Multiple sequence alignment - TraesCS2B01G625200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G625200 chr2B 100.000 5638 0 0 1 5638 798127223 798132860 0.000000e+00 10412.0
1 TraesCS2B01G625200 chr2B 86.172 3934 440 57 891 4785 784188486 784192354 0.000000e+00 4156.0
2 TraesCS2B01G625200 chr2D 94.191 4889 181 28 779 5638 638723897 638728711 0.000000e+00 7360.0
3 TraesCS2B01G625200 chr2D 88.716 4635 391 49 1048 5638 638804309 638808855 0.000000e+00 5541.0
4 TraesCS2B01G625200 chr2D 88.542 864 60 16 1 837 638723048 638723899 0.000000e+00 1011.0
5 TraesCS2B01G625200 chr2A 87.819 3645 388 30 1062 4688 764309000 764312606 0.000000e+00 4220.0
6 TraesCS2B01G625200 chr2A 86.728 3383 405 26 1370 4746 764256506 764259850 0.000000e+00 3720.0
7 TraesCS2B01G625200 chr2A 82.507 343 39 10 1048 1378 764240293 764240626 1.200000e-71 281.0
8 TraesCS2B01G625200 chr7D 80.935 3551 586 57 1129 4645 460279814 460283307 0.000000e+00 2723.0
9 TraesCS2B01G625200 chr7D 78.772 2996 574 40 1129 4105 459752708 459749756 0.000000e+00 1953.0
10 TraesCS2B01G625200 chr7D 78.452 2998 585 32 1130 4105 459790135 459787177 0.000000e+00 1901.0
11 TraesCS2B01G625200 chr7D 80.237 1690 276 39 2964 4639 460108949 460110594 0.000000e+00 1218.0
12 TraesCS2B01G625200 chr7A 80.596 3556 595 60 1129 4648 539325879 539322383 0.000000e+00 2656.0
13 TraesCS2B01G625200 chr7A 77.388 2596 503 60 2082 4651 539448612 539446075 0.000000e+00 1465.0
14 TraesCS2B01G625200 chr7A 81.020 706 99 22 3942 4639 539403682 539403004 3.870000e-146 529.0
15 TraesCS2B01G625200 chr7A 82.812 128 10 8 3977 4102 539849422 539849539 2.780000e-18 104.0
16 TraesCS2B01G625200 chr7B 81.231 2989 503 33 1129 4100 482684460 482687407 0.000000e+00 2359.0
17 TraesCS2B01G625200 chr7B 78.544 2843 568 26 1269 4105 482078227 482075421 0.000000e+00 1832.0
18 TraesCS2B01G625200 chr6B 97.059 34 1 0 5587 5620 207104477 207104444 2.190000e-04 58.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G625200 chr2B 798127223 798132860 5637 False 10412.0 10412 100.0000 1 5638 1 chr2B.!!$F2 5637
1 TraesCS2B01G625200 chr2B 784188486 784192354 3868 False 4156.0 4156 86.1720 891 4785 1 chr2B.!!$F1 3894
2 TraesCS2B01G625200 chr2D 638804309 638808855 4546 False 5541.0 5541 88.7160 1048 5638 1 chr2D.!!$F1 4590
3 TraesCS2B01G625200 chr2D 638723048 638728711 5663 False 4185.5 7360 91.3665 1 5638 2 chr2D.!!$F2 5637
4 TraesCS2B01G625200 chr2A 764309000 764312606 3606 False 4220.0 4220 87.8190 1062 4688 1 chr2A.!!$F3 3626
5 TraesCS2B01G625200 chr2A 764256506 764259850 3344 False 3720.0 3720 86.7280 1370 4746 1 chr2A.!!$F2 3376
6 TraesCS2B01G625200 chr7D 460279814 460283307 3493 False 2723.0 2723 80.9350 1129 4645 1 chr7D.!!$F2 3516
7 TraesCS2B01G625200 chr7D 459749756 459752708 2952 True 1953.0 1953 78.7720 1129 4105 1 chr7D.!!$R1 2976
8 TraesCS2B01G625200 chr7D 459787177 459790135 2958 True 1901.0 1901 78.4520 1130 4105 1 chr7D.!!$R2 2975
9 TraesCS2B01G625200 chr7D 460108949 460110594 1645 False 1218.0 1218 80.2370 2964 4639 1 chr7D.!!$F1 1675
10 TraesCS2B01G625200 chr7A 539322383 539325879 3496 True 2656.0 2656 80.5960 1129 4648 1 chr7A.!!$R1 3519
11 TraesCS2B01G625200 chr7A 539446075 539448612 2537 True 1465.0 1465 77.3880 2082 4651 1 chr7A.!!$R3 2569
12 TraesCS2B01G625200 chr7A 539403004 539403682 678 True 529.0 529 81.0200 3942 4639 1 chr7A.!!$R2 697
13 TraesCS2B01G625200 chr7B 482684460 482687407 2947 False 2359.0 2359 81.2310 1129 4100 1 chr7B.!!$F1 2971
14 TraesCS2B01G625200 chr7B 482075421 482078227 2806 True 1832.0 1832 78.5440 1269 4105 1 chr7B.!!$R1 2836

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
