Multiple sequence alignment - TraesCS2B01G617500

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G617500 chr2B 100.000 4641 0 0 1 4641 794044776 794049416 0.000000e+00 8571.0
1 TraesCS2B01G617500 chr2B 78.272 382 50 18 3541 3918 791477818 791477466 1.010000e-51 215.0
2 TraesCS2B01G617500 chr2B 88.591 149 12 4 2018 2166 794002915 794003058 4.770000e-40 176.0
3 TraesCS2B01G617500 chr2A 87.830 2005 142 49 2297 4235 761251166 761249198 0.000000e+00 2257.0
4 TraesCS2B01G617500 chr2A 83.311 737 62 29 938 1667 761252082 761251400 1.420000e-174 623.0
5 TraesCS2B01G617500 chr2A 88.102 353 19 10 4306 4641 761248933 761248587 9.360000e-107 398.0
6 TraesCS2B01G617500 chr2A 97.143 210 5 1 1 209 761253162 761252953 2.050000e-93 353.0
7 TraesCS2B01G617500 chr2A 92.140 229 11 2 220 444 761252472 761252247 2.700000e-82 316.0
8 TraesCS2B01G617500 chr2A 92.500 160 10 1 735 894 761252236 761252079 1.300000e-55 228.0
9 TraesCS2B01G617500 chr2A 80.667 300 36 6 3504 3794 769498282 769498568 3.640000e-51 213.0
10 TraesCS2B01G617500 chr2A 84.746 177 18 6 2018 2191 761281709 761281539 7.990000e-38 169.0
11 TraesCS2B01G617500 chr2A 96.491 57 2 0 4237 4293 761249034 761248978 1.370000e-15 95.3
12 TraesCS2B01G617500 chr2D 89.293 990 56 24 2313 3278 635948174 635949137 0.000000e+00 1195.0
13 TraesCS2B01G617500 chr2D 89.074 842 55 20 3823 4641 635949562 635950389 0.000000e+00 1011.0
14 TraesCS2B01G617500 chr2D 90.193 622 52 8 220 837 635945371 635945987 0.000000e+00 802.0
15 TraesCS2B01G617500 chr2D 85.084 771 41 30 956 1677 635946275 635947020 0.000000e+00 719.0
16 TraesCS2B01G617500 chr2D 95.000 260 11 1 3541 3798 635949308 635949567 1.550000e-109 407.0
17 TraesCS2B01G617500 chr2D 80.996 542 46 25 2321 2854 644361795 644362287 1.220000e-100 377.0
18 TraesCS2B01G617500 chr2D 88.158 152 11 1 3537 3681 644362565 644362716 1.720000e-39 174.0
19 TraesCS2B01G617500 chr2D 90.816 98 7 1 1701 1796 635947113 635947210 3.770000e-26 130.0
20 TraesCS2B01G617500 chr6D 87.283 519 44 14 3784 4293 156193597 156193092 1.450000e-159 573.0
21 TraesCS2B01G617500 chr7D 82.889 637 68 19 2225 2854 583108080 583107478 6.840000e-148 534.0
22 TraesCS2B01G617500 chr7D 83.371 445 48 15 3536 3970 583106926 583106498 5.630000e-104 388.0
23 TraesCS2B01G617500 chr7D 88.316 291 16 3 1000 1278 583108988 583108704 2.680000e-87 333.0
24 TraesCS2B01G617500 chr7D 91.623 191 14 2 1794 1983 561004265 561004076 3.560000e-66 263.0
25 TraesCS2B01G617500 chr7D 83.333 144 17 5 2031 2171 583108199 583108060 4.870000e-25 126.0
26 TraesCS2B01G617500 chr7A 82.915 638 66 20 2225 2854 674875471 674874869 6.840000e-148 534.0
27 TraesCS2B01G617500 chr7A 87.973 291 17 3 1000 1278 674876807 674876523 1.250000e-85 327.0
28 TraesCS2B01G617500 chr1B 87.692 390 23 9 2302 2684 42582848 42583219 9.230000e-117 431.0
29 TraesCS2B01G617500 chr1B 97.006 167 5 0 1791 1957 520095597 520095763 9.830000e-72 281.0
30 TraesCS2B01G617500 chr1B 94.318 176 9 1 1784 1958 520401081 520401256 7.650000e-68 268.0
31 TraesCS2B01G617500 chr7B 88.966 290 13 4 1000 1277 650667641 650667359 1.600000e-89 340.0
32 TraesCS2B01G617500 chr7B 96.386 166 6 0 1792 1957 640232938 640233103 1.650000e-69 274.0
33 TraesCS2B01G617500 chr7B 91.304 69 5 1 3765 3832 65396985 65396917 4.940000e-15 93.5
34 TraesCS2B01G617500 chr1D 83.740 369 39 9 2465 2831 490027958 490027609 3.460000e-86 329.0
35 TraesCS2B01G617500 chr1D 95.312 64 3 0 4230 4293 24992119 24992182 8.220000e-18 102.0
36 TraesCS2B01G617500 chr1D 96.552 58 1 1 3765 3821 24992023 24992080 1.370000e-15 95.3
37 TraesCS2B01G617500 chr1D 76.056 213 27 13 1963 2171 490033530 490033338 6.400000e-14 89.8
38 TraesCS2B01G617500 chr6B 97.619 168 4 0 1790 1957 567476667 567476500 5.880000e-74 289.0
39 TraesCS2B01G617500 chr6B 96.429 168 5 1 1790 1957 33088345 33088511 4.570000e-70 276.0
40 TraesCS2B01G617500 chr5B 97.590 166 4 0 1793 1958 163251618 163251453 7.600000e-73 285.0
41 TraesCS2B01G617500 chr4B 95.833 168 6 1 1794 1961 564660954 564660788 2.130000e-68 270.0
42 TraesCS2B01G617500 chr3B 94.798 173 8 1 1794 1966 187333976 187334147 7.650000e-68 268.0
43 TraesCS2B01G617500 chr3D 96.875 64 2 0 4230 4293 535158816 535158753 1.770000e-19 108.0
44 TraesCS2B01G617500 chr3D 91.304 69 5 1 3765 3832 25846557 25846489 4.940000e-15 93.5
45 TraesCS2B01G617500 chr5D 95.312 64 3 0 4230 4293 69455614 69455551 8.220000e-18 102.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G617500 chr2B 794044776 794049416 4640 False 8571.000000 8571 100.000000 1 4641 1 chr2B.!!$F2 4640
1 TraesCS2B01G617500 chr2A 761248587 761253162 4575 True 610.042857 2257 91.073857 1 4641 7 chr2A.!!$R2 4640
2 TraesCS2B01G617500 chr2D 635945371 635950389 5018 False 710.666667 1195 89.910000 220 4641 6 chr2D.!!$F1 4421
3 TraesCS2B01G617500 chr2D 644361795 644362716 921 False 275.500000 377 84.577000 2321 3681 2 chr2D.!!$F2 1360
