Multiple sequence alignment - TraesCS2B01G620800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G620800 chr2B 100.000 5356 0 0 1 5356 795055988 795050633 0.000000e+00 9891
1 TraesCS2B01G620800 chr2D 93.769 4221 243 11 174 4376 637641689 637637471 0.000000e+00 6320
2 TraesCS2B01G620800 chr2D 90.238 799 51 13 4374 5154 637637434 637636645 0.000000e+00 1018
3 TraesCS2B01G620800 chr2D 95.000 100 5 0 5151 5250 98693599 98693500 2.000000e-34 158
4 TraesCS2B01G620800 chr2D 94.118 102 6 0 5255 5356 637636636 637636535 7.180000e-34 156
5 TraesCS2B01G620800 chr2A 89.628 3490 315 24 895 4376 762309002 762312452 0.000000e+00 4396
6 TraesCS2B01G620800 chr2A 87.905 802 54 10 4374 5154 762312489 762313268 0.000000e+00 904
7 TraesCS2B01G620800 chr2A 96.000 100 4 0 5152 5251 68155823 68155922 4.290000e-36 163
8 TraesCS2B01G620800 chr2A 91.743 109 9 0 5248 5356 762313267 762313375 9.290000e-33 152
9 TraesCS2B01G620800 chr7D 82.753 3334 494 51 1078 4374 575928466 575925177 0.000000e+00 2896
10 TraesCS2B01G620800 chr7D 82.966 2771 407 39 1088 3837 5657058 5654332 0.000000e+00 2442
11 TraesCS2B01G620800 chr4A 81.881 3339 521 58 1078 4374 736140658 736143954 0.000000e+00 2737
12 TraesCS2B01G620800 chr4A 79.964 3329 564 71 1078 4376 736802974 736806229 0.000000e+00 2357
13 TraesCS2B01G620800 chr4A 82.588 2550 406 23 1299 3832 734576762 734579289 0.000000e+00 2215
14 TraesCS2B01G620800 chr4A 82.050 2546 400 28 1299 3832 735759399 735761899 0.000000e+00 2117
15 TraesCS2B01G620800 chr4A 80.730 2631 428 53 1574 4182 736459168 736456595 0.000000e+00 1977
16 TraesCS2B01G620800 chr4A 82.890 1391 222 11 2089 3471 736790590 736791972 0.000000e+00 1236
17 TraesCS2B01G620800 chr4A 87.797 631 72 5 3206 3832 735520556 735519927 0.000000e+00 734
18 TraesCS2B01G620800 chr4A 81.046 459 82 4 3917 4374 735762042 735762496 1.420000e-95 361
19 TraesCS2B01G620800 chr4A 81.707 164 23 6 266 427 736139976 736140134 4.350000e-26 130
20 TraesCS2B01G620800 chr7A 81.630 3326 499 67 1088 4374 666797860 666794608 0.000000e+00 2654
21 TraesCS2B01G620800 chr5B 82.253 2778 415 49 1078 3830 98510979 98513703 0.000000e+00 2327
22 TraesCS2B01G620800 chr5B 85.823 395 52 3 3956 4349 98513795 98514186 2.980000e-112 416
23 TraesCS2B01G620800 chr5B 92.174 115 6 3 5141 5253 203503039 203503152 5.550000e-35 159
24 TraesCS2B01G620800 chr3D 93.805 113 5 2 5147 5258 71512805 71512916 9.230000e-38 169
25 TraesCS2B01G620800 chr4D 96.939 98 3 0 5152 5249 13198379 13198282 1.190000e-36 165
26 TraesCS2B01G620800 chr3B 95.146 103 4 1 5152 5253 822536377 822536275 1.540000e-35 161
27 TraesCS2B01G620800 chr1D 95.098 102 5 0 5150 5251 485718653 485718754 1.540000e-35 161
28 TraesCS2B01G620800 chr1D 92.174 115 6 3 5141 5253 209519510 209519397 5.550000e-35 159
29 TraesCS2B01G620800 chrUn 95.098 102 4 1 5153 5253 362465803 362465904 5.550000e-35 159


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G620800 chr2B 795050633 795055988 5355 True 9891.000000 9891 100.000000 1 5356 1 chr2B.!!$R1 5355
1 TraesCS2B01G620800 chr2D 637636535 637641689 5154 True 2498.000000 6320 92.708333 174 5356 3 chr2D.!!$R2 5182
2 TraesCS2B01G620800 chr2A 762309002 762313375 4373 False 1817.333333 4396 89.758667 895 5356 3 chr2A.!!$F2 4461
3 TraesCS2B01G620800 chr7D 575925177 575928466 3289 True 2896.000000 2896 82.753000 1078 4374 1 chr7D.!!$R2 3296
4 TraesCS2B01G620800 chr7D 5654332 5657058 2726 True 2442.000000 2442 82.966000 1088 3837 1 chr7D.!!$R1 2749
5 TraesCS2B01G620800 chr4A 736802974 736806229 3255 False 2357.000000 2357 79.964000 1078 4376 1 chr4A.!!$F3 3298
6 TraesCS2B01G620800 chr4A 734576762 734579289 2527 False 2215.000000 2215 82.588000 1299 3832 1 chr4A.!!$F1 2533
7 TraesCS2B01G620800 chr4A 736456595 736459168 2573 True 1977.000000 1977 80.730000 1574 4182 1 chr4A.!!$R2 2608
8 TraesCS2B01G620800 chr4A 736139976 736143954 3978 False 1433.500000 2737 81.794000 266 4374 2 chr4A.!!$F5 4108
9 TraesCS2B01G620800 chr4A 735759399 735762496 3097 False 1239.000000 2117 81.548000 1299 4374 2 chr4A.!!$F4 3075
10 TraesCS2B01G620800 chr4A 736790590 736791972 1382 False 1236.000000 1236 82.890000 2089 3471 1 chr4A.!!$F2 1382
11 TraesCS2B01G620800 chr4A 735519927 735520556 629 True 734.000000 734 87.797000 3206 3832 1 chr4A.!!$R1 626
12 TraesCS2B01G620800 chr7A 666794608 666797860 3252 True 2654.000000 2654 81.630000 1088 4374 1 chr7A.!!$R1 3286
13 TraesCS2B01G620800 chr5B 98510979 98514186 3207 False 1371.500000 2327 84.038000 1078 4349 2 chr5B.!!$F2 3271

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
141 142 0.107268 TGCGCTGGACAGATATGCAT 59.893 50.0 9.73 3.79 0.00 3.96 F
686 694 0.667184 CGCCCAATTCTGCAACAACC 60.667 55.0 0.00 0.00 0.00 3.77 F
687 695 0.681175 GCCCAATTCTGCAACAACCT 59.319 50.0 0.00 0.00 0.00 3.50 F
2614 3034 0.704076 CATCCCCTCCCTGACCAAAA 59.296 55.0 0.00 0.00 0.00 2.44 F
3717 4175 0.314618 TTGTTGCGCATGTTGCTGAT 59.685 45.0 12.75 0.00 42.25 2.90 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1821 2234 0.034089 ATGGAGGAAAAGGGCCTTCG 60.034 55.000 21.20 0.00 35.44 3.79 R
2577 2997 0.040058 TGCTAAGTACCTCCGGTGGA 59.960 55.000 28.83 9.86 36.19 4.02 R
2628 3048 3.582647 TGGAGCCACTCAGAGAATTGTTA 59.417 43.478 3.79 0.00 31.08 2.41 R
4164 4701 0.035739 GGGTTTCCGCTGTAGGTTGA 59.964 55.000 0.00 0.00 0.00 3.18 R
4529 5131 0.183014 TAGGAGTAGGAGCCACTCGG 59.817 60.000 10.73 0.00 42.79 4.63 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
40 41 3.840890 TTTTGGTACGCATGGTGATTC 57.159 42.857 0.00 0.00 0.00 2.52
41 42 2.779755 TTGGTACGCATGGTGATTCT 57.220 45.000 0.00 0.00 0.00 2.40
42 43 2.779755 TGGTACGCATGGTGATTCTT 57.220 45.000 0.00 0.00 0.00 2.52
43 44 3.066291 TGGTACGCATGGTGATTCTTT 57.934 42.857 0.00 0.00 0.00 2.52
44 45 2.746904 TGGTACGCATGGTGATTCTTTG 59.253 45.455 0.00 0.00 0.00 2.77
45 46 2.097466 GGTACGCATGGTGATTCTTTGG 59.903 50.000 0.00 0.00 0.00 3.28
46 47 0.527565 ACGCATGGTGATTCTTTGGC 59.472 50.000 0.00 0.00 0.00 4.52
47 48 0.527113 CGCATGGTGATTCTTTGGCA 59.473 50.000 0.00 0.00 0.00 4.92
48 49 1.135527 CGCATGGTGATTCTTTGGCAT 59.864 47.619 0.00 0.00 0.00 4.40
49 50 2.797087 CGCATGGTGATTCTTTGGCATC 60.797 50.000 0.00 0.00 0.00 3.91
50 51 2.429610 GCATGGTGATTCTTTGGCATCT 59.570 45.455 0.00 0.00 0.00 2.90
51 52 3.737047 GCATGGTGATTCTTTGGCATCTG 60.737 47.826 0.00 0.00 0.00 2.90
52 53 2.449464 TGGTGATTCTTTGGCATCTGG 58.551 47.619 0.00 0.00 0.00 3.86
53 54 1.135721 GGTGATTCTTTGGCATCTGGC 59.864 52.381 0.00 0.00 43.74 4.85
63 64 3.499737 CATCTGGCCCGTTGCGAC 61.500 66.667 0.00 0.00 42.61 5.19
72 73 2.104331 CGTTGCGACGGATAGCCT 59.896 61.111 19.10 0.00 45.32 4.58
73 74 1.518572 CGTTGCGACGGATAGCCTT 60.519 57.895 19.10 0.00 45.32 4.35
74 75 1.082117 CGTTGCGACGGATAGCCTTT 61.082 55.000 19.10 0.00 45.32 3.11
75 76 0.651031 GTTGCGACGGATAGCCTTTC 59.349 55.000 0.00 0.00 0.00 2.62
