCGAGCTCGTGGTA 61.242 55.000 34.46 18.25 43.66 3.25
4807 15405 0.524392 CTCAAGCGAGCTCGTGGTAG 60.524 60.000 34.46 22.81 42.22 3.18
4808 15406 1.517257 CAAGCGAGCTCGTGGTAGG 60.517 63.158 34.46 16.06 42.22 3.18
4809 15407 1.977544 AAGCGAGCTCGTGGTAGGT 60.978 57.895 34.46 10.36 42.22 3.08
4810 15408 0.679002 AAGCGAGCTCGTGGTAGGTA 60.679 55.000 34.46 0.00 42.22 3.08
4811 15409 1.096386 AGCGAGCTCGTGGTAGGTAG 61.096 60.000 34.46 5.79 42.22 3.18
4812 15410 1.355916 CGAGCTCGTGGTAGGTAGC 59.644 63.158 27.79 0.00 35.16 3.58
4816 15414 1.945354 GCTCGTGGTAGGTAGCAGCA 61.945 60.000 0.00 0.00 35.05 4.41
4906 16234 1.398390 CGACCCTGCTTGTTGAATAGC 59.602 52.381 0.00 0.00 37.89 2.97
4918 16246 5.878332 TGTTGAATAGCGTCATGATTTGT 57.122 34.783 0.00 0.00 0.00 2.83
4921 16249 3.242381 TGAATAGCGTCATGATTTGTGCG 60.242 43.478 0.00 0.00 34.44 5.34
4924 16252 1.393539 AGCGTCATGATTTGTGCGTAC 59.606 47.619 0.00 0.00 34.44 3.67
4976 16304 2.260869 GGCAACACACGGAGCATGT 61.261 57.895 0.00 0.00 0.00 3.21
5011 16339 1.133025 GATTTGGCCACAACATCCTCG 59.867 52.381 3.88 0.00 36.06 4.63
5022 16350 0.608640 ACATCCTCGTCTTGGTGTCC 59.391 55.000 0.00 0.00 0.00 4.02
5032 16360 4.281435 TCGTCTTGGTGTCCATTTGTACTA 59.719 41.667 0.00 0.00 31.53 1.82
5077 16405 2.813908 GTGCCAAGGCTACGACCG 60.814 66.667 12.96 0.00 42.51 4.79
5103 16431 2.003301 GGCGAAAGGACTCTCAACATC 58.997 52.381 0.00 0.00 0.00 3.06
5114 16442 0.036164 CTCAACATCGGTGGTGGGAA 59.964 55.000 8.24 0.00 47.00 3.97
5154 16482 1.689273 GGTGCCAGAGAGGAATACGAT 59.311 52.381 0.00 0.00 41.22 3.73
5158 16486 3.068732 TGCCAGAGAGGAATACGATGAAG 59.931 47.826 0.00 0.00 41.22 3.02
5166 16494 6.338937 AGAGGAATACGATGAAGGTACAAAC 58.661 40.000 0.00 0.00 0.00 2.93
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
297 304 6.075762 TCATGTTCACCTTTGAGATTGTTG 57.924 37.500 0.00 0.00 31.71 3.33
382 389 2.289694 TGGTAGCTTGCTCTCACCTTTC 60.290 50.000 12.51 0.00 0.00 2.62
411 418 4.082625 TGGAGCAACAATTAGCATCAACTG 60.083 41.667 0.00 0.00 0.00 3.16
427 434 6.886459 AGCTTAAGATAAGAACAATGGAGCAA 59.114 34.615 6.67 0.00 0.00 3.91
464 471 7.392766 TCTATGGGTCTTATGAATCACCATT 57.607 36.000 6.20 0.00 38.18 3.16
466 473 6.386927 AGTTCTATGGGTCTTATGAATCACCA 59.613 38.462 0.00 0.00 0.00 4.17
481 488 3.742640 GCAACTAGAGCCAGTTCTATGGG 60.743 52.174 0.00 0.00 40.97 4.00
