AutoCloner

Multiple sequence alignment - TraesCS2B01G621400

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)

BLAST Results

Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

	qseqid	sseqid	percentage.identical	alignment.length	no.mismatch	no.gap.openings	qstart	qend	sstart	send	evalue	bitscore
0	TraesCS2B01G621400	chr2B	100.000	2801	0	0	1	2801	795839074	795836274	0.000000e+00	5173
1	TraesCS2B01G621400	chr2B	83.724	2814	438	11	1	2801	59270445	59267639	0.000000e+00	2641
2	TraesCS2B01G621400	chr2A	83.570	2818	418	27	1	2801	666624603	666627392	0.000000e+00	2597
3	TraesCS2B01G621400	chr4D	88.445	2103	232	9	696	2798	449476941	449479032	0.000000e+00	2527
4	TraesCS2B01G621400	chr4D	86.419	1988	261	8	815	2801	14567785	14569764	0.000000e+00	2167
5	TraesCS2B01G621400	chr4D	87.148	817	91	7	1	805	14566582	14567396	0.000000e+00	915
6	TraesCS2B01G621400	chr4D	85.257	719	65	16	1	700	449466670	449467366	0.000000e+00	702
7	TraesCS2B01G621400	chr3D	81.540	2806	492	18	1	2791	541364424	541367218	0.000000e+00	2289
8	TraesCS2B01G621400	chr7A	81.352	2810	489	24	1	2791	637828539	637831332	0.000000e+00	2254
9	TraesCS2B01G621400	chr2D	81.135	2820	498	24	1	2801	293044794	293041990	0.000000e+00	2230
10	TraesCS2B01G621400	chr2D	82.122	2008	327	21	1	1989	13674739	13672745	0.000000e+00	1690
11	TraesCS2B01G621400	chr3A	79.730	2812	533	22	1	2791	181431886	181434681	0.000000e+00	2001
12	TraesCS2B01G621400	chr6B	79.539	2820	539	27	4	2801	584657843	584655040	0.000000e+00	1977
13	TraesCS2B01G621400	chr3B	89.209	1075	112	2	829	1903	744929734	744928664	0.000000e+00	1339
14	TraesCS2B01G621400	chr3B	84.890	589	67	15	6	575	744966419	744965834	2.420000e-160	575
15	TraesCS2B01G621400	chr3B	90.204	245	22	1	570	814	744929964	744929722	4.500000e-83	318
16	TraesCS2B01G621400	chr5A	84.016	1001	146	7	1	989	293470337	293469339	0.000000e+00	950
17	TraesCS2B01G621400	chr7B	81.450	593	90	12	6	581	689877079	689876490	4.220000e-128	468

These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

	query	scaffold	start	end	length	rev.comp	avg.bitscore	max.bitscore	avg.percent.identical	query.start	query.end	num_hsp	groupid	homo_length
0	TraesCS2B01G621400	chr2B	795836274	795839074	2800	True	5173.0	5173	100.0000	1	2801	1	chr2B.!!$R2	2800
1	TraesCS2B01G621400	chr2B	59267639	59270445	2806	True	2641.0	2641	83.7240	1	2801	1	chr2B.!!$R1	2800
2	TraesCS2B01G621400	chr2A	666624603	666627392	2789	False	2597.0	2597	83.5700	1	2801	1	chr2A.!!$F1	2800
3	TraesCS2B01G621400	chr4D	449476941	449479032	2091	False	2527.0	2527	88.4450	696	2798	1	chr4D.!!$F2	2102
4	TraesCS2B01G621400	chr4D	14566582	14569764	3182	False	1541.0	2167	86.7835	1	2801	2	chr4D.!!$F3	2800
5	TraesCS2B01G621400	chr4D	449466670	449467366	696	False	702.0	702	85.2570	1	700	1	chr4D.!!$F1	699
6	TraesCS2B01G621400	chr3D	541364424	541367218	2794	False	2289.0	2289	81.5400	1	2791	1	chr3D.!!$F1	2790
7	TraesCS2B01G621400	chr7A	637828539	637831332	2793	False	2254.0	2254	81.3520	1	2791	1	chr7A.!!$F1	2790
8	TraesCS2B01G621400	chr2D	293041990	293044794	2804	True	2230.0	2230	81.1350	1	2801	1	chr2D.!!$R2	2800
9	TraesCS2B01G621400	chr2D	13672745	13674739	1994	True	1690.0	1690	82.1220	1	1989	1	chr2D.!!$R1	1988
10	TraesCS2B01G621400	chr3A	181431886	181434681	2795	False	2001.0	2001	79.7300	1	2791	1	chr3A.!!$F1	2790
11	TraesCS2B01G621400	chr6B	584655040	584657843	2803	True	1977.0	1977	79.5390	4	2801	1	chr6B.!!$R1	2797
12	TraesCS2B01G621400	chr3B	744928664	744929964	1300	True	828.5	1339	89.7065	570	1903	2	chr3B.!!$R2	1333
13	TraesCS2B01G621400	chr3B	744965834	744966419	585	True	575.0	575	84.8900	6	575	1	chr3B.!!$R1	569
14	TraesCS2B01G621400	chr5A	293469339	293470337	998	True	950.0	950	84.0160	1	989	1	chr5A.!!$R1	988
15	TraesCS2B01G621400	chr7B	689876490	689877079	589	True	468.0	468	81.4500	6	581	1	chr7B.!!$R1	575