76 77 0.535335 TTGCGACGGATAGCCTTTCT 59.465 50.000 0.00 0.00 0.00 2.52
77 78 1.395635 TGCGACGGATAGCCTTTCTA 58.604 50.000 0.00 0.00 0.00 2.10
78 79 1.337071 TGCGACGGATAGCCTTTCTAG 59.663 52.381 0.00 0.00 0.00 2.43
79 80 1.931263 GCGACGGATAGCCTTTCTAGC 60.931 57.143 0.00 0.00 33.05 3.42
80 81 1.609555 CGACGGATAGCCTTTCTAGCT 59.390 52.381 0.00 0.00 44.49 3.32
81 82 2.034812 CGACGGATAGCCTTTCTAGCTT 59.965 50.000 0.00 0.00 41.83 3.74
82 83 3.491104 CGACGGATAGCCTTTCTAGCTTT 60.491 47.826 0.00 0.00 41.83 3.51
83 84 4.261489 CGACGGATAGCCTTTCTAGCTTTA 60.261 45.833 0.00 0.00 41.83 1.85
84 85 4.946445 ACGGATAGCCTTTCTAGCTTTAC 58.054 43.478 0.00 0.00 41.83 2.01
85 86 4.650131 ACGGATAGCCTTTCTAGCTTTACT 59.350 41.667 0.00 0.00 41.83 2.24
86 87 4.985409 CGGATAGCCTTTCTAGCTTTACTG 59.015 45.833 0.00 0.00 41.83 2.74
87 88 5.452077 CGGATAGCCTTTCTAGCTTTACTGT 60.452 44.000 0.00 0.00 41.83 3.55
88 89 5.755861 GGATAGCCTTTCTAGCTTTACTGTG 59.244 44.000 0.00 0.00 41.83 3.66
89 90 4.891992 AGCCTTTCTAGCTTTACTGTGA 57.108 40.909 0.00 0.00 37.24 3.58
90 91 5.228945 AGCCTTTCTAGCTTTACTGTGAA 57.771 39.130 0.00 0.00 37.24 3.18
91 92 5.621193 AGCCTTTCTAGCTTTACTGTGAAA 58.379 37.500 0.00 0.00 37.24 2.69
92 93 6.241645 AGCCTTTCTAGCTTTACTGTGAAAT 58.758 36.000 0.00 0.00 37.24 2.17
93 94 6.372937 AGCCTTTCTAGCTTTACTGTGAAATC 59.627 38.462 0.00 0.00 37.24 2.17
94 95 6.149474 GCCTTTCTAGCTTTACTGTGAAATCA 59.851 38.462 0.00 0.00 34.18 2.57
95 96 7.625185 GCCTTTCTAGCTTTACTGTGAAATCAG 60.625 40.741 0.00 0.00 40.80 2.90
97 98 8.677148 TTTCTAGCTTTACTGTGAAATCAGTT 57.323 30.769 4.72 0.00 44.92 3.16
98 99 9.772973 TTTCTAGCTTTACTGTGAAATCAGTTA 57.227 29.630 4.72 0.00 44.92 2.24
99 100 9.772973 TTCTAGCTTTACTGTGAAATCAGTTAA 57.227 29.630 4.72 2.09 44.92 2.01
100 101 9.772973 TCTAGCTTTACTGTGAAATCAGTTAAA 57.227 29.630 4.72 3.99 44.92 1.52
103 104 9.289782 AGCTTTACTGTGAAATCAGTTAAATCT 57.710 29.630 4.72 3.38 44.92 2.40
109 110 9.739276 ACTGTGAAATCAGTTAAATCTATCCAA 57.261 29.630 0.00 0.00 44.92 3.53
111 112 9.177608 TGTGAAATCAGTTAAATCTATCCAAGG 57.822 33.333 0.00 0.00 0.00 3.61
112 113 9.396022 GTGAAATCAGTTAAATCTATCCAAGGA 57.604 33.333 0.00 0.00 0.00 3.36
113 114 9.618890 TGAAATCAGTTAAATCTATCCAAGGAG 57.381 33.333 0.00 0.00 0.00 3.69
114 115 8.986929 AAATCAGTTAAATCTATCCAAGGAGG 57.013 34.615 0.00 0.00 39.47 4.30
115 116 6.500589 TCAGTTAAATCTATCCAAGGAGGG 57.499 41.667 0.00 0.00 38.24 4.30
116 117 5.369699 TCAGTTAAATCTATCCAAGGAGGGG 59.630 44.000 0.00 0.00 38.24 4.79
117 118 5.369699 CAGTTAAATCTATCCAAGGAGGGGA 59.630 44.000 0.00 0.00 39.14 4.81
118 119 5.976870 AGTTAAATCTATCCAAGGAGGGGAA 59.023 40.000 0.00 0.00 38.09 3.97
119 120 6.101881 AGTTAAATCTATCCAAGGAGGGGAAG 59.898 42.308 0.00 0.00 38.09 3.46
120 121 1.807814 TCTATCCAAGGAGGGGAAGC 58.192 55.000 0.00 0.00 38.09 3.86
121 122 0.767998 CTATCCAAGGAGGGGAAGCC 59.232 60.000 0.00 0.00 38.09 4.35
122 123 0.346932 TATCCAAGGAGGGGAAGCCT 59.653 55.000 0.00 0.00 38.09 4.58
123 124 1.284841 ATCCAAGGAGGGGAAGCCTG 61.285 60.000 0.00 0.00 38.09 4.85
124 125 2.044551 CAAGGAGGGGAAGCCTGC 60.045 66.667 0.00 0.00 34.00 4.85
125 126 3.721706 AAGGAGGGGAAGCCTGCG 61.722 66.667 0.00 0.00 34.00 5.18
135 136 3.397439 AGCCTGCGCTGGACAGAT 61.397 61.111 34.52 12.63 46.19 2.90
136 137 2.060383 AGCCTGCGCTGGACAGATA 61.060 57.895 34.52 0.00 46.19 1.98
137 138 1.070445 GCCTGCGCTGGACAGATAT 59.930 57.895 34.52 0.00 37.32 1.63
138 139 1.226686 GCCTGCGCTGGACAGATATG 61.227 60.000 34.52 7.23 37.32 1.78
139 140 1.226686 CCTGCGCTGGACAGATATGC 61.227 60.000 27.72 1.90 37.32 3.14
140 141 0.531311 CTGCGCTGGACAGATATGCA 60.531 55.000 9.73 6.22 37.32 3.96
141 142 0.107268 TGCGCTGGACAGATATGCAT 59.893 50.000 9.73 3.79 0.00 3.96
142 143 0.795085 GCGCTGGACAGATATGCATC 59.205 55.000 0.19 0.00 0.00 3.91
143 144 1.436600 CGCTGGACAGATATGCATCC 58.563 55.000 0.19 0.00 0.00 3.51
144 145 1.270465 CGCTGGACAGATATGCATCCA 60.270 52.381 0.19 2.87 38.94 3.41
148 149 3.812262 TGGACAGATATGCATCCAGTTG 58.188 45.455 0.19 0.00 36.30 3.16
149 150 3.200605 TGGACAGATATGCATCCAGTTGT 59.799 43.478 0.19 2.06 36.30 3.32
150 151 3.562973 GGACAGATATGCATCCAGTTGTG 59.437 47.826 0.19 0.00 0.00 3.33
151 152 4.194640 GACAGATATGCATCCAGTTGTGT 58.805 43.478 0.19 0.00 0.00 3.72
152 153 3.943381 ACAGATATGCATCCAGTTGTGTG 59.057 43.478 0.19 0.00 0.00 3.82
153 154 2.947652 AGATATGCATCCAGTTGTGTGC 59.052 45.455 0.19 0.00 38.05 4.57
154 155 2.495155 TATGCATCCAGTTGTGTGCT 57.505 45.000 0.19 0.00 38.37 4.40
155 156 1.624336 ATGCATCCAGTTGTGTGCTT 58.376 45.000 0.00 0.00 38.37 3.91
156 157 1.401761 TGCATCCAGTTGTGTGCTTT 58.598 45.000 0.00 0.00 38.37 3.51
157 158 1.337703 TGCATCCAGTTGTGTGCTTTC 59.662 47.619 0.00 0.00 38.37 2.62
158 159 1.610522 GCATCCAGTTGTGTGCTTTCT 59.389 47.619 0.00 0.00 34.85 2.52
159 160 2.035066 GCATCCAGTTGTGTGCTTTCTT 59.965 45.455 0.00 0.00 34.85 2.52
160 161 3.635331 CATCCAGTTGTGTGCTTTCTTG 58.365 45.455 0.00 0.00 0.00 3.02
161 162 2.997980 TCCAGTTGTGTGCTTTCTTGA 58.002 42.857 0.00 0.00 0.00 3.02
162 163 2.945008 TCCAGTTGTGTGCTTTCTTGAG 59.055 45.455 0.00 0.00 0.00 3.02
163 164 2.684881 CCAGTTGTGTGCTTTCTTGAGT 59.315 45.455 0.00 0.00 0.00 3.41
164 165 3.242870 CCAGTTGTGTGCTTTCTTGAGTC 60.243 47.826 0.00 0.00 0.00 3.36
165 166 2.945668 AGTTGTGTGCTTTCTTGAGTCC 59.054 45.455 0.00 0.00 0.00 3.85
166 167 1.967319 TGTGTGCTTTCTTGAGTCCC 58.033 50.000 0.00 0.00 0.00 4.46
167 168 1.490490 TGTGTGCTTTCTTGAGTCCCT 59.510 47.619 0.00 0.00 0.00 4.20
168 169 2.092429 TGTGTGCTTTCTTGAGTCCCTT 60.092 45.455 0.00 0.00 0.00 3.95
169 170 2.550180 GTGTGCTTTCTTGAGTCCCTTC 59.450 50.000 0.00 0.00 0.00 3.46
170 171 2.439507 TGTGCTTTCTTGAGTCCCTTCT 59.560 45.455 0.00 0.00 0.00 2.85
171 172 2.810852 GTGCTTTCTTGAGTCCCTTCTG 59.189 50.000 0.00 0.00 0.00 3.02
172 173 2.439507 TGCTTTCTTGAGTCCCTTCTGT 59.560 45.455 0.00 0.00 0.00 3.41
183 184 4.104086 AGTCCCTTCTGTAACCATCATGA 58.896 43.478 0.00 0.00 0.00 3.07
194 195 7.510343 TCTGTAACCATCATGATTCCTGAGATA 59.490 37.037 5.16 0.00 0.00 1.98
225 226 7.448161 TGATTTCATTGGCTTTTCTGACTAAGA 59.552 33.333 3.59 0.00 0.00 2.10
240 241 6.936900 TCTGACTAAGAGGGTTTTCAATCTTG 59.063 38.462 0.00 0.00 34.08 3.02
242 243 4.767409 ACTAAGAGGGTTTTCAATCTTGGC 59.233 41.667 0.00 0.00 34.64 4.52
252 253 6.405538 GTTTTCAATCTTGGCCCATATCAAA 58.594 36.000 0.00 0.00 0.00 2.69
295 297 5.504010 CGCCACATGAACATAAAGTCCATAC 60.504 44.000 0.00 0.00 0.00 2.39
353 355 5.125417 CGTTCCCTGTAACATCATTGGAATT 59.875 40.000 0.00 0.00 33.74 2.17
421 423 5.126396 TCAGGATATCGCACTAGTCAATG 57.874 43.478 0.00 0.00 0.00 2.82
428 430 3.317150 TCGCACTAGTCAATGTCACAAG 58.683 45.455 0.00 0.00 0.00 3.16
440 442 5.827267 TCAATGTCACAAGTCATTTTCTCCA 59.173 36.000 0.00 0.00 32.41 3.86
510 512 2.554370 ACTTAGCACGTGCCCTTTTA 57.446 45.000 35.51 18.93 43.38 1.52
511 513 2.423577 ACTTAGCACGTGCCCTTTTAG 58.576 47.619 35.51 21.83 43.38 1.85
