AutoCloner

Multiple sequence alignment - TraesCS2B01G621300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)

BLAST Results

Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

	qseqid	sseqid	percentage.identical	alignment.length	no.mismatch	no.gap.openings	qstart	qend	sstart	send	evalue	bitscore
0	TraesCS2B01G621300	chr2B	100.000	4259	0	0	1	4259	795427715	795423457	0.000000e+00	7866.0
1	TraesCS2B01G621300	chr2B	80.495	687	104	14	1221	1898	795283221	795282556	2.290000e-137	499.0
2	TraesCS2B01G621300	chr2B	88.991	109	11	1	3564	3671	20084444	20084552	2.670000e-27	134.0
3	TraesCS2B01G621300	chr2B	88.571	105	12	0	2491	2595	794899036	794898932	1.240000e-25	128.0
4	TraesCS2B01G621300	chr2A	97.225	3207	62	12	784	3974	762017209	762020404	0.000000e+00	5404.0
5	TraesCS2B01G621300	chr2A	92.495	533	23	8	131	653	762016565	762017090	0.000000e+00	747.0
6	TraesCS2B01G621300	chr2A	83.977	699	89	12	1224	1918	762469824	762469145	0.000000e+00	649.0
7	TraesCS2B01G621300	chr2A	83.043	631	98	4	2127	2750	762144150	762144778	7.990000e-157	564.0
8	TraesCS2B01G621300	chr2A	87.528	441	46	6	2732	3166	762462462	762462025	6.360000e-138	501.0
9	TraesCS2B01G621300	chr2A	80.764	681	89	20	1239	1898	762141485	762142144	1.060000e-135	494.0
10	TraesCS2B01G621300	chr2A	95.513	156	7	0	3990	4145	400984042	400983887	2.540000e-62	250.0
11	TraesCS2B01G621300	chr2A	94.304	158	9	0	3990	4147	402972115	402971958	4.250000e-60	243.0
12	TraesCS2B01G621300	chr2A	97.638	127	3	0	4133	4259	400981969	400981843	7.170000e-53	219.0
13	TraesCS2B01G621300	chr2A	96.063	127	5	0	4133	4259	402970047	402969921	1.550000e-49	207.0
14	TraesCS2B01G621300	chr2A	100.000	82	0	0	1	82	762016486	762016567	7.380000e-33	152.0
15	TraesCS2B01G621300	chrUn	92.779	1925	65	33	1	1896	22744818	22746697	0.000000e+00	2717.0
16	TraesCS2B01G621300	chrUn	89.784	832	79	4	1941	2770	22368850	22369677	0.000000e+00	1061.0
17	TraesCS2B01G621300	chrUn	84.805	1053	148	8	2120	3171	22749075	22750116	0.000000e+00	1048.0
18	TraesCS2B01G621300	chrUn	87.257	824	66	21	1135	1942	22367845	22368645	0.000000e+00	904.0
19	TraesCS2B01G621300	chrUn	91.304	368	32	0	2804	3171	22369678	22370045	1.770000e-138	503.0
20	TraesCS2B01G621300	chr2D	89.689	1222	103	13	2120	3328	381244966	381243755	0.000000e+00	1537.0
21	TraesCS2B01G621300	chr2D	92.478	1037	38	21	1	1009	381569518	381568494	0.000000e+00	1447.0
22	TraesCS2B01G621300	chr2D	89.733	1013	21	25	840	1801	381568657	381567677	0.000000e+00	1218.0