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
840	1241	0.44899	CTGCACATCCATCAACACCG	59.551	55.0	0.0	0.0	0.0	4.94	F

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
1993	2395	0.037232	ACCAACGAGCTCCAACTAGC	60.037	55.0	8.47	0.0	43.11	3.42	R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
120	124	2.300433	CGAGATCCATGGGCAATCAAA	58.700	47.619	13.02	0.00	0.00	2.69
225	230	3.107601	TGATCCCGTCTCTGAATCCTTT	58.892	45.455	0.00	0.00	0.00	3.11
231	236	2.159028	CGTCTCTGAATCCTTTCCCCTC	60.159	54.545	0.00	0.00	0.00	4.30
242	247	2.310052	CCTTTCCCCTCACCTTCTCAAT	59.690	50.000	0.00	0.00	0.00	2.57
270	275	2.356278	GATGGGGCAAGCACCTCA	59.644	61.111	15.34	0.00	46.68	3.86
409	414	1.841302	ATTTCTCGGGTCCAGCTGCA	61.841	55.000	8.66	0.00	0.00	4.41
414	430	1.675310	CGGGTCCAGCTGCAATCAA	60.675	57.895	8.66	0.00	0.00	2.57
546	568	5.636965	AGACAGACGAATTCAGTTCAGATTG	59.363	40.000	6.22	0.00	36.60	2.67
552	574	4.264614	CGAATTCAGTTCAGATTGCATTGC	59.735	41.667	6.22	0.46	36.60	3.56
560	582	2.487372	TCAGATTGCATTGCACGCTTTA	59.513	40.909	11.66	0.00	38.71	1.85
565	587	2.814269	TGCATTGCACGCTTTAAAACA	58.186	38.095	7.38	0.00	31.71	2.83
599	621	7.443575	ACCACATGATATCTTATTCAGAACTGC	59.556	37.037	0.00	0.00	34.16	4.40
604	626	2.346803	TCTTATTCAGAACTGCCGCAC	58.653	47.619	0.00	0.00	0.00	5.34
640	662	3.888424	TCGGTTCATCGAGGGACTA	57.112	52.632	8.64	0.00	41.55	2.59
656	678	1.300697	CTACGGGCGGACATAAGGC	60.301	63.158	0.00	0.00	0.00	4.35
657	679	1.745320	CTACGGGCGGACATAAGGCT	61.745	60.000	0.00	0.00	0.00	4.58
736	758	1.471684	CAAGAAGAAGTGGCAGATGGC	59.528	52.381	0.00	0.00	43.74	4.40
840	1241	0.448990	CTGCACATCCATCAACACCG	59.551	55.000	0.00	0.00	0.00	4.94
846	1247	3.803082	CCATCAACACCGGCAGCG	61.803	66.667	0.00	0.00	0.00	5.18
893	1294	2.282745	AGCAAGGGCAGGAACAGC	60.283	61.111	0.00	0.00	44.61	4.40
897	1298	2.520536	AAGGGCAGGAACAGCGAGT	61.521	57.895	0.00	0.00	43.72	4.18
915	1316	4.921547	CGAGTAGCAAGATAGCAACACTA	58.078	43.478	0.00	0.00	36.85	2.74
916	1317	5.524284	CGAGTAGCAAGATAGCAACACTAT	58.476	41.667	0.00	0.00	44.62	2.12
933	1334	5.241662	ACACTATGTTCTTTCAGAAGAGCC	58.758	41.667	1.48	0.00	42.55	4.70
935	1336	3.795688	ATGTTCTTTCAGAAGAGCCCA	57.204	42.857	1.48	0.00	42.55	5.36
1053	1454	1.808945	GCAACAGAAGAGATGTGTGGG	59.191	52.381	0.00	0.00	35.36	4.61
1107	1508	5.647658	CGAGGATAATCTCTGCACTATCTCT	59.352	44.000	0.00	0.00	0.00	3.10
1292	1693	0.387622	CGAGTTAAGGTTGCGGACGA	60.388	55.000	0.00	0.00	0.00	4.20
1299	1700	0.034896	AGGTTGCGGACGATTCTGTT	59.965	50.000	0.00	0.00	0.00	3.16
1402	1803	2.143876	AGGGGCTTATGACGCAATTT	57.856	45.000	1.20	0.00	36.50	1.82
1410	1811	4.680440	GCTTATGACGCAATTTTGGGGATT	60.680	41.667	11.42	0.00	44.44	3.01
1424	1825	2.245546	TGGGGATTGATTGGCTCAAGAT	59.754	45.455	0.00	0.00	46.71	2.40