512 514 2.038033 ACTTAGCACGTGCCCTTTTAGA 59.962 45.455 35.51 12.32 43.38 2.10
514 516 1.523758 AGCACGTGCCCTTTTAGAAG 58.476 50.000 35.51 0.00 43.38 2.85
518 525 3.364664 GCACGTGCCCTTTTAGAAGTTAC 60.365 47.826 30.12 0.00 34.31 2.50
568 575 9.542462 TCTCTCGTAAAAATTATTAGGTCCATG 57.458 33.333 0.00 0.00 0.00 3.66
598 606 6.785337 ATGAAATCATGATCAGCCTTTTGA 57.215 33.333 9.06 0.00 34.83 2.69
664 672 3.055891 GCACCCAATGGAAAAATACAGCT 60.056 43.478 0.00 0.00 34.81 4.24
673 681 0.965439 AAAATACAGCTTGCGCCCAA 59.035 45.000 4.18 0.00 36.60 4.12
686 694 0.667184 CGCCCAATTCTGCAACAACC 60.667 55.000 0.00 0.00 0.00 3.77
687 695 0.681175 GCCCAATTCTGCAACAACCT 59.319 50.000 0.00 0.00 0.00 3.50
688 696 1.070601 GCCCAATTCTGCAACAACCTT 59.929 47.619 0.00 0.00 0.00 3.50
691 699 3.560896 CCCAATTCTGCAACAACCTTTTG 59.439 43.478 0.00 0.00 38.83 2.44
694 702 2.957491 TCTGCAACAACCTTTTGTGG 57.043 45.000 0.00 0.00 45.69 4.17
695 703 2.175202 TCTGCAACAACCTTTTGTGGT 58.825 42.857 0.00 0.00 45.69 4.16
793 803 1.354168 TGGGACCCCGTTTTTCTCCA 61.354 55.000 8.45 0.00 39.42 3.86
814 824 6.577103 TCCAAAATAATTATTGCCATTGCGA 58.423 32.000 11.42 8.62 41.78 5.10
855 865 6.321181 ACACTTCAGTTTGTGGAATTGTATGT 59.679 34.615 0.00 0.00 35.83 2.29
859 869 5.009510 TCAGTTTGTGGAATTGTATGTGGTG 59.990 40.000 0.00 0.00 0.00 4.17
959 970 6.953520 TCACCAAAACTTGAAATCCATAGGAT 59.046 34.615 0.00 0.00 45.46 3.24
985 996 4.935808 CCTCCAGCTTATTTAACGACTTGT 59.064 41.667 0.00 0.00 0.00 3.16
1564 1977 1.548357 GCCTGCTTCTCTGGGTCTCA 61.548 60.000 0.00 0.00 34.64 3.27
1632 2045 4.202264 GGTGATATTCCCATGTCGTTCTCT 60.202 45.833 0.00 0.00 0.00 3.10
1689 2102 2.101640 ACCACTTCCTTGGCCAAATT 57.898 45.000 20.91 0.00 40.77 1.82
1732 2145 5.771469 TGACATCATTGACACATTTGGAAC 58.229 37.500 0.00 0.00 0.00 3.62
1765 2178 1.133668 GCTTCACTGGCCATATCCCTT 60.134 52.381 5.51 0.00 0.00 3.95
1773 2186 2.641321 TGGCCATATCCCTTCAGATCTG 59.359 50.000 17.07 17.07 0.00 2.90
1821 2234 8.246180 ACATTTGATGTCATGGATAACAAACTC 58.754 33.333 0.00 0.00 39.92 3.01
1914 2329 0.809241 CAGGATCTCTGCCGCTTGAC 60.809 60.000 0.00 0.00 36.60 3.18
1957 2376 3.492482 GCTAAGTGTTTTGGCCACACATT 60.492 43.478 22.80 15.03 46.01 2.71
2036 2455 1.879380 TGTGCTTCTTGGTGGAAATCG 59.121 47.619 0.00 0.00 0.00 3.34
2069 2488 0.965363 ATTCCACGGGACATTGGCAC 60.965 55.000 0.00 0.00 31.65 5.01
2071 2490 2.282110 CACGGGACATTGGCACCA 60.282 61.111 0.00 0.00 0.00 4.17
2106 2525 8.570068 TGATAGTATTTTTGGTAGGGAACAAC 57.430 34.615 0.00 0.00 0.00 3.32
2145 2564 4.315993 AGCCTAAGGATTGGGATTTCCTA 58.684 43.478 0.00 0.00 45.74 2.94
2148 2567 7.563623 AGCCTAAGGATTGGGATTTCCTAACT 61.564 42.308 0.00 0.00 45.74 2.24
2211 2630 3.704566 AGAAAAACAACCTTGAAGGGGTC 59.295 43.478 16.78 1.95 40.58 4.46
2342 2762 1.336632 ATCCTCTCCCTGCAGCAGAC 61.337 60.000 24.90 0.00 32.44 3.51
2410 2830 4.746466 CCTCCAGTATCTTGACCTATCCT 58.254 47.826 0.00 0.00 0.00 3.24
2442 2862 1.335810 CATGGGCAGATTCCACAATCG 59.664 52.381 0.00 0.00 43.05 3.34
2517 2937 2.119655 CAGCATCCCAGCAAGCCTC 61.120 63.158 0.00 0.00 36.85 4.70
2531 2951 1.115467 AGCCTCGGTAATCTCACAGG 58.885 55.000 0.00 0.00 0.00 4.00
2565 2985 6.261435 TCTGGATCTTTCTGGTAACTCCTTA 58.739 40.000 0.00 0.00 37.07 2.69
2614 3034 0.704076 CATCCCCTCCCTGACCAAAA 59.296 55.000 0.00 0.00 0.00 2.44
2628 3048 5.310409 TGACCAAAATTCTCAACCTCTCT 57.690 39.130 0.00 0.00 0.00 3.10
2709 3129 5.528690 CACAATTGACCTATCCATGAACGAT 59.471 40.000 13.59 0.00 0.00 3.73
2736 3156 2.376518 TGGTGAAATCCCAGAAGCTCTT 59.623 45.455 0.00 0.00 0.00 2.85
2831 3251 4.215185 GTCTTCTTTGAGAGGCCTTGAAAG 59.785 45.833 6.77 15.36 0.00 2.62
2852 3272 7.944554 TGAAAGGTTGGATCTTTCTAGAAACAT 59.055 33.333 13.99 9.67 46.02 2.71
2853 3273 7.693969 AAGGTTGGATCTTTCTAGAAACATG 57.306 36.000 13.99 5.30 33.20 3.21
2907 3327 7.668492 AGAACTTCAACCTTCTAACGTATCTT 58.332 34.615 0.00 0.00 0.00 2.40
2940 3360 0.325860 ACAACCTATCTGGCCCCGTA 60.326 55.000 0.00 0.00 40.22 4.02
3044 3481 0.982704 CTCCCTCCATGCCCAGATAG 59.017 60.000 0.00 0.00 0.00 2.08
3152 3598 4.190001 ACTGCATGCTACTTGATGAAGAG 58.810 43.478 20.33 5.26 30.60 2.85
3314 3766 5.863965 TGTGTACATTGGAACTCTGAATCA 58.136 37.500 0.00 0.00 0.00 2.57
3321 3773 6.318144 ACATTGGAACTCTGAATCATGATGAC 59.682 38.462 9.46 7.53 0.00 3.06
3360 3812 5.243283 AGCAATCAAAGTTCTCAATCTTGCT 59.757 36.000 0.00 0.00 41.23 3.91
3717 4175 0.314618 TTGTTGCGCATGTTGCTGAT 59.685 45.000 12.75 0.00 42.25 2.90
3750 4208 5.009410 AGCAAAGATAATGCATACTGAAGCC 59.991 40.000 0.00 0.00 46.22 4.35
3801 4259 3.753272 GCAGCTCACTTGTGATTAAAGGA 59.247 43.478 3.79 0.00 0.00 3.36
3832 4290 4.674306 TTGCACCAGGTCAGCAAA 57.326 50.000 13.69 0.17 44.39 3.68
3880 4407 4.433186 TGTGCAGTAAATTTTCCATCGG 57.567 40.909 0.00 0.00 0.00 4.18
3896 4423 7.548196 TTCCATCGGTAATTAACATTCACTC 57.452 36.000 0.64 0.00 0.00 3.51
3905 4432 6.949578 AATTAACATTCACTCGCCAATTTG 57.050 33.333 0.00 0.00 0.00 2.32
3910 4437 4.759693 ACATTCACTCGCCAATTTGAACTA 59.240 37.500 0.00 0.00 30.99 2.24
3913 4445 5.103290 TCACTCGCCAATTTGAACTAAAC 57.897 39.130 0.00 0.00 0.00 2.01
3914 4446 3.906008 CACTCGCCAATTTGAACTAAACG 59.094 43.478 0.00 0.00 0.00 3.60
3945 4478 8.594881 ATCCGTCAAATTTATGTCTACTCATC 57.405 34.615 0.00 0.00 0.00 2.92
3948 4481 7.254455 CCGTCAAATTTATGTCTACTCATCACC 60.254 40.741 0.00 0.00 0.00 4.02
3962 4499 6.875972 ACTCATCACCTAGTCAATAAACCT 57.124 37.500 0.00 0.00 0.00 3.50
3966 4503 7.685481 TCATCACCTAGTCAATAAACCTTTGA 58.315 34.615 0.00 0.00 0.00 2.69
4164 4701 6.325028 TCTGCTGGAAGTATTAGATGCTAGTT 59.675 38.462 0.00 0.00 35.30 2.24
4206 4743 8.150945 ACCCGCAACATATCATAGATATATTCC 58.849 37.037 0.00 0.00 0.00 3.01
4328 4870 2.203195 TGCACCGCTCATATGCCC 60.203 61.111 0.00 0.00 38.63 5.36
4392 4975 1.071699 AGTGGCGATGTGGTTACAAGT 59.928 47.619 0.00 0.00 40.84 3.16
4394 4977 2.414138 GTGGCGATGTGGTTACAAGTAC 59.586 50.000 0.00 0.00 40.84 2.73
4400 4983 1.000385 TGTGGTTACAAGTACGTCCCG 60.000 52.381 0.00 0.00 32.88 5.14
4402 4985 0.737367 GGTTACAAGTACGTCCCGGC 60.737 60.000 0.00 0.00 0.00 6.13
4409 4992 0.035739 AGTACGTCCCGGCATGTTTT 59.964 50.000 0.00 0.00 0.00 2.43
4415 4998 0.466372 TCCCGGCATGTTTTGTGACA 60.466 50.000 0.00 0.00 0.00 3.58
4510 5112 9.759259 GTAGAAATAAATTTGGCTGCAATTTTC 57.241 29.630 13.64 7.65 35.78 2.29
4529 5131 3.266510 TCCATGGCATCAAGACTGTAC 57.733 47.619 6.96 0.00 0.00 2.90
4551 5153 0.466555 AGTGGCTCCTACTCCTAGCG 60.467 60.000 0.00 0.00 37.11 4.26
4596 5198 9.542462 CCGTTGTATCATCTTTAGAATTTCCTA 57.458 33.333 0.00 0.00 0.00 2.94
4645 5247 6.560253 AAAGTTCAAGATAATGCTTGTCGT 57.440 33.333 0.00 0.00 44.30 4.34
4692 5294 3.983344 GTGGCTAATGAAAAACAGTGCTG 59.017 43.478 0.00 0.00 0.00 4.41
4702 5304 1.378531 AACAGTGCTGCGAGTTTTCA 58.621 45.000 0.00 0.00 0.00 2.69
4746 5349 6.429692 TCCAATGGCATCAAGTTTATATACCG 59.570 38.462 0.00 0.00 0.00 4.02
4750 5353 7.433708 TGGCATCAAGTTTATATACCGATTG 57.566 36.000 0.00 0.00 0.00 2.67