4 TraesCS2B01G617500 chr6D 156193092 156193597 505 True 573.000000 573 87.283000 3784 4293 1 chr6D.!!$R1 509
5 TraesCS2B01G617500 chr7D 583106498 583108988 2490 True 345.250000 534 84.477250 1000 3970 4 chr7D.!!$R2 2970
6 TraesCS2B01G617500 chr7A 674874869 674876807 1938 True 430.500000 534 85.444000 1000 2854 2 chr7A.!!$R1 1854

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
603 1086 0.243636 GTGCTCCCAAATTTCCACCG 59.756 55.0 0.00 0.0 0.0 4.94 F
1771 2961 0.178998 CATCCCCCTCTGCTGATTGG 60.179 60.0 0.00 0.0 0.0 3.16 F
2183 3404 0.037975 CAAAGGCAATGCTGACCCAC 60.038 55.0 4.82 0.0 0.0 4.61 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2136 3357 0.030773 GCATACGTCGATCAGCAGGA 59.969 55.0 0.0 0.0 0.00 3.86 R
2830 4792 1.434188 TGGGAGTGGATGTGTTGTCT 58.566 50.0 0.0 0.0 0.00 3.41 R
3838 6043 0.401738 CCAGGGGTGAGTGACAACAT 59.598 55.0 0.0 0.0 38.06 2.71 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
71 72 2.122564 GCTTGAAGACTTGCTTTGTGC 58.877 47.619 0.00 0.00 36.83 4.57
135 137 1.153549 GAAGGGTACTGCTGCTCCG 60.154 63.158 0.00 0.00 0.00 4.63
209 211 0.964700 CCATCATCGAGCTCTAGGCA 59.035 55.000 12.85 0.00 44.79 4.75
210 212 1.549620 CCATCATCGAGCTCTAGGCAT 59.450 52.381 12.85 0.00 44.79 4.40
212 214 3.194329 CCATCATCGAGCTCTAGGCATAA 59.806 47.826 12.85 0.00 44.79 1.90
214 216 3.491342 TCATCGAGCTCTAGGCATAAGT 58.509 45.455 12.85 0.00 44.79 2.24
215 217 3.891977 TCATCGAGCTCTAGGCATAAGTT 59.108 43.478 12.85 0.00 44.79 2.66
216 218 3.717400 TCGAGCTCTAGGCATAAGTTG 57.283 47.619 12.85 0.00 44.79 3.16
217 219 3.024547 TCGAGCTCTAGGCATAAGTTGT 58.975 45.455 12.85 0.00 44.79 3.32
218 220 3.447586 TCGAGCTCTAGGCATAAGTTGTT 59.552 43.478 12.85 0.00 44.79 2.83
317 794 3.433306 AGCAGGGCATAAGTTGTTACA 57.567 42.857 0.00 0.00 0.00 2.41
338 815 4.096003 CCATGACGGCCCGAACCT 62.096 66.667 11.71 0.00 0.00 3.50
355 832 2.841988 TTGGCAACCCCCTTGTGC 60.842 61.111 0.00 0.00 31.73 4.57
379 856 4.338795 ACTCCCTTCTGATACTTCTGGA 57.661 45.455 0.00 0.00 0.00 3.86
415 892 2.328319 ACCGAGGGTACTGGTTGTTTA 58.672 47.619 0.00 0.00 32.11 2.01
431 908 5.626955 GGTTGTTTACCGTATCGTCTATAGC 59.373 44.000 0.00 0.00 37.12 2.97
468 951 1.810030 GGCGTGCCTAGGTTTCTCG 60.810 63.158 11.31 7.73 0.00 4.04
476 959 2.159028 GCCTAGGTTTCTCGAGAGCAAT 60.159 50.000 15.94 6.39 0.00 3.56
478 961 2.393271 AGGTTTCTCGAGAGCAATGG 57.607 50.000 15.94 0.00 0.00 3.16
481 964 0.392998 TTTCTCGAGAGCAATGGCCC 60.393 55.000 15.94 0.00 42.56 5.80
491 974 1.079197 CAATGGCCCGCCCTTTTTC 60.079 57.895 0.00 0.00 34.56 2.29
492 975 1.229177 AATGGCCCGCCCTTTTTCT 60.229 52.632 0.00 0.00 34.56 2.52
495 978 3.068691 GCCCGCCCTTTTTCTCCC 61.069 66.667 0.00 0.00 0.00 4.30
496 979 2.750237 CCCGCCCTTTTTCTCCCG 60.750 66.667 0.00 0.00 0.00 5.14
497 980 2.349755 CCGCCCTTTTTCTCCCGA 59.650 61.111 0.00 0.00 0.00 5.14
498 981 1.745489 CCGCCCTTTTTCTCCCGAG 60.745 63.158 0.00 0.00 0.00 4.63
521 1004 3.109619 GCAGACTCAAGTGCTACGTATC 58.890 50.000 0.00 0.00 36.71 2.24
536 1019 2.031807 ACGTATCGACAATGACTCGAGG 59.968 50.000 18.41 0.17 43.11 4.63
537 1020 2.287103 CGTATCGACAATGACTCGAGGA 59.713 50.000 18.41 2.77 43.11 3.71
548 1031 7.162082 ACAATGACTCGAGGAGTAAATTTTCT 58.838 34.615 18.41 0.00 43.53 2.52
562 1045 7.945134 AGTAAATTTTCTCTGCTTTGTGTGAT 58.055 30.769 0.00 0.00 0.00 3.06
587 1070 0.249447 GGCCCAACAAACAAGAGTGC 60.249 55.000 0.00 0.00 0.00 4.40
591 1074 1.338020 CCAACAAACAAGAGTGCTCCC 59.662 52.381 0.00 0.00 0.00 4.30
602 1085 1.546029 GAGTGCTCCCAAATTTCCACC 59.454 52.381 0.00 0.00 0.00 4.61
603 1086 0.243636 GTGCTCCCAAATTTCCACCG 59.756 55.000 0.00 0.00 0.00 4.94
641 1124 2.543653 GCACATTTAGCCCAATTAGCGG 60.544 50.000 0.00 0.00 34.64 5.52
677 1160 7.012421 GGATAAGACATAAGACAACCATCCAAC 59.988 40.741 0.00 0.00 0.00 3.77
678 1161 4.589908 AGACATAAGACAACCATCCAACC 58.410 43.478 0.00 0.00 0.00 3.77
686 1169 1.123928 AACCATCCAACCGCCAAAAA 58.876 45.000 0.00 0.00 0.00 1.94
694 1177 0.885596 AACCGCCAAAAACGATCGGA 60.886 50.000 20.98 0.00 42.43 4.55
700 1183 2.418628 GCCAAAAACGATCGGATTCTGA 59.581 45.455 20.98 0.00 0.00 3.27
702 1185 3.435327 CCAAAAACGATCGGATTCTGACA 59.565 43.478 20.98 0.00 0.00 3.58
704 1187 5.391950 CCAAAAACGATCGGATTCTGACAAT 60.392 40.000 20.98 0.00 0.00 2.71
713 1196 2.423538 GGATTCTGACAATGGAAACGGG 59.576 50.000 0.00 0.00 0.00 5.28
721 1204 1.396996 CAATGGAAACGGGTTAGAGCG 59.603 52.381 0.00 0.00 0.00 5.03
722 1205 0.743345 ATGGAAACGGGTTAGAGCGC 60.743 55.000 0.00 0.00 0.00 5.92
725 1208 1.411493 GAAACGGGTTAGAGCGCGAG 61.411 60.000 12.10 0.00 45.70 5.03
743 1226 3.800604 GCGAGAGGGTTAGGATTAAGCTG 60.801 52.174 0.00 0.00 37.42 4.24
744 1227 3.243907 CGAGAGGGTTAGGATTAAGCTGG 60.244 52.174 0.00 0.00 37.42 4.85
765 1248 4.202567 TGGGTTTCTCTGTCCTAAATTGCT 60.203 41.667 0.00 0.00 0.00 3.91
869 1352 5.675684 AAAAGAATCACAAACCTTGGTGT 57.324 34.783 0.00 0.00 36.43 4.16