1440	1841	3.261643	TCAAGATACATAGCCCGATGCAT	59.738	43.478	0.00	0.00	44.83	3.96
1458	1859	0.615331	ATGTCGACTGGGAAGCACAT	59.385	50.000	17.92	0.00	0.00	3.21
1486	1887	2.705658	ACAGTGACCACAGATCAAGGAA	59.294	45.455	0.00	0.00	0.00	3.36
1487	1888	3.244353	ACAGTGACCACAGATCAAGGAAG	60.244	47.826	0.00	0.00	0.00	3.46
1488	1889	3.007290	CAGTGACCACAGATCAAGGAAGA	59.993	47.826	2.78	0.00	0.00	2.87
1505	1906	5.006386	AGGAAGAACTGTAGATTTGCAAGG	58.994	41.667	0.00	0.00	0.00	3.61
1563	1964	0.108233	CTCAAGAGCTCCTGTCTGCC	60.108	60.000	10.93	0.00	0.00	4.85
1611	2012	2.899900	AGTACACCTGAATGCTGTCAGA	59.100	45.455	16.10	0.00	46.76	3.27
1622	2023	0.907230	GCTGTCAGAGAGAAGGGGGT	60.907	60.000	3.32	0.00	0.00	4.95
1639	2040	3.365472	GGGGTGCAAGAGGAAAACATAT	58.635	45.455	0.00	0.00	0.00	1.78
1697	2098	8.288913	CACAGATGTTTTTGAAAAACCAAAAGT	58.711	29.630	25.43	16.31	43.99	2.66
1786	2187	1.211949	GCCCCTATAGACACAAGCCAA	59.788	52.381	0.00	0.00	0.00	4.52
1796	2197	5.146010	AGACACAAGCCAAAACTCAAAAA	57.854	34.783	0.00	0.00	0.00	1.94
1866	2267	2.355818	GGGAGAGTACGAGCCCATTTTT	60.356	50.000	13.11	0.00	40.39	1.94
1993	2395	4.117685	TCATCGATGAGTTGCTTGATGAG	58.882	43.478	23.99	0.00	37.79	2.90
1994	2396	5.502414	TCATCGATGAGTTGCTTGATGAGC	61.502	45.833	23.99	0.00	40.85	4.26
2070	2472	2.003548	GGATGGCAGAGGGGGAAGT	61.004	63.158	0.00	0.00	0.00	3.01
2106	2508	0.251474	ACTACACACTCGGGGCACTA	60.251	55.000	0.00	0.00	0.00	2.74
2107	2509	1.112113	CTACACACTCGGGGCACTAT	58.888	55.000	0.00	0.00	0.00	2.12
2146	2548	0.112218	TTGGGTTAGCATGTGCACCT	59.888	50.000	15.69	6.87	45.16	4.00
2158	2560	1.133513	TGTGCACCTCCAACCTTCATT	60.134	47.619	15.69	0.00	0.00	2.57
2176	2578	0.105964	TTGGCGCTGTGACTTGTACT	59.894	50.000	7.64	0.00	0.00	2.73
2269	2671	4.820897	AGCAACATGTAGAACATCTTCGA	58.179	39.130	0.00	0.00	36.53	3.71
2320	2722	2.665165	TGGCAAGTGAAACAGTCCAAT	58.335	42.857	0.00	0.00	41.43	3.16
2324	2726	4.044426	GCAAGTGAAACAGTCCAATTGTC	58.956	43.478	4.43	0.00	41.43	3.18
2350	2752	1.810151	GGACAACGGCAGATTGCTTAA	59.190	47.619	0.67	0.00	44.28	1.85
2361	2763	0.826062	ATTGCTTAACTGGGGCATGC	59.174	50.000	9.90	9.90	35.84	4.06
2373	2775	1.396607	GGGCATGCCATTGATGAGCA	61.397	55.000	36.56	8.76	37.99	4.26
2430	2832	3.765381	TCAGAAAATGGCATGTTCCTCA	58.235	40.909	23.59	7.88	0.00	3.86
2569	2971	1.065491	TGTGTGGACTGCTGAAACTGT	60.065	47.619	0.00	0.00	0.00	3.55
2613	3015	1.203441	AGGCCTGATCTCTGCACCAA	61.203	55.000	3.11	0.00	0.00	3.67
2659	3061	8.268850	AGTAAGCAGTTTGTTATTGATACTGG	57.731	34.615	0.00	0.00	37.33	4.00
2746	3149	0.764271	CCTTTGGCCCCAAAACACAT	59.236	50.000	13.04	0.00	44.07	3.21
2762	3165	5.514500	AACACATAGGGTTGTCCACTTAT	57.486	39.130	0.00	0.00	38.24	1.73
2791	3194	4.392940	GAATGCTTGGCTATACTCATGGT	58.607	43.478	0.00	0.00	0.00	3.55