4802 5406 4.822350 GGGTATGAGCTTTTTAGTCATCCC 59.178 45.833 0.00 0.00 34.12 3.85
4804 5408 3.973206 TGAGCTTTTTAGTCATCCCGA 57.027 42.857 0.00 0.00 0.00 5.14
4805 5409 4.280436 TGAGCTTTTTAGTCATCCCGAA 57.720 40.909 0.00 0.00 0.00 4.30
4806 5410 4.843728 TGAGCTTTTTAGTCATCCCGAAT 58.156 39.130 0.00 0.00 0.00 3.34
4807 5411 5.984725 TGAGCTTTTTAGTCATCCCGAATA 58.015 37.500 0.00 0.00 0.00 1.75
4868 5474 3.986134 AGATCCCCTTCCTTTGCTGATAT 59.014 43.478 0.00 0.00 0.00 1.63
4869 5475 5.165652 AGATCCCCTTCCTTTGCTGATATA 58.834 41.667 0.00 0.00 0.00 0.86
4870 5476 5.612688 AGATCCCCTTCCTTTGCTGATATAA 59.387 40.000 0.00 0.00 0.00 0.98
4871 5477 5.725551 TCCCCTTCCTTTGCTGATATAAA 57.274 39.130 0.00 0.00 0.00 1.40
4872 5478 5.694995 TCCCCTTCCTTTGCTGATATAAAG 58.305 41.667 0.00 0.00 34.49 1.85
4873 5479 5.193728 TCCCCTTCCTTTGCTGATATAAAGT 59.806 40.000 0.00 0.00 33.21 2.66
4874 5480 5.300286 CCCCTTCCTTTGCTGATATAAAGTG 59.700 44.000 0.00 0.00 33.21 3.16
4875 5481 5.221126 CCCTTCCTTTGCTGATATAAAGTGC 60.221 44.000 0.00 0.00 33.21 4.40
4876 5482 5.357878 CCTTCCTTTGCTGATATAAAGTGCA 59.642 40.000 0.00 0.00 33.21 4.57
4877 5483 6.040166 CCTTCCTTTGCTGATATAAAGTGCAT 59.960 38.462 0.00 0.00 33.21 3.96
4878 5484 7.229306 CCTTCCTTTGCTGATATAAAGTGCATA 59.771 37.037 0.00 0.00 33.21 3.14
4879 5485 8.518430 TTCCTTTGCTGATATAAAGTGCATAA 57.482 30.769 0.00 0.00 33.21 1.90
4880 5486 7.930217 TCCTTTGCTGATATAAAGTGCATAAC 58.070 34.615 0.00 0.00 33.21 1.89
4881 5487 7.555914 TCCTTTGCTGATATAAAGTGCATAACA 59.444 33.333 0.00 0.00 33.21 2.41
4882 5488 8.190122 CCTTTGCTGATATAAAGTGCATAACAA 58.810 33.333 0.00 0.00 33.21 2.83
4883 5489 9.571810 CTTTGCTGATATAAAGTGCATAACAAA 57.428 29.630 0.00 0.00 33.50 2.83
4935 5557 4.236527 TCTCACTAGGTACAGATGAGCA 57.763 45.455 9.57 0.00 37.34 4.26
4982 5604 5.679638 GCACAAGTTGAAGAGACACCAAAAT 60.680 40.000 10.54 0.00 0.00 1.82
5071 5693 1.000274 GAAAGTCGCCAACCTGCAAAT 60.000 47.619 0.00 0.00 0.00 2.32
5098 5720 4.040952 ACTGCTCAATAACACTTCCACTCT 59.959 41.667 0.00 0.00 0.00 3.24
5099 5721 4.569943 TGCTCAATAACACTTCCACTCTC 58.430 43.478 0.00 0.00 0.00 3.20
5123 5745 5.574830 CGAATTTTTAACCGGATGCATGAAA 59.425 36.000 9.46 0.00 0.00 2.69
5159 5781 8.829373 ATAAGAAGCAATGAAAAATACTCCCT 57.171 30.769 0.00 0.00 0.00 4.20
5160 5782 6.765915 AGAAGCAATGAAAAATACTCCCTC 57.234 37.500 0.00 0.00 0.00 4.30
5161 5783 5.654209 AGAAGCAATGAAAAATACTCCCTCC 59.346 40.000 0.00 0.00 0.00 4.30
5162 5784 3.947834 AGCAATGAAAAATACTCCCTCCG 59.052 43.478 0.00 0.00 0.00 4.63
5163 5785 3.694566 GCAATGAAAAATACTCCCTCCGT 59.305 43.478 0.00 0.00 0.00 4.69
5164 5786 4.201920 GCAATGAAAAATACTCCCTCCGTC 60.202 45.833 0.00 0.00 0.00 4.79
5165 5787 3.622166 TGAAAAATACTCCCTCCGTCC 57.378 47.619 0.00 0.00 0.00 4.79
5166 5788 2.237893 TGAAAAATACTCCCTCCGTCCC 59.762 50.000 0.00 0.00 0.00 4.46
5167 5789 1.961133 AAAATACTCCCTCCGTCCCA 58.039 50.000 0.00 0.00 0.00 4.37
5168 5790 1.961133 AAATACTCCCTCCGTCCCAA 58.039 50.000 0.00 0.00 0.00 4.12
5169 5791 1.961133 AATACTCCCTCCGTCCCAAA 58.039 50.000 0.00 0.00 0.00 3.28
5170 5792 1.961133 ATACTCCCTCCGTCCCAAAA 58.039 50.000 0.00 0.00 0.00 2.44
5171 5793 1.961133 TACTCCCTCCGTCCCAAAAT 58.039 50.000 0.00 0.00 0.00 1.82
5172 5794 1.961133 ACTCCCTCCGTCCCAAAATA 58.039 50.000 0.00 0.00 0.00 1.40
5173 5795 2.271777 ACTCCCTCCGTCCCAAAATAA 58.728 47.619 0.00 0.00 0.00 1.40
5174 5796 2.238898 ACTCCCTCCGTCCCAAAATAAG 59.761 50.000 0.00 0.00 0.00 1.73
5175 5797 2.238898 CTCCCTCCGTCCCAAAATAAGT 59.761 50.000 0.00 0.00 0.00 2.24
5176 5798 2.026636 TCCCTCCGTCCCAAAATAAGTG 60.027 50.000 0.00 0.00 0.00 3.16
5177 5799 2.290705 CCCTCCGTCCCAAAATAAGTGT 60.291 50.000 0.00 0.00 0.00 3.55
5178 5800 3.007635 CCTCCGTCCCAAAATAAGTGTC 58.992 50.000 0.00 0.00 0.00 3.67
5179 5801 3.307480 CCTCCGTCCCAAAATAAGTGTCT 60.307 47.826 0.00 0.00 0.00 3.41
5180 5802 4.324267 CTCCGTCCCAAAATAAGTGTCTT 58.676 43.478 0.00 0.00 0.00 3.01
5181 5803 5.484715 CTCCGTCCCAAAATAAGTGTCTTA 58.515 41.667 0.00 0.00 0.00 2.10
5182 5804 5.867330 TCCGTCCCAAAATAAGTGTCTTAA 58.133 37.500 0.00 0.00 0.00 1.85
5183 5805 5.702209 TCCGTCCCAAAATAAGTGTCTTAAC 59.298 40.000 0.00 0.00 0.00 2.01
5184 5806 5.106436 CCGTCCCAAAATAAGTGTCTTAACC 60.106 44.000 0.00 0.00 0.00 2.85
5185 5807 5.704053 CGTCCCAAAATAAGTGTCTTAACCT 59.296 40.000 0.00 0.00 0.00 3.50
5186 5808 6.206048 CGTCCCAAAATAAGTGTCTTAACCTT 59.794 38.462 0.00 0.00 0.00 3.50
5187 5809 7.388500 CGTCCCAAAATAAGTGTCTTAACCTTA 59.612 37.037 0.00 0.00 0.00 2.69
5188 5810 8.727910 GTCCCAAAATAAGTGTCTTAACCTTAG 58.272 37.037 0.00 0.00 0.00 2.18
5189 5811 8.442374 TCCCAAAATAAGTGTCTTAACCTTAGT 58.558 33.333 0.00 0.00 0.00 2.24
5190 5812 9.729281 CCCAAAATAAGTGTCTTAACCTTAGTA 57.271 33.333 0.00 0.00 0.00 1.82
5198 5820 8.658499 AGTGTCTTAACCTTAGTACAACTTTG 57.342 34.615 0.00 0.00 0.00 2.77
5199 5821 7.226128 AGTGTCTTAACCTTAGTACAACTTTGC 59.774 37.037 0.00 0.00 0.00 3.68
5200 5822 7.011669 GTGTCTTAACCTTAGTACAACTTTGCA 59.988 37.037 0.00 0.00 0.00 4.08
5201 5823 7.011669 TGTCTTAACCTTAGTACAACTTTGCAC 59.988 37.037 0.00 0.00 0.00 4.57
5202 5824 7.226128 GTCTTAACCTTAGTACAACTTTGCACT 59.774 37.037 0.00 0.65 38.32 4.40
5203 5825 8.423349 TCTTAACCTTAGTACAACTTTGCACTA 58.577 33.333 0.00 0.00 36.29 2.74
5204 5826 8.597662 TTAACCTTAGTACAACTTTGCACTAG 57.402 34.615 0.00 0.00 38.06 2.57
5205 5827 6.415206 ACCTTAGTACAACTTTGCACTAGA 57.585 37.500 0.00 0.00 38.06 2.43
5206 5828 6.456501 ACCTTAGTACAACTTTGCACTAGAG 58.543 40.000 0.00 0.00 38.06 2.43
5207 5829 6.041751 ACCTTAGTACAACTTTGCACTAGAGT 59.958 38.462 0.00 2.80 38.06 3.24
5208 5830 6.586844 CCTTAGTACAACTTTGCACTAGAGTC 59.413 42.308 0.00 0.00 38.06 3.36
5209 5831 5.531122 AGTACAACTTTGCACTAGAGTCA 57.469 39.130 0.00 0.00 33.18 3.41
5210 5832 5.533482 AGTACAACTTTGCACTAGAGTCAG 58.467 41.667 0.00 0.00 33.18 3.51
5211 5833 4.408182 ACAACTTTGCACTAGAGTCAGT 57.592 40.909 0.00 0.00 0.00 3.41
5212 5834 5.531122 ACAACTTTGCACTAGAGTCAGTA 57.469 39.130 0.00 0.00 0.00 2.74
5213 5835 5.290386 ACAACTTTGCACTAGAGTCAGTAC 58.710 41.667 0.00 0.00 0.00 2.73
5214 5836 5.163447 ACAACTTTGCACTAGAGTCAGTACA 60.163 40.000 0.00 0.00 0.00 2.90
5215 5837 5.531122 ACTTTGCACTAGAGTCAGTACAA 57.469 39.130 0.00 0.00 31.43 2.41
5216 5838 5.914033 ACTTTGCACTAGAGTCAGTACAAA 58.086 37.500 14.81 14.81 38.74 2.83
5217 5839 6.459257 CTTTGCACTAGAGTCAGTACAAAG 57.541 41.667 21.20 21.20 46.00 2.77
5218 5840 5.531122 TTGCACTAGAGTCAGTACAAAGT 57.469 39.130 0.00 0.00 30.58 2.66
5219 5841 5.531122 TGCACTAGAGTCAGTACAAAGTT 57.469 39.130 0.00 0.00 0.00 2.66
5220 5842 5.289595 TGCACTAGAGTCAGTACAAAGTTG 58.710 41.667 0.00 0.00 0.00 3.16
5221 5843 5.068591 TGCACTAGAGTCAGTACAAAGTTGA 59.931 40.000 0.00 0.00 0.00 3.18
5222 5844 5.631512 GCACTAGAGTCAGTACAAAGTTGAG 59.368 44.000 0.00 0.00 0.00 3.02
5223 5845 6.515200 GCACTAGAGTCAGTACAAAGTTGAGA 60.515 42.308 0.00 0.00 0.00 3.27