894 1377 3.578716 TCTGTGTAAAGGAGGAGTCTTGG 59.421 47.826 0.00 0.00 0.00 3.61
896 1379 3.071023 TGTGTAAAGGAGGAGTCTTGGTG 59.929 47.826 0.00 0.00 0.00 4.17
897 1380 3.071167 GTGTAAAGGAGGAGTCTTGGTGT 59.929 47.826 0.00 0.00 0.00 4.16
902 1594 2.370189 AGGAGGAGTCTTGGTGTGAAAG 59.630 50.000 0.00 0.00 0.00 2.62
914 1606 2.492088 GGTGTGAAAGGAAGCCATTACC 59.508 50.000 0.00 0.00 0.00 2.85
915 1607 3.153919 GTGTGAAAGGAAGCCATTACCA 58.846 45.455 0.00 0.00 0.00 3.25
916 1608 3.763897 GTGTGAAAGGAAGCCATTACCAT 59.236 43.478 0.00 0.00 0.00 3.55
917 1609 4.220602 GTGTGAAAGGAAGCCATTACCATT 59.779 41.667 0.00 0.00 0.00 3.16
918 1610 5.417580 GTGTGAAAGGAAGCCATTACCATTA 59.582 40.000 0.00 0.00 0.00 1.90
919 1611 5.417580 TGTGAAAGGAAGCCATTACCATTAC 59.582 40.000 0.00 0.00 0.00 1.89
920 1612 4.953579 TGAAAGGAAGCCATTACCATTACC 59.046 41.667 0.00 0.00 0.00 2.85
921 1613 3.595190 AGGAAGCCATTACCATTACCC 57.405 47.619 0.00 0.00 0.00 3.69
922 1614 2.856231 AGGAAGCCATTACCATTACCCA 59.144 45.455 0.00 0.00 0.00 4.51
923 1615 3.467103 AGGAAGCCATTACCATTACCCAT 59.533 43.478 0.00 0.00 0.00 4.00
924 1616 4.078630 AGGAAGCCATTACCATTACCCATT 60.079 41.667 0.00 0.00 0.00 3.16
925 1617 5.135362 AGGAAGCCATTACCATTACCCATTA 59.865 40.000 0.00 0.00 0.00 1.90
926 1618 5.476945 GGAAGCCATTACCATTACCCATTAG 59.523 44.000 0.00 0.00 0.00 1.73
927 1619 5.663158 AGCCATTACCATTACCCATTAGT 57.337 39.130 0.00 0.00 0.00 2.24
928 1620 5.385198 AGCCATTACCATTACCCATTAGTG 58.615 41.667 0.00 0.00 0.00 2.74
929 1621 5.103686 AGCCATTACCATTACCCATTAGTGT 60.104 40.000 0.00 0.00 0.00 3.55
930 1622 6.102027 AGCCATTACCATTACCCATTAGTGTA 59.898 38.462 0.00 0.00 0.00 2.90
931 1623 6.430000 GCCATTACCATTACCCATTAGTGTAG 59.570 42.308 0.00 0.00 0.00 2.74
932 1624 7.514721 CCATTACCATTACCCATTAGTGTAGT 58.485 38.462 0.00 0.00 0.00 2.73
933 1625 8.653191 CCATTACCATTACCCATTAGTGTAGTA 58.347 37.037 0.00 0.00 0.00 1.82
938 1630 9.443365 ACCATTACCCATTAGTGTAGTAATACT 57.557 33.333 1.60 0.00 34.09 2.12
943 1635 8.370266 ACCCATTAGTGTAGTAATACTTGTCA 57.630 34.615 0.00 0.00 0.00 3.58
944 1636 8.475639 ACCCATTAGTGTAGTAATACTTGTCAG 58.524 37.037 0.00 0.00 0.00 3.51
945 1637 7.926555 CCCATTAGTGTAGTAATACTTGTCAGG 59.073 40.741 0.00 0.00 0.00 3.86
946 1638 7.926555 CCATTAGTGTAGTAATACTTGTCAGGG 59.073 40.741 0.00 0.00 0.00 4.45
947 1639 8.692710 CATTAGTGTAGTAATACTTGTCAGGGA 58.307 37.037 0.00 0.00 0.00 4.20
948 1640 6.777213 AGTGTAGTAATACTTGTCAGGGAG 57.223 41.667 0.00 0.00 0.00 4.30
949 1641 5.127356 AGTGTAGTAATACTTGTCAGGGAGC 59.873 44.000 0.00 0.00 0.00 4.70
950 1642 4.404715 TGTAGTAATACTTGTCAGGGAGCC 59.595 45.833 0.00 0.00 0.00 4.70
951 1643 3.725634 AGTAATACTTGTCAGGGAGCCT 58.274 45.455 0.00 0.00 0.00 4.58
952 1644 4.104831 AGTAATACTTGTCAGGGAGCCTT 58.895 43.478 0.00 0.00 0.00 4.35
953 1645 3.636153 AATACTTGTCAGGGAGCCTTC 57.364 47.619 0.00 0.00 0.00 3.46
954 1646 2.327325 TACTTGTCAGGGAGCCTTCT 57.673 50.000 0.00 0.00 0.00 2.85
1134 1839 1.457643 CTGGTGGATCCCCTCGCTA 60.458 63.158 9.90 0.00 34.77 4.26
1278 1992 2.022129 CGCCGTCGCAGAGAAAGTT 61.022 57.895 0.00 0.00 36.95 2.66
1280 1994 1.901650 GCCGTCGCAGAGAAAGTTGG 61.902 60.000 0.00 0.00 36.95 3.77
1284 1998 2.484889 GTCGCAGAGAAAGTTGGTTCT 58.515 47.619 0.00 0.00 40.62 3.01
1302 2026 2.065799 TCTTTTTCTTCCCCCTCTGCT 58.934 47.619 0.00 0.00 0.00 4.24
1303 2027 2.040412 TCTTTTTCTTCCCCCTCTGCTC 59.960 50.000 0.00 0.00 0.00 4.26
1304 2028 1.747444 TTTTCTTCCCCCTCTGCTCT 58.253 50.000 0.00 0.00 0.00 4.09
1305 2029 0.987294 TTTCTTCCCCCTCTGCTCTG 59.013 55.000 0.00 0.00 0.00 3.35
1309 2033 0.689080 TTCCCCCTCTGCTCTGCTAG 60.689 60.000 0.00 0.00 0.00 3.42
1310 2034 1.075674 CCCCCTCTGCTCTGCTAGA 60.076 63.158 0.00 0.00 0.00 2.43
1337 2401 6.996509 AGATAGATCTCTTCCATTCTGCTTC 58.003 40.000 0.00 0.00 29.30 3.86
1352 2422 0.465278 GCTTCCCTGGCTTGGATCTC 60.465 60.000 0.00 0.00 0.00 2.75
1356 2426 1.225704 CCTGGCTTGGATCTCCCAC 59.774 63.158 0.00 0.00 46.62 4.61
1361 2431 1.416401 GGCTTGGATCTCCCACGATTA 59.584 52.381 0.00 0.00 46.62 1.75
1363 2433 2.365617 GCTTGGATCTCCCACGATTAGA 59.634 50.000 0.00 0.00 46.62 2.10
1364 2434 3.800604 GCTTGGATCTCCCACGATTAGAC 60.801 52.174 0.00 0.00 46.62 2.59
1365 2435 1.954382 TGGATCTCCCACGATTAGACG 59.046 52.381 0.00 0.00 40.82 4.18
1366 2436 2.228059 GGATCTCCCACGATTAGACGA 58.772 52.381 0.00 0.00 37.03 4.20
1367 2437 2.820787 GGATCTCCCACGATTAGACGAT 59.179 50.000 0.00 0.00 37.03 3.73
1368 2438 3.256136 GGATCTCCCACGATTAGACGATT 59.744 47.826 0.00 0.00 37.03 3.34
1369 2439 4.458295 GGATCTCCCACGATTAGACGATTA 59.542 45.833 0.00 0.00 37.03 1.75
1370 2440 5.048224 GGATCTCCCACGATTAGACGATTAA 60.048 44.000 0.00 0.00 37.03 1.40
1371 2441 6.350277 GGATCTCCCACGATTAGACGATTAAT 60.350 42.308 0.00 0.00 37.03 1.40
1372 2442 6.401047 TCTCCCACGATTAGACGATTAATT 57.599 37.500 0.00 0.00 37.03 1.40
1373 2443 7.514784 TCTCCCACGATTAGACGATTAATTA 57.485 36.000 0.00 0.00 37.03 1.40
