Multiple sequence alignment - TraesCS2B01G618400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G618400 chr2B 100.000 4289 0 0 1 4289 794497503 794493215 0.000000e+00 7921.0
1 TraesCS2B01G618400 chr2B 81.840 837 75 39 1707 2502 794524205 794525005 2.180000e-177 632.0
2 TraesCS2B01G618400 chr2B 96.875 64 2 0 747 810 794523555 794523618 1.630000e-19 108.0
3 TraesCS2B01G618400 chr2B 100.000 29 0 0 923 951 794523703 794523731 2.000000e-03 54.7
4 TraesCS2B01G618400 chr2D 88.355 2164 104 55 1456 3543 636595699 636593608 0.000000e+00 2464.0
5 TraesCS2B01G618400 chr2D 95.380 368 12 4 3690 4053 636593604 636593238 7.990000e-162 580.0
6 TraesCS2B01G618400 chr2D 84.924 524 57 14 2850 3369 636585053 636584548 1.060000e-140 510.0
7 TraesCS2B01G618400 chr2D 82.287 621 60 30 1916 2502 636614062 636614666 3.850000e-135 492.0
8 TraesCS2B01G618400 chr2D 79.038 520 54 27 2893 3369 636600593 636600086 5.390000e-79 305.0
9 TraesCS2B01G618400 chr2D 89.831 177 12 5 1683 1855 636613863 636614037 5.580000e-54 222.0
10 TraesCS2B01G618400 chr2D 93.939 132 5 3 3539 3668 95519539 95519669 3.380000e-46 196.0
11 TraesCS2B01G618400 chr2D 93.846 130 7 1 3533 3661 381869749 381869620 1.220000e-45 195.0
12 TraesCS2B01G618400 chr2D 86.628 172 14 4 933 1098 636596551 636596383 9.470000e-42 182.0
13 TraesCS2B01G618400 chr2D 83.636 110 5 4 1247 1344 8655784 8655676 1.640000e-14 91.6
14 TraesCS2B01G618400 chr2D 92.982 57 4 0 754 810 636613527 636613583 2.750000e-12 84.2
15 TraesCS2B01G618400 chr2D 96.970 33 1 0 1336 1368 24393276 24393244 5.990000e-04 56.5
16 TraesCS2B01G618400 chr2D 100.000 28 0 0 1341 1368 636596198 636596171 8.000000e-03 52.8
17 TraesCS2B01G618400 chr2A 91.390 662 41 13 6 658 763049899 763050553 0.000000e+00 893.0
18 TraesCS2B01G618400 chr2A 93.078 549 25 7 2002 2544 763052162 763052703 0.000000e+00 791.0
19 TraesCS2B01G618400 chr2A 87.917 720 26 17 2852 3543 763052700 763053386 0.000000e+00 791.0
20 TraesCS2B01G618400 chr2A 81.862 827 75 37 1726 2502 763025399 763024598 1.010000e-175 627.0
21 TraesCS2B01G618400 chr2A 92.308 364 14 3 3690 4052 763053390 763053740 4.950000e-139 505.0
22 TraesCS2B01G618400 chr2A 93.671 316 14 3 3975 4289 763054925 763055235 6.490000e-128 468.0
23 TraesCS2B01G618400 chr2A 88.889 387 24 5 1689 2072 763051668 763052038 3.910000e-125 459.0
24 TraesCS2B01G618400 chr2A 81.282 593 45 30 520 1058 763050481 763051061 1.840000e-113 420.0
25 TraesCS2B01G618400 chr2A 82.025 395 56 12 5 393 763027483 763027098 5.350000e-84 322.0
26 TraesCS2B01G618400 chr2A 79.256 511 61 27 2893 3369 763047194 763047693 8.950000e-82 315.0
27 TraesCS2B01G618400 chr2A 95.897 195 3 2 3975 4169 763054294 763054483 1.160000e-80 311.0
28 TraesCS2B01G618400 chr2A 95.855 193 3 2 3977 4169 763054869 763055056 1.500000e-79 307.0
29 TraesCS2B01G618400 chr2A 94.231 52 2 1 1247 1298 68877720 68877670 1.280000e-10 78.7
30 TraesCS2B01G618400 chr2A 96.970 33 1 0 1336 1368 763051312 763051344 5.990000e-04 56.5
31 TraesCS2B01G618400 chr2A 96.875 32 1 0 1317 1348 216539740 216539771 2.000000e-03 54.7
32 TraesCS2B01G618400 chr5D 92.350 366 11 7 3690 4053 138988400 138988750 4.950000e-139 505.0
33 TraesCS2B01G618400 chr5D 92.268 194 9 3 4094 4285 138988673 138988862 1.970000e-68 270.0
34 TraesCS2B01G618400 chr5D 94.444 126 5 1 3533 3658 565900782 565900905 4.380000e-45 193.0
35 TraesCS2B01G618400 chr5D 84.375 192 24 5 2935 3121 394857874 394857684 2.630000e-42 183.0
36 TraesCS2B01G618400 chr5D 97.778 90 2 0 3454 3543 138988307 138988396 5.740000e-34 156.0
37 TraesCS2B01G618400 chr5D 83.036 112 6 4 1247 1346 434604638 434604528 5.910000e-14 89.8
38 TraesCS2B01G618400 chr1D 91.803 366 13 7 3690 4053 82180783 82181133 1.070000e-135 494.0
39 TraesCS2B01G618400 chr1D 92.268 194 9 3 4094 4285 82181056 82181245 1.970000e-68 270.0
40 TraesCS2B01G618400 chr1D 98.889 90 1 0 3454 3543 82180690 82180779 1.230000e-35 161.0
41 TraesCS2B01G618400 chr1D 83.486 109 7 5 1247 1344 459859041 459859149 1.640000e-14 91.6
42 TraesCS2B01G618400 chr1D 81.818 99 13 5 1253 1347 273145505 273145408 1.280000e-10 78.7
43 TraesCS2B01G618400 chr1D 100.000 29 0 0 1340 1368 79791786 79791814 2.000000e-03 54.7
44 TraesCS2B01G618400 chr4D 91.530 366 14 7 3690 4053 336164256 336164606 4.980000e-134 488.0
45 TraesCS2B01G618400 chr4D 92.784 194 8 3 4094 4285 336164529 336164718 4.220000e-70 276.0
46 TraesCS2B01G618400 chr4D 96.639 119 4 0 3541 3659 428946378 428946496 9.410000e-47 198.0
47 TraesCS2B01G618400 chr4D 97.778 90 2 0 3454 3543 336164163 336164252 5.740000e-34 156.0
48 TraesCS2B01G618400 chr4D 87.273 110 2 1 1247 1344 259496855 259496746 9.750000e-22 115.0
49 TraesCS2B01G618400 chr7D 91.257 366 15 7 3690 4053 34043381 34043731 2.320000e-132 483.0
50 TraesCS2B01G618400 chr7D 92.268 194 9 4 4094 4285 34043654 34043843 1.970000e-68 270.0
51 TraesCS2B01G618400 chr7D 98.889 90 1 0 3454 3543 34043288 34043377 1.230000e-35 161.0
52 TraesCS2B01G618400 chr7B 91.389 360 15 6 3690 4048 680492059 680491715 3.000000e-131 479.0
53 TraesCS2B01G618400 chr7B 91.795 195 9 4 4094 4285 680491786 680491596 9.140000e-67 265.0
54 TraesCS2B01G618400 chr7B 95.868 121 5 0 3539 3659 252178053 252178173 3.380000e-46 196.0
55 TraesCS2B01G618400 chr7B 94.444 90 5 0 3454 3543 680492152 680492063 5.780000e-29 139.0
56 TraesCS2B01G618400 chr4B 90.164 366 19 7 3690 4053 43340359 43340709 1.090000e-125 460.0
57 TraesCS2B01G618400 chr4B 91.710 193 10 3 4095 4285 43340633 43340821 3.290000e-66 263.0
58 TraesCS2B01G618400 chr4B 96.667 90 3 0 3454 3543 43340266 43340355 2.670000e-32 150.0
59 TraesCS2B01G618400 chrUn 90.278 360 17 8 3690 4048 80392201 80391859 5.060000e-124 455.0
60 TraesCS2B01G618400 chrUn 91.237 194 10 4 4094 4285 80391930 80391742 1.530000e-64 257.0
61 TraesCS2B01G618400 chrUn 98.889 90 1 0 3454 3543 80392294 80392205 1.230000e-35 161.0
62 TraesCS2B01G618400 chr3D 90.592 287 10 7 3769 4053 538325355 538325084 8.760000e-97 364.0
63 TraesCS2B01G618400 chr3D 91.753 194 10 3 4094 4285 538325161 538324972 9.140000e-67 265.0
64 TraesCS2B01G618400 chr3D 96.970 33 1 0 1336 1368 414351387 414351355 5.990000e-04 56.5
65 TraesCS2B01G618400 chr6D 95.868 121 5 0 3541 3661 136474715 136474595 3.380000e-46 196.0
66 TraesCS2B01G618400 chr6D 89.726 146 11 4 3516 3661 87087829 87087970 2.630000e-42 183.0
67 TraesCS2B01G618400 chr6D 85.714 112 3 2 1247 1345 234424054 234424165 5.870000e-19 106.0
68 TraesCS2B01G618400 chr6D 96.970 33 1 0 1336 1368 14337709 14337741 5.990000e-04 56.5
69 TraesCS2B01G618400 chr6D 96.970 33 1 0 1336 1368 246775982 246776014 5.990000e-04 56.5
70 TraesCS2B01G618400 chr1B 95.200 125 5 1 3534 3658 541470949 541471072 3.380000e-46 196.0
71 TraesCS2B01G618400 chr3B 93.701 127 8 0 3534 3660 620662789 620662915 1.570000e-44 191.0
72 TraesCS2B01G618400 chr4A 84.768 151 13 7 2975 3118 695315307 695315454 4.470000e-30 143.0
73 TraesCS2B01G618400 chr6B 83.178 107 5 6 1247 1341 433707901 433707796 7.640000e-13 86.1
74 TraesCS2B01G618400 chr1A 83.019 106 6 4 1247 1341 330478134 330478238 7.640000e-13 86.1
75 TraesCS2B01G618400 chr1A 80.531 113 10 6 1247 1347 305864756 305864868 4.600000e-10 76.8
76 TraesCS2B01G618400 chr5A 78.641 103 18 4 1247 1346 448631234 448631133 9.960000e-07 65.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G618400 chr2B 794493215 794497503 4288 True 7921.000000 7921 100.000000 1 4289 1 chr2B.!!$R1 4288
1 TraesCS2B01G618400 chr2B 794523555 794525005 1450 False 264.900000 632 92.905000 747 2502 3 chr2B.!!$F1 1755
2 TraesCS2B01G618400 chr2D 636593238 636600593 7355 True 716.760000 2464 89.880200 933 4053 5 chr2D.!!$R5 3120
3 TraesCS2B01G618400 chr2D 636584548 636585053 505 True 510.000000 510 84.924000 2850 3369 1 chr2D.!!$R4 519
4 TraesCS2B01G618400 chr2D 636613527 636614666 1139 False 266.066667 492 88.366667 754 2502 3 chr2D.!!$F2 1748
5 TraesCS2B01G618400 chr2A 763047194 763055235 8041 False 483.318182 893 90.592091 6 4289 11 chr2A.!!$F2 4283
6 TraesCS2B01G618400 chr2A 763024598 763027483 2885 True 474.500000 627 81.943500 5 2502 2 chr2A.!!$R2 2497
7 TraesCS2B01G618400 chr5D 138988307 138988862 555 False 310.333333 505 94.132000 3454 4285 3 chr5D.!!$F2 831
8 TraesCS2B01G618400 chr1D 82180690 82181245 555 False 308.333333 494 94.320000 3454 4285 3 chr1D.!!$F3 831
9 TraesCS2B01G618400 chr4D 336164163 336164718 555 False 306.666667 488 94.030667 3454 4285 3 chr4D.!!$F2 831
10 TraesCS2B01G618400 chr7D 34043288 34043843 555 False 304.666667 483 94.138000 3454 4285 3 chr7D.!!$F1 831
11 TraesCS2B01G618400 chr7B 680491596 680492152 556 True 294.333333 479 92.542667 3454 4285 3 chr7B.!!$R1 831