513 520 4.526970 TGGGCCTTCTCATAATCAAGTTC 58.473 43.478 4.53 0.00 0.00 3.01
532 539 3.573538 TCACCATTTCACTTTGTCATGGG 59.426 43.478 0.00 0.00 39.06 4.00
547 554 1.135315 GTGTGCGCATGAATCACCATT 60.135 47.619 15.91 0.00 0.00 3.16
615 4462 6.708054 ACTAGCATATCAAGTTAAGATGTGGC 59.292 38.462 0.00 0.00 35.79 5.01
635 4482 0.026803 GCGTGTATGCTTGCACTAGC 59.973 55.000 16.64 10.85 41.59 3.42
692 4551 4.099573 GCTCACCTGCTACTACATAAGGAA 59.900 45.833 0.00 0.00 0.00 3.36
693 4552 3.637229 GCTCACCTGCTACTACATAAGGA 59.363 47.826 0.00 0.00 0.00 3.36
805 4666 2.412870 TGCTATGATAAACCATCGGCG 58.587 47.619 0.00 0.00 36.33 6.46
899 4794 3.779183 TGTCCGTTGGGGGTTTATATACA 59.221 43.478 0.00 0.00 36.01 2.29
946 4843 4.794648 GCACACGCCCCTATGCCA 62.795 66.667 0.00 0.00 31.71 4.92
1459 5421 6.262273 ACGACACTTATTTTGAAACAGATGGT 59.738 34.615 0.00 0.00 0.00 3.55
1467 5429 8.460428 ACTAAAACCACGACACTTATTTTGAAA 58.540 29.630 0.00 0.00 0.00 2.69
1665 5771 1.160137 GCACGAGCATCAAGAACCTT 58.840 50.000 0.00 0.00 41.58 3.50
1857 5963 2.622962 ATCGTCGTGTCGGTCTGCA 61.623 57.895 0.00 0.00 0.00 4.41
2040 6146 2.045926 GCAACCTGGACCATCGCT 60.046 61.111 0.00 0.00 0.00 4.93
2148 6254 4.309950 GCCATACCCCCGGCGTAG 62.310 72.222 6.01 0.00 38.82 3.51
2403 6524 7.708322 CGAAGATATTCACTTTCATGAAGAGGA 59.292 37.037 8.41 4.74 41.76 3.71
2466 9272 9.088512 CCAACTCACAGTAAACTGAATATCTAC 57.911 37.037 16.74 0.00 46.59 2.59
2573 9426 2.228822 GTCAAATGGATTGTCGGTGCTT 59.771 45.455 0.00 0.00 40.11 3.91
2639 9492 3.452786 CCAGGGCGCTTCTCTCGA 61.453 66.667 7.64 0.00 0.00 4.04
2681 9534 1.026182 GGAGCATCACGTTCATGGCA 61.026 55.000 6.42 0.00 36.25 4.92
2771 9624 4.021925 GGGGCACGGAGAGCTTGT 62.022 66.667 0.00 0.00 45.31 3.16
2906 9759 3.364441 GCAAGCATGGTGCCGTCA 61.364 61.111 0.00 0.00 46.52 4.35
3023 9876 8.259411 TCACCTGTCTTACAAACAAGTTTAGTA 58.741 33.333 0.00 1.89 0.00 1.82
3035 9888 4.497291 ACCAAACTCACCTGTCTTACAA 57.503 40.909 0.00 0.00 0.00 2.41
3036 9889 4.497291 AACCAAACTCACCTGTCTTACA 57.503 40.909 0.00 0.00 0.00 2.41
3350 10203 2.743718 CCAGACCACCGAAGCACT 59.256 61.111 0.00 0.00 0.00 4.40
3444 10297 1.201647 CGTCGACATGTTGAGGTAGGT 59.798 52.381 22.41 0.00 0.00 3.08
3500 10353 0.608035 GCCACATGACCGGGAAGAAA 60.608 55.000 6.32 0.00 0.00 2.52
3614 10470 1.685765 CCCCGACCATCTCACCTCA 60.686 63.158 0.00 0.00 0.00 3.86