1374 2444 7.365741 TCTCCCACGATTAGACGATTAATTAC 58.634 38.462 0.00 0.00 37.03 1.89
1375 2445 7.230108 TCTCCCACGATTAGACGATTAATTACT 59.770 37.037 0.00 0.00 37.03 2.24
1379 2449 8.636843 CCACGATTAGACGATTAATTACTTAGC 58.363 37.037 0.00 0.00 37.03 3.09
1408 2478 6.070309 CCAACCAAAGAATGAAATGGGGAATA 60.070 38.462 0.00 0.00 37.26 1.75
1412 2496 8.267183 ACCAAAGAATGAAATGGGGAATAATTC 58.733 33.333 0.00 0.00 37.26 2.17
1441 2525 2.839486 TTTGGTCAGGTGAGCTACAG 57.161 50.000 10.35 0.00 42.60 2.74
1504 2592 4.742201 CACGGCGCTGCAGGTAGT 62.742 66.667 18.15 7.25 0.00 2.73
1507 2600 2.820037 GGCGCTGCAGGTAGTTCC 60.820 66.667 17.12 0.00 0.00 3.62
1609 2731 3.313526 ACTGCGGCATGAATAAAGATGTC 59.686 43.478 1.75 0.00 0.00 3.06
1642 2764 1.381191 GGTTATTGCCACCCCTGGG 60.381 63.158 5.50 5.50 38.13 4.45
1668 2790 7.227512 GGATTTCATCGAGGTAATCATCAACTT 59.772 37.037 24.30 0.00 0.00 2.66
1670 2792 8.420374 TTTCATCGAGGTAATCATCAACTTAC 57.580 34.615 0.00 0.00 0.00 2.34
1673 2795 8.909923 TCATCGAGGTAATCATCAACTTACTAA 58.090 33.333 0.00 0.00 0.00 2.24
1677 2799 9.186323 CGAGGTAATCATCAACTTACTAATCTG 57.814 37.037 0.00 0.00 0.00 2.90
1694 2865 7.341805 ACTAATCTGATGCTAACATTGTCCTT 58.658 34.615 0.00 0.00 36.35 3.36
1695 2866 8.486210 ACTAATCTGATGCTAACATTGTCCTTA 58.514 33.333 0.00 0.00 36.35 2.69
1698 2869 9.851686 AATCTGATGCTAACATTGTCCTTATTA 57.148 29.630 0.00 0.00 36.35 0.98
1771 2961 0.178998 CATCCCCCTCTGCTGATTGG 60.179 60.000 0.00 0.00 0.00 3.16
1772 2962 0.625683 ATCCCCCTCTGCTGATTGGT 60.626 55.000 0.00 0.00 0.00 3.67
1774 2964 1.565390 CCCCCTCTGCTGATTGGTCA 61.565 60.000 0.00 0.00 0.00 4.02
1775 2965 0.393537 CCCCTCTGCTGATTGGTCAC 60.394 60.000 0.00 0.00 0.00 3.67
1802 2994 8.625786 TTTTTGTACTACAAATTACTCCCTCC 57.374 34.615 13.88 0.00 46.17 4.30
1815 3007 7.628501 ATTACTCCCTCCGTTCCTAAATATT 57.371 36.000 0.00 0.00 0.00 1.28
1816 3008 5.970501 ACTCCCTCCGTTCCTAAATATTT 57.029 39.130 5.89 5.89 0.00 1.40
1817 3009 5.681639 ACTCCCTCCGTTCCTAAATATTTG 58.318 41.667 11.05 1.40 0.00 2.32
1823 3015 7.201705 CCCTCCGTTCCTAAATATTTGTCTTTC 60.202 40.741 11.05 0.00 0.00 2.62
1897 3089 7.516198 AAGTGTAGATTCACTCATTTTGCTT 57.484 32.000 0.00 0.00 46.25 3.91
1900 3092 5.700832 TGTAGATTCACTCATTTTGCTTCGT 59.299 36.000 0.00 0.00 0.00 3.85
1909 3101 6.090763 CACTCATTTTGCTTCGTATGTAGTCA 59.909 38.462 0.00 0.00 0.00 3.41
1911 3103 6.163476 TCATTTTGCTTCGTATGTAGTCACT 58.837 36.000 0.00 0.00 0.00 3.41
1913 3105 5.839262 TTTGCTTCGTATGTAGTCACTTG 57.161 39.130 0.00 0.00 0.00 3.16
1917 3109 4.921515 GCTTCGTATGTAGTCACTTGTTGA 59.078 41.667 0.00 0.00 0.00 3.18
1918 3110 5.577164 GCTTCGTATGTAGTCACTTGTTGAT 59.423 40.000 0.00 0.00 36.32 2.57
1933 3125 9.025041 TCACTTGTTGATATCTCTAGAAAGACA 57.975 33.333 3.98 0.00 0.00 3.41
1934 3126 9.645059 CACTTGTTGATATCTCTAGAAAGACAA 57.355 33.333 3.98 0.00 0.00 3.18
1957 3149 6.416631 AATATTTAGGAACGGAGGGAGTAC 57.583 41.667 0.00 0.00 0.00 2.73
1958 3150 2.905415 TTAGGAACGGAGGGAGTACA 57.095 50.000 0.00 0.00 0.00 2.90
1966 3158 5.048154 GGAACGGAGGGAGTACATACTTATC 60.048 48.000 0.00 0.00 36.50 1.75
2004 3196 4.261489 CCATTTACTCATCCTGCTGATTGC 60.261 45.833 0.00 0.00 43.25 3.56
2027 3219 0.250467 AAGGCGATGCTCACAGTGTT 60.250 50.000 0.00 0.00 0.00 3.32
2028 3220 0.952497 AGGCGATGCTCACAGTGTTG 60.952 55.000 0.00 0.00 0.00 3.33
2029 3221 0.950555 GGCGATGCTCACAGTGTTGA 60.951 55.000 0.00 0.00 0.00 3.18
2068 3283 7.683578 TCCTACTGATTGATATATGCTGCTTT 58.316 34.615 0.00 0.00 0.00 3.51
2075 3290 9.955208 TGATTGATATATGCTGCTTTAACAAAG 57.045 29.630 0.00 0.00 41.46 2.77
2078 3293 9.955208 TTGATATATGCTGCTTTAACAAAGATG 57.045 29.630 0.00 0.00 41.02 2.90
2080 3295 3.302365 TGCTGCTTTAACAAAGATGGC 57.698 42.857 0.00 4.13 41.02 4.40
2081 3296 2.253603 GCTGCTTTAACAAAGATGGCG 58.746 47.619 2.88 0.00 41.02 5.69
2082 3297 2.253603 CTGCTTTAACAAAGATGGCGC 58.746 47.619 0.00 0.00 41.02 6.53
2084 3299 2.295909 TGCTTTAACAAAGATGGCGCTT 59.704 40.909 7.64 0.00 41.02 4.68
2086 3301 4.157656 TGCTTTAACAAAGATGGCGCTTAT 59.842 37.500 7.64 1.68 41.02 1.73
2104 3319 7.601886 GGCGCTTATATATCTTCAGATGCATAT 59.398 37.037 7.64 0.00 36.05 1.78
2105 3320 8.646356 GCGCTTATATATCTTCAGATGCATATC 58.354 37.037 0.00 0.00 36.05 1.63
2136 3357 9.071276 AGTACTGTCATTCTTTCATTTGTTCAT 57.929 29.630 0.00 0.00 0.00 2.57
2150 3371 1.203928 GTTCATCCTGCTGATCGACG 58.796 55.000 0.00 0.00 0.00 5.12
2151 3372 0.817654 TTCATCCTGCTGATCGACGT 59.182 50.000 0.00 0.00 0.00 4.34
2163 3384 1.783711 GATCGACGTATGCTGCTTCAG 59.216 52.381 0.00 0.00 34.12 3.02
2175 3396 2.452767 GCTTCAGCAAAGGCAATGC 58.547 52.632 0.00 0.00 44.61 3.56
2181 3402 1.079612 GCAAAGGCAATGCTGACCC 60.080 57.895 4.82 0.00 40.64 4.46
2182 3403 1.818959 GCAAAGGCAATGCTGACCCA 61.819 55.000 4.82 0.00 40.64 4.51
2183 3404 0.037975 CAAAGGCAATGCTGACCCAC 60.038 55.000 4.82 0.00 0.00 4.61
2184 3405 0.469705 AAAGGCAATGCTGACCCACA 60.470 50.000 4.82 0.00 0.00 4.17