23	TraesCS2B01G621300	chr2D	84.710	1053	149	8	2120	3171	381565353	381564312	0.000000e+00	1042.0
24	TraesCS2B01G621300	chr2D	81.295	1112	186	13	2062	3156	380774307	380775413	0.000000e+00	881.0
25	TraesCS2B01G621300	chr2D	80.648	1111	173	19	2062	3156	381089291	381088207	0.000000e+00	822.0
26	TraesCS2B01G621300	chr2D	81.654	665	106	11	1221	1881	381092482	381091830	4.850000e-149	538.0
27	TraesCS2B01G621300	chr2D	81.241	693	103	16	1221	1898	380935354	380936034	6.270000e-148	534.0
28	TraesCS2B01G621300	chr2D	92.832	279	20	0	2888	3166	637582952	637583230	5.130000e-109	405.0
29	TraesCS2B01G621300	chr2D	88.923	325	29	6	1224	1546	637579099	637579418	1.110000e-105	394.0
30	TraesCS2B01G621300	chr2D	84.680	359	47	5	2062	2413	380938301	380938658	6.780000e-93	351.0
31	TraesCS2B01G621300	chr2D	87.037	108	14	0	3564	3671	323252822	323252715	5.780000e-24	122.0
32	TraesCS2B01G621300	chr2D	86.486	111	10	3	3564	3671	489908352	489908460	2.690000e-22	117.0
33	TraesCS2B01G621300	chr2D	86.667	105	11	3	2491	2593	637582167	637582270	3.480000e-21	113.0
34	TraesCS2B01G621300	chr4B	78.667	300	36	12	491	763	373531259	373530961	1.570000e-39	174.0
35	TraesCS2B01G621300	chr4B	78.292	281	33	14	508	763	373537809	373538086	5.700000e-34	156.0
36	TraesCS2B01G621300	chr4A	78.333	300	37	12	491	763	688705205	688705503	7.320000e-38	169.0
37	TraesCS2B01G621300	chr3B	78.333	300	37	12	491	763	780675143	780674845	7.320000e-38	169.0
38	TraesCS2B01G621300	chr3B	85.714	112	15	1	3561	3671	447871255	447871366	2.690000e-22	117.0
39	TraesCS2B01G621300	chr3B	85.455	110	16	0	3564	3673	324263356	324263465	9.680000e-22	115.0
40	TraesCS2B01G621300	chr5A	77.667	300	38	13	491	763	580196328	580196625	5.700000e-34	156.0
41	TraesCS2B01G621300	chr5B	86.726	113	13	2	3561	3671	333557864	333557752	1.610000e-24	124.0
42	TraesCS2B01G621300	chr6D	86.239	109	12	2	3564	3671	217108104	217107998	9.680000e-22	115.0
43	TraesCS2B01G621300	chr5D	86.239	109	12	3	3565	3671	219220402	219220295	9.680000e-22	115.0
44	TraesCS2B01G621300	chr1D	87.640	89	7	2	679	763	455642277	455642365	2.710000e-17	100.0
45	TraesCS2B01G621300	chr1D	97.619	42	1	0	722	763	455534528	455534569	5.910000e-09	73.1

These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

	query	scaffold	start	end	length	rev.comp	avg.bitscore	max.bitscore	avg.percent.identical	query.start	query.end	num_hsp	groupid	homo_length