5224 5846 6.858993 CACTAGAGTCAGTACAAAGTTGAGAC 59.141 42.308 0.00 1.34 0.00 3.36
5225 5847 5.854010 AGAGTCAGTACAAAGTTGAGACA 57.146 39.130 0.00 0.00 0.00 3.41
5226 5848 5.593010 AGAGTCAGTACAAAGTTGAGACAC 58.407 41.667 0.00 0.58 0.00 3.67
5227 5849 5.361285 AGAGTCAGTACAAAGTTGAGACACT 59.639 40.000 0.00 2.55 0.00 3.55
5228 5850 5.978814 AGTCAGTACAAAGTTGAGACACTT 58.021 37.500 0.00 0.00 38.74 3.16
5229 5851 7.068348 AGAGTCAGTACAAAGTTGAGACACTTA 59.932 37.037 0.00 0.00 35.87 2.24
5230 5852 7.727181 AGTCAGTACAAAGTTGAGACACTTAT 58.273 34.615 0.00 0.00 35.87 1.73
5231 5853 8.204836 AGTCAGTACAAAGTTGAGACACTTATT 58.795 33.333 0.00 0.00 35.87 1.40
5232 5854 8.827677 GTCAGTACAAAGTTGAGACACTTATTT 58.172 33.333 0.00 0.00 35.87 1.40
5233 5855 9.391006 TCAGTACAAAGTTGAGACACTTATTTT 57.609 29.630 0.00 0.00 35.87 1.82
5234 5856 9.438291 CAGTACAAAGTTGAGACACTTATTTTG 57.562 33.333 0.00 0.00 35.87 2.44
5235 5857 8.621286 AGTACAAAGTTGAGACACTTATTTTGG 58.379 33.333 0.00 0.00 35.87 3.28
5236 5858 6.805713 ACAAAGTTGAGACACTTATTTTGGG 58.194 36.000 0.00 0.00 35.87 4.12
5237 5859 6.605594 ACAAAGTTGAGACACTTATTTTGGGA 59.394 34.615 0.00 0.00 35.87 4.37
5238 5860 7.287696 ACAAAGTTGAGACACTTATTTTGGGAT 59.712 33.333 0.00 0.00 35.87 3.85
5239 5861 6.824305 AGTTGAGACACTTATTTTGGGATG 57.176 37.500 0.00 0.00 0.00 3.51
5240 5862 5.711976 AGTTGAGACACTTATTTTGGGATGG 59.288 40.000 0.00 0.00 0.00 3.51
5241 5863 5.512942 TGAGACACTTATTTTGGGATGGA 57.487 39.130 0.00 0.00 0.00 3.41
5242 5864 5.500234 TGAGACACTTATTTTGGGATGGAG 58.500 41.667 0.00 0.00 0.00 3.86
5243 5865 4.860022 AGACACTTATTTTGGGATGGAGG 58.140 43.478 0.00 0.00 0.00 4.30
5244 5866 3.954258 GACACTTATTTTGGGATGGAGGG 59.046 47.826 0.00 0.00 0.00 4.30
5245 5867 3.596046 ACACTTATTTTGGGATGGAGGGA 59.404 43.478 0.00 0.00 0.00 4.20
5246 5868 4.210331 CACTTATTTTGGGATGGAGGGAG 58.790 47.826 0.00 0.00 0.00 4.30
5247 5869 3.858638 ACTTATTTTGGGATGGAGGGAGT 59.141 43.478 0.00 0.00 0.00 3.85
5248 5870 5.043762 ACTTATTTTGGGATGGAGGGAGTA 58.956 41.667 0.00 0.00 0.00 2.59
5251 5873 5.584551 ATTTTGGGATGGAGGGAGTATAC 57.415 43.478 0.00 0.00 0.00 1.47
5253 5875 3.260269 TGGGATGGAGGGAGTATACTG 57.740 52.381 10.90 0.00 0.00 2.74
5266 5888 6.277522 AGGGAGTATACTGCTAGGTAAGGTAT 59.722 42.308 21.90 0.00 34.50 2.73
5306 5928 0.178068 TCTCTGGCCTAACAATCGCC 59.822 55.000 3.32 0.00 43.32 5.54
5339 5961 2.437343 GCACTCGAAGAAGCGGACG 61.437 63.158 0.00 0.00 34.09 4.79
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
19 20 3.823873 AGAATCACCATGCGTACCAAAAA 59.176 39.130 0.00 0.00 0.00 1.94
20 21 3.417101 AGAATCACCATGCGTACCAAAA 58.583 40.909 0.00 0.00 0.00 2.44
21 22 3.066291 AGAATCACCATGCGTACCAAA 57.934 42.857 0.00 0.00 0.00 3.28
22 23 2.779755 AGAATCACCATGCGTACCAA 57.220 45.000 0.00 0.00 0.00 3.67
23 24 2.746904 CAAAGAATCACCATGCGTACCA 59.253 45.455 0.00 0.00 0.00 3.25
24 25 2.097466 CCAAAGAATCACCATGCGTACC 59.903 50.000 0.00 0.00 0.00 3.34
25 26 2.477863 GCCAAAGAATCACCATGCGTAC 60.478 50.000 0.00 0.00 0.00 3.67
26 27 1.742831 GCCAAAGAATCACCATGCGTA 59.257 47.619 0.00 0.00 0.00 4.42
27 28 0.527565 GCCAAAGAATCACCATGCGT 59.472 50.000 0.00 0.00 0.00 5.24
28 29 0.527113 TGCCAAAGAATCACCATGCG 59.473 50.000 0.00 0.00 0.00 4.73
29 30 2.429610 AGATGCCAAAGAATCACCATGC 59.570 45.455 0.00 0.00 0.00 4.06
30 31 3.181479 CCAGATGCCAAAGAATCACCATG 60.181 47.826 0.00 0.00 0.00 3.66
31 32 3.028850 CCAGATGCCAAAGAATCACCAT 58.971 45.455 0.00 0.00 0.00 3.55
32 33 2.449464 CCAGATGCCAAAGAATCACCA 58.551 47.619 0.00 0.00 0.00 4.17
33 34 1.135721 GCCAGATGCCAAAGAATCACC 59.864 52.381 0.00 0.00 0.00 4.02
34 35 2.573941 GCCAGATGCCAAAGAATCAC 57.426 50.000 0.00 0.00 0.00 3.06
46 47 3.499737 GTCGCAACGGGCCAGATG 61.500 66.667 10.86 9.71 40.31 2.90
56 57 0.651031 GAAAGGCTATCCGTCGCAAC 59.349 55.000 0.00 0.00 37.47 4.17
57 58 0.535335 AGAAAGGCTATCCGTCGCAA 59.465 50.000 0.00 0.00 37.47 4.85
58 59 1.337071 CTAGAAAGGCTATCCGTCGCA 59.663 52.381 0.00 0.00 37.47 5.10
59 60 1.931263 GCTAGAAAGGCTATCCGTCGC 60.931 57.143 0.00 0.00 37.47 5.19
60 61 1.609555 AGCTAGAAAGGCTATCCGTCG 59.390 52.381 0.00 0.00 38.36 5.12
61 62 3.737032 AAGCTAGAAAGGCTATCCGTC 57.263 47.619 0.00 0.00 39.30 4.79
62 63 4.650131 AGTAAAGCTAGAAAGGCTATCCGT 59.350 41.667 0.00 0.00 39.30 4.69
63 64 4.985409 CAGTAAAGCTAGAAAGGCTATCCG 59.015 45.833 0.00 0.00 39.30 4.18
64 65 5.755861 CACAGTAAAGCTAGAAAGGCTATCC 59.244 44.000 0.00 0.00 39.30 2.59
65 66 6.574350 TCACAGTAAAGCTAGAAAGGCTATC 58.426 40.000 0.00 0.00 39.30 2.08
66 67 6.546428 TCACAGTAAAGCTAGAAAGGCTAT 57.454 37.500 0.00 0.00 39.30 2.97
67 68 5.995565 TCACAGTAAAGCTAGAAAGGCTA 57.004 39.130 0.00 0.00 39.30 3.93
68 69 4.891992 TCACAGTAAAGCTAGAAAGGCT 57.108 40.909 0.00 0.00 42.31 4.58
69 70 5.941948 TTTCACAGTAAAGCTAGAAAGGC 57.058 39.130 0.00 0.00 31.31 4.35
70 71 7.672983 TGATTTCACAGTAAAGCTAGAAAGG 57.327 36.000 0.00 0.00 35.40 3.11
85 86 9.177608 CCTTGGATAGATTTAACTGATTTCACA 57.822 33.333 0.00 0.00 0.00 3.58
86 87 9.396022 TCCTTGGATAGATTTAACTGATTTCAC 57.604 33.333 0.00 0.00 0.00 3.18
87 88 9.618890 CTCCTTGGATAGATTTAACTGATTTCA 57.381 33.333 0.00 0.00 0.00 2.69
88 89 9.061435 CCTCCTTGGATAGATTTAACTGATTTC 57.939 37.037 0.00 0.00 38.35 2.17
89 90 8.001292 CCCTCCTTGGATAGATTTAACTGATTT 58.999 37.037 0.00 0.00 38.35 2.17
90 91 7.421853 CCCCTCCTTGGATAGATTTAACTGATT 60.422 40.741 0.00 0.00 38.35 2.57
91 92 6.044871 CCCCTCCTTGGATAGATTTAACTGAT 59.955 42.308 0.00 0.00 38.35 2.90
92 93 5.369699 CCCCTCCTTGGATAGATTTAACTGA 59.630 44.000 0.00 0.00 38.35 3.41
93 94 5.369699 TCCCCTCCTTGGATAGATTTAACTG 59.630 44.000 0.00 0.00 38.35 3.16
94 95 5.548573 TCCCCTCCTTGGATAGATTTAACT 58.451 41.667 0.00 0.00 38.35 2.24
95 96 5.906772 TCCCCTCCTTGGATAGATTTAAC 57.093 43.478 0.00 0.00 38.35 2.01
96 97 5.163088 GCTTCCCCTCCTTGGATAGATTTAA 60.163 44.000 0.00 0.00 38.35 1.52
97 98 4.351111 GCTTCCCCTCCTTGGATAGATTTA 59.649 45.833 0.00 0.00 38.35 1.40
98 99 3.139211 GCTTCCCCTCCTTGGATAGATTT 59.861 47.826 0.00 0.00 38.35 2.17
99 100 2.713708 GCTTCCCCTCCTTGGATAGATT 59.286 50.000 0.00 0.00 38.35 2.40
100 101 2.343625 GCTTCCCCTCCTTGGATAGAT 58.656 52.381 0.00 0.00 38.35 1.98
101 102 1.695989 GGCTTCCCCTCCTTGGATAGA 60.696 57.143 0.00 0.00 38.35 1.98
102 103 0.767998 GGCTTCCCCTCCTTGGATAG 59.232 60.000 0.00 0.00 38.35 2.08
103 104 0.346932 AGGCTTCCCCTCCTTGGATA 59.653 55.000 0.00 0.00 41.21 2.59
104 105 1.085605 AGGCTTCCCCTCCTTGGAT 59.914 57.895 0.00 0.00 41.21 3.41
105 106 1.925455 CAGGCTTCCCCTCCTTGGA 60.925 63.158 0.00 0.00 44.09 3.53
106 107 2.679716 CAGGCTTCCCCTCCTTGG 59.320 66.667 0.00 0.00 44.09 3.61
107 108 2.044551 GCAGGCTTCCCCTCCTTG 60.045 66.667 0.00 0.00 44.09 3.61
108 109 3.721706 CGCAGGCTTCCCCTCCTT 61.722 66.667 0.00 0.00 44.09 3.36
119 120 1.070445 ATATCTGTCCAGCGCAGGC 59.930 57.895 15.03 10.02 40.37 4.85
120 121 1.226686 GCATATCTGTCCAGCGCAGG 61.227 60.000 13.53 13.53 34.89 4.85