12 TraesCS2B01G618400 chr4B 43340266 43340821 555 False 291.000000 460 92.847000 3454 4285 3 chr4B.!!$F1 831
13 TraesCS2B01G618400 chrUn 80391742 80392294 552 True 291.000000 455 93.468000 3454 4285 3 chrUn.!!$R1 831

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
183 1954 0.250234 CTTCATGTTCCTCCTGCCGA 59.750 55.0 0.00 0.0 0.00 5.54 F
1257 4499 0.033306 ACTACTCCCTCCCTCCGTTC 60.033 60.0 0.00 0.0 0.00 3.95 F
1258 4500 0.033405 CTACTCCCTCCCTCCGTTCA 60.033 60.0 0.00 0.0 0.00 3.18 F
1390 4632 0.097674 GCGGCTGCAGTTATTGACAG 59.902 55.0 16.64 0.0 42.15 3.51 F
2662 7030 0.178068 AAGCTAATGTGGTCGCCGAT 59.822 50.0 0.00 0.0 0.00 4.18 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1368 4610 0.605050 TCAATAACTGCAGCCGCACA 60.605 50.0 15.27 0.00 45.36 4.57 R
2662 7030 0.469494 AGCACTGTCATGTGACCACA 59.531 50.0 10.40 5.22 44.15 4.17 R
3141 7513 1.135960 GAGAAGAAGCCATAGCCCCT 58.864 55.0 0.00 0.00 41.25 4.79 R
3279 7651 0.833287 CGGGTCTTGATCACCATCCT 59.167 55.0 0.00 0.00 35.35 3.24 R
3635 8036 0.032813 TCCCTCCGTCCGGAAATACT 60.033 55.0 5.23 0.00 44.66 2.12 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
24 25 1.270839 GCACTTCTTAGAGGCCACACA 60.271 52.381 5.01 0.00 0.00 3.72
25 26 2.810400 GCACTTCTTAGAGGCCACACAA 60.810 50.000 5.01 0.00 0.00 3.33
29 31 4.777896 ACTTCTTAGAGGCCACACAATCTA 59.222 41.667 5.01 0.00 0.00 1.98
35 37 0.322456 GGCCACACAATCTACAGCCA 60.322 55.000 0.00 0.00 38.79 4.75
38 40 1.078709 CACACAATCTACAGCCACCG 58.921 55.000 0.00 0.00 0.00 4.94
50 1821 2.502538 ACAGCCACCGCTTTATACCTTA 59.497 45.455 0.00 0.00 45.55 2.69
99 1870 2.838748 ATCTCCCTCACCGTCAGCGA 62.839 60.000 0.00 0.00 41.33 4.93
104 1875 2.596338 TCACCGTCAGCGACCTCA 60.596 61.111 0.00 0.00 41.33 3.86
117 1888 0.689623 GACCTCATAGGCTCCATGGG 59.310 60.000 13.02 3.69 39.63 4.00
153 1924 4.392940 CCGGATCAAATTGAGGATTAGCT 58.607 43.478 0.00 0.00 0.00 3.32
160 1931 6.715280 TCAAATTGAGGATTAGCTGAACTCT 58.285 36.000 12.62 0.00 0.00 3.24
178 1949 4.100373 ACTCTAAGCTTCATGTTCCTCCT 58.900 43.478 0.00 0.00 0.00 3.69
183 1954 0.250234 CTTCATGTTCCTCCTGCCGA 59.750 55.000 0.00 0.00 0.00 5.54
189 1960 4.804420 TCCTCCTGCCGAGCCCAT 62.804 66.667 0.00 0.00 37.27 4.00
284 2481 1.268899 CTCCTGTGAGGTTACGTCGTT 59.731 52.381 1.78 0.00 36.53 3.85
303 2500 1.080538 GAGGGTGGTAGGTGGAGGT 59.919 63.158 0.00 0.00 0.00 3.85
309 2506 1.689582 GGTAGGTGGAGGTGGGGAG 60.690 68.421 0.00 0.00 0.00 4.30
563 3306 1.182667 ATTTTTGTAAGCGCCTCCCC 58.817 50.000 2.29 0.00 0.00 4.81
579 3322 0.999712 CCCCAAGGACCTACCATTGT 59.000 55.000 0.00 0.00 42.04 2.71
627 3427 7.775053 ATGTTTATTTTTCTAAGTGCCTCCA 57.225 32.000 0.00 0.00 0.00 3.86
646 3446 5.855045 CTCCATAAGGACCTACCATTGTAC 58.145 45.833 0.00 0.00 39.61 2.90
658 3458 5.072600 CCTACCATTGTACAGGGCCTTATTA 59.927 44.000 1.32 0.00 0.00 0.98
659 3459 5.048846 ACCATTGTACAGGGCCTTATTAG 57.951 43.478 1.32 0.00 0.00 1.73
660 3460 4.477213 ACCATTGTACAGGGCCTTATTAGT 59.523 41.667 1.32 0.00 0.00 2.24
661 3461 4.821805 CCATTGTACAGGGCCTTATTAGTG 59.178 45.833 1.32 0.00 0.00 2.74
822 3661 1.060842 CGAGTAGAGACGAACACCGAG 59.939 57.143 0.00 0.00 41.76 4.63
859 3698 3.681593 TTGATGGGCAGTGGAATTTTG 57.318 42.857 0.00 0.00 0.00 2.44
884 3724 6.758886 GGACTTGTGGATCTGAAACATACTAG 59.241 42.308 0.00 0.00 0.00 2.57
899 3744 9.448294 GAAACATACTAGTACTAGATTCGTTGG 57.552 37.037 31.93 15.56 36.97 3.77
961 4072 1.826327 CTTCCGCTGTGTGTTTGTTG 58.174 50.000 0.00 0.00 0.00 3.33
971 4082 0.812549 GTGTTTGTTGGTCCCGTGTT 59.187 50.000 0.00 0.00 0.00 3.32
972 4083 1.202817 GTGTTTGTTGGTCCCGTGTTT 59.797 47.619 0.00 0.00 0.00 2.83
973 4084 2.422832 GTGTTTGTTGGTCCCGTGTTTA 59.577 45.455 0.00 0.00 0.00 2.01
974 4085 3.087031 TGTTTGTTGGTCCCGTGTTTAA 58.913 40.909 0.00 0.00 0.00 1.52
1059 4189 3.739519 GCCGAGTCATGAGTAAGCATCTT 60.740 47.826 15.93 0.00 0.00 2.40
1060 4190 3.801050 CCGAGTCATGAGTAAGCATCTTG 59.199 47.826 2.17 0.00 0.00 3.02
1062 4192 4.867047 CGAGTCATGAGTAAGCATCTTGTT 59.133 41.667 2.17 0.00 0.00 2.83
1063 4193 5.349817 CGAGTCATGAGTAAGCATCTTGTTT 59.650 40.000 2.17 0.00 0.00 2.83
1071 4228 8.484641 TGAGTAAGCATCTTGTTTATCTCTTG 57.515 34.615 0.00 0.00 30.65 3.02
1082 4239 8.621286 TCTTGTTTATCTCTTGTTTGAGTTTCC 58.379 33.333 0.00 0.00 35.68 3.13
1161 4401 3.433615 CGAGGGTTTGTTGCTTCTTCTAG 59.566 47.826 0.00 0.00 0.00 2.43
1169 4409 3.391296 TGTTGCTTCTTCTAGTTGAGGGT 59.609 43.478 0.00 0.00 0.00 4.34
1173 4413 4.141482 TGCTTCTTCTAGTTGAGGGTTTGT 60.141 41.667 0.00 0.00 0.00 2.83
1174 4414 4.822350 GCTTCTTCTAGTTGAGGGTTTGTT 59.178 41.667 0.00 0.00 0.00 2.83
1206 4447 3.786516 TTCTCCCAAACGTCCAAAAAC 57.213 42.857 0.00 0.00 0.00 2.43
1234 4476 1.441016 GCGCCGCTTTCAAGTCTTG 60.441 57.895 0.00 6.21 0.00 3.02
1246 4488 5.464030 TTCAAGTCTTGTGTACTACTCCC 57.536 43.478 12.30 0.00 0.00 4.30
1247 4489 4.737578 TCAAGTCTTGTGTACTACTCCCT 58.262 43.478 12.30 0.00 0.00 4.20
1248 4490 4.765856 TCAAGTCTTGTGTACTACTCCCTC 59.234 45.833 12.30 0.00 0.00 4.30
1249 4491 3.699413 AGTCTTGTGTACTACTCCCTCC 58.301 50.000 0.00 0.00 0.00 4.30
1250 4492 2.759535 GTCTTGTGTACTACTCCCTCCC 59.240 54.545 0.00 0.00 0.00 4.30
1251 4493 2.653366 TCTTGTGTACTACTCCCTCCCT 59.347 50.000 0.00 0.00 0.00 4.20
1252 4494 2.822707 TGTGTACTACTCCCTCCCTC 57.177 55.000 0.00 0.00 0.00 4.30
1253 4495 1.287146 TGTGTACTACTCCCTCCCTCC 59.713 57.143 0.00 0.00 0.00 4.30
1254 4496 0.549950 TGTACTACTCCCTCCCTCCG 59.450 60.000 0.00 0.00 0.00 4.63
1255 4497 0.550432 GTACTACTCCCTCCCTCCGT 59.450 60.000 0.00 0.00 0.00 4.69
1256 4498 1.064091 GTACTACTCCCTCCCTCCGTT 60.064 57.143 0.00 0.00 0.00 4.44
1257 4499 0.033306 ACTACTCCCTCCCTCCGTTC 60.033 60.000 0.00 0.00 0.00 3.95
1258 4500 0.033405 CTACTCCCTCCCTCCGTTCA 60.033 60.000 0.00 0.00 0.00 3.18
1259 4501 0.324091 TACTCCCTCCCTCCGTTCAC 60.324 60.000 0.00 0.00 0.00 3.18
1260 4502 1.305381 CTCCCTCCCTCCGTTCACT 60.305 63.158 0.00 0.00 0.00 3.41
1261 4503 0.905337 CTCCCTCCCTCCGTTCACTT 60.905 60.000 0.00 0.00 0.00 3.16
1262 4504 0.473117 TCCCTCCCTCCGTTCACTTT 60.473 55.000 0.00 0.00 0.00 2.66
1263 4505 0.400594 CCCTCCCTCCGTTCACTTTT 59.599 55.000 0.00 0.00 0.00 2.27
1264 4506 1.523758 CCTCCCTCCGTTCACTTTTG 58.476 55.000 0.00 0.00 0.00 2.44
1265 4507 1.202770 CCTCCCTCCGTTCACTTTTGT 60.203 52.381 0.00 0.00 0.00 2.83
1266 4508 2.038033 CCTCCCTCCGTTCACTTTTGTA 59.962 50.000 0.00 0.00 0.00 2.41
1267 4509 3.495453 CCTCCCTCCGTTCACTTTTGTAA 60.495 47.826 0.00 0.00 0.00 2.41
1268 4510 3.735591 TCCCTCCGTTCACTTTTGTAAG 58.264 45.455 0.00 0.00 37.40 2.34
1269 4511 3.135167 TCCCTCCGTTCACTTTTGTAAGT 59.865 43.478 0.00 0.00 45.40 2.24
1270 4512 3.497262 CCCTCCGTTCACTTTTGTAAGTC 59.503 47.826 0.00 0.00 42.67 3.01
1271 4513 3.183775 CCTCCGTTCACTTTTGTAAGTCG 59.816 47.826 0.00 0.00 42.67 4.18
1272 4514 3.784338 TCCGTTCACTTTTGTAAGTCGT 58.216 40.909 0.00 0.00 42.67 4.34
1273 4515 4.183101 TCCGTTCACTTTTGTAAGTCGTT 58.817 39.130 0.00 0.00 42.67 3.85
1274 4516 4.630940 TCCGTTCACTTTTGTAAGTCGTTT 59.369 37.500 0.00 0.00 42.67 3.60
1275 4517 4.959757 CCGTTCACTTTTGTAAGTCGTTTC 59.040 41.667 0.00 0.00 42.67 2.78
1276 4518 5.446206 CCGTTCACTTTTGTAAGTCGTTTCA 60.446 40.000 0.00 0.00 42.67 2.69
1277 4519 5.671140 CGTTCACTTTTGTAAGTCGTTTCAG 59.329 40.000 0.00 0.00 42.67 3.02
1278 4520 6.454583 CGTTCACTTTTGTAAGTCGTTTCAGA 60.455 38.462 0.00 0.00 42.67 3.27
1279 4521 6.340537 TCACTTTTGTAAGTCGTTTCAGAC 57.659 37.500 0.00 0.00 42.67 3.51
1280 4522 5.870433 TCACTTTTGTAAGTCGTTTCAGACA 59.130 36.000 0.00 0.00 42.67 3.41
1281 4523 6.369340 TCACTTTTGTAAGTCGTTTCAGACAA 59.631 34.615 0.00 0.00 42.67 3.18
1282 4524 6.682863 CACTTTTGTAAGTCGTTTCAGACAAG 59.317 38.462 0.00 0.00 42.67 3.16
1283 4525 6.370718 ACTTTTGTAAGTCGTTTCAGACAAGT 59.629 34.615 0.00 0.00 40.60 3.16
1284 4526 5.712217 TTGTAAGTCGTTTCAGACAAGTG 57.288 39.130 0.00 0.00 43.24 3.16
1285 4527 5.001237 TGTAAGTCGTTTCAGACAAGTGA 57.999 39.130 0.00 0.00 43.24 3.41
1286 4528 5.412640 TGTAAGTCGTTTCAGACAAGTGAA 58.587 37.500 0.00 0.00 43.24 3.18
1287 4529 5.870433 TGTAAGTCGTTTCAGACAAGTGAAA 59.130 36.000 0.00 0.00 42.79 2.69
1288 4530 5.873179 AAGTCGTTTCAGACAAGTGAAAA 57.127 34.783 0.76 0.00 45.65 2.29
1289 4531 5.873179 AGTCGTTTCAGACAAGTGAAAAA 57.127 34.783 0.76 0.00 45.65 1.94
1290 4532 6.436843 AGTCGTTTCAGACAAGTGAAAAAT 57.563 33.333 0.76 0.00 45.65 1.82
1291 4533 7.548196 AGTCGTTTCAGACAAGTGAAAAATA 57.452 32.000 0.76 0.00 45.65 1.40
1292 4534 7.630924 AGTCGTTTCAGACAAGTGAAAAATAG 58.369 34.615 0.76 0.00 45.65 1.73
1293 4535 7.494625 AGTCGTTTCAGACAAGTGAAAAATAGA 59.505 33.333 0.76 0.00 45.65 1.98
1294 4536 7.583040 GTCGTTTCAGACAAGTGAAAAATAGAC 59.417 37.037 0.76 5.58 45.65 2.59
1295 4537 7.494625 TCGTTTCAGACAAGTGAAAAATAGACT 59.505 33.333 0.76 0.00 45.65 3.24
1296 4538 7.584123 CGTTTCAGACAAGTGAAAAATAGACTG 59.416 37.037 0.76 0.00 45.65 3.51