3778 10634 0.235926 GAACTTGTCGTTGGAGCAGC 59.764 55.000 0.00 0.00 35.56 5.25
3873 10729 2.113986 GCCTATTGCTGCCCCGAT 59.886 61.111 0.00 0.00 36.87 4.18
4130 10986 2.464459 GGTCAGCGATGCTTTCCCG 61.464 63.158 0.00 0.00 36.40 5.14
4277 11134 4.603131 ACACGGGGTACTTGAATAGAGTA 58.397 43.478 0.00 0.00 0.00 2.59
4278 11135 3.438183 ACACGGGGTACTTGAATAGAGT 58.562 45.455 0.00 0.00 0.00 3.24
4308 11165 7.716612 AGAAATTTCCAGAAACAATTCGAACT 58.283 30.769 14.61 0.00 40.63 3.01
4309 11166 7.930513 AGAAATTTCCAGAAACAATTCGAAC 57.069 32.000 14.61 0.00 40.63 3.95
4428 14404 1.379843 AAAAGGTAGCCATGGCCCG 60.380 57.895 33.14 0.00 43.17 6.13
4476 14467 4.399395 CGGAGAGCTGGCTGCCAA 62.399 66.667 23.51 6.74 44.23 4.52
4497 14488 4.873129 CGCTCCGTATGGCGCACT 62.873 66.667 15.97 0.00 46.62 4.40
4509 14500 2.079925 GGATATTCAGAATGGCGCTCC 58.920 52.381 7.64 0.00 36.16 4.70
4510 14501 1.728971 CGGATATTCAGAATGGCGCTC 59.271 52.381 7.64 0.00 36.16 5.03
4511 14502 1.344438 TCGGATATTCAGAATGGCGCT 59.656 47.619 7.64 0.00 36.16 5.92
4512 14503 1.795768 TCGGATATTCAGAATGGCGC 58.204 50.000 5.85 0.00 36.16 6.53
4553 14580 2.080654 AGGCAAGCAAACCAAGGTTA 57.919 45.000 4.68 0.00 37.35 2.85
4591 14622 4.031426 GTGTACTCTATTTCAACGAAGCCG 59.969 45.833 0.00 0.00 42.50 5.52
4592 14623 4.927425 TGTGTACTCTATTTCAACGAAGCC 59.073 41.667 0.00 0.00 0.00 4.35
4593 14624 5.634020 AGTGTGTACTCTATTTCAACGAAGC 59.366 40.000 0.00 0.00 28.79 3.86
4594 14625 8.021973 AGTAGTGTGTACTCTATTTCAACGAAG 58.978 37.037 0.00 0.00 38.36 3.79
4595 14626 7.879070 AGTAGTGTGTACTCTATTTCAACGAA 58.121 34.615 0.00 0.00 38.36 3.85
4596 14627 7.173735 TGAGTAGTGTGTACTCTATTTCAACGA 59.826 37.037 12.24 0.00 43.15 3.85
4597 14628 7.303261 TGAGTAGTGTGTACTCTATTTCAACG 58.697 38.462 12.24 0.00 43.15 4.10
4598 14629 9.640963 ATTGAGTAGTGTGTACTCTATTTCAAC 57.359 33.333 12.24 2.47 43.15 3.18
4599 14630 9.856488 GATTGAGTAGTGTGTACTCTATTTCAA 57.144 33.333 12.24 16.85 43.15 2.69
4600 14631 9.020731 TGATTGAGTAGTGTGTACTCTATTTCA 57.979 33.333 12.24 5.28 43.15 2.69
4601 14632 9.291664 GTGATTGAGTAGTGTGTACTCTATTTC 57.708 37.037 12.24 3.24 43.15 2.17
4602 14633 7.968956 CGTGATTGAGTAGTGTGTACTCTATTT 59.031 37.037 12.24 0.00 43.15 1.40
4603 14634 7.336176 TCGTGATTGAGTAGTGTGTACTCTATT 59.664 37.037 12.24 0.00 43.15 1.73