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
49	50	1.685355	ATCCGATGGATGTCGTGGCA	61.685	55.000	0.00	0.00	41.43	4.92
98	102	0.535780	GATTGCCCATGGATCTCGCA	60.536	55.000	15.22	11.23	0.00	5.10
109	113	1.511318	CGTCGTGGTTTGATTGCCCA	61.511	55.000	0.00	0.00	0.00	5.36
149	153	2.751913	CGAGAGTCACCGTCGGAGG	61.752	68.421	20.51	9.88	37.30	4.30
225	230	3.519510	CAGTAATTGAGAAGGTGAGGGGA	59.480	47.826	0.00	0.00	0.00	4.81
231	236	2.673368	GCCGTCAGTAATTGAGAAGGTG	59.327	50.000	9.17	0.00	36.21	4.00
242	247	2.897207	CCCCATCGCCGTCAGTAA	59.103	61.111	0.00	0.00	0.00	2.24
270	275	1.258445	ACTGGGAAACGAGATCGGCT	61.258	55.000	7.22	0.00	44.95	5.52
419	435	4.335647	AGGCCAGCGACCTTGTGG	62.336	66.667	5.01	0.00	31.87	4.17
503	520	8.356657	GTCTGTCTAATAGCATAGAACTGACAT	58.643	37.037	16.62	0.00	35.33	3.06
504	521	7.467403	CGTCTGTCTAATAGCATAGAACTGACA	60.467	40.741	18.62	0.00	35.19	3.58
552	574	5.689514	TGGTTCATCAATGTTTTAAAGCGTG	59.310	36.000	0.00	0.00	0.00	5.34
560	582	8.974238	AGATATCATGTGGTTCATCAATGTTTT	58.026	29.630	5.32	0.00	34.09	2.43
599	621	3.127030	GTCAAGAAGAAATAAGGGTGCGG	59.873	47.826	0.00	0.00	0.00	5.69
604	626	4.833390	ACCGAGTCAAGAAGAAATAAGGG	58.167	43.478	0.00	0.00	0.00	3.95
640	662	1.745320	CTAGCCTTATGTCCGCCCGT	61.745	60.000	0.00	0.00	0.00	5.28
679	701	3.681835	GCCGTGTCGAGGTCAGGT	61.682	66.667	0.00	0.00	0.00	4.00
736	758	1.057822	CGCGTGCTTGACAATCTCG	59.942	57.895	0.00	8.65	0.00	4.04
766	788	3.491598	AAACCGTGGTGCTGGGAGG	62.492	63.158	0.00	0.00	0.00	4.30
794	816	2.029666	GTGCCGATGGAGCGCTAT	59.970	61.111	11.50	0.00	37.75	2.97
795	817	4.221422	GGTGCCGATGGAGCGCTA	62.221	66.667	11.50	0.00	40.59	4.26
846	1247	4.838152	TGGCAATCCTCCGCGCTC	62.838	66.667	5.56	0.00	0.00	5.03
852	1253	1.064463	TCTGTTCCATGGCAATCCTCC	60.064	52.381	6.96	0.00	0.00	4.30
893	1294	3.775202	AGTGTTGCTATCTTGCTACTCG	58.225	45.455	0.00	0.00	38.94	4.18
897	1298	6.878317	AGAACATAGTGTTGCTATCTTGCTA	58.122	36.000	0.00	0.00	41.28	3.49