372 395 0.609957 TCAGGGCCTGTGAGCAAATG 60.610 55.0 31.6 4.5 32.61 2.32 F
1057 1143 0.456221 CGGTTCCTCGCAGTCACTAT 59.544 55.0 0.0 0.0 0.00 2.12 F
1404 1502 0.609131 CAATCCCGGCTGAACTTGGT 60.609 55.0 0.0 0.0 0.00 3.67 F
3131 3237 1.305201 TCTCAAAACAACCTGTCCGC 58.695 50.0 0.0 0.0 0.00 5.54 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1227 1316 2.017049 GACCAAGTGCAGAACTGTTGT 58.983 47.619 0.00 0.00 39.81 3.32 R
2382 2488 1.309950 CTCCTGCCTCGAGACGATTA 58.690 55.000 15.71 0.00 34.61 1.75 R
3188 3294 1.003718 GGTCCCTCGAGGTTGTTGG 60.004 63.158 29.25 13.41 36.75 3.77 R
5104 5252 0.650512 GCAAAGCAGCGTCGCTATAA 59.349 50.000 21.25 0.00 42.89 0.98 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
39 40 6.551601 CCATAGTCTAGAACCAGTACCATTCT 59.448 42.308 0.00 8.45 36.64 2.40
58 59 2.766263 TCTTATCAGCAGATCGGTGGTT 59.234 45.455 13.91 7.28 43.59 3.67
59 60 2.890808 TATCAGCAGATCGGTGGTTC 57.109 50.000 13.91 0.00 43.59 3.62
79 80 2.041976 CAGGGAGCGATCGGTATGT 58.958 57.895 21.30 4.30 0.00 2.29
142 143 4.286910 CTGCAAGTATACGAGAGAAGAGC 58.713 47.826 0.00 0.00 0.00 4.09
161 162 9.171877 AGAAGAGCAGAAATAAAGAGGTAATTG 57.828 33.333 0.00 0.00 0.00 2.32
170 171 7.701539 AATAAAGAGGTAATTGTGTGCATCA 57.298 32.000 0.00 0.00 0.00 3.07
201 202 4.394300 TGTTACTAGACAGAGAACTACGCC 59.606 45.833 0.00 0.00 0.00 5.68
208 209 3.220940 ACAGAGAACTACGCCCCTATAC 58.779 50.000 0.00 0.00 0.00 1.47
229 231 4.575885 ACTGCGATTGGTTTAGAAAGCTA 58.424 39.130 5.84 0.00 37.31 3.32
230 232 5.001232 ACTGCGATTGGTTTAGAAAGCTAA 58.999 37.500 5.84 0.00 37.31 3.09
231 233 5.122396 ACTGCGATTGGTTTAGAAAGCTAAG 59.878 40.000 5.84 0.00 37.84 2.18
232 234 5.242434 TGCGATTGGTTTAGAAAGCTAAGA 58.758 37.500 5.84 0.00 37.84 2.10
251 274 7.822822 AGCTAAGAAACATGAATACTTACCGTT 59.177 33.333 0.00 0.00 0.00 4.44
255 278 9.715121 AAGAAACATGAATACTTACCGTTAGAA 57.285 29.630 0.00 0.00 0.00 2.10
263 286 8.149647 TGAATACTTACCGTTAGAAGGTGAAAA 58.850 33.333 0.00 0.00 42.83 2.29
264 287 8.543862 AATACTTACCGTTAGAAGGTGAAAAG 57.456 34.615 0.00 0.00 42.83 2.27
271 294 1.228459 GAAGGTGAAAAGGGGCCGT 60.228 57.895 0.00 0.00 0.00 5.68
293 316 1.700042 GGGCACTGGGAGATACAGGG 61.700 65.000 0.00 0.00 42.24 4.45
295 318 1.700042 GCACTGGGAGATACAGGGGG 61.700 65.000 0.00 0.00 39.73 5.40
344 367 1.407437 GGAGTGGTTATGCTCACCTGG 60.407 57.143 0.00 0.00 35.07 4.45
360 383 1.824852 CCTGGTAAAAACATCAGGGCC 59.175 52.381 0.00 0.00 42.12 5.80
366 389 1.915141 AAAACATCAGGGCCTGTGAG 58.085 50.000 31.60 23.25 32.61 3.51
372 395 0.609957 TCAGGGCCTGTGAGCAAATG 60.610 55.000 31.60 4.50 32.61 2.32
376 399 1.067354 GGGCCTGTGAGCAAATGAAAG 60.067 52.381 0.84 0.00 0.00 2.62
477 500 3.329889 TGGCTGCGGGATTGACCT 61.330 61.111 0.00 0.00 38.98 3.85
517 540 1.738350 CAGGCAGAAGCAGATCACAAG 59.262 52.381 0.00 0.00 44.61 3.16
554 577 5.389859 TGGTAAGCAACTGAATCAAATGG 57.610 39.130 0.00 0.00 0.00 3.16
583 609 6.258947 GTGCTAGGTAACATTCTTCCTGAATC 59.741 42.308 0.00 0.00 43.00 2.52
594 620 2.099141 TCCTGAATCGCCTTTGTGAG 57.901 50.000 0.00 0.00 33.79 3.51
608 634 3.350219 TTGTGAGGGCAAATCCTAGTC 57.650 47.619 0.00 0.00 37.25 2.59
629 655 2.416547 CAGTTAGCACCAAGATGGAACG 59.583 50.000 2.85 0.00 40.96 3.95
633 659 2.795329 AGCACCAAGATGGAACGAAAT 58.205 42.857 2.85 0.00 40.96 2.17
644 670 0.736053 GAACGAAATATTGGCCGGCA 59.264 50.000 30.85 9.36 0.00 5.69
660 686 3.213506 CCGGCATACTGGAAATCATCAA 58.786 45.455 0.00 0.00 46.41 2.57
672 698 8.497745 ACTGGAAATCATCAACACCTATCTATT 58.502 33.333 0.00 0.00 0.00 1.73
723 749 7.873719 TTGAAGTGAACTTTGACTGGAAATA 57.126 32.000 0.00 0.00 36.11 1.40
744 771 1.697982 GTGGAAGCGGGTATATTCCCT 59.302 52.381 14.90 0.00 44.95 4.20
747 774 1.697982 GAAGCGGGTATATTCCCTGGT 59.302 52.381 14.90 10.90 44.95 4.00