0	TraesCS2B01G621300	chr2B	795423457	795427715	4258	True	7866.000000	7866	100.000000	1	4259	1	chr2B.!!$R3	4258
1	TraesCS2B01G621300	chr2B	795282556	795283221	665	True	499.000000	499	80.495000	1221	1898	1	chr2B.!!$R2	677
2	TraesCS2B01G621300	chr2A	762016486	762020404	3918	False	2101.000000	5404	96.573333	1	3974	3	chr2A.!!$F1	3973
3	TraesCS2B01G621300	chr2A	762469145	762469824	679	True	649.000000	649	83.977000	1224	1918	1	chr2A.!!$R2	694
4	TraesCS2B01G621300	chr2A	762141485	762144778	3293	False	529.000000	564	81.903500	1239	2750	2	chr2A.!!$F2	1511
5	TraesCS2B01G621300	chr2A	400981843	400984042	2199	True	234.500000	250	96.575500	3990	4259	2	chr2A.!!$R3	269
6	TraesCS2B01G621300	chr2A	402969921	402972115	2194	True	225.000000	243	95.183500	3990	4259	2	chr2A.!!$R4	269
7	TraesCS2B01G621300	chrUn	22744818	22750116	5298	False	1882.500000	2717	88.792000	1	3171	2	chrUn.!!$F2	3170
8	TraesCS2B01G621300	chrUn	22367845	22370045	2200	False	822.666667	1061	89.448333	1135	3171	3	chrUn.!!$F1	2036
9	TraesCS2B01G621300	chr2D	381243755	381244966	1211	True	1537.000000	1537	89.689000	2120	3328	1	chr2D.!!$R2	1208
10	TraesCS2B01G621300	chr2D	381564312	381569518	5206	True	1235.666667	1447	88.973667	1	3171	3	chr2D.!!$R4	3170
11	TraesCS2B01G621300	chr2D	380774307	380775413	1106	False	881.000000	881	81.295000	2062	3156	1	chr2D.!!$F1	1094
12	TraesCS2B01G621300	chr2D	381088207	381092482	4275	True	680.000000	822	81.151000	1221	3156	2	chr2D.!!$R3	1935
13	TraesCS2B01G621300	chr2D	380935354	380938658	3304	False	442.500000	534	82.960500	1221	2413	2	chr2D.!!$F3	1192
14	TraesCS2B01G621300	chr2D	637579099	637583230	4131	False	304.000000	405	89.474000	1224	3166	3	chr2D.!!$F4	1942

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
894	1005	0.763223	AAGTTCGACTGGGTGGAGGT	60.763	55.0	0.0	0.0	0.0	3.85	F
2541	7407	0.753111	CCTTATGCTTGACTGGCCCC	60.753	60.0	0.0	0.0	0.0	5.80	F

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
2736	7602	1.002544	AGCTGCTCAAGTGTTACCTCC	59.997	52.381	0.00	0.0	0.0	4.30	R
4225	11443	0.242825	CTGGAGGCTGCACACATTTG	59.757	55.000	3.93	0.0	0.0	2.32	R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
87	139	6.748333	TCTTTACTGAAAAGAGATGCATGG	57.252	37.500	2.46	0.00	46.88	3.66
88	140	6.240894	TCTTTACTGAAAAGAGATGCATGGT	58.759	36.000	2.46	0.00	46.88	3.55
89	141	7.394016	TCTTTACTGAAAAGAGATGCATGGTA	58.606	34.615	2.46	0.00	46.88	3.25
90	142	6.985188	TTACTGAAAAGAGATGCATGGTAC	57.015	37.500	2.46	0.00	0.00	3.34