933	1334	4.216257	CCACACTTAAAACAGAGACCATGG	59.784	45.833	11.19	11.19	0.00	3.66
935	1336	4.398319	CCCACACTTAAAACAGAGACCAT	58.602	43.478	0.00	0.00	0.00	3.55
1053	1454	4.358851	CTGAGTGATCTTGATCGTTCTCC	58.641	47.826	17.94	8.56	0.00	3.71
1107	1508	4.299586	TGATCCATCCACTGCTTGTTTA	57.700	40.909	0.00	0.00	0.00	2.01
1168	1569	5.048846	ACCAACAGTGACATTTCCTTACT	57.951	39.130	0.00	0.00	0.00	2.24
1240	1641	1.857217	CAGCTTGCACACGCTAGATAG	59.143	52.381	0.92	0.00	42.79	2.08
1292	1693	5.126067	AGCTGTCACAGTGTAAAACAGAAT	58.874	37.500	25.34	15.37	39.72	2.40
1299	1700	4.515191	GGAATGAAGCTGTCACAGTGTAAA	59.485	41.667	6.68	0.00	39.72	2.01
1402	1803	2.042842	TCTTGAGCCAATCAATCCCCAA	59.957	45.455	0.00	0.00	46.71	4.12
1424	1825	1.336795	CGACATGCATCGGGCTATGTA	60.337	52.381	0.00	0.00	41.27	2.29
1440	1841	0.037326	GATGTGCTTCCCAGTCGACA	60.037	55.000	19.50	0.00	0.00	4.35
1458	1859	2.038659	TCTGTGGTCACTGTCATGTGA	58.961	47.619	2.66	0.00	43.72	3.58
1486	1887	5.221722	TGACTCCTTGCAAATCTACAGTTCT	60.222	40.000	0.00	0.00	0.00	3.01
1487	1888	4.997395	TGACTCCTTGCAAATCTACAGTTC	59.003	41.667	0.00	0.00	0.00	3.01
1488	1889	4.757149	GTGACTCCTTGCAAATCTACAGTT	59.243	41.667	0.00	0.00	0.00	3.16
1505	1906	5.050091	CACTGGTGTTGATGTTTAGTGACTC	60.050	44.000	0.00	0.00	36.96	3.36
1563	1964	1.198637	GCAACAGAGCCTTGCTTACAG	59.801	52.381	0.00	0.00	39.88	2.74
1611	2012	1.204113	CCTCTTGCACCCCCTTCTCT	61.204	60.000	0.00	0.00	0.00	3.10
1622	2023	4.701651	CCACTGATATGTTTTCCTCTTGCA	59.298	41.667	0.00	0.00	0.00	4.08
1639	2040	2.711009	ACACCCTGAGAATTTCCACTGA	59.289	45.455	0.00	0.00	0.00	3.41
1697	2098	4.641645	CACGCCTTGGTGGGAGCA	62.642	66.667	5.16	0.00	34.27	4.26
1796	2197	1.418334	ACCTGGCGCTCTATCTCATT	58.582	50.000	7.64	0.00	0.00	2.57
1810	2211	1.003580	TCAAGCAGCTCCTTAACCTGG	59.996	52.381	0.00	0.00	0.00	4.45
1846	2247	2.678336	CAAAAATGGGCTCGTACTCTCC	59.322	50.000	0.00	0.00	0.00	3.71
1866	2267	5.924356	TCTTCACAAGTAATGTTGGAGACA	58.076	37.500	0.00	0.00	41.46	3.41