761 788 3.609853 TCCCTGGTTTCTTCATTGATCG 58.390 45.455 0.00 0.00 0.00 3.69
762 789 3.263170 TCCCTGGTTTCTTCATTGATCGA 59.737 43.478 0.00 0.00 0.00 3.59
767 794 5.733676 TGGTTTCTTCATTGATCGAGATGA 58.266 37.500 5.18 5.18 0.00 2.92
770 797 6.259608 GGTTTCTTCATTGATCGAGATGACAT 59.740 38.462 8.03 0.00 32.36 3.06
773 800 8.530269 TTCTTCATTGATCGAGATGACATATG 57.470 34.615 0.00 0.00 32.36 1.78
774 801 6.589139 TCTTCATTGATCGAGATGACATATGC 59.411 38.462 1.58 0.00 32.36 3.14
775 802 5.786311 TCATTGATCGAGATGACATATGCA 58.214 37.500 1.58 2.39 0.00 3.96
782 809 2.551459 GAGATGACATATGCACTTGGCC 59.449 50.000 1.58 0.00 43.89 5.36
799 826 2.955660 TGGCCGTGTCTTTCAAAGAAAT 59.044 40.909 0.00 0.00 39.67 2.17
801 828 4.215399 TGGCCGTGTCTTTCAAAGAAATAG 59.785 41.667 0.00 0.00 39.67 1.73
811 838 9.871299 GTCTTTCAAAGAAATAGTCAAAGTCTC 57.129 33.333 0.00 0.00 39.67 3.36
817 844 7.992754 AAGAAATAGTCAAAGTCTCTGCATT 57.007 32.000 0.00 0.00 0.00 3.56
821 848 9.587772 GAAATAGTCAAAGTCTCTGCATTACTA 57.412 33.333 0.00 0.00 0.00 1.82
822 849 9.593134 AAATAGTCAAAGTCTCTGCATTACTAG 57.407 33.333 0.00 0.00 0.00 2.57
827 854 7.062839 GTCAAAGTCTCTGCATTACTAGACAAG 59.937 40.741 15.86 7.72 40.65 3.16
865 946 5.536554 GTAGTTGCAGTACTACTACGACA 57.463 43.478 17.71 0.00 44.06 4.35
873 954 6.873605 TGCAGTACTACTACGACAACTACTAA 59.126 38.462 0.00 0.00 0.00 2.24
938 1024 5.804639 TGCCCATCAGCGTTCTATAAATAT 58.195 37.500 0.00 0.00 34.65 1.28
1057 1143 0.456221 CGGTTCCTCGCAGTCACTAT 59.544 55.000 0.00 0.00 0.00 2.12
1116 1205 5.516044 TCATTAGTAGGTTCCACAGCTCTA 58.484 41.667 0.00 0.00 34.13 2.43
1227 1316 3.118408 CGTGGAAGGTTGATGATTCCCTA 60.118 47.826 1.02 0.00 41.54 3.53
1404 1502 0.609131 CAATCCCGGCTGAACTTGGT 60.609 55.000 0.00 0.00 0.00 3.67
1407 1505 1.672356 CCCGGCTGAACTTGGTCAG 60.672 63.158 11.03 11.03 46.58 3.51
1555 1653 2.231235 CCACCAAACCTAAGCCAATGTC 59.769 50.000 0.00 0.00 0.00 3.06
1926 2031 1.667236 CGAATATTGCTGGCTCACCA 58.333 50.000 0.00 0.00 46.51 4.17
2382 2488 2.091775 AGTCTACCTGGATCTAGGCGTT 60.092 50.000 24.13 8.41 41.75 4.84
2402 2508 1.388065 AATCGTCTCGAGGCAGGAGG 61.388 60.000 18.62 0.00 39.91 4.30
2635 2741 3.961408 TCTGCTTAGTGGAAGTATCCCTC 59.039 47.826 0.00 0.00 45.95 4.30
2636 2742 2.693591 TGCTTAGTGGAAGTATCCCTCG 59.306 50.000 0.00 0.00 45.95 4.63
2691 2797 6.183360 CCCTAAGCTTATCCCAGAACAAATTG 60.183 42.308 6.64 0.00 0.00 2.32
2862 2968 3.006247 CAGCTTACCAAAGGAGCTCTTC 58.994 50.000 14.64 0.00 44.44 2.87
3124 3230 6.599244 TGTGATGGATCTATCTCAAAACAACC 59.401 38.462 18.13 0.00 30.26 3.77
3131 3237 1.305201 TCTCAAAACAACCTGTCCGC 58.695 50.000 0.00 0.00 0.00 5.54
3188 3294 6.207417 TCCATGAAACTTCTCAATTTGTCCTC 59.793 38.462 0.00 0.00 0.00 3.71
3315 3421 0.961019 TGCCACTTTGCAATGGAGTC 59.039 50.000 20.88 5.89 38.56 3.36
3843 3955 2.773487 CCGTTGTGTATGGGTTCAAGA 58.227 47.619 0.00 0.00 0.00 3.02
3847 3959 5.413213 CCGTTGTGTATGGGTTCAAGAATAA 59.587 40.000 0.00 0.00 0.00 1.40
3991 4103 1.269723 GTGACTTTGGGTTGGCTAAGC 59.730 52.381 3.02 3.02 0.00 3.09
4020 4132 7.020827 ACATGGTTATTCTTCTTCTTCTGGA 57.979 36.000 0.00 0.00 0.00 3.86
4105 4221 6.938030 ACCAGGTAACGATTTCTCAATACAAA 59.062 34.615 0.00 0.00 46.39 2.83
4107 4223 7.749126 CCAGGTAACGATTTCTCAATACAAAAC 59.251 37.037 0.00 0.00 46.39 2.43
4145 4281 9.098355 TGAAAATGTCTCATATGCAAGTAGTAC 57.902 33.333 0.00 0.00 0.00 2.73
4147 4283 8.654230 AAATGTCTCATATGCAAGTAGTACAG 57.346 34.615 2.52 0.00 0.00 2.74
4286 4428 3.532542 GGAGGGTGATGTTTACAGCTAC 58.467 50.000 0.00 0.00 36.25 3.58
4325 4467 4.796231 CTCACCGGGAAGCGTCCG 62.796 72.222 12.79 10.23 46.04 4.79
4505 4647 6.880484 TCATCAAATTGCTGCTGGAATAATT 58.120 32.000 10.63 0.39 33.01 1.40