2185 3406 0.251922 AAGGCAATGCTGACCCACAT 60.252 50.000 4.82 0.00 0.00 3.21
2186 3407 0.251922 AGGCAATGCTGACCCACATT 60.252 50.000 4.82 0.00 36.96 2.71
2187 3408 1.005805 AGGCAATGCTGACCCACATTA 59.994 47.619 4.82 0.00 34.80 1.90
2188 3409 1.406539 GGCAATGCTGACCCACATTAG 59.593 52.381 4.82 0.00 34.80 1.73
2190 3411 3.278574 GCAATGCTGACCCACATTAGTA 58.721 45.455 0.00 0.00 34.80 1.82
2191 3412 3.313526 GCAATGCTGACCCACATTAGTAG 59.686 47.826 0.00 0.00 34.80 2.57
2194 3415 2.505407 TGCTGACCCACATTAGTAGCAT 59.495 45.455 0.00 0.00 35.06 3.79
2195 3416 3.054434 TGCTGACCCACATTAGTAGCATT 60.054 43.478 0.00 0.00 35.06 3.56
2196 3417 3.561725 GCTGACCCACATTAGTAGCATTC 59.438 47.826 0.00 0.00 0.00 2.67
2197 3418 4.769688 CTGACCCACATTAGTAGCATTCA 58.230 43.478 0.00 0.00 0.00 2.57
2198 3419 5.371526 CTGACCCACATTAGTAGCATTCAT 58.628 41.667 0.00 0.00 0.00 2.57
2200 3421 5.822519 TGACCCACATTAGTAGCATTCATTC 59.177 40.000 0.00 0.00 0.00 2.67
2201 3422 5.754782 ACCCACATTAGTAGCATTCATTCA 58.245 37.500 0.00 0.00 0.00 2.57
2202 3423 6.367983 ACCCACATTAGTAGCATTCATTCAT 58.632 36.000 0.00 0.00 0.00 2.57
2204 3425 7.013655 ACCCACATTAGTAGCATTCATTCATTC 59.986 37.037 0.00 0.00 0.00 2.67
2205 3426 7.013559 CCCACATTAGTAGCATTCATTCATTCA 59.986 37.037 0.00 0.00 0.00 2.57
2206 3427 8.573885 CCACATTAGTAGCATTCATTCATTCAT 58.426 33.333 0.00 0.00 0.00 2.57
2207 3428 9.961265 CACATTAGTAGCATTCATTCATTCATT 57.039 29.630 0.00 0.00 0.00 2.57
2213 3434 8.350722 AGTAGCATTCATTCATTCATTCATCAC 58.649 33.333 0.00 0.00 0.00 3.06
2214 3435 7.107639 AGCATTCATTCATTCATTCATCACA 57.892 32.000 0.00 0.00 0.00 3.58
2215 3436 6.978659 AGCATTCATTCATTCATTCATCACAC 59.021 34.615 0.00 0.00 0.00 3.82
2216 3437 6.978659 GCATTCATTCATTCATTCATCACACT 59.021 34.615 0.00 0.00 0.00 3.55
2217 3438 7.043391 GCATTCATTCATTCATTCATCACACTG 60.043 37.037 0.00 0.00 0.00 3.66
2218 3439 7.690952 TTCATTCATTCATTCATCACACTGA 57.309 32.000 0.00 0.00 0.00 3.41
2219 3440 7.875327 TCATTCATTCATTCATCACACTGAT 57.125 32.000 0.00 0.00 37.65 2.90
2221 3442 8.403236 TCATTCATTCATTCATCACACTGATTC 58.597 33.333 0.00 0.00 34.28 2.52
2222 3443 6.354039 TCATTCATTCATCACACTGATTCG 57.646 37.500 0.00 0.00 34.28 3.34
2223 3444 4.604843 TTCATTCATCACACTGATTCGC 57.395 40.909 0.00 0.00 34.28 4.70
2248 4174 1.307097 CTGCTTGAGCTAAGGCCATC 58.693 55.000 5.01 0.00 42.66 3.51
2269 4196 7.469594 GCCATCCATATACCAAGATGCATTATG 60.470 40.741 0.00 2.99 35.78 1.90
2287 4214 8.327941 GCATTATGCATTCTACCTAAATCTGA 57.672 34.615 12.80 0.00 44.26 3.27
2307 4244 0.888736 ATGCCAGCACTTACGCACAA 60.889 50.000 0.00 0.00 33.31 3.33
2347 4289 3.056891 GCAAGGCCAGCTTATTGTTAACA 60.057 43.478 5.01 3.59 0.00 2.41
2415 4357 0.457035 CGATGGAAGCCATGGTTTGG 59.543 55.000 19.60 0.00 45.26 3.28
2446 4388 6.743773 GCATCTCTTTCTATTACCCTGCTGAT 60.744 42.308 0.00 0.00 0.00 2.90
2485 4427 4.515191 TGAACAACATTGAGGAGTTGCTAC 59.485 41.667 5.31 0.00 46.79 3.58
2521 4463 7.277981 CACAGATACTTGTATGACCAAACTACC 59.722 40.741 0.00 0.00 0.00 3.18
2525 4467 4.700213 ACTTGTATGACCAAACTACCATGC 59.300 41.667 0.00 0.00 0.00 4.06
2526 4468 3.616219 TGTATGACCAAACTACCATGCC 58.384 45.455 0.00 0.00 0.00 4.40
2530 4472 2.308570 TGACCAAACTACCATGCCTCAT 59.691 45.455 0.00 0.00 0.00 2.90
2533 4475 5.129368 ACCAAACTACCATGCCTCATTAT 57.871 39.130 0.00 0.00 0.00 1.28
2534 4476 5.518865 ACCAAACTACCATGCCTCATTATT 58.481 37.500 0.00 0.00 0.00 1.40
2535 4477 5.360714 ACCAAACTACCATGCCTCATTATTG 59.639 40.000 0.00 0.00 0.00 1.90
2539 4481 5.555017 ACTACCATGCCTCATTATTGCTAG 58.445 41.667 0.00 0.00 0.00 3.42
2558 4500 6.000840 TGCTAGACAAACAAATGACCATACA 58.999 36.000 0.00 0.00 0.00 2.29
2699 4660 2.028567 CCCTCCAATCCTATTCTCGCTC 60.029 54.545 0.00 0.00 0.00 5.03
2830 4792 2.094182 GTGATTCTCGTGCCTGGTAAGA 60.094 50.000 0.21 0.21 0.00 2.10
2831 4793 2.166459 TGATTCTCGTGCCTGGTAAGAG 59.834 50.000 18.74 18.74 0.00 2.85
2860 4822 3.845781 TCCACTCCCATGCTTTATCTC 57.154 47.619 0.00 0.00 0.00 2.75
2900 4956 8.762645 TGATTACTCATGTCCAGACTATCTTTT 58.237 33.333 0.00 0.00 0.00 2.27
2901 4957 9.606631 GATTACTCATGTCCAGACTATCTTTTT 57.393 33.333 0.00 0.00 0.00 1.94
2902 4958 9.606631 ATTACTCATGTCCAGACTATCTTTTTC 57.393 33.333 0.00 0.00 0.00 2.29
3251 5317 8.058667 TGAACTGCTATGATTGTCATTTGATT 57.941 30.769 0.00 0.00 38.26 2.57
3345 5451 4.379918 GGCTGTTTAGGAAATCTTGTGCTC 60.380 45.833 0.00 0.00 0.00 4.26
3364 5470 6.202762 TGTGCTCGTCATATTAAACATCCATC 59.797 38.462 0.00 0.00 0.00 3.51
3430 5537 3.488047 GCCGTGATGAACATTCAATCTGG 60.488 47.826 0.00 0.97 41.13 3.86
3506 5688 7.339212 TCCATGGAATTTCTGGTTACATACTTG 59.661 37.037 13.46 0.00 29.17 3.16
3518 5701 6.127310 TGGTTACATACTTGCAGTTGGTTTTT 60.127 34.615 0.00 0.00 0.00 1.94
3564 5754 2.443887 AACCATTGTGATGCTTGTGC 57.556 45.000 0.00 0.00 40.20 4.57
3601 5798 4.842531 TCCTATCAGCAACATTCTTGGA 57.157 40.909 0.00 0.00 0.00 3.53
3697 5898 1.729267 AACACCCCCTGATGCCACTT 61.729 55.000 0.00 0.00 0.00 3.16