1904	2306	1.657094	GTAATCTACACACAACCGCCG	59.343	52.381	0.00	0.00	0.00	6.46
1909	2311	8.083462	TCAAACATCTGTAATCTACACACAAC	57.917	34.615	0.00	0.00	34.46	3.32
1993	2395	0.037232	ACCAACGAGCTCCAACTAGC	60.037	55.000	8.47	0.00	43.11	3.42
1994	2396	2.028930	AGAACCAACGAGCTCCAACTAG	60.029	50.000	8.47	0.00	0.00	2.57
2054	2456	2.815357	TATACTTCCCCCTCTGCCAT	57.185	50.000	0.00	0.00	0.00	4.40
2106	2508	5.184479	CCAAATGACATGACCAAGAACTCAT	59.816	40.000	0.00	0.00	0.00	2.90
2107	2509	4.520111	CCAAATGACATGACCAAGAACTCA	59.480	41.667	0.00	0.00	0.00	3.41
2158	2560	0.105964	AAGTACAAGTCACAGCGCCA	59.894	50.000	2.29	0.00	0.00	5.69
2176	2578	0.666274	CACGCAGCAGAGGTCGTAAA	60.666	55.000	0.00	0.00	33.51	2.01
2269	2671	0.740737	GGAGCAGTTGCAACACTTGT	59.259	50.000	30.11	7.43	45.16	3.16
2350	2752	1.046472	CATCAATGGCATGCCCCAGT	61.046	55.000	33.44	13.07	38.50	4.00
2361	2763	3.697542	TGAAACTCCATGCTCATCAATGG	59.302	43.478	0.00	0.00	35.58	3.16
2373	2775	2.571653	TCTGGATCCGTTGAAACTCCAT	59.428	45.455	7.39	0.00	32.46	3.41
2430	2832	2.185004	ACGCACCTCTTTGCTGTTAT	57.815	45.000	0.00	0.00	40.62	1.89
2546	2948	3.088532	AGTTTCAGCAGTCCACACAAAA	58.911	40.909	0.00	0.00	0.00	2.44
2589	2991	0.814812	GCAGAGATCAGGCCTTGCTC	60.815	60.000	16.06	15.65	0.00	4.26
2613	3015	0.403271	AAGTCTGGCAAGTGCAGGAT	59.597	50.000	5.52	0.00	44.36	3.24
2657	3059	2.591429	CCATAATCGCAGGCGCCA	60.591	61.111	31.54	8.23	39.59	5.69
2659	3061	1.160329	AACTCCATAATCGCAGGCGC	61.160	55.000	9.11	0.00	39.59	6.53
2735	3138	2.560981	GGACAACCCTATGTGTTTTGGG	59.439	50.000	0.00	0.00	44.89	4.12
2738	3141	4.178956	AGTGGACAACCCTATGTGTTTT	57.821	40.909	0.00	0.00	32.57	2.43
2746	3149	5.311121	TCCTTTTCATAAGTGGACAACCCTA	59.689	40.000	0.00	0.00	35.38	3.53
2762	3165	5.509498	AGTATAGCCAAGCATTCCTTTTCA	58.491	37.500	0.00	0.00	0.00	2.69

Based at the University of Bristol with support from BBSRC.

AutoCloner maintained by Alex Coulton.