4728 4871 9.668497 ATGACCTATGACTAGTTTTTCTTTACC 57.332 33.333 0.00 0.00 0.00 2.85
4781 4929 9.270640 GGATGCTATCTATGTTATGAATCATCC 57.729 37.037 0.00 0.00 38.51 3.51
4785 4933 9.531942 GCTATCTATGTTATGAATCATCCTCTG 57.468 37.037 0.00 0.00 0.00 3.35
4910 5058 8.673711 TGAGGATTCAGGTACATTTTATTTTCG 58.326 33.333 0.00 0.00 0.00 3.46
4938 5086 3.127030 GCTGTTCTTTGCTTACGCCTAAT 59.873 43.478 0.00 0.00 34.43 1.73
4939 5087 4.331717 GCTGTTCTTTGCTTACGCCTAATA 59.668 41.667 0.00 0.00 34.43 0.98
4940 5088 5.007724 GCTGTTCTTTGCTTACGCCTAATAT 59.992 40.000 0.00 0.00 34.43 1.28
4941 5089 6.202188 GCTGTTCTTTGCTTACGCCTAATATA 59.798 38.462 0.00 0.00 34.43 0.86
4943 5091 8.495361 TGTTCTTTGCTTACGCCTAATATAAA 57.505 30.769 0.00 0.00 34.43 1.40
4944 5092 8.392612 TGTTCTTTGCTTACGCCTAATATAAAC 58.607 33.333 0.00 0.00 34.43 2.01
4945 5093 8.610035 GTTCTTTGCTTACGCCTAATATAAACT 58.390 33.333 0.00 0.00 34.43 2.66
4946 5094 8.138365 TCTTTGCTTACGCCTAATATAAACTG 57.862 34.615 0.00 0.00 34.43 3.16
4948 5096 5.920903 TGCTTACGCCTAATATAAACTGGT 58.079 37.500 0.00 0.00 34.43 4.00
4949 5097 5.987347 TGCTTACGCCTAATATAAACTGGTC 59.013 40.000 0.00 0.00 34.43 4.02
4950 5098 6.183360 TGCTTACGCCTAATATAAACTGGTCT 60.183 38.462 0.00 0.00 34.43 3.85
4951 5099 6.704937 GCTTACGCCTAATATAAACTGGTCTT 59.295 38.462 0.00 0.00 0.00 3.01
4952 5100 7.226128 GCTTACGCCTAATATAAACTGGTCTTT 59.774 37.037 0.00 0.00 0.00 2.52
4953 5101 9.754382 CTTACGCCTAATATAAACTGGTCTTTA 57.246 33.333 0.00 0.00 0.00 1.85
4955 5103 8.658499 ACGCCTAATATAAACTGGTCTTTAAG 57.342 34.615 0.00 0.00 0.00 1.85
4956 5104 7.713942 ACGCCTAATATAAACTGGTCTTTAAGG 59.286 37.037 0.00 0.00 0.00 2.69
4957 5105 7.713942 CGCCTAATATAAACTGGTCTTTAAGGT 59.286 37.037 0.00 0.00 0.00 3.50
4958 5106 9.404848 GCCTAATATAAACTGGTCTTTAAGGTT 57.595 33.333 0.00 0.00 0.00 3.50
4964 5112 6.401047 AAACTGGTCTTTAAGGTTTAAGCC 57.599 37.500 0.00 0.00 0.00 4.35
4965 5113 5.320488 ACTGGTCTTTAAGGTTTAAGCCT 57.680 39.130 4.80 4.80 41.41 4.58
4966 5114 6.443995 ACTGGTCTTTAAGGTTTAAGCCTA 57.556 37.500 11.70 0.00 38.03 3.93
4967 5115 6.844829 ACTGGTCTTTAAGGTTTAAGCCTAA 58.155 36.000 11.70 2.46 38.03 2.69
4968 5116 7.292319 ACTGGTCTTTAAGGTTTAAGCCTAAA 58.708 34.615 11.70 10.84 38.03 1.85
4969 5117 7.948447 ACTGGTCTTTAAGGTTTAAGCCTAAAT 59.052 33.333 11.70 0.00 38.03 1.40
4970 5118 9.457436 CTGGTCTTTAAGGTTTAAGCCTAAATA 57.543 33.333 11.70 0.00 38.03 1.40
4971 5119 9.984590 TGGTCTTTAAGGTTTAAGCCTAAATAT 57.015 29.630 11.70 0.00 38.03 1.28
5026 5174 4.552166 AACTTGCACATCACACTGTTAC 57.448 40.909 0.00 0.00 0.00 2.50
5052 5200 8.392612 CACTTGAAAGTTGAATGAAAAGCATTT 58.607 29.630 0.00 0.00 41.36 2.32
5055 5203 6.482973 TGAAAGTTGAATGAAAAGCATTTCCC 59.517 34.615 11.60 2.56 46.90 3.97
5056 5204 5.813513 AGTTGAATGAAAAGCATTTCCCT 57.186 34.783 11.60 0.00 46.90 4.20
5057 5205 5.544650 AGTTGAATGAAAAGCATTTCCCTG 58.455 37.500 11.60 0.00 46.90 4.45
5058 5206 5.305128 AGTTGAATGAAAAGCATTTCCCTGA 59.695 36.000 11.60 0.00 46.90 3.86
5059 5207 5.804944 TGAATGAAAAGCATTTCCCTGAA 57.195 34.783 11.60 0.00 46.90 3.02
5101 5249 2.439507 AGCATACCGGTGATGGAGAATT 59.560 45.455 19.93 0.00 0.00 2.17
5102 5250 3.646162 AGCATACCGGTGATGGAGAATTA 59.354 43.478 19.93 0.00 0.00 1.40
5103 5251 4.102524 AGCATACCGGTGATGGAGAATTAA 59.897 41.667 19.93 0.00 0.00 1.40
5104 5252 5.003804 GCATACCGGTGATGGAGAATTAAT 58.996 41.667 19.93 0.00 0.00 1.40
5105 5253 5.473504 GCATACCGGTGATGGAGAATTAATT 59.526 40.000 19.93 0.00 0.00 1.40
5121 5269 5.924475 ATTAATTATAGCGACGCTGCTTT 57.076 34.783 31.69 20.01 44.46 3.51
5150 5298 4.560128 GGAAGCAGCGATCTCATAATACA 58.440 43.478 0.00 0.00 0.00 2.29
5151 5299 4.624882 GGAAGCAGCGATCTCATAATACAG 59.375 45.833 0.00 0.00 0.00 2.74