121 122 0.531311 TGCATATCTGTCCAGCGCAG 60.531 55.000 11.47 0.00 35.43 5.18
122 123 0.107268 ATGCATATCTGTCCAGCGCA 59.893 50.000 11.47 0.00 0.00 6.09
123 124 0.795085 GATGCATATCTGTCCAGCGC 59.205 55.000 0.00 0.00 0.00 5.92
124 125 1.270465 TGGATGCATATCTGTCCAGCG 60.270 52.381 0.00 0.00 35.91 5.18
125 126 2.556144 TGGATGCATATCTGTCCAGC 57.444 50.000 0.00 0.00 35.91 4.85
127 128 3.200605 ACAACTGGATGCATATCTGTCCA 59.799 43.478 0.00 0.96 38.37 4.02
128 129 3.562973 CACAACTGGATGCATATCTGTCC 59.437 47.826 0.00 0.00 33.68 4.02
129 130 4.034858 CACACAACTGGATGCATATCTGTC 59.965 45.833 0.00 0.00 33.68 3.51
130 131 3.943381 CACACAACTGGATGCATATCTGT 59.057 43.478 0.00 2.68 33.68 3.41
131 132 3.242969 GCACACAACTGGATGCATATCTG 60.243 47.826 0.00 2.01 38.00 2.90
132 133 2.947652 GCACACAACTGGATGCATATCT 59.052 45.455 0.00 0.00 38.00 1.98
133 134 2.947652 AGCACACAACTGGATGCATATC 59.052 45.455 0.00 0.00 40.63 1.63
134 135 3.008835 AGCACACAACTGGATGCATAT 57.991 42.857 0.00 0.00 40.63 1.78
135 136 2.495155 AGCACACAACTGGATGCATA 57.505 45.000 0.00 0.00 40.63 3.14
136 137 1.624336 AAGCACACAACTGGATGCAT 58.376 45.000 0.00 0.00 40.63 3.96
137 138 1.337703 GAAAGCACACAACTGGATGCA 59.662 47.619 9.33 0.00 40.63 3.96
138 139 1.610522 AGAAAGCACACAACTGGATGC 59.389 47.619 0.00 0.00 38.39 3.91
139 140 3.316029 TCAAGAAAGCACACAACTGGATG 59.684 43.478 0.00 0.00 0.00 3.51
140 141 3.554934 TCAAGAAAGCACACAACTGGAT 58.445 40.909 0.00 0.00 0.00 3.41
141 142 2.945008 CTCAAGAAAGCACACAACTGGA 59.055 45.455 0.00 0.00 0.00 3.86
142 143 2.684881 ACTCAAGAAAGCACACAACTGG 59.315 45.455 0.00 0.00 0.00 4.00
143 144 3.242870 GGACTCAAGAAAGCACACAACTG 60.243 47.826 0.00 0.00 0.00 3.16
144 145 2.945668 GGACTCAAGAAAGCACACAACT 59.054 45.455 0.00 0.00 0.00 3.16
145 146 2.033424 GGGACTCAAGAAAGCACACAAC 59.967 50.000 0.00 0.00 0.00 3.32
146 147 2.092429 AGGGACTCAAGAAAGCACACAA 60.092 45.455 0.00 0.00 0.00 3.33
147 148 1.490490 AGGGACTCAAGAAAGCACACA 59.510 47.619 0.00 0.00 0.00 3.72
148 149 2.262423 AGGGACTCAAGAAAGCACAC 57.738 50.000 0.00 0.00 0.00 3.82
149 150 2.439507 AGAAGGGACTCAAGAAAGCACA 59.560 45.455 0.00 0.00 38.49 4.57
150 151 2.810852 CAGAAGGGACTCAAGAAAGCAC 59.189 50.000 0.00 0.00 38.49 4.40
151 152 2.439507 ACAGAAGGGACTCAAGAAAGCA 59.560 45.455 0.00 0.00 38.49 3.91
152 153 3.133141 ACAGAAGGGACTCAAGAAAGC 57.867 47.619 0.00 0.00 38.49 3.51
153 154 4.998033 GGTTACAGAAGGGACTCAAGAAAG 59.002 45.833 0.00 0.00 38.49 2.62
154 155 4.410883 TGGTTACAGAAGGGACTCAAGAAA 59.589 41.667 0.00 0.00 38.49 2.52
155 156 3.971305 TGGTTACAGAAGGGACTCAAGAA 59.029 43.478 0.00 0.00 38.49 2.52
156 157 3.583228 TGGTTACAGAAGGGACTCAAGA 58.417 45.455 0.00 0.00 38.49 3.02
157 158 4.020218 TGATGGTTACAGAAGGGACTCAAG 60.020 45.833 0.00 0.00 38.49 3.02
158 159 3.907474 TGATGGTTACAGAAGGGACTCAA 59.093 43.478 0.00 0.00 38.49 3.02
159 160 3.516586 TGATGGTTACAGAAGGGACTCA 58.483 45.455 0.00 0.00 38.49 3.41
160 161 4.162320 TCATGATGGTTACAGAAGGGACTC 59.838 45.833 0.00 0.00 38.49 3.36
162 163 4.487714 TCATGATGGTTACAGAAGGGAC 57.512 45.455 0.00 0.00 0.00 4.46
163 164 5.397899 GGAATCATGATGGTTACAGAAGGGA 60.398 44.000 9.46 0.00 0.00 4.20
164 165 4.823989 GGAATCATGATGGTTACAGAAGGG 59.176 45.833 9.46 0.00 0.00 3.95
165 166 5.530171 CAGGAATCATGATGGTTACAGAAGG 59.470 44.000 9.46 0.00 0.00 3.46
166 167 6.351711 TCAGGAATCATGATGGTTACAGAAG 58.648 40.000 9.46 0.00 0.00 2.85
167 168 6.156775 TCTCAGGAATCATGATGGTTACAGAA 59.843 38.462 9.46 0.00 0.00 3.02
168 169 5.662657 TCTCAGGAATCATGATGGTTACAGA 59.337 40.000 9.46 0.00 0.00 3.41
169 170 5.922053 TCTCAGGAATCATGATGGTTACAG 58.078 41.667 9.46 0.00 0.00 2.74
170 171 5.955961 TCTCAGGAATCATGATGGTTACA 57.044 39.130 9.46 0.00 0.00 2.41
171 172 6.876257 GGTATCTCAGGAATCATGATGGTTAC 59.124 42.308 9.46 0.00 0.00 2.50
172 173 6.789457 AGGTATCTCAGGAATCATGATGGTTA 59.211 38.462 9.46 0.00 0.00 2.85
183 184 9.736414 CAATGAAATCATAGGTATCTCAGGAAT 57.264 33.333 0.00 0.00 35.10 3.01
194 195 6.664816 TCAGAAAAGCCAATGAAATCATAGGT 59.335 34.615 0.00 0.00 35.10 3.08
210 211 5.531287 TGAAAACCCTCTTAGTCAGAAAAGC 59.469 40.000 0.00 0.00 0.00 3.51
225 226 1.132881 TGGGCCAAGATTGAAAACCCT 60.133 47.619 2.13 0.00 36.78 4.34
240 241 5.985530 GCTCTACAAAAATTTGATATGGGCC 59.014 40.000 12.54 0.00 40.55 5.80
242 243 7.999679 TCAGCTCTACAAAAATTTGATATGGG 58.000 34.615 12.54 1.59 40.55 4.00
252 253 3.428045 GGCGCAATCAGCTCTACAAAAAT 60.428 43.478 10.83 0.00 42.61 1.82
295 297 5.874810 TGGATGTAGAGAAAATCAAGGTTCG 59.125 40.000 0.00 0.00 0.00 3.95
421 423 4.261614 GGGTTGGAGAAAATGACTTGTGAC 60.262 45.833 0.00 0.00 0.00 3.67
428 430 3.486383 TGTCAGGGTTGGAGAAAATGAC 58.514 45.455 0.00 0.00 36.87 3.06
440 442 8.095452 AGTGATAAATATCTCTTGTCAGGGTT 57.905 34.615 2.40 0.00 34.02 4.11
486 488 3.067684 AGGGCACGTGCTAAGTAAAAT 57.932 42.857 36.84 11.83 41.70 1.82
501 503 6.042781 TCTCTCTTGTAACTTCTAAAAGGGCA 59.957 38.462 0.00 0.00 36.78 5.36
568 575 7.883217 AGGCTGATCATGATTTCATATTGAAC 58.117 34.615 10.14 0.00 35.89 3.18
664 672 1.006337 GTTGCAGAATTGGGCGCAA 60.006 52.632 19.29 19.29 41.79 4.85
673 681 3.197549 ACCACAAAAGGTTGTTGCAGAAT 59.802 39.130 0.00 0.00 46.01 2.40
686 694 1.338020 GCTCCAGTTCCACCACAAAAG 59.662 52.381 0.00 0.00 0.00 2.27
687 695 1.398692 GCTCCAGTTCCACCACAAAA 58.601 50.000 0.00 0.00 0.00 2.44
688 696 0.467290 GGCTCCAGTTCCACCACAAA 60.467 55.000 0.00 0.00 0.00 2.83
691 699 1.823169 TACGGCTCCAGTTCCACCAC 61.823 60.000 0.00 0.00 0.00 4.16
692 700 0.907704 ATACGGCTCCAGTTCCACCA 60.908 55.000 0.00 0.00 0.00 4.17
694 702 0.535335 TGATACGGCTCCAGTTCCAC 59.465 55.000 0.00 0.00 0.00 4.02
695 703 0.824109 CTGATACGGCTCCAGTTCCA 59.176 55.000 0.00 0.00 0.00 3.53
793 803 9.539825 TTACATCGCAATGGCAATAATTATTTT 57.460 25.926 8.01 0.00 41.24 1.82
814 824 4.081142 TGAAGTGTCCCGATGATGTTACAT 60.081 41.667 0.00 0.00 0.00 2.29
855 865 3.135225 CGACATGTGGTTAAAGACACCA 58.865 45.455 1.15 0.00 42.34 4.17
859 869 1.463528 GCGCGACATGTGGTTAAAGAC 60.464 52.381 12.10 0.00 0.00 3.01
938 949 7.123247 AGGTGATCCTATGGATTTCAAGTTTTG 59.877 37.037 0.26 0.00 43.27 2.44
945 956 4.982241 GGAGGTGATCCTATGGATTTCA 57.018 45.455 0.26 0.00 43.27 2.69
959 970 4.222145 AGTCGTTAAATAAGCTGGAGGTGA 59.778 41.667 0.00 0.00 0.00 4.02
985 996 4.293662 TGCCCATCTGTTTGTGTATGTA 57.706 40.909 0.00 0.00 0.00 2.29
1510 1923 0.621862 GAGTTCTCCCCCAGGTCCAT 60.622 60.000 0.00 0.00 0.00 3.41
1564 1977 6.041296 AGGTTGAGAAATGTGAGCTTTGAAAT 59.959 34.615 0.00 0.00 0.00 2.17
1632 2045 1.616865 CTTGTGAGGGACGTGAGGTTA 59.383 52.381 0.00 0.00 0.00 2.85
1689 2102 3.900862 TTGCCCAGCCAGCTTGGA 61.901 61.111 13.67 0.00 40.96 3.53
1765 2178 7.301420 AGATTAGACATCTTACCCAGATCTGA 58.699 38.462 24.62 2.91 40.67 3.27
1821 2234 0.034089 ATGGAGGAAAAGGGCCTTCG 60.034 55.000 21.20 0.00 35.44 3.79
1914 2329 3.853475 CTTGGGAAGCTTAAAGCCAATG 58.147 45.455 0.00 0.00 43.77 2.82
1957 2376 3.320610 TGGTCCTTGGAATTGGTTCAA 57.679 42.857 0.00 0.00 36.01 2.69