4604 14635 6.822170 TCGTGATTGAGTAGTGTGTACTCTAT 59.178 38.462 12.24 10.24 43.15 1.98
4605 14636 6.091849 GTCGTGATTGAGTAGTGTGTACTCTA 59.908 42.308 12.24 6.33 43.15 2.43
4606 14637 5.001874 TCGTGATTGAGTAGTGTGTACTCT 58.998 41.667 12.24 0.00 43.15 3.24
4607 14638 5.087397 GTCGTGATTGAGTAGTGTGTACTC 58.913 45.833 5.41 5.41 43.06 2.59
4608 14639 4.378149 CGTCGTGATTGAGTAGTGTGTACT 60.378 45.833 0.00 0.00 40.99 2.73
4609 14640 3.844657 CGTCGTGATTGAGTAGTGTGTAC 59.155 47.826 0.00 0.00 0.00 2.90
4610 14641 3.499537 ACGTCGTGATTGAGTAGTGTGTA 59.500 43.478 0.00 0.00 0.00 2.90
4658 14689 5.449107 TGTCTACTGTACTGAGGACAAAC 57.551 43.478 20.18 0.00 31.99 2.93
4662 14693 5.009811 AGTTGTTGTCTACTGTACTGAGGAC 59.990 44.000 6.77 12.90 0.00 3.85
4681 14712 1.554160 CTGCTCTGGATCCTGAGTTGT 59.446 52.381 35.59 0.00 41.89 3.32
4711 14742 4.153117 AGTCACGGTACTACGACTGTTTAG 59.847 45.833 9.73 0.00 36.78 1.85
4720 15318 0.455633 GGTGCAGTCACGGTACTACG 60.456 60.000 0.00 0.00 44.03 3.51
4721 15319 0.886563 AGGTGCAGTCACGGTACTAC 59.113 55.000 0.00 0.00 44.03 2.73
4722 15320 0.885879 CAGGTGCAGTCACGGTACTA 59.114 55.000 0.00 0.00 44.03 1.82
4756 15354 1.293763 TCATAGAGTGGTGGGGATCCA 59.706 52.381 15.23 0.00 41.58 3.41
4757 15355 2.103153 TCATAGAGTGGTGGGGATCC 57.897 55.000 1.92 1.92 0.00 3.36
4758 15356 2.289945 GCATCATAGAGTGGTGGGGATC 60.290 54.545 0.00 0.00 39.44 3.36
4759 15357 1.701847 GCATCATAGAGTGGTGGGGAT 59.298 52.381 0.00 0.00 39.44 3.85
4760 15358 1.131638 GCATCATAGAGTGGTGGGGA 58.868 55.000 0.00 0.00 39.44 4.81
4761 15359 0.839277 TGCATCATAGAGTGGTGGGG 59.161 55.000 0.00 0.00 39.44 4.96
4762 15360 2.882761 CAATGCATCATAGAGTGGTGGG 59.117 50.000 0.00 0.00 39.44 4.61
4763 15361 2.882761 CCAATGCATCATAGAGTGGTGG 59.117 50.000 0.00 0.00 39.44 4.61
4764 15362 3.562973 GTCCAATGCATCATAGAGTGGTG 59.437 47.826 0.00 0.00 42.09 4.17
4765 15363 3.200605 TGTCCAATGCATCATAGAGTGGT 59.799 43.478 0.00 0.00 0.00 4.16
4766 15364 3.562973 GTGTCCAATGCATCATAGAGTGG 59.437 47.826 0.00 1.78 0.00 4.00
4767 15365 4.449131 AGTGTCCAATGCATCATAGAGTG 58.551 43.478 0.00 0.00 0.00 3.51
4768 15366 4.162888 TGAGTGTCCAATGCATCATAGAGT 59.837 41.667 0.00 0.00 0.00 3.24
4769 15367 4.700700 TGAGTGTCCAATGCATCATAGAG 58.299 43.478 0.00 0.00 0.00 2.43
4770 15368 4.758773 TGAGTGTCCAATGCATCATAGA 57.241 40.909 0.00 0.00 0.00 1.98