5152 5300 3.583806 AGCAGCGATCTCATAATACAGC 58.416 45.455 0.00 0.00 0.00 4.40
5153 5301 3.257873 AGCAGCGATCTCATAATACAGCT 59.742 43.478 0.00 0.00 0.00 4.24
5167 5315 0.528470 ACAGCTAGCTCCTCGAACAC 59.472 55.000 16.15 0.00 0.00 3.32
5224 5372 3.244112 GGAAGACGAGGAGAAACCAAAGA 60.244 47.826 0.00 0.00 42.04 2.52
5233 5381 4.412528 AGGAGAAACCAAAGAACACCTACT 59.587 41.667 0.00 0.00 42.04 2.57
5234 5382 4.515567 GGAGAAACCAAAGAACACCTACTG 59.484 45.833 0.00 0.00 38.79 2.74
5236 5384 5.751586 AGAAACCAAAGAACACCTACTGAA 58.248 37.500 0.00 0.00 0.00 3.02
5237 5385 5.589050 AGAAACCAAAGAACACCTACTGAAC 59.411 40.000 0.00 0.00 0.00 3.18
5238 5386 3.463944 ACCAAAGAACACCTACTGAACG 58.536 45.455 0.00 0.00 0.00 3.95
5239 5387 3.133362 ACCAAAGAACACCTACTGAACGA 59.867 43.478 0.00 0.00 0.00 3.85
5240 5388 4.124238 CCAAAGAACACCTACTGAACGAA 58.876 43.478 0.00 0.00 0.00 3.85
5241 5389 4.025145 CCAAAGAACACCTACTGAACGAAC 60.025 45.833 0.00 0.00 0.00 3.95
5242 5390 4.395959 AAGAACACCTACTGAACGAACA 57.604 40.909 0.00 0.00 0.00 3.18
5243 5391 3.978687 AGAACACCTACTGAACGAACAG 58.021 45.455 10.78 10.78 42.78 3.16
5270 5418 0.813610 CCCGACATTGCGCCTTCATA 60.814 55.000 4.18 0.00 0.00 2.15
5325 5473 0.620556 TTGAGGAAGGTCCAGATGGC 59.379 55.000 0.00 0.00 39.61 4.40
5327 5475 2.190578 GGAAGGTCCAGATGGCCG 59.809 66.667 0.00 0.00 36.28 6.13
5328 5476 2.190578 GAAGGTCCAGATGGCCGG 59.809 66.667 0.00 0.00 36.77 6.13
5329 5477 4.115199 AAGGTCCAGATGGCCGGC 62.115 66.667 21.18 21.18 36.77 6.13
5349 5497 0.031178 CAGCAAGGCCAACAACAGAC 59.969 55.000 5.01 0.00 0.00 3.51
5351 5499 0.675633 GCAAGGCCAACAACAGACAT 59.324 50.000 5.01 0.00 0.00 3.06
5361 5509 1.672356 AACAGACATGAGTGCGGCC 60.672 57.895 0.00 0.00 0.00 6.13
5406 5554 2.060980 CAGGACGGGAGGAGGAAGG 61.061 68.421 0.00 0.00 0.00 3.46
5431 5579 4.341487 TCCAAATTCGACAGTAGAGGAGA 58.659 43.478 0.00 0.00 0.00 3.71
5432 5580 4.399618 TCCAAATTCGACAGTAGAGGAGAG 59.600 45.833 0.00 0.00 0.00 3.20
5451 5599 1.357991 GGAGCAACGCTGAGAGAAGC 61.358 60.000 0.00 0.00 39.88 3.86
5454 5602 1.373497 CAACGCTGAGAGAAGCCGT 60.373 57.895 0.00 0.00 40.23 5.68
5458 5606 1.519719 GCTGAGAGAAGCCGTGGAT 59.480 57.895 0.00 0.00 37.20 3.41
5552 5721 0.896940 CCAACTTGTGCAGAGCCCAT 60.897 55.000 0.00 0.00 0.00 4.00
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
39 40 2.481276 CGAACCACCGATCTGCTGATAA 60.481 50.000 6.02 0.00 32.19 1.75
70 71 2.930826 CCCAAAGGCTACATACCGAT 57.069 50.000 0.00 0.00 0.00 4.18
90 91 5.811399 TTATCAAAATCGTAACAGGCCAG 57.189 39.130 5.01 0.00 0.00 4.85
129 130 7.392494 TCTTTATTTCTGCTCTTCTCTCGTA 57.608 36.000 0.00 0.00 0.00 3.43
130 131 6.274157 TCTTTATTTCTGCTCTTCTCTCGT 57.726 37.500 0.00 0.00 0.00 4.18
139 140 7.965107 CACACAATTACCTCTTTATTTCTGCTC 59.035 37.037 0.00 0.00 0.00 4.26
142 143 7.592938 TGCACACAATTACCTCTTTATTTCTG 58.407 34.615 0.00 0.00 0.00 3.02
170 171 7.449086 AGTTCTCTGTCTAGTAACAGTAAAGCT 59.551 37.037 10.47 4.00 45.57 3.74
181 182 3.539604 GGGCGTAGTTCTCTGTCTAGTA 58.460 50.000 0.00 0.00 0.00 1.82
186 187 1.760192 TAGGGGCGTAGTTCTCTGTC 58.240 55.000 0.00 0.00 0.00 3.51
199 200 0.396811 ACCAATCGCAGTATAGGGGC 59.603 55.000 0.00 0.00 0.00 5.80
201 202 5.209818 TCTAAACCAATCGCAGTATAGGG 57.790 43.478 0.00 0.00 0.00 3.53
208 209 5.351465 TCTTAGCTTTCTAAACCAATCGCAG 59.649 40.000 0.00 0.00 34.62 5.18
229 231 9.715121 TTCTAACGGTAAGTATTCATGTTTCTT 57.285 29.630 0.00 0.00 0.00 2.52
230 232 9.367444 CTTCTAACGGTAAGTATTCATGTTTCT 57.633 33.333 0.00 0.00 0.00 2.52
231 233 8.601476 CCTTCTAACGGTAAGTATTCATGTTTC 58.399 37.037 0.00 0.00 0.00 2.78
232 234 8.098912 ACCTTCTAACGGTAAGTATTCATGTTT 58.901 33.333 0.00 0.00 31.69 2.83
251 274 0.326927 CGGCCCCTTTTCACCTTCTA 59.673 55.000 0.00 0.00 0.00 2.10