2017 2436 1.200020 CCGATTTCCACCAAGAAGCAC 59.800 52.381 0.00 0.00 0.00 4.40
2036 2455 2.767505 GTGGAATCGGACCATGATACC 58.232 52.381 0.00 0.00 39.69 2.73
2069 2488 3.685139 ATACTATCAGACGGCCATTGG 57.315 47.619 2.24 0.00 0.00 3.16
2071 2490 5.299279 CCAAAAATACTATCAGACGGCCATT 59.701 40.000 2.24 0.00 0.00 3.16
2076 2495 5.989777 CCCTACCAAAAATACTATCAGACGG 59.010 44.000 0.00 0.00 0.00 4.79
2080 2499 8.674607 GTTGTTCCCTACCAAAAATACTATCAG 58.325 37.037 0.00 0.00 0.00 2.90
2106 2525 1.000938 GGCTCTGTGGTTTGAAGCAAG 60.001 52.381 0.00 0.00 38.25 4.01
2145 2564 7.799081 AGTTACTACAGTTGGTTAAGGAAGTT 58.201 34.615 0.00 0.00 0.00 2.66
2148 2567 6.993902 CCAAGTTACTACAGTTGGTTAAGGAA 59.006 38.462 0.00 0.00 35.65 3.36
2190 2609 3.449377 TGACCCCTTCAAGGTTGTTTTTC 59.551 43.478 1.78 0.00 37.88 2.29
2191 2610 3.445987 TGACCCCTTCAAGGTTGTTTTT 58.554 40.909 1.78 0.00 37.88 1.94
2211 2630 3.181487 GGTTGGCAATAGTAACTGGCATG 60.181 47.826 1.92 0.00 46.16 4.06
2342 2762 0.607489 CAAGGTGCCTGTGAAGAGGG 60.607 60.000 0.00 0.00 33.17 4.30
2370 2790 2.363359 GAGGCTAGGAATTTGGCCAATG 59.637 50.000 21.26 5.12 46.23 2.82
2410 2830 3.250617 TCTGCCCATGGAATCTGCTATA 58.749 45.455 15.22 0.00 0.00 1.31
2442 2862 6.030228 GCTCAACTTTGTGATATTGCCTAAC 58.970 40.000 0.00 0.00 0.00 2.34
2517 2937 2.167693 TGTAAGCCCTGTGAGATTACCG 59.832 50.000 0.00 0.00 0.00 4.02
2531 2951 5.055812 CAGAAAGATCCAGAGATGTAAGCC 58.944 45.833 0.00 0.00 30.90 4.35
2577 2997 0.040058 TGCTAAGTACCTCCGGTGGA 59.960 55.000 28.83 9.86 36.19 4.02
2614 3034 8.040132 CAGAGAATTGTTAGAGAGGTTGAGAAT 58.960 37.037 0.00 0.00 0.00 2.40
2628 3048 3.582647 TGGAGCCACTCAGAGAATTGTTA 59.417 43.478 3.79 0.00 31.08 2.41
2736 3156 2.191908 AGTTGGACGCAACTGCCA 59.808 55.556 7.52 0.00 43.08 4.92
2831 3251 7.454260 AACATGTTTCTAGAAAGATCCAACC 57.546 36.000 21.56 7.81 32.78 3.77
2852 3272 0.623324 AGGTATGGCCCCTGCTAACA 60.623 55.000 0.00 0.00 38.26 2.41
2853 3273 0.179018 CAGGTATGGCCCCTGCTAAC 60.179 60.000 12.93 0.00 42.81 2.34
2907 3327 7.386851 CAGATAGGTTGTTGAAAGAGAGGTTA 58.613 38.462 0.00 0.00 0.00 2.85
2940 3360 1.550072 CGGAAAATCCCTGCATTTGGT 59.450 47.619 0.00 0.00 31.13 3.67
3065 3502 0.173708 GACCCGAAGACGATGCTTCT 59.826 55.000 12.79 0.00 41.60 2.85
3066 3503 0.108804 TGACCCGAAGACGATGCTTC 60.109 55.000 0.00 0.00 42.66 3.86
3152 3598 5.642063 TCGACACTATTTGGTTTGATTCTCC 59.358 40.000 0.00 0.00 0.00 3.71
3228 3680 2.286294 GGACTGCGTTGCTTCATCTATG 59.714 50.000 0.00 0.00 0.00 2.23
3360 3812 3.846360 GCTTCTGTTAGCTCCTCGTTTA 58.154 45.455 0.00 0.00 38.15 2.01
3495 3947 6.855763 AAGTTCCCATTGCAGATAAATTCA 57.144 33.333 0.00 0.00 0.00 2.57
3717 4175 6.832520 TGCATTATCTTTGCTAGACCAAAA 57.167 33.333 0.00 0.00 40.77 2.44
3750 4208 2.049802 CCGCCACTTTGCTTGCAG 60.050 61.111 0.00 0.00 0.00 4.41
3801 4259 4.081531 CCTGGTGCAATGTATCCAATTGTT 60.082 41.667 4.43 0.00 0.00 2.83
3814 4272 0.963962 CTTTGCTGACCTGGTGCAAT 59.036 50.000 20.95 0.00 44.55 3.56
3875 4359 5.432157 GCGAGTGAATGTTAATTACCGATG 58.568 41.667 0.00 0.00 0.00 3.84
3880 4407 7.753132 TCAAATTGGCGAGTGAATGTTAATTAC 59.247 33.333 0.00 0.00 0.00 1.89
3889 4416 5.957842 TTAGTTCAAATTGGCGAGTGAAT 57.042 34.783 6.85 1.36 32.93 2.57
3896 4423 2.977169 CACCGTTTAGTTCAAATTGGCG 59.023 45.455 0.00 0.00 31.14 5.69
3914 4446 6.852664 AGACATAAATTTGACGGATTTCACC 58.147 36.000 0.00 0.00 0.00 4.02
3974 4511 5.013079 TCCTGAGCCATACTCTGAAAAAGAA 59.987 40.000 1.63 0.00 46.41 2.52
3976 4513 4.836825 TCCTGAGCCATACTCTGAAAAAG 58.163 43.478 1.63 0.00 46.41 2.27
4164 4701 0.035739 GGGTTTCCGCTGTAGGTTGA 59.964 55.000 0.00 0.00 0.00 3.18
4244 4781 0.322456 TTCTGTGCCTTGGGGAATCG 60.322 55.000 0.00 0.00 33.58 3.34
4328 4870 2.476185 GGTTGCTCGAAATCCATGAACG 60.476 50.000 0.00 0.00 0.00 3.95
4400 4983 3.742369 CAGGAATTGTCACAAAACATGCC 59.258 43.478 0.00 0.00 0.00 4.40
4402 4985 6.907206 AAACAGGAATTGTCACAAAACATG 57.093 33.333 0.00 2.42 39.73 3.21
4409 4992 5.913137 AACAGAAAACAGGAATTGTCACA 57.087 34.783 0.00 0.00 39.73 3.58
4443 5026 7.661536 ACTACTTATGCTTCTAGGACAATGA 57.338 36.000 0.00 0.00 0.00 2.57
4444 5027 8.723942 AAACTACTTATGCTTCTAGGACAATG 57.276 34.615 0.00 0.00 0.00 2.82
4450 5033 9.937175 GCAAAATAAACTACTTATGCTTCTAGG 57.063 33.333 0.00 0.00 30.24 3.02
4471 5072 9.921637 AAATTTATTTCTACGAGGATTGCAAAA 57.078 25.926 1.71 0.00 0.00 2.44
4494 5096 3.349022 CCATGGAAAATTGCAGCCAAAT 58.651 40.909 5.56 0.00 34.05 2.32
4510 5112 2.292267 GGTACAGTCTTGATGCCATGG 58.708 52.381 7.63 7.63 0.00 3.66
4529 5131 0.183014 TAGGAGTAGGAGCCACTCGG 59.817 60.000 10.73 0.00 42.79 4.63
4551 5153 2.162408 CGGCAAGGAGAACTGAAAATCC 59.838 50.000 0.00 0.00 0.00 3.01
4596 5198 5.355350 GCTATCTGAACCAGTGTAGCAATTT 59.645 40.000 19.04 0.00 41.44 1.82
4607 5209 7.099764 TCTTGAACTTTAGCTATCTGAACCAG 58.900 38.462 0.00 0.00 0.00 4.00
4645 5247 6.480763 TGGAATCAAAGCAGTAACCTGATTA 58.519 36.000 0.00 0.00 46.14 1.75
4692 5294 2.737252 CCAGAAGTACCTGAAAACTCGC 59.263 50.000 1.10 0.00 36.29 5.03
4750 5353 4.179579 GACCAAGATTGCGGGCGC 62.180 66.667 0.00 0.00 42.35 6.53
4802 5406 7.201617 GGAGATTAGTTTGGGTTCAAGTATTCG 60.202 40.741 0.00 0.00 33.98 3.34
4804 5408 7.466804 TGGAGATTAGTTTGGGTTCAAGTATT 58.533 34.615 0.00 0.00 33.98 1.89
4805 5409 7.027874 TGGAGATTAGTTTGGGTTCAAGTAT 57.972 36.000 0.00 0.00 33.98 2.12
4806 5410 6.442541 TGGAGATTAGTTTGGGTTCAAGTA 57.557 37.500 0.00 0.00 33.98 2.24
4807 5411 5.319043 TGGAGATTAGTTTGGGTTCAAGT 57.681 39.130 0.00 0.00 33.98 3.16
4868 5474 7.608376 TGGCTAGTGTATTTGTTATGCACTTTA 59.392 33.333 12.49 0.00 41.10 1.85
4869 5475 6.432783 TGGCTAGTGTATTTGTTATGCACTTT 59.567 34.615 12.49 0.00 41.10 2.66
4870 5476 5.943416 TGGCTAGTGTATTTGTTATGCACTT 59.057 36.000 12.49 0.48 41.10 3.16
4871 5477 5.496556 TGGCTAGTGTATTTGTTATGCACT 58.503 37.500 12.03 12.03 44.82 4.40
4872 5478 5.354234 ACTGGCTAGTGTATTTGTTATGCAC 59.646 40.000 0.13 0.00 35.34 4.57
4873 5479 5.496556 ACTGGCTAGTGTATTTGTTATGCA 58.503 37.500 0.13 0.00 35.34 3.96
4874 5480 6.537301 TGTACTGGCTAGTGTATTTGTTATGC 59.463 38.462 13.76 0.00 37.78 3.14
4875 5481 8.551205 CATGTACTGGCTAGTGTATTTGTTATG 58.449 37.037 13.76 1.10 37.78 1.90
4876 5482 7.226720 GCATGTACTGGCTAGTGTATTTGTTAT 59.773 37.037 13.76 0.00 37.78 1.89
4877 5483 6.537301 GCATGTACTGGCTAGTGTATTTGTTA 59.463 38.462 13.76 0.00 37.78 2.41
4878 5484 5.354234 GCATGTACTGGCTAGTGTATTTGTT 59.646 40.000 13.76 0.00 37.78 2.83
4879 5485 4.876107 GCATGTACTGGCTAGTGTATTTGT 59.124 41.667 13.76 0.00 37.78 2.83
4880 5486 4.875536 TGCATGTACTGGCTAGTGTATTTG 59.124 41.667 13.76 4.78 37.78 2.32
4881 5487 5.097742 TGCATGTACTGGCTAGTGTATTT 57.902 39.130 13.76 0.00 37.78 1.40
4882 5488 4.753516 TGCATGTACTGGCTAGTGTATT 57.246 40.909 13.76 0.00 37.78 1.89
4883 5489 4.101585 ACATGCATGTACTGGCTAGTGTAT 59.898 41.667 30.50 4.15 39.68 2.29
4884 5490 3.450817 ACATGCATGTACTGGCTAGTGTA 59.549 43.478 30.50 1.67 39.68 2.90