1297 4539 8.398665 GTTTCAGACAAGTGAAAAATAGACTGT 58.601 33.333 0.76 0.00 45.65 3.55
1298 4540 7.715265 TCAGACAAGTGAAAAATAGACTGTC 57.285 36.000 0.00 0.00 0.00 3.51
1299 4541 7.500992 TCAGACAAGTGAAAAATAGACTGTCT 58.499 34.615 15.57 15.57 32.82 3.41
1300 4542 7.439356 TCAGACAAGTGAAAAATAGACTGTCTG 59.561 37.037 20.19 18.30 41.32 3.51
1301 4543 7.439356 CAGACAAGTGAAAAATAGACTGTCTGA 59.561 37.037 20.19 5.16 41.79 3.27
1302 4544 7.987458 AGACAAGTGAAAAATAGACTGTCTGAA 59.013 33.333 20.19 1.37 32.11 3.02
1303 4545 8.506168 ACAAGTGAAAAATAGACTGTCTGAAA 57.494 30.769 20.19 0.58 0.00 2.69
1304 4546 9.125026 ACAAGTGAAAAATAGACTGTCTGAAAT 57.875 29.630 20.19 3.17 0.00 2.17
1305 4547 9.956720 CAAGTGAAAAATAGACTGTCTGAAATT 57.043 29.630 20.19 9.26 0.00 1.82
1314 4556 6.874288 AGACTGTCTGAAATTTCTTCAAGG 57.126 37.500 18.64 7.64 0.00 3.61
1315 4557 5.240403 AGACTGTCTGAAATTTCTTCAAGGC 59.760 40.000 18.64 12.86 0.00 4.35
1316 4558 4.279420 ACTGTCTGAAATTTCTTCAAGGCC 59.721 41.667 18.64 0.00 0.00 5.19
1317 4559 4.473444 TGTCTGAAATTTCTTCAAGGCCT 58.527 39.130 18.64 0.00 0.00 5.19
1318 4560 4.895297 TGTCTGAAATTTCTTCAAGGCCTT 59.105 37.500 13.78 13.78 0.00 4.35
1319 4561 6.068010 TGTCTGAAATTTCTTCAAGGCCTTA 58.932 36.000 20.00 2.00 0.00 2.69
1320 4562 6.721208 TGTCTGAAATTTCTTCAAGGCCTTAT 59.279 34.615 20.00 3.68 0.00 1.73
1321 4563 7.888021 TGTCTGAAATTTCTTCAAGGCCTTATA 59.112 33.333 20.00 6.65 0.00 0.98
1322 4564 8.739972 GTCTGAAATTTCTTCAAGGCCTTATAA 58.260 33.333 20.00 14.54 0.00 0.98
1323 4565 9.308000 TCTGAAATTTCTTCAAGGCCTTATAAA 57.692 29.630 20.00 15.58 0.00 1.40
1324 4566 9.927668 CTGAAATTTCTTCAAGGCCTTATAAAA 57.072 29.630 20.00 15.91 0.00 1.52
1325 4567 9.927668 TGAAATTTCTTCAAGGCCTTATAAAAG 57.072 29.630 20.00 18.05 0.00 2.27
1326 4568 9.929180 GAAATTTCTTCAAGGCCTTATAAAAGT 57.071 29.630 20.00 12.48 0.00 2.66
1327 4569 9.710900 AAATTTCTTCAAGGCCTTATAAAAGTG 57.289 29.630 20.00 3.72 0.00 3.16
1328 4570 8.650143 ATTTCTTCAAGGCCTTATAAAAGTGA 57.350 30.769 20.00 6.54 0.00 3.41
1329 4571 8.472007 TTTCTTCAAGGCCTTATAAAAGTGAA 57.528 30.769 20.00 14.48 0.00 3.18
1330 4572 7.448748 TCTTCAAGGCCTTATAAAAGTGAAC 57.551 36.000 20.00 0.00 0.00 3.18
1331 4573 5.873179 TCAAGGCCTTATAAAAGTGAACG 57.127 39.130 20.00 0.44 0.00 3.95
1332 4574 4.698304 TCAAGGCCTTATAAAAGTGAACGG 59.302 41.667 20.00 0.00 0.00 4.44
1333 4575 4.563140 AGGCCTTATAAAAGTGAACGGA 57.437 40.909 0.00 0.00 0.00 4.69
1334 4576 4.514401 AGGCCTTATAAAAGTGAACGGAG 58.486 43.478 0.00 0.00 0.00 4.63
1338 4580 5.522824 GCCTTATAAAAGTGAACGGAGGTAG 59.477 44.000 0.00 0.00 0.00 3.18
1368 4610 5.543507 AGTCTCAACATTCAGACAGACTT 57.456 39.130 0.00 0.00 41.43 3.01
1372 4614 3.561310 TCAACATTCAGACAGACTTGTGC 59.439 43.478 0.00 0.00 37.76 4.57
1373 4615 2.138320 ACATTCAGACAGACTTGTGCG 58.862 47.619 0.00 0.00 37.76 5.34
1374 4616 1.462283 CATTCAGACAGACTTGTGCGG 59.538 52.381 0.00 0.00 37.76 5.69
1378 4620 2.959357 GACAGACTTGTGCGGCTGC 61.959 63.158 11.65 11.65 37.76 5.25
1389 4631 2.170738 GCGGCTGCAGTTATTGACA 58.829 52.632 16.64 0.00 42.15 3.58
1390 4632 0.097674 GCGGCTGCAGTTATTGACAG 59.902 55.000 16.64 0.00 42.15 3.51
1391 4633 1.725641 CGGCTGCAGTTATTGACAGA 58.274 50.000 16.64 0.00 34.74 3.41
1392 4634 2.076100 CGGCTGCAGTTATTGACAGAA 58.924 47.619 16.64 0.00 34.74 3.02
1393 4635 2.483877 CGGCTGCAGTTATTGACAGAAA 59.516 45.455 16.64 0.00 34.74 2.52
1394 4636 3.667960 CGGCTGCAGTTATTGACAGAAAC 60.668 47.826 16.64 0.00 34.74 2.78
1395 4637 3.503748 GGCTGCAGTTATTGACAGAAACT 59.496 43.478 16.64 0.04 34.74 2.66
1396 4638 4.695455 GGCTGCAGTTATTGACAGAAACTA 59.305 41.667 16.64 0.00 34.74 2.24
1397 4639 5.163814 GGCTGCAGTTATTGACAGAAACTAG 60.164 44.000 16.64 0.00 34.74 2.57
1398 4640 5.409826 GCTGCAGTTATTGACAGAAACTAGT 59.590 40.000 16.64 0.00 34.74 2.57
1399 4641 6.590292 GCTGCAGTTATTGACAGAAACTAGTA 59.410 38.462 16.64 0.96 34.74 1.82
1400 4642 7.278868 GCTGCAGTTATTGACAGAAACTAGTAT 59.721 37.037 16.64 0.00 34.74 2.12
1401 4643 8.479313 TGCAGTTATTGACAGAAACTAGTATG 57.521 34.615 0.00 0.00 32.35 2.39
1402 4644 7.549134 TGCAGTTATTGACAGAAACTAGTATGG 59.451 37.037 0.00 0.00 32.35 2.74
1403 4645 7.549488 GCAGTTATTGACAGAAACTAGTATGGT 59.451 37.037 0.00 0.00 32.35 3.55
1404 4646 9.088512 CAGTTATTGACAGAAACTAGTATGGTC 57.911 37.037 0.00 3.01 32.35 4.02
1409 4651 4.822026 ACAGAAACTAGTATGGTCACTGC 58.178 43.478 0.00 0.00 36.63 4.40
1411 4653 5.046304 ACAGAAACTAGTATGGTCACTGCAT 60.046 40.000 0.00 0.00 36.63 3.96
1413 4655 5.187772 AGAAACTAGTATGGTCACTGCATCA 59.812 40.000 0.00 0.00 0.00 3.07
1445 5416 4.990543 TTCAGAGTTGAATGCACTAACG 57.009 40.909 0.00 0.00 38.37 3.18
1453 5424 2.811431 TGAATGCACTAACGGTTGGAAG 59.189 45.455 11.41 4.43 0.00 3.46
1486 5458 4.503910 ACCTGAAACAAAGCAAGGAAAAC 58.496 39.130 0.00 0.00 0.00 2.43
1510 5482 9.491675 AACAGATATTATCTCATCTTGCTCTTG 57.508 33.333 3.10 0.00 37.58 3.02
1570 5542 4.643795 GCTGCCTGCATTCACCTA 57.356 55.556 0.00 0.00 42.31 3.08
1583 5555 5.088680 CATTCACCTAAAATGCCCAATGT 57.911 39.130 0.00 0.00 0.00 2.71
1586 5558 6.865834 TTCACCTAAAATGCCCAATGTTAT 57.134 33.333 0.00 0.00 0.00 1.89
1587 5559 6.219417 TCACCTAAAATGCCCAATGTTATG 57.781 37.500 0.00 0.00 0.00 1.90
1597 5569 4.018324 TGCCCAATGTTATGTTAGGGTACA 60.018 41.667 0.00 0.00 38.56 2.90
1601 5573 6.317893 CCCAATGTTATGTTAGGGTACAACTC 59.682 42.308 0.00 0.00 0.00 3.01
1619 5641 4.457834 ACTCAACTCTATGCCTGTACAC 57.542 45.455 0.00 0.00 0.00 2.90
1622 5644 5.715279 ACTCAACTCTATGCCTGTACACTAA 59.285 40.000 0.00 0.00 0.00 2.24
1623 5645 5.962433 TCAACTCTATGCCTGTACACTAAC 58.038 41.667 0.00 0.00 0.00 2.34
1624 5646 5.715279 TCAACTCTATGCCTGTACACTAACT 59.285 40.000 0.00 0.00 0.00 2.24
1625 5647 6.888088 TCAACTCTATGCCTGTACACTAACTA 59.112 38.462 0.00 0.00 0.00 2.24
1626 5648 7.560262 TCAACTCTATGCCTGTACACTAACTAT 59.440 37.037 0.00 0.00 0.00 2.12
1627 5649 7.899648 ACTCTATGCCTGTACACTAACTATT 57.100 36.000 0.00 0.00 0.00 1.73
1629 5651 8.848182 ACTCTATGCCTGTACACTAACTATTAC 58.152 37.037 0.00 0.00 0.00 1.89
1635 5657 6.973474 GCCTGTACACTAACTATTACACAGAG 59.027 42.308 0.00 0.00 35.32 3.35
1639 5661 8.944029 TGTACACTAACTATTACACAGAGTCTC 58.056 37.037 0.00 0.00 0.00 3.36
1644 5666 4.936802 ACTATTACACAGAGTCTCCCTGT 58.063 43.478 0.00 0.93 44.92 4.00
1645 5667 4.951094 ACTATTACACAGAGTCTCCCTGTC 59.049 45.833 3.76 0.00 42.44 3.51
1646 5668 2.971901 TACACAGAGTCTCCCTGTCA 57.028 50.000 3.76 0.00 42.44 3.58
1648 5670 3.458044 ACACAGAGTCTCCCTGTCATA 57.542 47.619 0.00 0.00 42.44 2.15
1649 5671 3.987745 ACACAGAGTCTCCCTGTCATAT 58.012 45.455 0.00 0.00 42.44 1.78
1650 5672 3.957497 ACACAGAGTCTCCCTGTCATATC 59.043 47.826 0.00 0.00 42.44 1.63
1651 5673 4.214310 CACAGAGTCTCCCTGTCATATCT 58.786 47.826 0.00 0.00 42.44 1.98
1652 5674 4.037803 CACAGAGTCTCCCTGTCATATCTG 59.962 50.000 0.00 0.00 42.44 2.90
1653 5675 4.214310 CAGAGTCTCCCTGTCATATCTGT 58.786 47.826 0.00 0.00 0.00 3.41
1655 5677 4.079500 AGAGTCTCCCTGTCATATCTGTGA 60.080 45.833 0.00 0.00 0.00 3.58
1656 5678 4.813809 AGTCTCCCTGTCATATCTGTGAT 58.186 43.478 0.00 0.00 0.00 3.06
1657 5679 5.958321 AGTCTCCCTGTCATATCTGTGATA 58.042 41.667 0.00 0.00 0.00 2.15
1659 5681 5.536538 GTCTCCCTGTCATATCTGTGATACA 59.463 44.000 0.00 0.00 0.00 2.29
1660 5682 6.040955 GTCTCCCTGTCATATCTGTGATACAA 59.959 42.308 0.00 0.00 0.00 2.41
1661 5683 6.611236 TCTCCCTGTCATATCTGTGATACAAA 59.389 38.462 0.00 0.00 0.00 2.83
1662 5684 6.582636 TCCCTGTCATATCTGTGATACAAAC 58.417 40.000 0.00 0.00 0.00 2.93
1664 5686 6.703607 CCCTGTCATATCTGTGATACAAACTC 59.296 42.308 0.00 0.00 0.00 3.01
1665 5687 7.418368 CCCTGTCATATCTGTGATACAAACTCT 60.418 40.741 0.00 0.00 0.00 3.24
1668 5690 9.971922 TGTCATATCTGTGATACAAACTCTATG 57.028 33.333 0.00 0.00 0.00 2.23
1671 5693 9.433153 CATATCTGTGATACAAACTCTATGCAT 57.567 33.333 3.79 3.79 0.00 3.96
1673 5695 6.643388 TCTGTGATACAAACTCTATGCATGT 58.357 36.000 10.16 0.04 0.00 3.21
1675 5697 7.706607 TCTGTGATACAAACTCTATGCATGTAC 59.293 37.037 10.16 0.00 30.06 2.90
1677 5699 7.277760 TGTGATACAAACTCTATGCATGTACAC 59.722 37.037 10.16 12.75 33.79 2.90
1678 5700 7.492669 GTGATACAAACTCTATGCATGTACACT 59.507 37.037 10.16 0.00 32.34 3.55
1680 5702 9.186323 GATACAAACTCTATGCATGTACACTAG 57.814 37.037 10.16 0.00 30.06 2.57
1681 5703 6.936279 ACAAACTCTATGCATGTACACTAGT 58.064 36.000 10.16 0.00 0.00 2.57
1682 5704 8.063200 ACAAACTCTATGCATGTACACTAGTA 57.937 34.615 10.16 0.00 0.00 1.82
1683 5705 8.696374 ACAAACTCTATGCATGTACACTAGTAT 58.304 33.333 10.16 0.00 31.84 2.12
1684 5706 9.534565 CAAACTCTATGCATGTACACTAGTATT 57.465 33.333 10.16 0.00 31.84 1.89
1687 5709 9.350951 ACTCTATGCATGTACACTAGTATTACA 57.649 33.333 10.16 15.44 31.84 2.41
1711 5733 5.163478 ACAGATTCTTTGCTGCTCTGTTTTT 60.163 36.000 12.49 0.00 42.85 1.94
1833 5902 2.493675 GACAAGATGGAGGAAAAAGGGC 59.506 50.000 0.00 0.00 0.00 5.19