255 278 2.434774 GACGGCCCCTTTTCACCT 59.565 61.111 0.00 0.00 0.00 4.00
271 294 1.760875 GTATCTCCCAGTGCCCGGA 60.761 63.158 0.73 0.00 0.00 5.14
293 316 2.670939 ACCGTATACTCTACCAACCCC 58.329 52.381 0.56 0.00 0.00 4.95
295 318 5.451103 GGAGAAACCGTATACTCTACCAACC 60.451 48.000 0.56 0.00 0.00 3.77
332 355 5.565509 TGATGTTTTTACCAGGTGAGCATA 58.434 37.500 0.76 0.00 0.00 3.14
333 356 4.406456 TGATGTTTTTACCAGGTGAGCAT 58.594 39.130 0.76 2.01 0.00 3.79
344 367 3.153919 TCACAGGCCCTGATGTTTTTAC 58.846 45.455 19.90 0.00 35.18 2.01
360 383 1.891150 AGGCCTTTCATTTGCTCACAG 59.109 47.619 0.00 0.00 0.00 3.66
366 389 3.756434 TGTAGTACAGGCCTTTCATTTGC 59.244 43.478 0.00 0.00 0.00 3.68
372 395 3.697619 ACCTTGTAGTACAGGCCTTTC 57.302 47.619 0.00 0.00 0.00 2.62
376 399 5.065235 TGTTTTAACCTTGTAGTACAGGCC 58.935 41.667 14.93 0.00 0.00 5.19
460 483 3.329889 AGGTCAATCCCGCAGCCA 61.330 61.111 0.00 0.00 36.75 4.75
517 540 3.428045 GCTTACCATGCTCATGTTGTTCC 60.428 47.826 8.81 0.00 37.11 3.62
554 577 4.095036 GGAAGAATGTTACCTAGCACTTGC 59.905 45.833 0.00 0.00 42.49 4.01
594 620 3.206964 GCTAACTGACTAGGATTTGCCC 58.793 50.000 0.00 0.00 37.37 5.36
601 627 3.774734 TCTTGGTGCTAACTGACTAGGA 58.225 45.455 0.00 0.00 0.00 2.94
608 634 2.416547 CGTTCCATCTTGGTGCTAACTG 59.583 50.000 0.00 0.00 39.03 3.16
629 655 2.228822 CCAGTATGCCGGCCAATATTTC 59.771 50.000 26.77 7.53 31.97 2.17
633 659 0.840617 TTCCAGTATGCCGGCCAATA 59.159 50.000 26.77 13.61 31.97 1.90
644 670 8.038862 AGATAGGTGTTGATGATTTCCAGTAT 57.961 34.615 0.00 0.00 0.00 2.12
691 717 7.594758 CAGTCAAAGTTCACTTCAAAGTTCAAA 59.405 33.333 0.00 0.00 37.08 2.69
692 718 7.083858 CAGTCAAAGTTCACTTCAAAGTTCAA 58.916 34.615 0.00 0.00 37.08 2.69
693 719 6.349280 CCAGTCAAAGTTCACTTCAAAGTTCA 60.349 38.462 0.00 0.00 37.08 3.18
694 720 6.030228 CCAGTCAAAGTTCACTTCAAAGTTC 58.970 40.000 0.00 0.00 37.08 3.01
695 721 5.710099 TCCAGTCAAAGTTCACTTCAAAGTT 59.290 36.000 0.00 0.00 37.08 2.66
696 722 5.253330 TCCAGTCAAAGTTCACTTCAAAGT 58.747 37.500 0.00 0.00 40.60 2.66
697 723 5.818136 TCCAGTCAAAGTTCACTTCAAAG 57.182 39.130 0.00 0.00 34.61 2.77
698 724 6.582677 TTTCCAGTCAAAGTTCACTTCAAA 57.417 33.333 0.00 0.00 34.61 2.69
723 749 1.697982 GGGAATATACCCGCTTCCACT 59.302 52.381 4.80 0.00 40.20 4.00
744 771 5.582269 GTCATCTCGATCAATGAAGAAACCA 59.418 40.000 6.80 0.00 33.89 3.67
747 774 8.985805 CATATGTCATCTCGATCAATGAAGAAA 58.014 33.333 6.80 0.00 33.89 2.52
761 788 2.551459 GGCCAAGTGCATATGTCATCTC 59.449 50.000 0.00 0.00 43.89 2.75
762 789 2.579873 GGCCAAGTGCATATGTCATCT 58.420 47.619 0.00 1.66 43.89 2.90
767 794 0.322456 ACACGGCCAAGTGCATATGT 60.322 50.000 10.38 0.00 45.45 2.29
770 797 0.036164 AAGACACGGCCAAGTGCATA 59.964 50.000 10.38 0.00 45.45 3.14
773 800 1.282875 GAAAGACACGGCCAAGTGC 59.717 57.895 10.38 4.37 45.45 4.40
774 801 1.021202 TTGAAAGACACGGCCAAGTG 58.979 50.000 2.24 6.37 46.83 3.16
775 802 1.676006 CTTTGAAAGACACGGCCAAGT 59.324 47.619 2.24 0.00 0.00 3.16
782 809 8.122952 ACTTTGACTATTTCTTTGAAAGACACG 58.877 33.333 7.21 0.00 37.23 4.49
799 826 7.393515 TGTCTAGTAATGCAGAGACTTTGACTA 59.606 37.037 19.54 5.91 39.27 2.59
801 828 6.390721 TGTCTAGTAATGCAGAGACTTTGAC 58.609 40.000 15.93 15.93 39.27 3.18
811 838 7.246311 CCATTCAAACTTGTCTAGTAATGCAG 58.754 38.462 0.00 0.00 35.54 4.41
817 844 6.816640 CGATTCCCATTCAAACTTGTCTAGTA 59.183 38.462 0.00 0.00 35.54 1.82
821 848 3.758554 CCGATTCCCATTCAAACTTGTCT 59.241 43.478 0.00 0.00 0.00 3.41
822 849 3.506067 ACCGATTCCCATTCAAACTTGTC 59.494 43.478 0.00 0.00 0.00 3.18
827 854 4.674362 GCAACTACCGATTCCCATTCAAAC 60.674 45.833 0.00 0.00 0.00 2.93
888 969 6.298361 ACTGCCAATGCTTGATGTACATATA 58.702 36.000 8.71 0.00 38.71 0.86