3782 5983 4.141846 CCTTCCTATGCAGTGTGATGTAGT 60.142 45.833 0.00 0.00 0.00 2.73
3798 5999 5.652452 TGATGTAGTGCTGTCTGTGTAGTAT 59.348 40.000 0.00 0.00 0.00 2.12
3834 6039 4.022503 GGAAGAACTACGTAGTGACTTGGT 60.023 45.833 33.06 20.53 45.73 3.67
3838 6043 6.000219 AGAACTACGTAGTGACTTGGTTAGA 59.000 40.000 28.00 0.00 45.73 2.10
4002 6219 3.979495 GCTTGACATTCAGAAGTTTGCAG 59.021 43.478 0.00 0.00 0.00 4.41
4008 6225 6.486320 TGACATTCAGAAGTTTGCAGTGAATA 59.514 34.615 0.00 0.00 36.04 1.75
4030 6247 2.203480 TGGTGGTTCCTTGCTGCC 60.203 61.111 0.00 0.00 37.07 4.85
4046 6263 4.445453 TGCTGCCTGTAGATAAATCTGTG 58.555 43.478 2.66 0.00 37.76 3.66
4047 6264 3.249559 GCTGCCTGTAGATAAATCTGTGC 59.750 47.826 2.66 1.47 37.76 4.57
4051 6268 4.272018 GCCTGTAGATAAATCTGTGCTGTG 59.728 45.833 2.66 0.00 37.76 3.66
4052 6269 5.423015 CCTGTAGATAAATCTGTGCTGTGT 58.577 41.667 2.66 0.00 37.76 3.72
4055 6272 6.230472 TGTAGATAAATCTGTGCTGTGTGTT 58.770 36.000 2.66 0.00 37.76 3.32
4057 6274 6.639632 AGATAAATCTGTGCTGTGTGTTTT 57.360 33.333 0.00 0.00 35.42 2.43
4059 6276 4.989279 AAATCTGTGCTGTGTGTTTTCT 57.011 36.364 0.00 0.00 0.00 2.52
4060 6277 7.661437 AGATAAATCTGTGCTGTGTGTTTTCTA 59.339 33.333 0.00 0.00 35.42 2.10
4065 6282 4.513442 TGTGCTGTGTGTTTTCTACTTCT 58.487 39.130 0.00 0.00 0.00 2.85
4067 6284 4.570772 GTGCTGTGTGTTTTCTACTTCTCA 59.429 41.667 0.00 0.00 0.00 3.27
4068 6285 5.237344 GTGCTGTGTGTTTTCTACTTCTCAT 59.763 40.000 0.00 0.00 0.00 2.90
4069 6286 5.237127 TGCTGTGTGTTTTCTACTTCTCATG 59.763 40.000 0.00 0.00 0.00 3.07
4071 6288 6.564873 GCTGTGTGTTTTCTACTTCTCATGTC 60.565 42.308 0.00 0.00 0.00 3.06
4075 6292 6.925718 TGTGTTTTCTACTTCTCATGTCTCTG 59.074 38.462 0.00 0.00 0.00 3.35
4076 6293 7.148641 GTGTTTTCTACTTCTCATGTCTCTGA 58.851 38.462 0.00 0.00 0.00 3.27
4078 6295 7.014711 TGTTTTCTACTTCTCATGTCTCTGAGT 59.985 37.037 4.32 0.00 42.68 3.41
4080 6297 7.618502 TTCTACTTCTCATGTCTCTGAGTAC 57.381 40.000 4.32 2.82 42.68 2.73
4087 6304 7.561021 TCTCATGTCTCTGAGTACTGATAAC 57.439 40.000 0.00 0.00 42.68 1.89
4088 6305 7.342581 TCTCATGTCTCTGAGTACTGATAACT 58.657 38.462 0.00 0.00 42.68 2.24
4090 6307 6.887002 TCATGTCTCTGAGTACTGATAACTGT 59.113 38.462 0.00 0.00 0.00 3.55
4148 6366 7.222000 TGGTTGATAATACAGGTTTTGTTCC 57.778 36.000 0.00 0.00 41.29 3.62
4156 6374 7.553881 AATACAGGTTTTGTTCCGATATCAG 57.446 36.000 3.12 0.00 41.29 2.90
4163 6381 7.881232 AGGTTTTGTTCCGATATCAGTTTTCTA 59.119 33.333 3.12 0.00 0.00 2.10
4166 6384 7.827819 TTGTTCCGATATCAGTTTTCTACAG 57.172 36.000 3.12 0.00 0.00 2.74
4235 6457 9.499479 AAGATTATATCTGAGCCATACAAACTG 57.501 33.333 0.00 0.00 40.13 3.16
4240 6624 5.039920 TCTGAGCCATACAAACTGCATAT 57.960 39.130 0.00 0.00 0.00 1.78
4431 6865 7.066284 GCATGATAACCCATCCATTATACAGAC 59.934 40.741 0.00 0.00 32.09 3.51
4437 6871 5.193728 ACCCATCCATTATACAGACCAACTT 59.806 40.000 0.00 0.00 0.00 2.66
4489 6927 3.309296 CTTAGATACCTTGGGGCTCAGA 58.691 50.000 0.00 0.00 35.63 3.27
4496 6934 1.281867 CCTTGGGGCTCAGACACAATA 59.718 52.381 0.00 0.00 0.00 1.90
4509 6947 4.633126 CAGACACAATACTCCCAGAACATG 59.367 45.833 0.00 0.00 0.00 3.21
4555 6993 6.255215 CACACGAGACAGTTTTGTTTACAAT 58.745 36.000 0.00 0.00 37.76 2.71
4557 6995 6.092944 ACACGAGACAGTTTTGTTTACAATCA 59.907 34.615 0.00 0.00 37.76 2.57
4598 7036 2.684881 GGTGAAAATCGATGGTCAGCAT 59.315 45.455 24.81 0.00 38.17 3.79
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
71 72 1.331399 GGAGAGGGGAGTCGGGAAAG 61.331 65.000 0.00 0.00 0.00 2.62
163 165 0.734889 GATGACATTGGAGGGCAACG 59.265 55.000 0.00 0.00 37.60 4.10
196 198 3.024547 ACAACTTATGCCTAGAGCTCGA 58.975 45.455 8.37 1.31 44.23 4.04
216 218 2.029623 TGGCTACCGAGAGTATGGAAC 58.970 52.381 0.00 0.00 0.00 3.62
217 219 2.447408 TGGCTACCGAGAGTATGGAA 57.553 50.000 0.00 0.00 0.00 3.53
218 220 2.677542 ATGGCTACCGAGAGTATGGA 57.322 50.000 0.00 0.00 0.00 3.41
317 794 2.665089 TTCGGGCCGTCATGGTGAT 61.665 57.895 27.32 0.00 41.21 3.06
338 815 2.841988 GCACAAGGGGGTTGCCAA 60.842 61.111 0.00 0.00 40.15 4.52
355 832 4.440802 CCAGAAGTATCAGAAGGGAGTTCG 60.441 50.000 0.00 0.00 40.49 3.95
379 856 0.323629 CGGTAGGGTGGTGATTGTGT 59.676 55.000 0.00 0.00 0.00 3.72
415 892 1.463831 CGCTGCTATAGACGATACGGT 59.536 52.381 3.21 0.00 0.00 4.83
423 900 2.735100 GCCGCCGCTGCTATAGAC 60.735 66.667 3.21 0.00 34.43 2.59
426 903 4.640855 GTCGCCGCCGCTGCTATA 62.641 66.667 5.20 0.00 34.43 1.31
465 948 2.587194 CGGGCCATTGCTCTCGAG 60.587 66.667 5.93 5.93 35.06 4.04
476 959 2.282887 GAGAAAAAGGGCGGGCCA 60.283 61.111 23.67 0.00 37.98 5.36
478 961 3.068691 GGGAGAAAAAGGGCGGGC 61.069 66.667 0.00 0.00 0.00 6.13
481 964 0.741221 CTCTCGGGAGAAAAAGGGCG 60.741 60.000 6.40 0.00 41.86 6.13
485 968 2.028567 AGTCTGCTCTCGGGAGAAAAAG 60.029 50.000 18.81 7.43 43.81 2.27
491 974 0.455410 CTTGAGTCTGCTCTCGGGAG 59.545 60.000 8.32 8.32 42.13 4.30
492 975 0.251386 ACTTGAGTCTGCTCTCGGGA 60.251 55.000 0.00 0.00 42.13 5.14