1884 5986 1.338020 GTGCAGAGGAAACAACCCAAG 59.662 52.381 0.00 0.00 0.00 3.61
1894 5996 1.007849 CAACCCAAGAAAACGCCCG 60.008 57.895 0.00 0.00 0.00 6.13
1942 6044 4.277515 TCTTCAGATCACAACTCCTTGG 57.722 45.455 0.00 0.00 0.00 3.61
2202 6567 6.064846 ACACATTTCTTCACTGCTGTTAAG 57.935 37.500 10.49 10.49 0.00 1.85
2203 6568 5.590259 ACACATTTCTTCACTGCTGTTAAGT 59.410 36.000 14.86 0.00 31.39 2.24
2204 6569 6.765989 ACACATTTCTTCACTGCTGTTAAGTA 59.234 34.615 14.86 5.49 31.39 2.24
2225 6590 6.311735 AGTAGTATGTTGATGGTGGGTTTTT 58.688 36.000 0.00 0.00 0.00 1.94
2390 6758 3.944087 AGAGCAGTTATGTTCTGGTTCC 58.056 45.455 0.00 0.00 44.40 3.62
2391 6759 3.327757 AGAGCAGTTATGTTCTGGTTCCA 59.672 43.478 0.00 0.00 44.40 3.53
2421 6789 1.419387 CCATTCCAGGATCCTCAGACC 59.581 57.143 12.69 0.00 0.00 3.85
2444 6812 8.783660 ACCAAGACCTACTGATTTATCATAGA 57.216 34.615 0.00 0.00 36.02 1.98
2464 6832 0.808060 GAAACTCCCGCTAGCTGCTC 60.808 60.000 13.93 0.00 40.11 4.26
2590 6958 0.548510 GGGCCTGCCTCATTTACTCT 59.451 55.000 8.29 0.00 36.10 3.24
2591 6959 1.673168 GGCCTGCCTCATTTACTCTG 58.327 55.000 0.00 0.00 0.00 3.35
2592 6960 1.020437 GCCTGCCTCATTTACTCTGC 58.980 55.000 0.00 0.00 0.00 4.26
2593 6961 1.679944 GCCTGCCTCATTTACTCTGCA 60.680 52.381 0.00 0.00 0.00 4.41
2594 6962 2.928334 CCTGCCTCATTTACTCTGCAT 58.072 47.619 0.00 0.00 0.00 3.96
2595 6963 3.285484 CCTGCCTCATTTACTCTGCATT 58.715 45.455 0.00 0.00 0.00 3.56
2657 7025 3.510388 TCTGAGAAGCTAATGTGGTCG 57.490 47.619 0.00 0.00 0.00 4.79
2659 7027 1.291132 GAGAAGCTAATGTGGTCGCC 58.709 55.000 0.00 0.00 0.00 5.54
2660 7028 0.460284 AGAAGCTAATGTGGTCGCCG 60.460 55.000 0.00 0.00 0.00 6.46
2661 7029 0.459585 GAAGCTAATGTGGTCGCCGA 60.460 55.000 0.00 0.00 0.00 5.54
2662 7030 0.178068 AAGCTAATGTGGTCGCCGAT 59.822 50.000 0.00 0.00 0.00 4.18
2664 7032 0.810031 GCTAATGTGGTCGCCGATGT 60.810 55.000 0.00 0.00 0.00 3.06
2665 7033 0.930310 CTAATGTGGTCGCCGATGTG 59.070 55.000 0.00 0.00 0.00 3.21
2666 7034 0.461163 TAATGTGGTCGCCGATGTGG 60.461 55.000 0.00 0.00 42.50 4.17
2667 7035 2.463589 AATGTGGTCGCCGATGTGGT 62.464 55.000 0.00 0.00 41.21 4.16
2668 7036 2.813908 GTGGTCGCCGATGTGGTC 60.814 66.667 0.00 0.00 41.21 4.02
2669 7037 3.307108 TGGTCGCCGATGTGGTCA 61.307 61.111 0.00 0.00 41.21 4.02
2670 7038 2.813908 GGTCGCCGATGTGGTCAC 60.814 66.667 0.00 0.00 41.21 3.67
2671 7039 2.048597 GTCGCCGATGTGGTCACA 60.049 61.111 6.24 6.24 46.44 3.58
2683 7051 2.302733 TGTGGTCACATGACAGTGCTAT 59.697 45.455 13.77 0.00 46.47 2.97
2722 7090 3.781760 CATTGGTTGCTGCCCTGT 58.218 55.556 0.00 0.00 0.00 4.00
2723 7091 1.290955 CATTGGTTGCTGCCCTGTG 59.709 57.895 0.00 0.00 0.00 3.66
2737 7106 5.172687 TGCCCTGTGTTCAATACTATCAA 57.827 39.130 0.00 0.00 0.00 2.57
2774 7143 3.603965 TTTGGTTGGTAATGTCCTGGT 57.396 42.857 0.00 0.00 0.00 4.00
2826 7196 5.465532 TTTTGCAGGCATGAACTTCATTA 57.534 34.783 0.62 0.00 34.28 1.90
2881 7251 3.125573 GGAAGAGGAAACGCCGGC 61.126 66.667 19.07 19.07 43.43 6.13
2917 7287 3.197983 GCCTTACCAAGTCCACTATGAGT 59.802 47.826 0.00 0.00 0.00 3.41
3014 7386 9.237846 GCACCTGCATTTTTATTTTCTAGATAC 57.762 33.333 0.00 0.00 41.59 2.24
3016 7388 9.700831 ACCTGCATTTTTATTTTCTAGATACCT 57.299 29.630 0.00 0.00 0.00 3.08
3017 7389 9.956720 CCTGCATTTTTATTTTCTAGATACCTG 57.043 33.333 0.00 0.00 0.00 4.00
3045 7417 7.532682 TTGTTTTAATCTCTGTTGTTTTGCC 57.467 32.000 0.00 0.00 0.00 4.52
3106 7478 3.316029 TGTTTGTGAAGATGCAGAAGTGG 59.684 43.478 0.00 0.00 0.00 4.00
3141 7513 5.762179 TGGAAAAGGCTTCTTCTAGATCA 57.238 39.130 0.00 0.00 0.00 2.92
3200 7572 2.413142 GCAATGCCACTGGAGGAGC 61.413 63.158 0.00 0.00 0.00 4.70
3201 7573 1.001764 CAATGCCACTGGAGGAGCA 60.002 57.895 0.00 0.00 40.00 4.26
3202 7574 1.030488 CAATGCCACTGGAGGAGCAG 61.030 60.000 0.00 0.00 38.89 4.24
3203 7575 2.833604 AATGCCACTGGAGGAGCAGC 62.834 60.000 0.00 0.00 38.89 5.25
3204 7576 3.715097 GCCACTGGAGGAGCAGCT 61.715 66.667 0.00 0.00 0.00 4.24
3205 7577 2.268280 CCACTGGAGGAGCAGCTG 59.732 66.667 10.11 10.11 0.00 4.24
3206 7578 2.436292 CACTGGAGGAGCAGCTGC 60.436 66.667 31.53 31.53 42.49 5.25
3279 7651 0.850100 TGCTGGTCCCTCCTGAAAAA 59.150 50.000 0.00 0.00 37.33 1.94
3296 7668 4.766891 TGAAAAAGGATGGTGATCAAGACC 59.233 41.667 0.00 0.00 0.00 3.85
3427 7822 7.204243 AGCATATATATGGCTGGAGAAATGA 57.796 36.000 21.50 0.00 34.32 2.57
3527 7928 8.336801 ACAGGTTTCCTCTCATGTTTAATTAC 57.663 34.615 0.00 0.00 0.00 1.89
3553 7954 9.828039 CTTAAATTATTAAGTACTCCCTCCGTT 57.172 33.333 0.00 0.00 41.97 4.44
3554 7955 9.822185 TTAAATTATTAAGTACTCCCTCCGTTC 57.178 33.333 0.00 0.00 0.00 3.95
3555 7956 5.505173 TTATTAAGTACTCCCTCCGTTCG 57.495 43.478 0.00 0.00 0.00 3.95
3556 7957 2.787473 TAAGTACTCCCTCCGTTCGA 57.213 50.000 0.00 0.00 0.00 3.71
3557 7958 1.915141 AAGTACTCCCTCCGTTCGAA 58.085 50.000 0.00 0.00 0.00 3.71
3558 7959 1.915141 AGTACTCCCTCCGTTCGAAA 58.085 50.000 0.00 0.00 0.00 3.46
3559 7960 2.242043 AGTACTCCCTCCGTTCGAAAA 58.758 47.619 0.00 0.00 0.00 2.29
3560 7961 2.830321 AGTACTCCCTCCGTTCGAAAAT 59.170 45.455 0.00 0.00 0.00 1.82
3561 7962 4.019174 AGTACTCCCTCCGTTCGAAAATA 58.981 43.478 0.00 0.00 0.00 1.40
3562 7963 3.242549 ACTCCCTCCGTTCGAAAATAC 57.757 47.619 0.00 0.00 0.00 1.89
3563 7964 2.830321 ACTCCCTCCGTTCGAAAATACT 59.170 45.455 0.00 0.00 0.00 2.12
3564 7965 3.260128 ACTCCCTCCGTTCGAAAATACTT 59.740 43.478 0.00 0.00 0.00 2.24
3565 7966 3.592059 TCCCTCCGTTCGAAAATACTTG 58.408 45.455 0.00 0.00 0.00 3.16
3566 7967 3.007182 TCCCTCCGTTCGAAAATACTTGT 59.993 43.478 0.00 0.00 0.00 3.16
3567 7968 3.370061 CCCTCCGTTCGAAAATACTTGTC 59.630 47.826 0.00 0.00 0.00 3.18
3568 7969 3.991773 CCTCCGTTCGAAAATACTTGTCA 59.008 43.478 0.00 0.00 0.00 3.58
3569 7970 4.091509 CCTCCGTTCGAAAATACTTGTCAG 59.908 45.833 0.00 0.00 0.00 3.51
3570 7971 4.873817 TCCGTTCGAAAATACTTGTCAGA 58.126 39.130 0.00 0.00 0.00 3.27
3571 7972 4.921515 TCCGTTCGAAAATACTTGTCAGAG 59.078 41.667 0.00 0.00 0.00 3.35
3572 7973 4.921515 CCGTTCGAAAATACTTGTCAGAGA 59.078 41.667 0.00 0.00 0.00 3.10
3573 7974 5.404366 CCGTTCGAAAATACTTGTCAGAGAA 59.596 40.000 0.00 0.00 0.00 2.87
3574 7975 6.073980 CCGTTCGAAAATACTTGTCAGAGAAA 60.074 38.462 0.00 0.00 0.00 2.52
3575 7976 7.360101 CCGTTCGAAAATACTTGTCAGAGAAAT 60.360 37.037 0.00 0.00 0.00 2.17
3576 7977 7.475565 CGTTCGAAAATACTTGTCAGAGAAATG 59.524 37.037 0.00 0.00 0.00 2.32
3577 7978 6.831769 TCGAAAATACTTGTCAGAGAAATGC 58.168 36.000 0.00 0.00 0.00 3.56
3578 7979 6.650807 TCGAAAATACTTGTCAGAGAAATGCT 59.349 34.615 0.00 0.00 0.00 3.79
3579 7980 7.173218 TCGAAAATACTTGTCAGAGAAATGCTT 59.827 33.333 0.00 0.00 0.00 3.91
3580 7981 8.443160 CGAAAATACTTGTCAGAGAAATGCTTA 58.557 33.333 0.00 0.00 0.00 3.09
3586 7987 8.807667 ACTTGTCAGAGAAATGCTTAAAAATG 57.192 30.769 0.00 0.00 0.00 2.32
3587 7988 7.869429 ACTTGTCAGAGAAATGCTTAAAAATGG 59.131 33.333 0.00 0.00 0.00 3.16
3588 7989 7.523293 TGTCAGAGAAATGCTTAAAAATGGA 57.477 32.000 0.00 0.00 0.00 3.41
3589 7990 8.125978 TGTCAGAGAAATGCTTAAAAATGGAT 57.874 30.769 0.00 0.00 0.00 3.41
3590 7991 8.030692 TGTCAGAGAAATGCTTAAAAATGGATG 58.969 33.333 0.00 0.00 0.00 3.51
3591 7992 8.031277 GTCAGAGAAATGCTTAAAAATGGATGT 58.969 33.333 0.00 0.00 0.00 3.06
3592 7993 9.241919 TCAGAGAAATGCTTAAAAATGGATGTA 57.758 29.630 0.00 0.00 0.00 2.29
3601 8002 9.905713 TGCTTAAAAATGGATGTATCTAGAACT 57.094 29.630 0.00 0.00 0.00 3.01
3630 8031 6.865834 ATGTCTAGATACATCCATTCCTCC 57.134 41.667 0.00 0.00 35.08 4.30
3631 8032 4.767409 TGTCTAGATACATCCATTCCTCCG 59.233 45.833 0.00 0.00 0.00 4.63
3632 8033 5.010933 GTCTAGATACATCCATTCCTCCGA 58.989 45.833 0.00 0.00 0.00 4.55
3633 8034 5.010933 TCTAGATACATCCATTCCTCCGAC 58.989 45.833 0.00 0.00 0.00 4.79
3634 8035 3.576861 AGATACATCCATTCCTCCGACA 58.423 45.455 0.00 0.00 0.00 4.35
3635 8036 3.967326 AGATACATCCATTCCTCCGACAA 59.033 43.478 0.00 0.00 0.00 3.18
3636 8037 2.698855 ACATCCATTCCTCCGACAAG 57.301 50.000 0.00 0.00 0.00 3.16
3637 8038 1.909302 ACATCCATTCCTCCGACAAGT 59.091 47.619 0.00 0.00 0.00 3.16
3638 8039 3.104512 ACATCCATTCCTCCGACAAGTA 58.895 45.455 0.00 0.00 0.00 2.24
3639 8040 3.711704 ACATCCATTCCTCCGACAAGTAT 59.288 43.478 0.00 0.00 0.00 2.12
3640 8041 4.164221 ACATCCATTCCTCCGACAAGTATT 59.836 41.667 0.00 0.00 0.00 1.89
3641 8042 4.837093 TCCATTCCTCCGACAAGTATTT 57.163 40.909 0.00 0.00 0.00 1.40
3642 8043 4.766375 TCCATTCCTCCGACAAGTATTTC 58.234 43.478 0.00 0.00 0.00 2.17
3643 8044 3.877508 CCATTCCTCCGACAAGTATTTCC 59.122 47.826 0.00 0.00 0.00 3.13
3644 8045 2.953466 TCCTCCGACAAGTATTTCCG 57.047 50.000 0.00 0.00 0.00 4.30
3645 8046 1.479323 TCCTCCGACAAGTATTTCCGG 59.521 52.381 0.00 0.00 41.36 5.14
3646 8047 1.479323 CCTCCGACAAGTATTTCCGGA 59.521 52.381 0.00 0.00 45.74 5.14
3647 8048 2.537401 CTCCGACAAGTATTTCCGGAC 58.463 52.381 1.83 0.00 43.47 4.79
3648 8049 1.135315 TCCGACAAGTATTTCCGGACG 60.135 52.381 1.83 0.00 43.47 4.79