1057 1143 6.334237 AGAGAGGATAGGACAAGGATTAGAGA 59.666 42.308 0.00 0.00 0.00 3.10
1116 1205 0.901827 TAGCATCACCATGGTCGTGT 59.098 50.000 16.53 9.72 41.18 4.49
1143 1232 0.603065 GGCAACGAAGGGCTTGAAAT 59.397 50.000 0.00 0.00 32.57 2.17
1227 1316 2.017049 GACCAAGTGCAGAACTGTTGT 58.983 47.619 0.00 0.00 39.81 3.32
1404 1502 4.406972 AGATACTGCAACCTATTCAGCTGA 59.593 41.667 13.74 13.74 0.00 4.26
1407 1505 6.017852 GGTTAAGATACTGCAACCTATTCAGC 60.018 42.308 0.00 0.00 37.92 4.26
1555 1653 5.271625 CAAGTTCAGCTGCTGCATATTTAG 58.728 41.667 24.38 5.87 42.74 1.85
1926 2031 6.301486 TGATGCCAAGATAAGATACTGCAAT 58.699 36.000 0.00 0.00 0.00 3.56
1956 2061 2.231235 AGAAGGTATTGCGCCAAAAAGG 59.769 45.455 4.18 0.00 41.84 3.11
2382 2488 1.309950 CTCCTGCCTCGAGACGATTA 58.690 55.000 15.71 0.00 34.61 1.75
2402 2508 6.294010 GGTCAATGAGGTTAAGAAAGACCAAC 60.294 42.308 0.00 0.00 41.88 3.77
2635 2741 7.545362 AGTTATGAAGATTTCCAAGTGATCG 57.455 36.000 0.00 0.00 0.00 3.69
2636 2742 8.734386 ACAAGTTATGAAGATTTCCAAGTGATC 58.266 33.333 0.00 0.00 0.00 2.92
2862 2968 2.575532 TCTGCAAGGTTGGAAAGAGTG 58.424 47.619 0.00 0.00 0.00 3.51
3124 3230 1.372087 GCAGGGATTTCAGCGGACAG 61.372 60.000 0.00 0.00 0.00 3.51
3131 3237 3.424703 TCAAAGAAGGCAGGGATTTCAG 58.575 45.455 0.00 0.00 0.00 3.02
3188 3294 1.003718 GGTCCCTCGAGGTTGTTGG 60.004 63.158 29.25 13.41 36.75 3.77
3315 3421 4.386652 GTGTGCAGCTTTTGTTTGGATATG 59.613 41.667 0.00 0.00 0.00 1.78
3843 3955 6.484643 CAGCTATGTCCACTGCTATTGTTATT 59.515 38.462 0.00 0.00 34.10 1.40
3847 3959 3.801698 CAGCTATGTCCACTGCTATTGT 58.198 45.455 0.00 0.00 34.10 2.71
3991 4103 8.482128 AGAAGAAGAAGAATAACCATGTAGGAG 58.518 37.037 0.00 0.00 41.22 3.69
4020 4132 7.398024 AGCTTGTAGAAGTAGAACCATCAATT 58.602 34.615 1.12 0.00 0.00 2.32
4105 4221 8.402472 TGAGACATTTTCAGAAAATACAACGTT 58.598 29.630 18.84 0.00 38.97 3.99
4107 4223 8.955061 ATGAGACATTTTCAGAAAATACAACG 57.045 30.769 18.84 10.16 38.97 4.10
4118 4234 8.206325 ACTACTTGCATATGAGACATTTTCAG 57.794 34.615 6.97 0.00 0.00 3.02
4119 4235 9.098355 GTACTACTTGCATATGAGACATTTTCA 57.902 33.333 6.97 0.00 0.00 2.69
4171 4310 4.946157 GGATTGGAGCAGAAGAATCAGAAA 59.054 41.667 0.00 0.00 0.00 2.52
4231 4373 4.197750 GCTCCCATATCCATATTCTGCAG 58.802 47.826 7.63 7.63 0.00 4.41
4244 4386 3.393800 CGTCGAGATTTTGCTCCCATAT 58.606 45.455 0.00 0.00 0.00 1.78
4325 4467 5.220491 GCCATCTTTAAACATCTCGTCAGTC 60.220 44.000 0.00 0.00 0.00 3.51
4384 4526 9.388506 GATCTAGAATCTCACAAATCTTTTCCA 57.611 33.333 0.00 0.00 0.00 3.53
4742 4890 9.887629 CATAGATAGCATCCTTTCAACATAGAT 57.112 33.333 0.00 0.00 0.00 1.98
4764 4912 7.443272 TGCAACAGAGGATGATTCATAACATAG 59.557 37.037 0.00 0.00 0.00 2.23
4910 5058 3.607078 CGTAAGCAAAGAACAGCCAAGTC 60.607 47.826 0.00 0.00 0.00 3.01
4938 5086 9.234827 GGCTTAAACCTTAAAGACCAGTTTATA 57.765 33.333 0.00 0.00 34.05 0.98
4939 5087 7.948447 AGGCTTAAACCTTAAAGACCAGTTTAT 59.052 33.333 0.00 0.00 36.28 1.40
4940 5088 7.292319 AGGCTTAAACCTTAAAGACCAGTTTA 58.708 34.615 0.00 0.00 36.28 2.01
4941 5089 6.134055 AGGCTTAAACCTTAAAGACCAGTTT 58.866 36.000 0.00 0.00 36.28 2.66
4943 5091 5.320488 AGGCTTAAACCTTAAAGACCAGT 57.680 39.130 0.00 0.00 36.28 4.00
4944 5092 7.754851 TTTAGGCTTAAACCTTAAAGACCAG 57.245 36.000 2.02 0.00 41.50 4.00
4945 5093 9.984590 ATATTTAGGCTTAAACCTTAAAGACCA 57.015 29.630 2.02 0.00 41.50 4.02
4967 5115 9.466497 CAGGGGCATTGTTAGTTCATATATATT 57.534 33.333 0.00 0.00 0.00 1.28
4968 5116 8.614814 ACAGGGGCATTGTTAGTTCATATATAT 58.385 33.333 0.00 0.00 0.00 0.86
4969 5117 7.984475 ACAGGGGCATTGTTAGTTCATATATA 58.016 34.615 0.00 0.00 0.00 0.86
4970 5118 6.852404 ACAGGGGCATTGTTAGTTCATATAT 58.148 36.000 0.00 0.00 0.00 0.86
4971 5119 6.260700 ACAGGGGCATTGTTAGTTCATATA 57.739 37.500 0.00 0.00 0.00 0.86