495 978 0.243365 AGCACTTGAGTCTGCTCTCG 59.757 55.000 0.00 0.00 42.13 4.04
496 979 2.730715 CGTAGCACTTGAGTCTGCTCTC 60.731 54.545 8.51 4.02 42.13 3.20
497 980 1.201181 CGTAGCACTTGAGTCTGCTCT 59.799 52.381 8.51 0.00 42.13 4.09
498 981 1.068194 ACGTAGCACTTGAGTCTGCTC 60.068 52.381 8.51 1.77 41.97 4.26
517 1000 3.312973 ACTCCTCGAGTCATTGTCGATAC 59.687 47.826 12.31 0.00 45.00 2.24
521 1004 3.759527 TTACTCCTCGAGTCATTGTCG 57.240 47.619 12.31 0.00 42.40 4.35
536 1019 7.417612 TCACACAAAGCAGAGAAAATTTACTC 58.582 34.615 0.00 0.00 0.00 2.59
537 1020 7.333528 TCACACAAAGCAGAGAAAATTTACT 57.666 32.000 0.00 0.00 0.00 2.24
548 1031 2.616256 CCTAGCCATCACACAAAGCAGA 60.616 50.000 0.00 0.00 0.00 4.26
576 1059 4.202253 GGAAATTTGGGAGCACTCTTGTTT 60.202 41.667 0.00 0.00 0.00 2.83
587 1070 1.271926 ACTCCGGTGGAAATTTGGGAG 60.272 52.381 8.63 6.38 45.09 4.30
591 1074 3.067684 ACCTACTCCGGTGGAAATTTG 57.932 47.619 8.63 0.00 35.52 2.32
602 1085 3.192001 TGTGCTAAACTGTACCTACTCCG 59.808 47.826 0.00 0.00 0.00 4.63
603 1086 4.796038 TGTGCTAAACTGTACCTACTCC 57.204 45.455 0.00 0.00 0.00 3.85
641 1124 7.556275 TGTCTTATGTCTTATCCCATGTTTTCC 59.444 37.037 0.00 0.00 0.00 3.13
677 1160 0.450184 AATCCGATCGTTTTTGGCGG 59.550 50.000 15.09 0.00 43.11 6.13
678 1161 1.396996 AGAATCCGATCGTTTTTGGCG 59.603 47.619 15.09 0.00 0.00 5.69
686 1169 2.430694 TCCATTGTCAGAATCCGATCGT 59.569 45.455 15.09 0.00 0.00 3.73
694 1177 3.154827 ACCCGTTTCCATTGTCAGAAT 57.845 42.857 0.00 0.00 0.00 2.40
700 1183 2.433436 GCTCTAACCCGTTTCCATTGT 58.567 47.619 0.00 0.00 0.00 2.71
702 1185 1.734163 CGCTCTAACCCGTTTCCATT 58.266 50.000 0.00 0.00 0.00 3.16
704 1187 1.375013 GCGCTCTAACCCGTTTCCA 60.375 57.895 0.00 0.00 0.00 3.53
713 1196 0.737219 TAACCCTCTCGCGCTCTAAC 59.263 55.000 5.56 0.00 0.00 2.34
721 1204 2.365941 AGCTTAATCCTAACCCTCTCGC 59.634 50.000 0.00 0.00 0.00 5.03
722 1205 3.243907 CCAGCTTAATCCTAACCCTCTCG 60.244 52.174 0.00 0.00 0.00 4.04
725 1208 2.778270 ACCCAGCTTAATCCTAACCCTC 59.222 50.000 0.00 0.00 0.00 4.30
743 1226 4.336280 AGCAATTTAGGACAGAGAAACCC 58.664 43.478 0.00 0.00 0.00 4.11
744 1227 6.092807 CACTAGCAATTTAGGACAGAGAAACC 59.907 42.308 0.00 0.00 0.00 3.27
852 1335 2.362077 GAGCACACCAAGGTTTGTGATT 59.638 45.455 12.48 1.92 42.24 2.57
853 1336 1.956477 GAGCACACCAAGGTTTGTGAT 59.044 47.619 12.48 7.09 44.76 3.06
861 1344 2.254546 TTACACAGAGCACACCAAGG 57.745 50.000 0.00 0.00 0.00 3.61
869 1352 2.563179 GACTCCTCCTTTACACAGAGCA 59.437 50.000 0.00 0.00 0.00 4.26
894 1377 3.153919 TGGTAATGGCTTCCTTTCACAC 58.846 45.455 0.00 0.00 0.00 3.82
896 1379 5.163550 GGTAATGGTAATGGCTTCCTTTCAC 60.164 44.000 0.00 0.00 0.00 3.18
897 1380 4.953579 GGTAATGGTAATGGCTTCCTTTCA 59.046 41.667 0.00 0.00 0.00 2.69
902 1594 3.306472 TGGGTAATGGTAATGGCTTCC 57.694 47.619 0.00 0.00 0.00 3.46
917 1609 9.478238 TGACAAGTATTACTACACTAATGGGTA 57.522 33.333 0.00 0.00 0.00 3.69
918 1610 8.370266 TGACAAGTATTACTACACTAATGGGT 57.630 34.615 0.00 0.00 0.00 4.51
919 1611 7.926555 CCTGACAAGTATTACTACACTAATGGG 59.073 40.741 0.00 0.00 0.00 4.00
920 1612 7.926555 CCCTGACAAGTATTACTACACTAATGG 59.073 40.741 0.00 0.00 0.00 3.16
921 1613 8.692710 TCCCTGACAAGTATTACTACACTAATG 58.307 37.037 0.00 0.00 0.00 1.90
922 1614 8.834004 TCCCTGACAAGTATTACTACACTAAT 57.166 34.615 0.00 0.00 0.00 1.73
923 1615 7.147949 GCTCCCTGACAAGTATTACTACACTAA 60.148 40.741 0.00 0.00 0.00 2.24
924 1616 6.320672 GCTCCCTGACAAGTATTACTACACTA 59.679 42.308 0.00 0.00 0.00 2.74
925 1617 5.127356 GCTCCCTGACAAGTATTACTACACT 59.873 44.000 0.00 0.00 0.00 3.55
926 1618 5.349809 GCTCCCTGACAAGTATTACTACAC 58.650 45.833 0.00 0.00 0.00 2.90
927 1619 4.404715 GGCTCCCTGACAAGTATTACTACA 59.595 45.833 0.00 0.00 0.00 2.74
928 1620 4.650131 AGGCTCCCTGACAAGTATTACTAC 59.350 45.833 0.00 0.00 29.57 2.73
929 1621 4.880164 AGGCTCCCTGACAAGTATTACTA 58.120 43.478 0.00 0.00 29.57 1.82
930 1622 3.725634 AGGCTCCCTGACAAGTATTACT 58.274 45.455 0.00 0.00 29.57 2.24
931 1623 4.162509 AGAAGGCTCCCTGACAAGTATTAC 59.837 45.833 0.00 0.00 32.13 1.89
932 1624 4.362677 AGAAGGCTCCCTGACAAGTATTA 58.637 43.478 0.00 0.00 32.13 0.98
933 1625 3.185455 AGAAGGCTCCCTGACAAGTATT 58.815 45.455 0.00 0.00 32.13 1.89
934 1626 2.839228 AGAAGGCTCCCTGACAAGTAT 58.161 47.619 0.00 0.00 32.13 2.12
935 1627 2.327325 AGAAGGCTCCCTGACAAGTA 57.673 50.000 0.00 0.00 32.13 2.24
936 1628 1.349357 GAAGAAGGCTCCCTGACAAGT 59.651 52.381 0.00 0.00 32.13 3.16
937 1629 1.627834 AGAAGAAGGCTCCCTGACAAG 59.372 52.381 0.00 0.00 32.13 3.16
938 1630 1.734655 AGAAGAAGGCTCCCTGACAA 58.265 50.000 0.00 0.00 32.13 3.18
939 1631 1.625818 GAAGAAGAAGGCTCCCTGACA 59.374 52.381 0.00 0.00 32.13 3.58
940 1632 1.905894 AGAAGAAGAAGGCTCCCTGAC 59.094 52.381 0.00 0.00 32.13 3.51
941 1633 2.334006 AGAAGAAGAAGGCTCCCTGA 57.666 50.000 0.00 0.00 32.13 3.86
942 1634 2.571202 AGAAGAAGAAGAAGGCTCCCTG 59.429 50.000 0.00 0.00 32.13 4.45
943 1635 2.914536 AGAAGAAGAAGAAGGCTCCCT 58.085 47.619 0.00 0.00 33.87 4.20