4771 15369 4.261072 GCTTGAGTGTCCAATGCATCATAG 60.261 45.833 0.00 0.00 0.00 2.23
4772 15370 3.628942 GCTTGAGTGTCCAATGCATCATA 59.371 43.478 0.00 0.00 0.00 2.15
4773 15371 2.426024 GCTTGAGTGTCCAATGCATCAT 59.574 45.455 0.00 0.00 0.00 2.45
4774 15372 1.814394 GCTTGAGTGTCCAATGCATCA 59.186 47.619 0.00 0.00 0.00 3.07
4775 15373 1.202110 CGCTTGAGTGTCCAATGCATC 60.202 52.381 0.00 0.00 0.00 3.91
4776 15374 0.806868 CGCTTGAGTGTCCAATGCAT 59.193 50.000 0.00 0.00 0.00 3.96
4777 15375 0.250252 TCGCTTGAGTGTCCAATGCA 60.250 50.000 0.00 0.00 0.00 3.96
4778 15376 0.445436 CTCGCTTGAGTGTCCAATGC 59.555 55.000 0.00 0.00 34.89 3.56
4779 15377 0.445436 GCTCGCTTGAGTGTCCAATG 59.555 55.000 0.00 0.00 42.01 2.82
4780 15378 0.322975 AGCTCGCTTGAGTGTCCAAT 59.677 50.000 0.00 0.00 42.01 3.16
4781 15379 0.319900 GAGCTCGCTTGAGTGTCCAA 60.320 55.000 0.00 0.00 42.01 3.53
4782 15380 1.290324 GAGCTCGCTTGAGTGTCCA 59.710 57.895 0.00 0.00 42.01 4.02
4783 15381 1.803519 CGAGCTCGCTTGAGTGTCC 60.804 63.158 25.07 0.00 42.01 4.02
4784 15382 1.081108 ACGAGCTCGCTTGAGTGTC 60.081 57.895 34.83 0.00 44.43 3.67
4785 15383 1.372251 CACGAGCTCGCTTGAGTGT 60.372 57.895 34.83 11.05 44.43 3.55
4786 15384 2.091112 CCACGAGCTCGCTTGAGTG 61.091 63.158 34.83 23.22 44.43 3.51
4787 15385 1.241990 TACCACGAGCTCGCTTGAGT 61.242 55.000 34.83 24.57 44.43 3.41
4788 15386 0.524392 CTACCACGAGCTCGCTTGAG 60.524 60.000 34.83 22.34 44.43 3.02
4789 15387 1.506718 CTACCACGAGCTCGCTTGA 59.493 57.895 34.83 17.39 44.43 3.02
4790 15388 1.517257 CCTACCACGAGCTCGCTTG 60.517 63.158 34.83 25.35 44.43 4.01
4791 15389 0.679002 TACCTACCACGAGCTCGCTT 60.679 55.000 34.83 21.18 44.43 4.68
4792 15390 1.077930 TACCTACCACGAGCTCGCT 60.078 57.895 34.83 19.51 44.43 4.93
4793 15391 1.355916 CTACCTACCACGAGCTCGC 59.644 63.158 34.83 0.00 44.43 5.03
4794 15392 1.355916 GCTACCTACCACGAGCTCG 59.644 63.158 33.45 33.45 46.33 5.03
4795 15393 0.382515 CTGCTACCTACCACGAGCTC 59.617 60.000 2.73 2.73 35.89 4.09
4796 15394 1.668101 GCTGCTACCTACCACGAGCT 61.668 60.000 0.00 0.00 35.89 4.09
4797 15395 1.227002 GCTGCTACCTACCACGAGC 60.227 63.158 0.00 0.00 35.43 5.03
4798 15396 0.530744 TTGCTGCTACCTACCACGAG 59.469 55.000 0.00 0.00 0.00 4.18
4799 15397 0.530744 CTTGCTGCTACCTACCACGA 59.469 55.000 0.00 0.00 0.00 4.35
4800 15398 1.084370 GCTTGCTGCTACCTACCACG 61.084 60.000 0.00 0.00 38.95 4.94