91	143	5.171339	ACTGAAAAGAGATGCATGGTACT	57.829	39.130	2.46	0.00	0.00	2.73
92	144	4.940046	ACTGAAAAGAGATGCATGGTACTG	59.060	41.667	2.46	0.00	0.00	2.74
93	145	4.910195	TGAAAAGAGATGCATGGTACTGT	58.090	39.130	2.46	0.00	0.00	3.55
94	146	6.048732	TGAAAAGAGATGCATGGTACTGTA	57.951	37.500	2.46	0.00	0.00	2.74
95	147	6.472016	TGAAAAGAGATGCATGGTACTGTAA	58.528	36.000	2.46	0.00	0.00	2.41
96	148	7.112122	TGAAAAGAGATGCATGGTACTGTAAT	58.888	34.615	2.46	0.00	0.00	1.89
97	149	7.611467	TGAAAAGAGATGCATGGTACTGTAATT	59.389	33.333	2.46	0.00	0.00	1.40
98	150	7.944729	AAAGAGATGCATGGTACTGTAATTT	57.055	32.000	2.46	0.00	0.00	1.82
99	151	6.932356	AGAGATGCATGGTACTGTAATTTG	57.068	37.500	2.46	0.00	0.00	2.32
100	152	6.653020	AGAGATGCATGGTACTGTAATTTGA	58.347	36.000	2.46	0.00	0.00	2.69
101	153	7.112122	AGAGATGCATGGTACTGTAATTTGAA	58.888	34.615	2.46	0.00	0.00	2.69
102	154	7.776969	AGAGATGCATGGTACTGTAATTTGAAT	59.223	33.333	2.46	0.00	0.00	2.57
103	155	8.297470	AGATGCATGGTACTGTAATTTGAATT	57.703	30.769	2.46	0.00	0.00	2.17
104	156	9.407380	AGATGCATGGTACTGTAATTTGAATTA	57.593	29.630	2.46	0.00	0.00	1.40
173	225	7.148523	GCAGTAAAACCTACGCTAGTTTACATT	60.149	37.037	10.66	0.00	35.19	2.71
515	569	1.078848	GGAGTTGCAGTCCATCGCT	60.079	57.895	11.43	0.00	37.65	4.93
570	632	2.702478	TCAAGCGATCATCCAAGGAGAT	59.298	45.455	0.00	0.00	0.00	2.75
755	825	2.484062	GGATGGCCAGCGTTGATGG	61.484	63.158	16.15	0.00	42.66	3.51
756	826	2.440796	ATGGCCAGCGTTGATGGG	60.441	61.111	13.05	0.00	39.79	4.00
758	828	2.124151	GGCCAGCGTTGATGGGAT	60.124	61.111	0.00	0.00	39.79	3.85
759	829	1.148273	GGCCAGCGTTGATGGGATA	59.852	57.895	0.00	0.00	39.79	2.59
760	830	1.166531	GGCCAGCGTTGATGGGATAC	61.167	60.000	0.00	0.00	39.79	2.24
815	926	1.374125	CGCGTTCACATCCACTCCA	60.374	57.895	0.00	0.00	0.00	3.86
818	929	1.354337	CGTTCACATCCACTCCAGCG	61.354	60.000	0.00	0.00	0.00	5.18
819	930	1.375908	TTCACATCCACTCCAGCGC	60.376	57.895	0.00	0.00	0.00	5.92
894	1005	0.763223	AAGTTCGACTGGGTGGAGGT	60.763	55.000	0.00	0.00	0.00	3.85
927	1038	1.032114	GCCTCGGCCTGCAGTTATTT	61.032	55.000	13.81	0.00	34.56	1.40
928	1039	1.463674	CCTCGGCCTGCAGTTATTTT	58.536	50.000	13.81	0.00	0.00	1.82
938	1051	7.203218	GGCCTGCAGTTATTTTATTAAGGAAG	58.797	38.462	13.81	0.00	0.00	3.46
1089	1240	9.978044	AAATCAAATCAAAGAAGAAGAGAAAGG	57.022	29.630	0.00	0.00	0.00	3.11
1373	1545	1.537135	GCCTGCTACTGCTACTGCTAC	60.537	57.143	0.00	0.00	40.48	3.58
1374	1546	2.028130	CCTGCTACTGCTACTGCTACT	58.972	52.381	0.00	0.00	40.48	2.57