3649 8050 1.274596 CGACAAGTATTTCCGGACGG 58.725 55.000 1.83 3.96 0.00 4.79
3650 8051 1.135315 CGACAAGTATTTCCGGACGGA 60.135 52.381 1.83 9.76 43.52 4.69
3651 8052 2.537401 GACAAGTATTTCCGGACGGAG 58.463 52.381 13.64 3.15 46.06 4.63
3652 8053 1.206371 ACAAGTATTTCCGGACGGAGG 59.794 52.381 13.64 0.00 46.06 4.30
3653 8054 0.828677 AAGTATTTCCGGACGGAGGG 59.171 55.000 13.64 0.00 46.06 4.30
3654 8055 0.032813 AGTATTTCCGGACGGAGGGA 60.033 55.000 13.64 4.95 46.06 4.20
3655 8056 0.388294 GTATTTCCGGACGGAGGGAG 59.612 60.000 13.64 0.00 46.06 4.30
3656 8057 0.032813 TATTTCCGGACGGAGGGAGT 60.033 55.000 13.64 0.00 46.06 3.85
3657 8058 0.032813 ATTTCCGGACGGAGGGAGTA 60.033 55.000 13.64 0.00 46.06 2.59
3658 8059 0.032813 TTTCCGGACGGAGGGAGTAT 60.033 55.000 13.64 0.00 46.06 2.12
3659 8060 0.846015 TTCCGGACGGAGGGAGTATA 59.154 55.000 13.64 0.00 46.06 1.47
3660 8061 1.070604 TCCGGACGGAGGGAGTATAT 58.929 55.000 9.76 0.00 39.76 0.86
3661 8062 1.426598 TCCGGACGGAGGGAGTATATT 59.573 52.381 9.76 0.00 39.76 1.28
3662 8063 2.644299 TCCGGACGGAGGGAGTATATTA 59.356 50.000 9.76 0.00 39.76 0.98
3663 8064 2.751806 CCGGACGGAGGGAGTATATTAC 59.248 54.545 4.40 0.00 37.50 1.89
3664 8065 3.560882 CCGGACGGAGGGAGTATATTACT 60.561 52.174 4.40 0.00 38.62 2.24
3665 8066 4.323792 CCGGACGGAGGGAGTATATTACTA 60.324 50.000 4.40 0.00 36.89 1.82
3666 8067 4.874966 CGGACGGAGGGAGTATATTACTAG 59.125 50.000 0.00 0.00 39.59 2.57
3667 8068 4.639755 GGACGGAGGGAGTATATTACTAGC 59.360 50.000 0.00 0.00 39.59 3.42
3668 8069 4.598022 ACGGAGGGAGTATATTACTAGCC 58.402 47.826 0.00 0.00 39.59 3.93
3669 8070 3.952967 CGGAGGGAGTATATTACTAGCCC 59.047 52.174 0.00 0.00 41.09 5.19
3670 8071 3.952967 GGAGGGAGTATATTACTAGCCCG 59.047 52.174 0.00 0.00 43.90 6.13
3671 8072 3.363627 AGGGAGTATATTACTAGCCCGC 58.636 50.000 0.00 0.00 43.90 6.13
3672 8073 2.098770 GGGAGTATATTACTAGCCCGCG 59.901 54.545 0.00 0.00 39.59 6.46
3673 8074 2.751806 GGAGTATATTACTAGCCCGCGT 59.248 50.000 4.92 0.00 39.59 6.01
3674 8075 3.181502 GGAGTATATTACTAGCCCGCGTC 60.182 52.174 4.92 0.00 39.59 5.19
3675 8076 3.683802 AGTATATTACTAGCCCGCGTCT 58.316 45.455 4.92 4.16 37.23 4.18
3676 8077 3.688673 AGTATATTACTAGCCCGCGTCTC 59.311 47.826 4.92 0.00 37.23 3.36
3677 8078 1.971481 TATTACTAGCCCGCGTCTCA 58.029 50.000 4.92 0.00 0.00 3.27
3678 8079 1.329256 ATTACTAGCCCGCGTCTCAT 58.671 50.000 4.92 0.00 0.00 2.90
3679 8080 1.108776 TTACTAGCCCGCGTCTCATT 58.891 50.000 4.92 0.00 0.00 2.57
3680 8081 0.384309 TACTAGCCCGCGTCTCATTG 59.616 55.000 4.92 0.00 0.00 2.82
3681 8082 2.202878 TAGCCCGCGTCTCATTGC 60.203 61.111 4.92 0.00 0.00 3.56
3682 8083 3.733344 TAGCCCGCGTCTCATTGCC 62.733 63.158 4.92 0.00 0.00 4.52
3684 8085 4.776322 CCCGCGTCTCATTGCCCA 62.776 66.667 4.92 0.00 0.00 5.36
3685 8086 3.499737 CCGCGTCTCATTGCCCAC 61.500 66.667 4.92 0.00 0.00 4.61
3686 8087 3.853330 CGCGTCTCATTGCCCACG 61.853 66.667 0.00 0.00 35.32 4.94
3687 8088 2.434185 GCGTCTCATTGCCCACGA 60.434 61.111 0.00 0.00 34.06 4.35
3688 8089 2.032634 GCGTCTCATTGCCCACGAA 61.033 57.895 0.00 0.00 34.06 3.85
3888 8292 5.167845 GTGAACTGCAACTCCTTTTGAAAA 58.832 37.500 0.00 0.00 0.00 2.29
3895 8299 5.650266 TGCAACTCCTTTTGAAAACAGACTA 59.350 36.000 0.00 0.00 0.00 2.59
3939 8343 3.085952 ACCATCAAATGTACACCCTGG 57.914 47.619 0.00 4.04 0.00 4.45
4049 8795 2.622064 AACTGAACAAGTTCCGAGCT 57.378 45.000 10.19 0.00 46.60 4.09
4050 8796 2.622064 ACTGAACAAGTTCCGAGCTT 57.378 45.000 10.19 0.00 34.57 3.74
4051 8797 2.919228 ACTGAACAAGTTCCGAGCTTT 58.081 42.857 10.19 0.00 34.57 3.51
4052 8798 3.279434 ACTGAACAAGTTCCGAGCTTTT 58.721 40.909 10.19 0.00 34.57 2.27
4053 8799 3.694566 ACTGAACAAGTTCCGAGCTTTTT 59.305 39.130 10.19 0.00 34.57 1.94
4191 9977 3.259876 TCGTTTAGCTGGCTAGGAGAAAA 59.740 43.478 0.00 0.00 0.00 2.29
4279 10069 7.091443 AGGATAGAAGAAACAACAAGTAGTCG 58.909 38.462 0.00 0.00 0.00 4.18
4285 10075 5.673514 AGAAACAACAAGTAGTCGGGTTTA 58.326 37.500 0.00 0.00 32.54 2.01
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 0.905357 GGCCTCTAAGAAGTGCTGGA 59.095 55.000 0.00 0.00 0.00 3.86
1 2 0.615331 TGGCCTCTAAGAAGTGCTGG 59.385 55.000 3.32 0.00 0.00 4.85
2 3 1.002430 TGTGGCCTCTAAGAAGTGCTG 59.998 52.381 3.32 0.00 0.00 4.41
3 4 1.002544 GTGTGGCCTCTAAGAAGTGCT 59.997 52.381 3.32 0.00 0.00 4.40
17 18 0.804989 GTGGCTGTAGATTGTGTGGC 59.195 55.000 0.00 0.00 0.00 5.01
35 37 3.573110 AGAGCGATAAGGTATAAAGCGGT 59.427 43.478 0.00 0.00 0.00 5.68
38 40 5.808030 GGATGAGAGCGATAAGGTATAAAGC 59.192 44.000 0.00 0.00 0.00 3.51
50 1821 1.269309 GCTACAACGGATGAGAGCGAT 60.269 52.381 0.00 0.00 33.87 4.58
99 1870 0.029681 ACCCATGGAGCCTATGAGGT 60.030 55.000 15.22 0.00 37.80 3.85
134 1905 7.498570 AGAGTTCAGCTAATCCTCAATTTGATC 59.501 37.037 0.00 0.00 0.00 2.92
135 1906 7.344913 AGAGTTCAGCTAATCCTCAATTTGAT 58.655 34.615 0.00 0.00 0.00 2.57
136 1907 6.715280 AGAGTTCAGCTAATCCTCAATTTGA 58.285 36.000 0.00 0.00 0.00 2.69
137 1908 6.998968 AGAGTTCAGCTAATCCTCAATTTG 57.001 37.500 0.00 0.00 0.00 2.32
153 1924 5.482908 GAGGAACATGAAGCTTAGAGTTCA 58.517 41.667 25.72 11.44 37.64 3.18
160 1931 2.356125 GGCAGGAGGAACATGAAGCTTA 60.356 50.000 0.00 0.00 31.40 3.09
168 1939 2.586792 GCTCGGCAGGAGGAACAT 59.413 61.111 6.20 0.00 43.36 2.71
169 1940 3.706373 GGCTCGGCAGGAGGAACA 61.706 66.667 6.20 0.00 43.36 3.18
178 1949 2.519622 CCCTATCATGGGCTCGGCA 61.520 63.158 0.00 0.00 40.84 5.69
188 1959 7.069344 CCTTCCTTTTTATCAACCCCTATCAT 58.931 38.462 0.00 0.00 0.00 2.45
189 1960 6.218730 TCCTTCCTTTTTATCAACCCCTATCA 59.781 38.462 0.00 0.00 0.00 2.15
198 1970 4.457949 GCGGTTCTCCTTCCTTTTTATCAA 59.542 41.667 0.00 0.00 0.00 2.57
199 1971 4.007659 GCGGTTCTCCTTCCTTTTTATCA 58.992 43.478 0.00 0.00 0.00 2.15
205 1977 0.395312 TTCGCGGTTCTCCTTCCTTT 59.605 50.000 6.13 0.00 0.00 3.11
284 2481 1.080354 CCTCCACCTACCACCCTCA 59.920 63.158 0.00 0.00 0.00 3.86
314 3049 4.200283 CGCTCCCTGACTCGCCTC 62.200 72.222 0.00 0.00 0.00 4.70
445 3183 4.337264 AGGGGGATTTAGAAAGCACAAT 57.663 40.909 0.00 0.00 26.96 2.71
563 3306 2.198827 TGCACAATGGTAGGTCCTTG 57.801 50.000 0.00 0.00 37.07 3.61
579 3322 2.300956 TTCACCAATAAGGCCTTGCA 57.699 45.000 28.77 9.67 43.14 4.08
603 3346 7.775053 TGGAGGCACTTAGAAAAATAAACAT 57.225 32.000 0.00 0.00 41.55 2.71
627 3427 4.658901 CCCTGTACAATGGTAGGTCCTTAT 59.341 45.833 0.00 0.00 37.07 1.73
859 3698 5.491982 AGTATGTTTCAGATCCACAAGTCC 58.508 41.667 0.00 0.00 0.00 3.85
899 3744 1.045911 AGAGGCGAGGGGAGATTCAC 61.046 60.000 0.00 0.00 0.00 3.18
961 4072 3.068448 ACCAACAAATTAAACACGGGACC 59.932 43.478 0.00 0.00 0.00 4.46
971 4082 8.746052 TCTCTCTTCTTCAACCAACAAATTAA 57.254 30.769 0.00 0.00 0.00 1.40
972 4083 7.445402 CCTCTCTCTTCTTCAACCAACAAATTA 59.555 37.037 0.00 0.00 0.00 1.40
973 4084 6.264067 CCTCTCTCTTCTTCAACCAACAAATT 59.736 38.462 0.00 0.00 0.00 1.82
974 4085 5.767168 CCTCTCTCTTCTTCAACCAACAAAT 59.233 40.000 0.00 0.00 0.00 2.32
1031 4161 0.904649 ACTCATGACTCGGCAATGGA 59.095 50.000 0.00 0.00 0.00 3.41
1059 4189 7.873719 TGGAAACTCAAACAAGAGATAAACA 57.126 32.000 0.00 0.00 38.98 2.83
1060 4190 9.750125 AATTGGAAACTCAAACAAGAGATAAAC 57.250 29.630 0.00 0.00 38.98 2.01
1062 4192 9.748708 CAAATTGGAAACTCAAACAAGAGATAA 57.251 29.630 0.00 0.00 38.98 1.75
1063 4193 8.912988 ACAAATTGGAAACTCAAACAAGAGATA 58.087 29.630 0.00 0.00 38.98 1.98
1071 4228 5.295787 GGGGAAACAAATTGGAAACTCAAAC 59.704 40.000 0.00 0.00 0.00 2.93
1082 4239 4.141505 ACAAAAGGGAGGGGAAACAAATTG 60.142 41.667 0.00 0.00 0.00 2.32
1161 4401 1.596220 GCGAACGAACAAACCCTCAAC 60.596 52.381 0.00 0.00 0.00 3.18
1234 4476 1.749983 CGGAGGGAGGGAGTAGTACAC 60.750 61.905 2.52 0.00 0.00 2.90
1246 4488 2.256117 ACAAAAGTGAACGGAGGGAG 57.744 50.000 0.00 0.00 0.00 4.30
1247 4489 3.135167 ACTTACAAAAGTGAACGGAGGGA 59.865 43.478 0.00 0.00 44.40 4.20
1248 4490 3.473625 ACTTACAAAAGTGAACGGAGGG 58.526 45.455 0.00 0.00 44.40 4.30
1249 4491 3.183775 CGACTTACAAAAGTGAACGGAGG 59.816 47.826 0.00 0.00 46.09 4.30
1250 4492 3.800506 ACGACTTACAAAAGTGAACGGAG 59.199 43.478 0.00 0.00 46.09 4.63
1251 4493 3.784338 ACGACTTACAAAAGTGAACGGA 58.216 40.909 0.00 0.00 46.09 4.69
1252 4494 4.525411 AACGACTTACAAAAGTGAACGG 57.475 40.909 0.00 0.00 46.09 4.44
1253 4495 5.552807 TGAAACGACTTACAAAAGTGAACG 58.447 37.500 0.00 0.00 46.09 3.95
1254 4496 6.681599 GTCTGAAACGACTTACAAAAGTGAAC 59.318 38.462 0.00 0.00 46.09 3.18
1255 4497 6.369340 TGTCTGAAACGACTTACAAAAGTGAA 59.631 34.615 0.00 0.00 46.09 3.18
1256 4498 5.870433 TGTCTGAAACGACTTACAAAAGTGA 59.130 36.000 0.00 0.00 46.09 3.41
1257 4499 6.102006 TGTCTGAAACGACTTACAAAAGTG 57.898 37.500 0.00 0.00 46.09 3.16
1259 4501 6.682863 CACTTGTCTGAAACGACTTACAAAAG 59.317 38.462 0.00 0.00 38.77 2.27
1260 4502 6.369340 TCACTTGTCTGAAACGACTTACAAAA 59.631 34.615 0.00 0.00 35.00 2.44
1261 4503 5.870433 TCACTTGTCTGAAACGACTTACAAA 59.130 36.000 0.00 0.00 35.00 2.83