4801 15399 0.744771 GGCTTGCTGCTACCTACCAC 60.745 60.000 0.00 0.00 42.39 4.16
4802 15400 1.198094 TGGCTTGCTGCTACCTACCA 61.198 55.000 0.00 0.00 42.39 3.25
4803 15401 0.181350 ATGGCTTGCTGCTACCTACC 59.819 55.000 0.00 0.00 42.39 3.18
4804 15402 2.044123 AATGGCTTGCTGCTACCTAC 57.956 50.000 0.00 0.00 42.39 3.18
4805 15403 3.924114 TTAATGGCTTGCTGCTACCTA 57.076 42.857 0.00 0.00 42.39 3.08
4806 15404 2.806945 TTAATGGCTTGCTGCTACCT 57.193 45.000 0.00 0.00 42.39 3.08
4807 15405 4.363138 GAAATTAATGGCTTGCTGCTACC 58.637 43.478 0.00 0.00 42.39 3.18
4808 15406 4.142182 TGGAAATTAATGGCTTGCTGCTAC 60.142 41.667 0.00 0.00 42.39 3.58
4809 15407 4.022603 TGGAAATTAATGGCTTGCTGCTA 58.977 39.130 0.00 0.00 42.39 3.49
4810 15408 2.833338 TGGAAATTAATGGCTTGCTGCT 59.167 40.909 0.00 0.00 42.39 4.24
4811 15409 3.249986 TGGAAATTAATGGCTTGCTGC 57.750 42.857 0.00 0.00 41.94 5.25
4812 15410 4.505191 CGAATGGAAATTAATGGCTTGCTG 59.495 41.667 0.00 0.00 0.00 4.41
4816 15414 4.058721 GCCGAATGGAAATTAATGGCTT 57.941 40.909 2.74 0.00 38.22 4.35
4866 15464 5.512573 TCGCACGTCGAATGTTATAAAAA 57.487 34.783 0.00 0.00 45.36 1.94
4880 15478 3.414700 CAAGCAGGGTCGCACGTC 61.415 66.667 0.00 0.00 0.00 4.34
4882 15480 2.972505 AACAAGCAGGGTCGCACG 60.973 61.111 0.00 0.00 0.00 5.34
4888 16216 1.271379 ACGCTATTCAACAAGCAGGGT 60.271 47.619 0.00 0.00 38.70 4.34
4906 16234 1.846642 GCGTACGCACAAATCATGACG 60.847 52.381 33.90 0.00 41.49 4.35
4921 16249 2.175621 GGCGTATGGGGTTGCGTAC 61.176 63.158 0.00 0.00 0.00 3.67
4924 16252 3.202001 CTGGCGTATGGGGTTGCG 61.202 66.667 0.00 0.00 0.00 4.85
4930 16258 3.289834 GCATGCCTGGCGTATGGG 61.290 66.667 14.07 2.10 35.28 4.00
4954 16282 2.740714 GCTCCGTGTGTTGCCGATC 61.741 63.158 0.00 0.00 0.00 3.69
4965 16293 4.799473 CGCGCAACATGCTCCGTG 62.799 66.667 8.75 0.00 42.25 4.94
4993 16321 0.179004 ACGAGGATGTTGTGGCCAAA 60.179 50.000 7.24 0.00 30.94 3.28
5011 16339 6.072673 CCTTTAGTACAAATGGACACCAAGAC 60.073 42.308 0.00 0.00 36.95 3.01
5022 16350 5.710099 TCAAGCTTCCCCTTTAGTACAAATG 59.290 40.000 0.00 0.00 0.00 2.32
5077 16405 4.083862 AGTCCTTTCGCCCGCCTC 62.084 66.667 0.00 0.00 0.00 4.70
5084 16412 1.656095 CGATGTTGAGAGTCCTTTCGC 59.344 52.381 0.00 0.00 0.00 4.70
5103 16431 3.818121 TTCTGCGTTCCCACCACCG 62.818 63.158 0.00 0.00 0.00 4.94


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.