1375	1547	3.215151	CCTGCTACTGCTACTGCTACTA	58.785	50.000	0.00	0.00	40.48	1.82
1376	1548	3.003897	CCTGCTACTGCTACTGCTACTAC	59.996	52.174	0.00	0.00	40.48	2.73
1596	1945	4.527583	GAGCCGGAGCAGGAGCAG	62.528	72.222	5.05	0.00	45.49	4.24
1599	1948	3.847602	CCGGAGCAGGAGCAGGAG	61.848	72.222	0.00	0.00	45.49	3.69
1600	1949	4.527583	CGGAGCAGGAGCAGGAGC	62.528	72.222	0.00	0.00	45.49	4.70
1823	2202	4.671766	GCTTGATCAATACTTTTTCGCCGT	60.672	41.667	8.96	0.00	0.00	5.68
2541	7407	0.753111	CCTTATGCTTGACTGGCCCC	60.753	60.000	0.00	0.00	0.00	5.80
2553	7419	3.224324	GGCCCCTCTCGTGCGATA	61.224	66.667	0.00	0.00	0.00	2.92
2730	7596	2.467826	GCTCTCCAACCATCGCTGC	61.468	63.158	0.00	0.00	0.00	5.25
2736	7602	1.440850	CAACCATCGCTGCACAACG	60.441	57.895	0.00	0.00	0.00	4.10
3003	8279	1.040646	AAGGAACGCTGAGAGTGACA	58.959	50.000	0.00	0.00	0.00	3.58
3533	8820	1.596752	TTGGGCATATGCGGCTACG	60.597	57.895	21.04	0.00	43.26	3.51
3617	8904	8.608844	AATGACTCTTATCATATTTCCCGTTC	57.391	34.615	0.00	0.00	38.40	3.95
3940	9227	6.365970	AGAGACAAGGAGATAGAGCAAAAA	57.634	37.500	0.00	0.00	0.00	1.94
3986	9273	8.927675	TTGTACTACAAGTATTTTCCCATGTT	57.072	30.769	0.00	0.00	32.34	2.71
3987	9274	8.330466	TGTACTACAAGTATTTTCCCATGTTG	57.670	34.615	0.00	0.00	32.65	3.33
3988	9275	7.940137	TGTACTACAAGTATTTTCCCATGTTGT	59.060	33.333	0.00	0.00	32.65	3.32
4007	9294	9.689075	CATGTTGTATTGAGAAACAGTATAACG	57.311	33.333	0.00	0.00	41.70	3.18
4011	9298	4.895668	TTGAGAAACAGTATAACGGGGT	57.104	40.909	0.00	0.00	0.00	4.95
4014	9301	5.969423	TGAGAAACAGTATAACGGGGTTAG	58.031	41.667	0.00	0.00	31.29	2.34
4058	9345	2.032860	AACTCCCAGCCATCCGATCG	62.033	60.000	8.51	8.51	0.00	3.69
4070	9357	1.022735	TCCGATCGCTCTGACTTACC	58.977	55.000	10.32	0.00	0.00	2.85
4195	11413	0.237498	GTTCTGTGCGTAAACAGGCC	59.763	55.000	12.90	0.00	46.27	5.19
4225	11443	2.991540	GGCCCACAAAGCCCAGTC	60.992	66.667	0.00	0.00	45.16	3.51

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
105	157	9.725019	TCATGAGTAAAAACATCTTGTACAGAT	57.275	29.630	0.00	0.00	43.80	2.90
106	158	9.725019	ATCATGAGTAAAAACATCTTGTACAGA	57.275	29.630	0.09	0.00	35.33	3.41
111	163	8.299570	GGTGAATCATGAGTAAAAACATCTTGT	58.700	33.333	0.09	0.00	0.00	3.16
112	164	8.517878	AGGTGAATCATGAGTAAAAACATCTTG	58.482	33.333	0.09	0.00	0.00	3.02
113	165	8.517878	CAGGTGAATCATGAGTAAAAACATCTT	58.482	33.333	0.09	0.00	0.00	2.40
114	166	7.667219	ACAGGTGAATCATGAGTAAAAACATCT	59.333	33.333	0.09	0.00	0.00	2.90