4972 5120 5.129368 ACAGGGGCATTGTTAGTTCATAT 57.871 39.130 0.00 0.00 0.00 1.78
5026 5174 6.890663 TGCTTTTCATTCAACTTTCAAGTG 57.109 33.333 0.00 0.00 39.66 3.16
5065 5213 5.279708 CCGGTATGCTCTTGAATCCTCTTAT 60.280 44.000 0.00 0.00 0.00 1.73
5076 5224 1.138859 TCCATCACCGGTATGCTCTTG 59.861 52.381 6.87 0.00 0.00 3.02
5081 5229 2.550830 ATTCTCCATCACCGGTATGC 57.449 50.000 6.87 0.00 0.00 3.14
5101 5249 3.059868 GCAAAGCAGCGTCGCTATAATTA 60.060 43.478 21.25 0.00 42.89 1.40
5102 5250 2.286418 GCAAAGCAGCGTCGCTATAATT 60.286 45.455 21.25 9.92 42.89 1.40
5103 5251 1.261619 GCAAAGCAGCGTCGCTATAAT 59.738 47.619 21.25 4.12 42.89 1.28
5104 5252 0.650512 GCAAAGCAGCGTCGCTATAA 59.349 50.000 21.25 0.00 42.89 0.98
5105 5253 1.151777 GGCAAAGCAGCGTCGCTATA 61.152 55.000 21.25 0.00 42.89 1.31
5121 5269 3.272364 ATCGCTGCTTCCCTTGGCA 62.272 57.895 0.00 0.00 36.94 4.92
5150 5298 1.324005 GGGTGTTCGAGGAGCTAGCT 61.324 60.000 19.45 19.45 0.00 3.32
5151 5299 1.142097 GGGTGTTCGAGGAGCTAGC 59.858 63.158 6.62 6.62 0.00 3.42
5152 5300 0.457851 CAGGGTGTTCGAGGAGCTAG 59.542 60.000 0.00 0.00 0.00 3.42
5153 5301 1.605058 GCAGGGTGTTCGAGGAGCTA 61.605 60.000 0.00 0.00 0.00 3.32
5197 5345 0.541998 TTCTCCTCGTCTTCCAGGCA 60.542 55.000 0.00 0.00 0.00 4.75
5224 5372 2.480845 GCTGTTCGTTCAGTAGGTGTT 58.519 47.619 10.16 0.00 37.70 3.32
5233 5381 0.036388 GGGAGATGGCTGTTCGTTCA 60.036 55.000 0.00 0.00 0.00 3.18
5234 5382 0.744771 GGGGAGATGGCTGTTCGTTC 60.745 60.000 0.00 0.00 0.00 3.95
5236 5384 2.990479 GGGGAGATGGCTGTTCGT 59.010 61.111 0.00 0.00 0.00 3.85
5237 5385 2.202932 CGGGGAGATGGCTGTTCG 60.203 66.667 0.00 0.00 0.00 3.95
5238 5386 1.153349 GTCGGGGAGATGGCTGTTC 60.153 63.158 0.00 0.00 0.00 3.18
5239 5387 1.274703 ATGTCGGGGAGATGGCTGTT 61.275 55.000 0.00 0.00 0.00 3.16
5240 5388 1.274703 AATGTCGGGGAGATGGCTGT 61.275 55.000 0.00 0.00 0.00 4.40
5241 5389 0.816825 CAATGTCGGGGAGATGGCTG 60.817 60.000 0.00 0.00 0.00 4.85
5242 5390 1.528824 CAATGTCGGGGAGATGGCT 59.471 57.895 0.00 0.00 0.00 4.75
5243 5391 2.189499 GCAATGTCGGGGAGATGGC 61.189 63.158 0.00 0.00 0.00 4.40
5273 5421 0.373716 CGTACTTCAATCAAGCGGCC 59.626 55.000 0.00 0.00 35.17 6.13
5329 5477 1.108727 TCTGTTGTTGGCCTTGCTGG 61.109 55.000 3.32 0.00 39.35 4.85
5330 5478 0.031178 GTCTGTTGTTGGCCTTGCTG 59.969 55.000 3.32 0.00 0.00 4.41
5331 5479 0.395586 TGTCTGTTGTTGGCCTTGCT 60.396 50.000 3.32 0.00 0.00 3.91
5332 5480 0.675633 ATGTCTGTTGTTGGCCTTGC 59.324 50.000 3.32 0.00 0.00 4.01
5333 5481 1.955778 TCATGTCTGTTGTTGGCCTTG 59.044 47.619 3.32 0.00 0.00 3.61
5334 5482 2.233271 CTCATGTCTGTTGTTGGCCTT 58.767 47.619 3.32 0.00 0.00 4.35
5335 5483 1.143684 ACTCATGTCTGTTGTTGGCCT 59.856 47.619 3.32 0.00 0.00 5.19
5349 5497 2.513204 CTCCAGGCCGCACTCATG 60.513 66.667 0.00 0.00 0.00 3.07
5361 5509 0.038159 GTTCTGACACCGACCTCCAG 60.038 60.000 0.00 0.00 0.00 3.86
5372 5520 3.535629 CTGGGGCGCAGTTCTGACA 62.536 63.158 22.22 0.00 0.00 3.58
5406 5554 3.557595 CCTCTACTGTCGAATTTGGATGC 59.442 47.826 0.00 0.00 0.00 3.91
5418 5566 2.425668 GTTGCTCCTCTCCTCTACTGTC 59.574 54.545 0.00 0.00 0.00 3.51
5431 5579 0.246086 CTTCTCTCAGCGTTGCTCCT 59.754 55.000 0.00 0.00 36.40 3.69
5432 5580 1.357991 GCTTCTCTCAGCGTTGCTCC 61.358 60.000 0.00 0.00 36.40 4.70
5451 5599 3.499737 GTCTTGCGCCATCCACGG 61.500 66.667 4.18 0.00 0.00 4.94
5454 5602 1.228398 TTTGGTCTTGCGCCATCCA 60.228 52.632 4.18 5.73 35.71 3.41
5458 5606 2.194597 ACCTTTGGTCTTGCGCCA 59.805 55.556 4.18 0.00 0.00 5.69
5496 5644 4.479993 CCTCTGCTTCGGCCAGGG 62.480 72.222 2.24 0.00 40.91 4.45
5552 5721 1.518572 GCGGCTGCTTAGCGTTCTA 60.519 57.895 11.21 0.00 38.39 2.10


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.