1262 4504 5.412640 TCACTTGTCTGAAACGACTTACAA 58.587 37.500 0.00 0.00 35.00 2.41
1263 4505 5.001237 TCACTTGTCTGAAACGACTTACA 57.999 39.130 0.00 0.00 35.00 2.41
1264 4506 5.961395 TTCACTTGTCTGAAACGACTTAC 57.039 39.130 0.00 0.00 35.00 2.34
1265 4507 6.971527 TTTTCACTTGTCTGAAACGACTTA 57.028 33.333 0.00 0.00 39.37 2.24
1266 4508 5.873179 TTTTCACTTGTCTGAAACGACTT 57.127 34.783 0.00 0.00 39.37 3.01
1267 4509 5.873179 TTTTTCACTTGTCTGAAACGACT 57.127 34.783 0.00 0.00 39.37 4.18
1268 4510 7.583040 GTCTATTTTTCACTTGTCTGAAACGAC 59.417 37.037 0.00 0.00 39.37 4.34
1269 4511 7.494625 AGTCTATTTTTCACTTGTCTGAAACGA 59.505 33.333 0.00 0.00 39.37 3.85
1270 4512 7.584123 CAGTCTATTTTTCACTTGTCTGAAACG 59.416 37.037 0.00 0.00 39.37 3.60
1271 4513 8.398665 ACAGTCTATTTTTCACTTGTCTGAAAC 58.601 33.333 0.00 0.00 39.37 2.78
1272 4514 8.506168 ACAGTCTATTTTTCACTTGTCTGAAA 57.494 30.769 0.00 0.00 38.18 2.69
1273 4515 7.987458 AGACAGTCTATTTTTCACTTGTCTGAA 59.013 33.333 0.00 0.00 32.28 3.02
1274 4516 7.439356 CAGACAGTCTATTTTTCACTTGTCTGA 59.561 37.037 20.63 0.00 42.01 3.27
1275 4517 7.439356 TCAGACAGTCTATTTTTCACTTGTCTG 59.561 37.037 19.69 19.69 41.52 3.51
1276 4518 7.500992 TCAGACAGTCTATTTTTCACTTGTCT 58.499 34.615 1.67 0.00 33.00 3.41
1277 4519 7.715265 TCAGACAGTCTATTTTTCACTTGTC 57.285 36.000 1.67 0.00 0.00 3.18
1278 4520 8.506168 TTTCAGACAGTCTATTTTTCACTTGT 57.494 30.769 1.67 0.00 0.00 3.16
1279 4521 9.956720 AATTTCAGACAGTCTATTTTTCACTTG 57.043 29.630 1.67 0.00 0.00 3.16
1288 4530 9.007901 CCTTGAAGAAATTTCAGACAGTCTATT 57.992 33.333 19.99 0.00 0.00 1.73
1289 4531 7.120432 GCCTTGAAGAAATTTCAGACAGTCTAT 59.880 37.037 19.99 0.00 0.00 1.98
1290 4532 6.428159 GCCTTGAAGAAATTTCAGACAGTCTA 59.572 38.462 19.99 4.21 0.00 2.59
1291 4533 5.240403 GCCTTGAAGAAATTTCAGACAGTCT 59.760 40.000 19.99 0.00 0.00 3.24
1292 4534 5.456265 GCCTTGAAGAAATTTCAGACAGTC 58.544 41.667 19.99 7.72 0.00 3.51
1293 4535 4.279420 GGCCTTGAAGAAATTTCAGACAGT 59.721 41.667 19.99 0.00 0.00 3.55
1294 4536 4.522022 AGGCCTTGAAGAAATTTCAGACAG 59.478 41.667 19.99 9.97 0.00 3.51
1295 4537 4.473444 AGGCCTTGAAGAAATTTCAGACA 58.527 39.130 19.99 12.95 0.00 3.41
1296 4538 5.459536 AAGGCCTTGAAGAAATTTCAGAC 57.540 39.130 19.73 10.74 0.00 3.51
1297 4539 8.877864 TTATAAGGCCTTGAAGAAATTTCAGA 57.122 30.769 28.77 2.42 0.00 3.27
1298 4540 9.927668 TTTTATAAGGCCTTGAAGAAATTTCAG 57.072 29.630 28.77 8.40 0.00 3.02
1299 4541 9.927668 CTTTTATAAGGCCTTGAAGAAATTTCA 57.072 29.630 28.77 3.15 0.00 2.69
1300 4542 9.929180 ACTTTTATAAGGCCTTGAAGAAATTTC 57.071 29.630 28.77 10.33 35.61 2.17
1301 4543 9.710900 CACTTTTATAAGGCCTTGAAGAAATTT 57.289 29.630 28.77 5.94 35.61 1.82
1302 4544 9.088987 TCACTTTTATAAGGCCTTGAAGAAATT 57.911 29.630 28.77 13.60 35.61 1.82
1303 4545 8.650143 TCACTTTTATAAGGCCTTGAAGAAAT 57.350 30.769 28.77 14.50 35.61 2.17
1304 4546 8.357402 GTTCACTTTTATAAGGCCTTGAAGAAA 58.643 33.333 28.77 15.54 35.61 2.52
1305 4547 7.308348 CGTTCACTTTTATAAGGCCTTGAAGAA 60.308 37.037 28.77 16.35 35.61 2.52
1306 4548 6.148811 CGTTCACTTTTATAAGGCCTTGAAGA 59.851 38.462 28.77 15.22 35.61 2.87
1307 4549 6.314784 CGTTCACTTTTATAAGGCCTTGAAG 58.685 40.000 28.77 24.09 35.61 3.02
1308 4550 5.182380 CCGTTCACTTTTATAAGGCCTTGAA 59.818 40.000 28.77 17.44 35.61 2.69
1309 4551 4.698304 CCGTTCACTTTTATAAGGCCTTGA 59.302 41.667 28.77 11.98 35.61 3.02
1310 4552 4.698304 TCCGTTCACTTTTATAAGGCCTTG 59.302 41.667 28.77 12.48 35.61 3.61
1311 4553 4.913784 TCCGTTCACTTTTATAAGGCCTT 58.086 39.130 24.18 24.18 35.61 4.35
1312 4554 4.514401 CTCCGTTCACTTTTATAAGGCCT 58.486 43.478 0.00 0.00 35.61 5.19
1313 4555 3.626217 CCTCCGTTCACTTTTATAAGGCC 59.374 47.826 0.00 0.00 35.61 5.19
1314 4556 4.259356 ACCTCCGTTCACTTTTATAAGGC 58.741 43.478 0.00 0.00 35.61 4.35
1315 4557 6.637657 ACTACCTCCGTTCACTTTTATAAGG 58.362 40.000 0.00 0.00 35.61 2.69
1316 4558 8.465201 ACTACTACCTCCGTTCACTTTTATAAG 58.535 37.037 0.00 0.00 37.40 1.73
1317 4559 8.353423 ACTACTACCTCCGTTCACTTTTATAA 57.647 34.615 0.00 0.00 0.00 0.98
1318 4560 7.944729 ACTACTACCTCCGTTCACTTTTATA 57.055 36.000 0.00 0.00 0.00 0.98
1319 4561 6.847421 ACTACTACCTCCGTTCACTTTTAT 57.153 37.500 0.00 0.00 0.00 1.40
1320 4562 7.759489 TTACTACTACCTCCGTTCACTTTTA 57.241 36.000 0.00 0.00 0.00 1.52
1321 4563 6.655078 TTACTACTACCTCCGTTCACTTTT 57.345 37.500 0.00 0.00 0.00 2.27
1322 4564 6.655078 TTTACTACTACCTCCGTTCACTTT 57.345 37.500 0.00 0.00 0.00 2.66
1323 4565 6.266330 ACTTTTACTACTACCTCCGTTCACTT 59.734 38.462 0.00 0.00 0.00 3.16
1324 4566 5.772169 ACTTTTACTACTACCTCCGTTCACT 59.228 40.000 0.00 0.00 0.00 3.41
1325 4567 6.018589 ACTTTTACTACTACCTCCGTTCAC 57.981 41.667 0.00 0.00 0.00 3.18
1326 4568 6.006449 AGACTTTTACTACTACCTCCGTTCA 58.994 40.000 0.00 0.00 0.00 3.18
1327 4569 6.150140 TGAGACTTTTACTACTACCTCCGTTC 59.850 42.308 0.00 0.00 0.00 3.95
1328 4570 6.006449 TGAGACTTTTACTACTACCTCCGTT 58.994 40.000 0.00 0.00 0.00 4.44
1329 4571 5.564550 TGAGACTTTTACTACTACCTCCGT 58.435 41.667 0.00 0.00 0.00 4.69
1330 4572 6.072286 TGTTGAGACTTTTACTACTACCTCCG 60.072 42.308 0.00 0.00 0.00 4.63
1331 4573 7.224522 TGTTGAGACTTTTACTACTACCTCC 57.775 40.000 0.00 0.00 0.00 4.30
1332 4574 9.356433 GAATGTTGAGACTTTTACTACTACCTC 57.644 37.037 0.00 0.00 0.00 3.85
1333 4575 8.867097 TGAATGTTGAGACTTTTACTACTACCT 58.133 33.333 0.00 0.00 0.00 3.08
1334 4576 9.141400 CTGAATGTTGAGACTTTTACTACTACC 57.859 37.037 0.00 0.00 0.00 3.18
1338 4580 8.589335 TGTCTGAATGTTGAGACTTTTACTAC 57.411 34.615 12.39 0.00 41.23 2.73
1368 4610 0.605050 TCAATAACTGCAGCCGCACA 60.605 50.000 15.27 0.00 45.36 4.57
1372 4614 1.725641 TCTGTCAATAACTGCAGCCG 58.274 50.000 15.27 0.00 32.44 5.52
1373 4615 3.503748 AGTTTCTGTCAATAACTGCAGCC 59.496 43.478 15.27 0.00 32.44 4.85
1374 4616 4.756084 AGTTTCTGTCAATAACTGCAGC 57.244 40.909 15.27 0.00 32.44 5.25
1378 4620 9.088512 GACCATACTAGTTTCTGTCAATAACTG 57.911 37.037 0.00 3.64 34.26 3.16
1380 4622 8.870879 GTGACCATACTAGTTTCTGTCAATAAC 58.129 37.037 0.00 0.00 33.54 1.89
1381 4623 8.812972 AGTGACCATACTAGTTTCTGTCAATAA 58.187 33.333 0.00 0.00 33.54 1.40
1382 4624 8.251026 CAGTGACCATACTAGTTTCTGTCAATA 58.749 37.037 0.00 0.00 33.54 1.90
1383 4625 7.099764 CAGTGACCATACTAGTTTCTGTCAAT 58.900 38.462 0.00 6.21 33.54 2.57
1384 4626 6.455647 CAGTGACCATACTAGTTTCTGTCAA 58.544 40.000 0.00 0.00 33.54 3.18
1385 4627 5.566826 GCAGTGACCATACTAGTTTCTGTCA 60.567 44.000 0.00 6.89 0.00 3.58
1386 4628 4.865365 GCAGTGACCATACTAGTTTCTGTC 59.135 45.833 0.00 4.27 0.00 3.51
1387 4629 4.283467 TGCAGTGACCATACTAGTTTCTGT 59.717 41.667 0.00 0.00 0.00 3.41
1388 4630 4.820897 TGCAGTGACCATACTAGTTTCTG 58.179 43.478 0.00 0.00 0.00 3.02
1389 4631 5.187772 TGATGCAGTGACCATACTAGTTTCT 59.812 40.000 0.00 0.00 0.00 2.52
1390 4632 5.419542 TGATGCAGTGACCATACTAGTTTC 58.580 41.667 0.00 0.00 0.00 2.78
1391 4633 5.420725 TGATGCAGTGACCATACTAGTTT 57.579 39.130 0.00 0.00 0.00 2.66
1392 4634 4.681781 GCTGATGCAGTGACCATACTAGTT 60.682 45.833 0.00 0.00 39.41 2.24
1393 4635 3.181471 GCTGATGCAGTGACCATACTAGT 60.181 47.826 0.00 0.00 39.41 2.57
1394 4636 3.069300 AGCTGATGCAGTGACCATACTAG 59.931 47.826 0.00 0.00 42.74 2.57
1395 4637 3.033909 AGCTGATGCAGTGACCATACTA 58.966 45.455 0.00 0.00 42.74 1.82
1396 4638 1.836166 AGCTGATGCAGTGACCATACT 59.164 47.619 0.00 0.00 42.74 2.12
1397 4639 1.938577 CAGCTGATGCAGTGACCATAC 59.061 52.381 8.42 0.00 42.74 2.39
1398 4640 2.320745 CAGCTGATGCAGTGACCATA 57.679 50.000 8.42 0.00 42.74 2.74
1399 4641 3.170360 CAGCTGATGCAGTGACCAT 57.830 52.632 8.42 0.00 42.74 3.55
1400 4642 4.707791 CAGCTGATGCAGTGACCA 57.292 55.556 8.42 0.00 42.74 4.02
1409 4651 4.190001 ACTCTGAATAAGTGCAGCTGATG 58.810 43.478 20.43 0.00 32.27 3.07
1411 4653 3.969287 ACTCTGAATAAGTGCAGCTGA 57.031 42.857 20.43 0.00 32.27 4.26
1413 4655 4.277515 TCAACTCTGAATAAGTGCAGCT 57.722 40.909 0.00 0.00 32.27 4.24
1472 5444 9.727627 GAGATAATATCTGTTTTCCTTGCTTTG 57.272 33.333 7.61 0.00 40.38 2.77
1486 5458 7.064847 GGCAAGAGCAAGATGAGATAATATCTG 59.935 40.741 7.61 0.00 44.61 2.90
1510 5482 8.959705 TGAATATCTATCTGATGATGATTGGC 57.040 34.615 0.00 0.00 36.65 4.52
1541 5513 3.213249 GCAGGCAGCAAGAATATATGC 57.787 47.619 0.00 0.99 44.79 3.14
1563 5535 6.212388 ACATAACATTGGGCATTTTAGGTGAA 59.788 34.615 0.00 0.00 0.00 3.18
1570 5542 5.487131 ACCCTAACATAACATTGGGCATTTT 59.513 36.000 0.00 0.00 38.23 1.82
1578 5550 7.915293 TGAGTTGTACCCTAACATAACATTG 57.085 36.000 0.00 0.00 0.00 2.82
1582 5554 7.384477 AGAGTTGAGTTGTACCCTAACATAAC 58.616 38.462 0.00 0.00 31.82 1.89
1583 5555 7.549147 AGAGTTGAGTTGTACCCTAACATAA 57.451 36.000 0.00 0.00 0.00 1.90
1586 5558 6.573680 GCATAGAGTTGAGTTGTACCCTAACA 60.574 42.308 0.00 0.00 0.00 2.41
1587 5559 5.811100 GCATAGAGTTGAGTTGTACCCTAAC 59.189 44.000 0.00 0.00 0.00 2.34
1597 5569 4.528596 AGTGTACAGGCATAGAGTTGAGTT 59.471 41.667 0.00 0.00 0.00 3.01