115	167	7.752239	CACAGGTGAATCATGAGTAAAAACATC	59.248	37.037	0.09	0.00	0.00	3.06
116	168	7.448161	TCACAGGTGAATCATGAGTAAAAACAT	59.552	33.333	0.09	0.00	36.53	2.71
117	169	6.770303	TCACAGGTGAATCATGAGTAAAAACA	59.230	34.615	0.09	0.00	36.53	2.83
118	170	7.202016	TCACAGGTGAATCATGAGTAAAAAC	57.798	36.000	0.09	0.00	36.53	2.43
119	171	7.815840	TTCACAGGTGAATCATGAGTAAAAA	57.184	32.000	10.63	0.00	43.90	1.94
178	230	5.404096	GCACTCTACTAAACTGAGACTTCC	58.596	45.833	0.00	0.00	0.00	3.46
218	272	4.008539	GCTTGGAAATACTGAAAGCTCG	57.991	45.455	0.00	0.00	40.04	5.03
272	326	3.256631	ACATGGAGGCACAAGAAACATTC	59.743	43.478	0.00	0.00	0.00	2.67
460	514	0.106708	ATGCAAGTGGACACGTCTGT	59.893	50.000	0.00	0.00	36.20	3.41
755	825	5.104900	ACCTAATGAATCCGGCTATGTATCC	60.105	44.000	0.00	0.00	0.00	2.59
756	826	5.978814	ACCTAATGAATCCGGCTATGTATC	58.021	41.667	0.00	0.00	0.00	2.24
758	828	5.818678	AACCTAATGAATCCGGCTATGTA	57.181	39.130	0.00	0.00	0.00	2.29
759	829	4.706842	AACCTAATGAATCCGGCTATGT	57.293	40.909	0.00	0.00	0.00	2.29
760	830	4.216257	CCAAACCTAATGAATCCGGCTATG	59.784	45.833	0.00	0.00	0.00	2.23
825	936	1.753078	GGGCGAATCCTGAAACCCC	60.753	63.158	0.00	0.00	34.39	4.95
876	987	1.152312	ACCTCCACCCAGTCGAACT	60.152	57.895	0.00	0.00	0.00	3.01
894	1005	1.017177	CGAGGCCGAATCGTTTTGGA	61.017	55.000	15.50	0.00	38.53	3.53
927	1038	7.660208	AGTTTCGTTGCTTCTCTTCCTTAATAA	59.340	33.333	0.00	0.00	0.00	1.40
928	1039	7.159372	AGTTTCGTTGCTTCTCTTCCTTAATA	58.841	34.615	0.00	0.00	0.00	0.98
938	1051	5.464389	TGGTACTAAAGTTTCGTTGCTTCTC	59.536	40.000	0.00	0.00	0.00	2.87
1030	1168	2.286713	TGAATTGACGCGTTTCTTGGTG	60.287	45.455	15.53	0.00	0.00	4.17
1373	1545	2.587522	TCTCATCATCGTCCCTGGTAG	58.412	52.381	0.00	0.00	0.00	3.18
1374	1546	2.748209	TCTCATCATCGTCCCTGGTA	57.252	50.000	0.00	0.00	0.00	3.25
1375	1547	1.866015	TTCTCATCATCGTCCCTGGT	58.134	50.000	0.00	0.00	0.00	4.00
1376	1548	2.366590	TGATTCTCATCATCGTCCCTGG	59.633	50.000	0.00	0.00	34.22	4.45
1404	1582	3.614616	GGAGCATCAAGTTGAAGTACTCG	59.385	47.826	10.14	0.00	36.25	4.18
1613	1986	4.444388	TGAAAAGAGTCGACAAGTTGATCG	59.556	41.667	19.50	14.47	39.72	3.69
1665	2038	0.550914	ACTTGGCCAAGGTGTTCTCA	59.449	50.000	41.04	8.36	42.53	3.27
1823	2202	2.767644	TTCCCAGTATCTCCGATCCA	57.232	50.000	0.00	0.00	0.00	3.41
2013	4217	1.153539	TCCCCTTCAAACACCCATGA	58.846	50.000	0.00	0.00	0.00	3.07
2541	7407	1.914634	AAGCAACTATCGCACGAGAG	58.085	50.000	12.73	12.73	39.18	3.20
2553	7419	1.075374	TCTACATGGCCCAAAGCAACT	59.925	47.619	0.00	0.00	46.50	3.16