4885 5491 2.237143 ACATGCATGTACTGGCTAGTGT 59.763 45.455 30.50 2.37 39.68 3.55
4935 5557 6.211184 TGCCAAATTCATTTGTTATGGAGTCT 59.789 34.615 10.63 0.00 44.21 3.24
4982 5604 6.539173 AGTTTATGTACTTTGGTGTGGATCA 58.461 36.000 0.00 0.00 0.00 2.92
5071 5693 5.008613 GTGGAAGTGTTATTGAGCAGTTTCA 59.991 40.000 0.00 0.00 32.76 2.69
5098 5720 4.396478 TCATGCATCCGGTTAAAAATTCGA 59.604 37.500 0.00 0.00 0.00 3.71
5099 5721 4.667262 TCATGCATCCGGTTAAAAATTCG 58.333 39.130 0.00 0.00 0.00 3.34
5123 5745 7.870509 TCATTGCTTCTTATAACATTCAGCT 57.129 32.000 0.00 0.00 0.00 4.24
5154 5776 2.238898 ACTTATTTTGGGACGGAGGGAG 59.761 50.000 0.00 0.00 0.00 4.30
5155 5777 2.026636 CACTTATTTTGGGACGGAGGGA 60.027 50.000 0.00 0.00 0.00 4.20
5157 5779 3.007635 GACACTTATTTTGGGACGGAGG 58.992 50.000 0.00 0.00 0.00 4.30
5158 5780 3.939066 AGACACTTATTTTGGGACGGAG 58.061 45.455 0.00 0.00 0.00 4.63
5159 5781 4.360951 AAGACACTTATTTTGGGACGGA 57.639 40.909 0.00 0.00 0.00 4.69
5160 5782 5.106436 GGTTAAGACACTTATTTTGGGACGG 60.106 44.000 0.00 0.00 0.00 4.79
5161 5783 5.704053 AGGTTAAGACACTTATTTTGGGACG 59.296 40.000 0.00 0.00 0.00 4.79
5162 5784 7.520451 AAGGTTAAGACACTTATTTTGGGAC 57.480 36.000 0.00 0.00 0.00 4.46
5163 5785 8.442374 ACTAAGGTTAAGACACTTATTTTGGGA 58.558 33.333 0.00 0.00 0.00 4.37
5164 5786 8.631480 ACTAAGGTTAAGACACTTATTTTGGG 57.369 34.615 0.00 0.00 0.00 4.12
5172 5794 9.106070 CAAAGTTGTACTAAGGTTAAGACACTT 57.894 33.333 0.00 0.00 0.00 3.16
5173 5795 7.226128 GCAAAGTTGTACTAAGGTTAAGACACT 59.774 37.037 0.00 0.00 0.00 3.55
5174 5796 7.011669 TGCAAAGTTGTACTAAGGTTAAGACAC 59.988 37.037 0.00 0.00 0.00 3.67
5175 5797 7.011669 GTGCAAAGTTGTACTAAGGTTAAGACA 59.988 37.037 5.17 0.00 40.10 3.41
5176 5798 7.350467 GTGCAAAGTTGTACTAAGGTTAAGAC 58.650 38.462 5.17 0.00 40.10 3.01
5177 5799 7.486802 GTGCAAAGTTGTACTAAGGTTAAGA 57.513 36.000 5.17 0.00 40.10 2.10
5188 5810 5.290386 ACTGACTCTAGTGCAAAGTTGTAC 58.710 41.667 4.30 4.30 42.99 2.90
5189 5811 5.531122 ACTGACTCTAGTGCAAAGTTGTA 57.469 39.130 0.00 0.00 0.00 2.41
5190 5812 4.408182 ACTGACTCTAGTGCAAAGTTGT 57.592 40.909 0.00 0.00 0.00 3.32
5191 5813 5.289595 TGTACTGACTCTAGTGCAAAGTTG 58.710 41.667 0.00 0.00 39.75 3.16
5192 5814 5.531122 TGTACTGACTCTAGTGCAAAGTT 57.469 39.130 0.00 0.00 39.75 2.66
5193 5815 5.531122 TTGTACTGACTCTAGTGCAAAGT 57.469 39.130 6.91 0.00 45.80 2.66
5196 5818 5.531122 ACTTTGTACTGACTCTAGTGCAA 57.469 39.130 5.52 5.52 46.65 4.08
5197 5819 5.068591 TCAACTTTGTACTGACTCTAGTGCA 59.931 40.000 0.00 0.00 40.72 4.57
5198 5820 5.529791 TCAACTTTGTACTGACTCTAGTGC 58.470 41.667 0.00 0.00 34.39 4.40
5199 5821 6.858993 GTCTCAACTTTGTACTGACTCTAGTG 59.141 42.308 0.00 0.00 32.19 2.74
5200 5822 6.546403 TGTCTCAACTTTGTACTGACTCTAGT 59.454 38.462 0.00 0.00 34.71 2.57
5201 5823 6.858993 GTGTCTCAACTTTGTACTGACTCTAG 59.141 42.308 0.00 0.00 0.00 2.43
5202 5824 6.546403 AGTGTCTCAACTTTGTACTGACTCTA 59.454 38.462 0.00 0.00 0.00 2.43
5203 5825 5.361285 AGTGTCTCAACTTTGTACTGACTCT 59.639 40.000 0.00 0.00 0.00 3.24
5204 5826 5.593010 AGTGTCTCAACTTTGTACTGACTC 58.407 41.667 0.00 0.00 0.00 3.36
5205 5827 5.599999 AGTGTCTCAACTTTGTACTGACT 57.400 39.130 0.00 0.00 0.00 3.41
5206 5828 7.948278 ATAAGTGTCTCAACTTTGTACTGAC 57.052 36.000 0.00 0.00 40.77 3.51
5207 5829 8.958119 AAATAAGTGTCTCAACTTTGTACTGA 57.042 30.769 0.00 0.00 40.77 3.41
5208 5830 9.438291 CAAAATAAGTGTCTCAACTTTGTACTG 57.562 33.333 0.00 0.00 40.77 2.74
5209 5831 8.621286 CCAAAATAAGTGTCTCAACTTTGTACT 58.379 33.333 0.00 0.00 40.77 2.73
5210 5832 7.860872 CCCAAAATAAGTGTCTCAACTTTGTAC 59.139 37.037 0.00 0.00 40.77 2.90
5211 5833 7.776030 TCCCAAAATAAGTGTCTCAACTTTGTA 59.224 33.333 0.00 0.00 40.77 2.41
5212 5834 6.605594 TCCCAAAATAAGTGTCTCAACTTTGT 59.394 34.615 0.00 0.00 40.77 2.83
5213 5835 7.038154 TCCCAAAATAAGTGTCTCAACTTTG 57.962 36.000 0.00 0.00 40.77 2.77
5214 5836 7.255942 CCATCCCAAAATAAGTGTCTCAACTTT 60.256 37.037 0.00 0.00 40.77 2.66
5215 5837 6.209391 CCATCCCAAAATAAGTGTCTCAACTT 59.791 38.462 0.00 0.00 42.89 2.66
5216 5838 5.711976 CCATCCCAAAATAAGTGTCTCAACT 59.288 40.000 0.00 0.00 0.00 3.16
5217 5839 5.710099 TCCATCCCAAAATAAGTGTCTCAAC 59.290 40.000 0.00 0.00 0.00 3.18
5218 5840 5.886609 TCCATCCCAAAATAAGTGTCTCAA 58.113 37.500 0.00 0.00 0.00 3.02
5219 5841 5.500234 CTCCATCCCAAAATAAGTGTCTCA 58.500 41.667 0.00 0.00 0.00 3.27
5220 5842 4.884164 CCTCCATCCCAAAATAAGTGTCTC 59.116 45.833 0.00 0.00 0.00 3.36
5221 5843 4.325344 CCCTCCATCCCAAAATAAGTGTCT 60.325 45.833 0.00 0.00 0.00 3.41
5222 5844 3.954258 CCCTCCATCCCAAAATAAGTGTC 59.046 47.826 0.00 0.00 0.00 3.67
5223 5845 3.596046 TCCCTCCATCCCAAAATAAGTGT 59.404 43.478 0.00 0.00 0.00 3.55
5224 5846 4.210331 CTCCCTCCATCCCAAAATAAGTG 58.790 47.826 0.00 0.00 0.00 3.16
5225 5847 3.858638 ACTCCCTCCATCCCAAAATAAGT 59.141 43.478 0.00 0.00 0.00 2.24
5226 5848 4.526438 ACTCCCTCCATCCCAAAATAAG 57.474 45.455 0.00 0.00 0.00 1.73
5227 5849 6.855061 AGTATACTCCCTCCATCCCAAAATAA 59.145 38.462 0.00 0.00 0.00 1.40
5228 5850 6.272324 CAGTATACTCCCTCCATCCCAAAATA 59.728 42.308 1.26 0.00 0.00 1.40
5229 5851 5.073691 CAGTATACTCCCTCCATCCCAAAAT 59.926 44.000 1.26 0.00 0.00 1.82
5230 5852 4.412199 CAGTATACTCCCTCCATCCCAAAA 59.588 45.833 1.26 0.00 0.00 2.44
5231 5853 3.973973 CAGTATACTCCCTCCATCCCAAA 59.026 47.826 1.26 0.00 0.00 3.28
5232 5854 3.587498 CAGTATACTCCCTCCATCCCAA 58.413 50.000 1.26 0.00 0.00 4.12
5233 5855 2.760025 GCAGTATACTCCCTCCATCCCA 60.760 54.545 1.26 0.00 0.00 4.37
5234 5856 1.903183 GCAGTATACTCCCTCCATCCC 59.097 57.143 1.26 0.00 0.00 3.85
5235 5857 2.896039 AGCAGTATACTCCCTCCATCC 58.104 52.381 1.26 0.00 0.00 3.51
5236 5858 4.020543 CCTAGCAGTATACTCCCTCCATC 58.979 52.174 1.26 0.00 0.00 3.51
5237 5859 3.403051 ACCTAGCAGTATACTCCCTCCAT 59.597 47.826 1.26 0.00 0.00 3.41
5238 5860 2.789992 ACCTAGCAGTATACTCCCTCCA 59.210 50.000 1.26 0.00 0.00 3.86
5239 5861 3.529216 ACCTAGCAGTATACTCCCTCC 57.471 52.381 1.26 0.00 0.00 4.30
5240 5862 5.011586 CCTTACCTAGCAGTATACTCCCTC 58.988 50.000 1.26 0.00 0.00 4.30
5241 5863 4.419537 ACCTTACCTAGCAGTATACTCCCT 59.580 45.833 1.26 5.20 0.00 4.20
5242 5864 4.738685 ACCTTACCTAGCAGTATACTCCC 58.261 47.826 1.26 0.00 0.00 4.30
5243 5865 6.947158 ACATACCTTACCTAGCAGTATACTCC 59.053 42.308 1.26 0.00 0.00 3.85
5244 5866 7.999450 ACATACCTTACCTAGCAGTATACTC 57.001 40.000 1.26 0.00 0.00 2.59
5245 5867 9.463902 CATACATACCTTACCTAGCAGTATACT 57.536 37.037 0.00 0.00 0.00 2.12
5246 5868 9.240734 ACATACATACCTTACCTAGCAGTATAC 57.759 37.037 0.00 0.00 0.00 1.47
5248 5870 9.992442 ATACATACATACCTTACCTAGCAGTAT 57.008 33.333 0.00 0.00 0.00 2.12
5251 5873 8.582657 AGATACATACATACCTTACCTAGCAG 57.417 38.462 0.00 0.00 0.00 4.24
5253 5875 8.901793 GGTAGATACATACATACCTTACCTAGC 58.098 40.741 0.00 0.00 35.75 3.42
5266 5888 8.687242 CAGAGAAAGTGAAGGTAGATACATACA 58.313 37.037 0.00 0.00 0.00 2.29


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.