1601 5573 5.967088 AGTTAGTGTACAGGCATAGAGTTG 58.033 41.667 0.00 0.00 0.00 3.16
1619 5641 6.603997 ACAGGGAGACTCTGTGTAATAGTTAG 59.396 42.308 3.37 0.00 43.07 2.34
1622 5644 4.936802 ACAGGGAGACTCTGTGTAATAGT 58.063 43.478 3.37 0.00 43.07 2.12
1623 5645 4.950475 TGACAGGGAGACTCTGTGTAATAG 59.050 45.833 9.06 0.00 44.51 1.73
1624 5646 4.930696 TGACAGGGAGACTCTGTGTAATA 58.069 43.478 9.06 0.00 44.51 0.98
1625 5647 3.779444 TGACAGGGAGACTCTGTGTAAT 58.221 45.455 9.06 0.00 44.51 1.89
1626 5648 3.238788 TGACAGGGAGACTCTGTGTAA 57.761 47.619 9.06 0.00 44.51 2.41
1627 5649 2.971901 TGACAGGGAGACTCTGTGTA 57.028 50.000 9.06 0.00 44.51 2.90
1629 5651 4.037803 CAGATATGACAGGGAGACTCTGTG 59.962 50.000 9.06 2.96 44.51 3.66
1635 5657 5.536538 TGTATCACAGATATGACAGGGAGAC 59.463 44.000 0.00 0.00 0.00 3.36
1639 5661 6.586344 AGTTTGTATCACAGATATGACAGGG 58.414 40.000 0.00 0.00 0.00 4.45
1644 5666 8.641541 TGCATAGAGTTTGTATCACAGATATGA 58.358 33.333 0.00 0.00 0.00 2.15
1645 5667 8.822652 TGCATAGAGTTTGTATCACAGATATG 57.177 34.615 0.00 0.00 0.00 1.78
1646 5668 9.433153 CATGCATAGAGTTTGTATCACAGATAT 57.567 33.333 0.00 0.00 0.00 1.63
1648 5670 7.278135 ACATGCATAGAGTTTGTATCACAGAT 58.722 34.615 0.00 0.00 0.00 2.90
1649 5671 6.643388 ACATGCATAGAGTTTGTATCACAGA 58.357 36.000 0.00 0.00 0.00 3.41
1650 5672 6.915544 ACATGCATAGAGTTTGTATCACAG 57.084 37.500 0.00 0.00 0.00 3.66
1651 5673 7.277760 GTGTACATGCATAGAGTTTGTATCACA 59.722 37.037 0.00 0.00 32.02 3.58
1652 5674 7.492669 AGTGTACATGCATAGAGTTTGTATCAC 59.507 37.037 0.00 8.48 31.95 3.06
1653 5675 7.555965 AGTGTACATGCATAGAGTTTGTATCA 58.444 34.615 0.00 0.00 0.00 2.15
1655 5677 8.696374 ACTAGTGTACATGCATAGAGTTTGTAT 58.304 33.333 0.00 0.00 0.00 2.29
1656 5678 8.063200 ACTAGTGTACATGCATAGAGTTTGTA 57.937 34.615 0.00 0.00 0.00 2.41
1657 5679 6.936279 ACTAGTGTACATGCATAGAGTTTGT 58.064 36.000 0.00 0.00 0.00 2.83
1661 5683 9.350951 TGTAATACTAGTGTACATGCATAGAGT 57.649 33.333 14.15 0.00 0.00 3.24
1662 5684 9.613957 GTGTAATACTAGTGTACATGCATAGAG 57.386 37.037 18.73 0.00 30.87 2.43
1664 5686 9.399403 CTGTGTAATACTAGTGTACATGCATAG 57.601 37.037 18.73 7.17 30.87 2.23
1665 5687 9.127277 TCTGTGTAATACTAGTGTACATGCATA 57.873 33.333 18.73 8.02 30.87 3.14
1667 5689 7.399245 TCTGTGTAATACTAGTGTACATGCA 57.601 36.000 18.73 13.77 30.87 3.96
1668 5690 8.873215 AATCTGTGTAATACTAGTGTACATGC 57.127 34.615 18.73 11.00 30.87 4.06
1673 5695 9.582431 GCAAAGAATCTGTGTAATACTAGTGTA 57.418 33.333 5.39 0.00 0.00 2.90
1675 5697 8.598924 CAGCAAAGAATCTGTGTAATACTAGTG 58.401 37.037 5.39 0.00 0.00 2.74
1677 5699 7.493971 AGCAGCAAAGAATCTGTGTAATACTAG 59.506 37.037 1.99 0.00 33.09 2.57
1678 5700 7.331026 AGCAGCAAAGAATCTGTGTAATACTA 58.669 34.615 1.99 0.00 33.09 1.82
1680 5702 6.314896 AGAGCAGCAAAGAATCTGTGTAATAC 59.685 38.462 1.99 0.00 33.09 1.89
1681 5703 6.314648 CAGAGCAGCAAAGAATCTGTGTAATA 59.685 38.462 1.99 0.00 34.13 0.98
1682 5704 5.123502 CAGAGCAGCAAAGAATCTGTGTAAT 59.876 40.000 1.99 0.00 34.13 1.89
1683 5705 4.453478 CAGAGCAGCAAAGAATCTGTGTAA 59.547 41.667 1.99 0.00 34.13 2.41
1684 5706 3.999001 CAGAGCAGCAAAGAATCTGTGTA 59.001 43.478 1.99 0.00 34.13 2.90
1686 5708 2.812591 ACAGAGCAGCAAAGAATCTGTG 59.187 45.455 10.99 0.00 46.55 3.66
1687 5709 3.137446 ACAGAGCAGCAAAGAATCTGT 57.863 42.857 6.86 6.86 44.29 3.41
1711 5733 4.948341 TGAGCAACCACAAGTAGAGTAA 57.052 40.909 0.00 0.00 0.00 2.24
1722 5787 1.717194 CATTTGGCATGAGCAACCAC 58.283 50.000 0.00 0.00 44.61 4.16
1724 5789 2.758497 GCATTTGGCATGAGCAACC 58.242 52.632 0.00 0.00 44.61 3.77
1833 5902 2.210116 GGTGTGTAGTTGTCCAGTGTG 58.790 52.381 0.00 0.00 0.00 3.82
1884 5986 4.379143 GTGCGGACGGGCGTTTTC 62.379 66.667 0.00 0.00 35.06 2.29
1894 5996 1.295792 TTCTTCACTGTTGTGCGGAC 58.704 50.000 0.00 0.00 43.49 4.79
1926 6028 3.242867 TGTCTCCAAGGAGTTGTGATCT 58.757 45.455 15.36 0.00 42.49 2.75
1942 6044 1.153208 CAGCAGCATCCCCTGTCTC 60.153 63.158 0.00 0.00 35.28 3.36
2142 6507 6.070897 TGTTTGTGATGTGGTAAAGTGATG 57.929 37.500 0.00 0.00 0.00 3.07
2186 6551 7.228314 ACATACTACTTAACAGCAGTGAAGA 57.772 36.000 13.04 0.00 38.32 2.87
2202 6567 6.584185 AAAAACCCACCATCAACATACTAC 57.416 37.500 0.00 0.00 0.00 2.73
2346 6714 6.485648 TCTTCATGCATTATGGAGTTGAGATG 59.514 38.462 0.00 0.00 42.23 2.90
2444 6812 1.219393 GCAGCTAGCGGGAGTTTCT 59.781 57.895 16.82 0.00 0.00 2.52
2464 6832 4.261489 GCATGCTTCCATAACCAATCTCAG 60.261 45.833 11.37 0.00 0.00 3.35
2591 6959 2.925563 GTTGCTTCCACTATGCAAATGC 59.074 45.455 0.00 0.00 46.31 3.56
2592 6960 3.173599 CGTTGCTTCCACTATGCAAATG 58.826 45.455 0.00 0.00 46.31 2.32
2593 6961 2.164219 CCGTTGCTTCCACTATGCAAAT 59.836 45.455 0.00 0.00 46.31 2.32
2594 6962 1.539388 CCGTTGCTTCCACTATGCAAA 59.461 47.619 0.00 0.00 46.31 3.68
2595 6963 1.164411 CCGTTGCTTCCACTATGCAA 58.836 50.000 0.00 0.00 43.70 4.08
2662 7030 0.469494 AGCACTGTCATGTGACCACA 59.531 50.000 10.40 5.22 44.15 4.17
2664 7032 2.566724 TCATAGCACTGTCATGTGACCA 59.433 45.455 10.40 0.00 44.15 4.02
2665 7033 3.193263 CTCATAGCACTGTCATGTGACC 58.807 50.000 10.40 0.00 44.15 4.02
2666 7034 3.193263 CCTCATAGCACTGTCATGTGAC 58.807 50.000 6.21 6.21 44.97 3.67
2667 7035 2.833943 ACCTCATAGCACTGTCATGTGA 59.166 45.455 6.61 0.00 40.12 3.58
2668 7036 3.257469 ACCTCATAGCACTGTCATGTG 57.743 47.619 0.00 0.00 40.62 3.21
2669 7037 5.620738 AATACCTCATAGCACTGTCATGT 57.379 39.130 0.00 0.00 0.00 3.21
2670 7038 6.932356 AAAATACCTCATAGCACTGTCATG 57.068 37.500 0.00 0.00 0.00 3.07
2671 7039 7.495934 GTGTAAAATACCTCATAGCACTGTCAT 59.504 37.037 0.00 0.00 0.00 3.06
2672 7040 6.816640 GTGTAAAATACCTCATAGCACTGTCA 59.183 38.462 0.00 0.00 0.00 3.58
2673 7041 6.258068 GGTGTAAAATACCTCATAGCACTGTC 59.742 42.308 0.00 0.00 35.30 3.51
2674 7042 6.113411 GGTGTAAAATACCTCATAGCACTGT 58.887 40.000 0.00 0.00 35.30 3.55
2675 7043 5.527582 GGGTGTAAAATACCTCATAGCACTG 59.472 44.000 0.00 0.00 38.30 3.66
2679 7047 7.041303 GCTAAAGGGTGTAAAATACCTCATAGC 60.041 40.741 0.00 0.00 39.28 2.97
2683 7051 6.129414 TGCTAAAGGGTGTAAAATACCTCA 57.871 37.500 0.00 0.00 38.30 3.86
2715 7083 4.835284 TGATAGTATTGAACACAGGGCA 57.165 40.909 0.00 0.00 0.00 5.36
2717 7085 7.921786 TTCTTTGATAGTATTGAACACAGGG 57.078 36.000 0.00 0.00 0.00 4.45
2722 7090 9.793259 ACCTCTTTTCTTTGATAGTATTGAACA 57.207 29.630 0.00 0.00 0.00 3.18
2737 7106 6.429692 CCAACCAAAACAAAACCTCTTTTCTT 59.570 34.615 0.00 0.00 0.00 2.52
2826 7196 2.369860 TCCAGGATATGCTGCTTCGAAT 59.630 45.455 18.17 0.00 0.00 3.34
2881 7251 2.852495 TAAGGCCTCTGAAAGCGCCG 62.852 60.000 5.23 0.00 42.77 6.46
2917 7287 7.502226 TGGCTTTCATAAAGTCTTTTGAGAGAA 59.498 33.333 20.13 10.32 43.40 2.87
3014 7386 8.702163 ACAACAGAGATTAAAACAAAAACAGG 57.298 30.769 0.00 0.00 0.00 4.00
3018 7390 9.818796 GCAAAACAACAGAGATTAAAACAAAAA 57.181 25.926 0.00 0.00 0.00 1.94
3027 7399 5.181245 GCAGTAGGCAAAACAACAGAGATTA 59.819 40.000 0.00 0.00 43.97 1.75
3045 7417 4.141846 ACATCTCCATGGTACTTGCAGTAG 60.142 45.833 12.58 0.00 33.82 2.57
3106 7478 2.621668 CCTTTTCCATGGTTCCTCCTCC 60.622 54.545 12.58 0.00 37.07 4.30
3141 7513 1.135960 GAGAAGAAGCCATAGCCCCT 58.864 55.000 0.00 0.00 41.25 4.79
3279 7651 0.833287 CGGGTCTTGATCACCATCCT 59.167 55.000 0.00 0.00 35.35 3.24
3427 7822 9.098355 CATACACACAGCTATAATACAAGTTGT 57.902 33.333 14.05 14.05 37.61 3.32
3527 7928 9.828039 AACGGAGGGAGTACTTAATAATTTAAG 57.172 33.333 0.00 4.39 46.49 1.85
3543 7944 3.521947 AGTATTTTCGAACGGAGGGAG 57.478 47.619 0.00 0.00 0.00 4.30
3544 7945 3.007182 ACAAGTATTTTCGAACGGAGGGA 59.993 43.478 0.00 0.00 0.00 4.20
3545 7946 3.332034 ACAAGTATTTTCGAACGGAGGG 58.668 45.455 0.00 0.00 0.00 4.30
3546 7947 3.991773 TGACAAGTATTTTCGAACGGAGG 59.008 43.478 0.00 0.00 0.00 4.30
3547 7948 4.921515 TCTGACAAGTATTTTCGAACGGAG 59.078 41.667 0.00 0.00 0.00 4.63
3548 7949 4.873817 TCTGACAAGTATTTTCGAACGGA 58.126 39.130 0.00 0.00 0.00 4.69
3549 7950 4.921515 TCTCTGACAAGTATTTTCGAACGG 59.078 41.667 0.00 0.00 0.00 4.44
3550 7951 6.448053 TTCTCTGACAAGTATTTTCGAACG 57.552 37.500 0.00 0.00 0.00 3.95
3551 7952 7.269297 GCATTTCTCTGACAAGTATTTTCGAAC 59.731 37.037 0.00 0.00 0.00 3.95
3552 7953 7.173218 AGCATTTCTCTGACAAGTATTTTCGAA 59.827 33.333 0.00 0.00 0.00 3.71
3553 7954 6.650807 AGCATTTCTCTGACAAGTATTTTCGA 59.349 34.615 0.00 0.00 0.00 3.71
3554 7955 6.835914 AGCATTTCTCTGACAAGTATTTTCG 58.164 36.000 0.00 0.00 0.00 3.46
3560 7961 9.897744 CATTTTTAAGCATTTCTCTGACAAGTA 57.102 29.630 0.00 0.00 0.00 2.24
3561 7962 7.869429 CCATTTTTAAGCATTTCTCTGACAAGT 59.131 33.333 0.00 0.00 0.00 3.16
3562 7963 8.084073 TCCATTTTTAAGCATTTCTCTGACAAG 58.916 33.333 0.00 0.00 0.00 3.16
3563 7964 7.950512 TCCATTTTTAAGCATTTCTCTGACAA 58.049 30.769 0.00 0.00 0.00 3.18
3564 7965 7.523293 TCCATTTTTAAGCATTTCTCTGACA 57.477 32.000 0.00 0.00 0.00 3.58
3565 7966 8.031277 ACATCCATTTTTAAGCATTTCTCTGAC 58.969 33.333 0.00 0.00 0.00 3.51