2730	7596	2.800544	CTCAAGTGTTACCTCCGTTGTG	59.199	50.000	0.00	0.00	0.00	3.33
2736	7602	1.002544	AGCTGCTCAAGTGTTACCTCC	59.997	52.381	0.00	0.00	0.00	4.30
3003	8279	4.984146	GGACTTCCCATAGGCTTCTATT	57.016	45.455	0.00	0.00	31.71	1.73
3117	8393	0.766674	ACCAGGCTACAACCACCTCA	60.767	55.000	0.00	0.00	0.00	3.86
3242	8528	8.806146	AGACTTTTAACAAACCAGATTGCATAT	58.194	29.630	0.00	0.00	33.52	1.78
3429	8716	1.831389	CTGCCACAACAACGAGTCCG	61.831	60.000	0.00	0.00	42.50	4.79
3533	8820	1.287730	CGAGCAAGGAGTGTGCAGAC	61.288	60.000	5.72	5.72	44.74	3.51
3974	9261	7.961351	TGTTTCTCAATACAACATGGGAAAAT	58.039	30.769	2.65	0.00	44.98	1.82
3975	9262	7.069331	ACTGTTTCTCAATACAACATGGGAAAA	59.931	33.333	2.65	0.00	44.98	2.29
3976	9263	6.549364	ACTGTTTCTCAATACAACATGGGAAA	59.451	34.615	0.00	0.00	42.22	3.13
3977	9264	6.068010	ACTGTTTCTCAATACAACATGGGAA	58.932	36.000	0.00	0.00	34.33	3.97
3978	9265	5.630121	ACTGTTTCTCAATACAACATGGGA	58.370	37.500	0.00	0.00	30.18	4.37
3979	9266	5.964958	ACTGTTTCTCAATACAACATGGG	57.035	39.130	0.00	0.00	30.18	4.00
3980	9267	9.988350	GTTATACTGTTTCTCAATACAACATGG	57.012	33.333	0.00	0.00	30.18	3.66
3981	9268	9.689075	CGTTATACTGTTTCTCAATACAACATG	57.311	33.333	0.00	0.00	30.18	3.21
3982	9269	8.879759	CCGTTATACTGTTTCTCAATACAACAT	58.120	33.333	0.00	0.00	30.18	2.71
3983	9270	7.332430	CCCGTTATACTGTTTCTCAATACAACA	59.668	37.037	0.00	0.00	0.00	3.33
3984	9271	7.201582	CCCCGTTATACTGTTTCTCAATACAAC	60.202	40.741	0.00	0.00	0.00	3.32
3985	9272	6.819649	CCCCGTTATACTGTTTCTCAATACAA	59.180	38.462	0.00	0.00	0.00	2.41
3986	9273	6.070653	ACCCCGTTATACTGTTTCTCAATACA	60.071	38.462	0.00	0.00	0.00	2.29
3987	9274	6.343703	ACCCCGTTATACTGTTTCTCAATAC	58.656	40.000	0.00	0.00	0.00	1.89
3988	9275	6.549433	ACCCCGTTATACTGTTTCTCAATA	57.451	37.500	0.00	0.00	0.00	1.90
4007	9294	3.564775	GGGCTCCTAGCTAACCCC	58.435	66.667	8.86	5.92	41.99	4.95
4011	9298	0.691078	CTGTGGGGGCTCCTAGCTAA	60.691	60.000	4.32	0.00	41.99	3.09
4014	9301	4.182433	GCTGTGGGGGCTCCTAGC	62.182	72.222	15.64	15.64	41.46	3.42
4034	9321	2.017049	CGGATGGCTGGGAGTTTTAAG	58.983	52.381	0.00	0.00	0.00	1.85
4058	9345	1.174783	TCGTGAGGGTAAGTCAGAGC	58.825	55.000	0.00	0.00	0.00	4.09
4195	11413	2.202756	GGGCCTTCGAGCTGTACG	60.203	66.667	0.84	0.00	0.00	3.67
4225	11443	0.242825	CTGGAGGCTGCACACATTTG	59.757	55.000	3.93	0.00	0.00	2.32

Based at the University of Bristol with support from BBSRC.

AutoCloner maintained by Alex Coulton.