3566 7967 8.125978 ACATCCATTTTTAAGCATTTCTCTGA 57.874 30.769 0.00 0.00 0.00 3.27
3575 7976 9.905713 AGTTCTAGATACATCCATTTTTAAGCA 57.094 29.630 0.00 0.00 0.00 3.91
3604 8005 8.986991 GGAGGAATGGATGTATCTAGACATATT 58.013 37.037 0.00 0.00 40.18 1.28
3605 8006 7.286546 CGGAGGAATGGATGTATCTAGACATAT 59.713 40.741 0.00 0.00 40.18 1.78
3606 8007 6.603599 CGGAGGAATGGATGTATCTAGACATA 59.396 42.308 0.00 0.00 40.18 2.29
3607 8008 5.420421 CGGAGGAATGGATGTATCTAGACAT 59.580 44.000 0.00 0.00 42.82 3.06
3608 8009 4.767409 CGGAGGAATGGATGTATCTAGACA 59.233 45.833 0.00 0.00 0.00 3.41
3609 8010 5.010933 TCGGAGGAATGGATGTATCTAGAC 58.989 45.833 0.00 0.00 0.00 2.59
3610 8011 5.010933 GTCGGAGGAATGGATGTATCTAGA 58.989 45.833 0.00 0.00 0.00 2.43
3611 8012 4.767409 TGTCGGAGGAATGGATGTATCTAG 59.233 45.833 0.00 0.00 0.00 2.43
3612 8013 4.736473 TGTCGGAGGAATGGATGTATCTA 58.264 43.478 0.00 0.00 0.00 1.98
3613 8014 3.576861 TGTCGGAGGAATGGATGTATCT 58.423 45.455 0.00 0.00 0.00 1.98
3614 8015 4.202264 ACTTGTCGGAGGAATGGATGTATC 60.202 45.833 0.00 0.00 0.00 2.24
3615 8016 3.711704 ACTTGTCGGAGGAATGGATGTAT 59.288 43.478 0.00 0.00 0.00 2.29
3616 8017 3.104512 ACTTGTCGGAGGAATGGATGTA 58.895 45.455 0.00 0.00 0.00 2.29
3617 8018 1.909302 ACTTGTCGGAGGAATGGATGT 59.091 47.619 0.00 0.00 0.00 3.06
3618 8019 2.698855 ACTTGTCGGAGGAATGGATG 57.301 50.000 0.00 0.00 0.00 3.51
3619 8020 5.368989 GAAATACTTGTCGGAGGAATGGAT 58.631 41.667 0.00 0.00 0.00 3.41
3620 8021 4.383770 GGAAATACTTGTCGGAGGAATGGA 60.384 45.833 0.00 0.00 0.00 3.41
3621 8022 3.877508 GGAAATACTTGTCGGAGGAATGG 59.122 47.826 0.00 0.00 0.00 3.16
3622 8023 3.555956 CGGAAATACTTGTCGGAGGAATG 59.444 47.826 0.00 0.00 0.00 2.67
3623 8024 3.431766 CCGGAAATACTTGTCGGAGGAAT 60.432 47.826 0.00 0.00 42.94 3.01
3624 8025 2.093869 CCGGAAATACTTGTCGGAGGAA 60.094 50.000 0.00 0.00 42.94 3.36
3625 8026 1.479323 CCGGAAATACTTGTCGGAGGA 59.521 52.381 0.00 0.00 42.94 3.71
3626 8027 1.479323 TCCGGAAATACTTGTCGGAGG 59.521 52.381 0.00 0.00 43.84 4.30
3627 8028 2.953466 TCCGGAAATACTTGTCGGAG 57.047 50.000 0.00 0.00 43.84 4.63
3628 8029 1.135315 CGTCCGGAAATACTTGTCGGA 60.135 52.381 5.23 0.00 46.06 4.55
3629 8030 1.274596 CGTCCGGAAATACTTGTCGG 58.725 55.000 5.23 0.00 41.80 4.79
3630 8031 1.135315 TCCGTCCGGAAATACTTGTCG 60.135 52.381 5.23 1.25 42.05 4.35
3631 8032 2.537401 CTCCGTCCGGAAATACTTGTC 58.463 52.381 5.23 0.00 44.66 3.18
3632 8033 1.206371 CCTCCGTCCGGAAATACTTGT 59.794 52.381 5.23 0.00 44.66 3.16
3633 8034 1.472728 CCCTCCGTCCGGAAATACTTG 60.473 57.143 5.23 0.00 44.66 3.16
3634 8035 0.828677 CCCTCCGTCCGGAAATACTT 59.171 55.000 5.23 0.00 44.66 2.24
3635 8036 0.032813 TCCCTCCGTCCGGAAATACT 60.033 55.000 5.23 0.00 44.66 2.12
3636 8037 0.388294 CTCCCTCCGTCCGGAAATAC 59.612 60.000 5.23 0.00 44.66 1.89
3637 8038 0.032813 ACTCCCTCCGTCCGGAAATA 60.033 55.000 5.23 0.00 44.66 1.40
3638 8039 0.032813 TACTCCCTCCGTCCGGAAAT 60.033 55.000 5.23 0.00 44.66 2.17
3639 8040 0.032813 ATACTCCCTCCGTCCGGAAA 60.033 55.000 5.23 0.00 44.66 3.13
3640 8041 0.846015 TATACTCCCTCCGTCCGGAA 59.154 55.000 5.23 0.00 44.66 4.30
3641 8042 1.070604 ATATACTCCCTCCGTCCGGA 58.929 55.000 0.00 0.00 42.90 5.14
3642 8043 1.920610 AATATACTCCCTCCGTCCGG 58.079 55.000 0.00 0.00 0.00 5.14
3643 8044 3.683802 AGTAATATACTCCCTCCGTCCG 58.316 50.000 0.00 0.00 32.47 4.79
3644 8045 4.639755 GCTAGTAATATACTCCCTCCGTCC 59.360 50.000 0.00 0.00 40.14 4.79
3645 8046 4.639755 GGCTAGTAATATACTCCCTCCGTC 59.360 50.000 0.00 0.00 40.14 4.79
3646 8047 4.569440 GGGCTAGTAATATACTCCCTCCGT 60.569 50.000 6.93 0.00 38.92 4.69
3647 8048 3.952967 GGGCTAGTAATATACTCCCTCCG 59.047 52.174 6.93 0.00 38.92 4.63
3648 8049 3.952967 CGGGCTAGTAATATACTCCCTCC 59.047 52.174 10.76 2.59 39.50 4.30
3649 8050 3.380954 GCGGGCTAGTAATATACTCCCTC 59.619 52.174 10.76 2.23 39.50 4.30
3650 8051 3.363627 GCGGGCTAGTAATATACTCCCT 58.636 50.000 10.76 0.00 39.50 4.20
3651 8052 2.098770 CGCGGGCTAGTAATATACTCCC 59.901 54.545 0.00 4.84 38.72 4.30
3652 8053 2.751806 ACGCGGGCTAGTAATATACTCC 59.248 50.000 12.47 0.00 40.14 3.85
3653 8054 3.688673 AGACGCGGGCTAGTAATATACTC 59.311 47.826 12.47 0.00 40.14 2.59
3654 8055 3.683802 AGACGCGGGCTAGTAATATACT 58.316 45.455 12.47 0.00 42.68 2.12
3655 8056 3.438087 TGAGACGCGGGCTAGTAATATAC 59.562 47.826 12.47 0.00 0.00 1.47
3656 8057 3.678289 TGAGACGCGGGCTAGTAATATA 58.322 45.455 12.47 0.00 0.00 0.86
3657 8058 2.511659 TGAGACGCGGGCTAGTAATAT 58.488 47.619 12.47 0.00 0.00 1.28
3658 8059 1.971481 TGAGACGCGGGCTAGTAATA 58.029 50.000 12.47 0.00 0.00 0.98
3659 8060 1.329256 ATGAGACGCGGGCTAGTAAT 58.671 50.000 12.47 0.00 0.00 1.89
3660 8061 1.108776 AATGAGACGCGGGCTAGTAA 58.891 50.000 12.47 0.00 0.00 2.24
3661 8062 0.384309 CAATGAGACGCGGGCTAGTA 59.616 55.000 12.47 0.00 0.00 1.82
3662 8063 1.141881 CAATGAGACGCGGGCTAGT 59.858 57.895 12.47 0.00 0.00 2.57
3663 8064 2.240500 GCAATGAGACGCGGGCTAG 61.241 63.158 12.47 0.05 0.00 3.42
3664 8065 2.202878 GCAATGAGACGCGGGCTA 60.203 61.111 12.47 0.00 0.00 3.93
3667 8068 4.776322 TGGGCAATGAGACGCGGG 62.776 66.667 12.47 0.00 0.00 6.13
3668 8069 3.499737 GTGGGCAATGAGACGCGG 61.500 66.667 12.47 0.00 0.00 6.46
3669 8070 3.853330 CGTGGGCAATGAGACGCG 61.853 66.667 3.53 3.53 0.00 6.01
3670 8071 1.369091 ATTCGTGGGCAATGAGACGC 61.369 55.000 0.00 0.00 0.00 5.19
3671 8072 1.934589 TATTCGTGGGCAATGAGACG 58.065 50.000 0.00 0.00 0.00 4.18
3672 8073 6.038271 ACTTTATTATTCGTGGGCAATGAGAC 59.962 38.462 0.00 0.00 0.00 3.36
3673 8074 6.038161 CACTTTATTATTCGTGGGCAATGAGA 59.962 38.462 0.00 0.00 0.00 3.27
3674 8075 6.201517 CACTTTATTATTCGTGGGCAATGAG 58.798 40.000 0.00 0.00 0.00 2.90
3675 8076 5.067153 CCACTTTATTATTCGTGGGCAATGA 59.933 40.000 0.00 0.00 42.40 2.57
3676 8077 5.280945 CCACTTTATTATTCGTGGGCAATG 58.719 41.667 0.00 0.00 42.40 2.82
3677 8078 5.514274 CCACTTTATTATTCGTGGGCAAT 57.486 39.130 0.00 0.00 42.40 3.56
3678 8079 4.974368 CCACTTTATTATTCGTGGGCAA 57.026 40.909 0.00 0.00 42.40 4.52
3683 8084 8.612619 AGATTAAGCACCACTTTATTATTCGTG 58.387 33.333 0.00 0.00 39.97 4.35
3684 8085 8.732746 AGATTAAGCACCACTTTATTATTCGT 57.267 30.769 0.00 0.00 39.97 3.85
3685 8086 9.438291 CAAGATTAAGCACCACTTTATTATTCG 57.562 33.333 0.00 0.00 39.97 3.34
3786 8187 2.171209 CTGCTGATGTCGGTGGGTGA 62.171 60.000 0.00 0.00 0.00 4.02
3888 8292 7.398024 AGCATTAGTCTGGAAATTTAGTCTGT 58.602 34.615 0.00 0.00 0.00 3.41
3895 8299 8.470002 GGTAAATGAGCATTAGTCTGGAAATTT 58.530 33.333 0.00 0.00 0.00 1.82
3939 8343 4.080969 CAGAAAGCTGCAGTTTCAGATC 57.919 45.455 27.97 18.62 36.53 2.75
3971 8375 3.845781 AGCTCTGAACTTGTTCAGGAA 57.154 42.857 30.92 18.58 46.31 3.36
3972 8376 3.845781 AAGCTCTGAACTTGTTCAGGA 57.154 42.857 30.92 20.89 46.31 3.86
4021 8767 7.763356 TCGGAACTTGTTCAGTTTCAAAAATA 58.237 30.769 14.38 0.00 46.53 1.40
4022 8768 6.626302 TCGGAACTTGTTCAGTTTCAAAAAT 58.374 32.000 14.38 0.00 46.53 1.82
4023 8769 6.015027 TCGGAACTTGTTCAGTTTCAAAAA 57.985 33.333 14.38 0.00 46.53 1.94
4024 8770 5.630661 TCGGAACTTGTTCAGTTTCAAAA 57.369 34.783 14.38 0.00 46.53 2.44
4025 8771 4.438200 GCTCGGAACTTGTTCAGTTTCAAA 60.438 41.667 14.38 0.00 46.53 2.69
4026 8772 3.064820 GCTCGGAACTTGTTCAGTTTCAA 59.935 43.478 14.38 0.00 46.53 2.69
4027 8773 2.612212 GCTCGGAACTTGTTCAGTTTCA 59.388 45.455 14.38 0.00 46.53 2.69
4028 8774 2.872858 AGCTCGGAACTTGTTCAGTTTC 59.127 45.455 14.38 5.55 46.53 2.78
4029 8775 2.919228 AGCTCGGAACTTGTTCAGTTT 58.081 42.857 14.38 0.49 46.53 2.66
4031 8777 2.622064 AAGCTCGGAACTTGTTCAGT 57.378 45.000 14.38 0.00 37.30 3.41
4032 8778 3.971032 AAAAGCTCGGAACTTGTTCAG 57.029 42.857 14.38 10.79 0.00 3.02
4082 8828 9.787532 CTCTGAACTTGTTCAGTTTCAAAAATA 57.212 29.630 30.49 14.70 46.53 1.40
4083 8829 7.276438 GCTCTGAACTTGTTCAGTTTCAAAAAT 59.724 33.333 30.49 0.00 46.53 1.82
4084 8830 6.586082 GCTCTGAACTTGTTCAGTTTCAAAAA 59.414 34.615 30.49 15.75 46.53 1.94
4085 8831 6.071952 AGCTCTGAACTTGTTCAGTTTCAAAA 60.072 34.615 30.49 16.29 46.53 2.44
4086 8832 5.415701 AGCTCTGAACTTGTTCAGTTTCAAA 59.584 36.000 30.49 16.82 46.53 2.69
4087 8833 4.943705 AGCTCTGAACTTGTTCAGTTTCAA 59.056 37.500 30.49 17.35 46.53 2.69
4088 8834 4.517285 AGCTCTGAACTTGTTCAGTTTCA 58.483 39.130 30.49 17.62 46.53 2.69
4089 8835 5.491635 AAGCTCTGAACTTGTTCAGTTTC 57.508 39.130 30.49 22.73 46.53 2.78
4090 8836 5.904362 AAAGCTCTGAACTTGTTCAGTTT 57.096 34.783 30.49 23.58 46.53 2.66
4092 8838 5.904362 AAAAAGCTCTGAACTTGTTCAGT 57.096 34.783 30.49 16.95 46.37 3.41
4142 8888 9.787532 CTCTGAACTTGTTCAGTTTCAAAAATA 57.212 29.630 30.49 14.70 46.53 1.40
4143 8889 8.306761 ACTCTGAACTTGTTCAGTTTCAAAAAT 58.693 29.630 30.49 8.24 46.53 1.82
4171 9957 3.942115 CCTTTTCTCCTAGCCAGCTAAAC 59.058 47.826 0.34 0.00 0.00 2.01
4191 9977 8.363761 AGCTACAATACAAGTTAGAGTTACCT 57.636 34.615 0.00 0.00 0.00 3.08


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.