944 1636 3.342719 CAAGAAGAAGAAGAAGGCTCCC 58.657 50.000 0.00 0.00 0.00 4.30
945 1637 3.244735 ACCAAGAAGAAGAAGAAGGCTCC 60.245 47.826 0.00 0.00 0.00 4.70
946 1638 3.750652 CACCAAGAAGAAGAAGAAGGCTC 59.249 47.826 0.00 0.00 0.00 4.70
947 1639 3.497584 CCACCAAGAAGAAGAAGAAGGCT 60.498 47.826 0.00 0.00 0.00 4.58
948 1640 2.816672 CCACCAAGAAGAAGAAGAAGGC 59.183 50.000 0.00 0.00 0.00 4.35
949 1641 4.040952 TCTCCACCAAGAAGAAGAAGAAGG 59.959 45.833 0.00 0.00 0.00 3.46
950 1642 5.011533 TCTCTCCACCAAGAAGAAGAAGAAG 59.988 44.000 0.00 0.00 0.00 2.85
951 1643 4.901849 TCTCTCCACCAAGAAGAAGAAGAA 59.098 41.667 0.00 0.00 0.00 2.52
952 1644 4.483950 TCTCTCCACCAAGAAGAAGAAGA 58.516 43.478 0.00 0.00 0.00 2.87
953 1645 4.526262 TCTCTCTCCACCAAGAAGAAGAAG 59.474 45.833 0.00 0.00 0.00 2.85
954 1646 4.483950 TCTCTCTCCACCAAGAAGAAGAA 58.516 43.478 0.00 0.00 0.00 2.52
1278 1992 2.789399 AGAGGGGGAAGAAAAAGAACCA 59.211 45.455 0.00 0.00 0.00 3.67
1280 1994 2.558795 GCAGAGGGGGAAGAAAAAGAAC 59.441 50.000 0.00 0.00 0.00 3.01
1284 1998 2.065799 AGAGCAGAGGGGGAAGAAAAA 58.934 47.619 0.00 0.00 0.00 1.94
1302 2026 7.236640 TGGAAGAGATCTATCTACTCTAGCAGA 59.763 40.741 0.00 0.00 39.63 4.26
1303 2027 7.394016 TGGAAGAGATCTATCTACTCTAGCAG 58.606 42.308 0.00 0.00 39.63 4.24
1304 2028 7.323052 TGGAAGAGATCTATCTACTCTAGCA 57.677 40.000 0.00 0.00 39.63 3.49
1305 2029 8.807948 AATGGAAGAGATCTATCTACTCTAGC 57.192 38.462 0.00 0.00 39.63 3.42
1309 2033 7.394359 AGCAGAATGGAAGAGATCTATCTACTC 59.606 40.741 0.00 0.00 34.77 2.59
1310 2034 7.240897 AGCAGAATGGAAGAGATCTATCTACT 58.759 38.462 0.00 0.00 34.77 2.57
1337 2401 2.002977 TGGGAGATCCAAGCCAGGG 61.003 63.158 0.47 0.00 43.84 4.45
1352 2422 7.941795 AAGTAATTAATCGTCTAATCGTGGG 57.058 36.000 0.00 0.00 0.00 4.61
1361 2431 9.310716 GTTGGTTAGCTAAGTAATTAATCGTCT 57.689 33.333 6.38 0.00 0.00 4.18
1363 2433 8.042515 TGGTTGGTTAGCTAAGTAATTAATCGT 58.957 33.333 6.38 0.00 0.00 3.73
1364 2434 8.428186 TGGTTGGTTAGCTAAGTAATTAATCG 57.572 34.615 6.38 0.00 0.00 3.34
1367 2437 9.796180 TCTTTGGTTGGTTAGCTAAGTAATTAA 57.204 29.630 6.38 2.81 37.99 1.40
1368 2438 9.796180 TTCTTTGGTTGGTTAGCTAAGTAATTA 57.204 29.630 6.38 0.00 37.99 1.40
1369 2439 8.700439 TTCTTTGGTTGGTTAGCTAAGTAATT 57.300 30.769 6.38 0.00 37.99 1.40
1370 2440 8.739972 CATTCTTTGGTTGGTTAGCTAAGTAAT 58.260 33.333 6.38 0.00 37.99 1.89
1371 2441 7.940137 TCATTCTTTGGTTGGTTAGCTAAGTAA 59.060 33.333 6.38 2.33 37.99 2.24
1372 2442 7.455058 TCATTCTTTGGTTGGTTAGCTAAGTA 58.545 34.615 6.38 0.00 37.99 2.24
1373 2443 6.303839 TCATTCTTTGGTTGGTTAGCTAAGT 58.696 36.000 6.38 0.00 37.99 2.24
1374 2444 6.817765 TCATTCTTTGGTTGGTTAGCTAAG 57.182 37.500 6.38 0.00 38.09 2.18
1375 2445 7.589958 TTTCATTCTTTGGTTGGTTAGCTAA 57.410 32.000 0.86 0.86 0.00 3.09
1379 2449 6.165577 CCCATTTCATTCTTTGGTTGGTTAG 58.834 40.000 0.00 0.00 0.00 2.34
1408 2478 6.646240 CACCTGACCAAAATCAAAATCGAATT 59.354 34.615 0.00 0.00 0.00 2.17
1412 2496 5.119931 TCACCTGACCAAAATCAAAATCG 57.880 39.130 0.00 0.00 0.00 3.34
1503 2591 5.236282 AGAAGTAGAGGTAAAAAGCGGAAC 58.764 41.667 0.00 0.00 0.00 3.62
1504 2592 5.245526 AGAGAAGTAGAGGTAAAAAGCGGAA 59.754 40.000 0.00 0.00 0.00 4.30
1507 2600 6.391537 AGAAGAGAAGTAGAGGTAAAAAGCG 58.608 40.000 0.00 0.00 0.00 4.68
1609 2731 8.287503 GTGGCAATAACCCTCTTAATAAATACG 58.712 37.037 0.00 0.00 0.00 3.06
1642 2764 6.708054 AGTTGATGATTACCTCGATGAAATCC 59.292 38.462 9.81 0.23 41.39 3.01
1668 2790 8.023021 AGGACAATGTTAGCATCAGATTAGTA 57.977 34.615 0.00 0.00 33.50 1.82
1670 2792 7.798596 AAGGACAATGTTAGCATCAGATTAG 57.201 36.000 0.00 0.00 33.50 1.73
1673 2795 9.277783 GTAATAAGGACAATGTTAGCATCAGAT 57.722 33.333 0.00 0.00 33.50 2.90
1677 2799 9.542462 TGTAGTAATAAGGACAATGTTAGCATC 57.458 33.333 0.00 0.00 33.50 3.91
1678 2800 9.899661 TTGTAGTAATAAGGACAATGTTAGCAT 57.100 29.630 0.00 0.00 36.80 3.79
1754 2944 1.229951 ACCAATCAGCAGAGGGGGA 60.230 57.895 4.89 0.00 0.00 4.81
1781 2973 5.018809 ACGGAGGGAGTAATTTGTAGTACA 58.981 41.667 0.00 0.00 0.00 2.90
1789 2981 5.767277 TTTAGGAACGGAGGGAGTAATTT 57.233 39.130 0.00 0.00 0.00 1.82
1792 2984 7.092757 ACAAATATTTAGGAACGGAGGGAGTAA 60.093 37.037 0.00 0.00 0.00 2.24
1886 3078 6.311445 AGTGACTACATACGAAGCAAAATGAG 59.689 38.462 0.00 0.00 0.00 2.90
1897 3089 8.221965 AGATATCAACAAGTGACTACATACGA 57.778 34.615 5.32 0.00 39.72 3.43
1925 3117 7.553044 CCTCCGTTCCTAAATATTTGTCTTTCT 59.447 37.037 11.05 0.00 0.00 2.52
1926 3118 7.201705 CCCTCCGTTCCTAAATATTTGTCTTTC 60.202 40.741 11.05 0.00 0.00 2.62
1933 3125 5.970501 ACTCCCTCCGTTCCTAAATATTT 57.029 39.130 5.89 5.89 0.00 1.40
1934 3126 5.901276 TGTACTCCCTCCGTTCCTAAATATT 59.099 40.000 0.00 0.00 0.00 1.28
1942 3134 2.664015 AGTATGTACTCCCTCCGTTCC 58.336 52.381 0.00 0.00 0.00 3.62
1966 3158 9.865321 ATGAGTAAATGGAAGAATGAACAAATG 57.135 29.630 0.00 0.00 0.00 2.32
2068 3283 9.151471 GAAGATATATAAGCGCCATCTTTGTTA 57.849 33.333 2.29 0.00 36.38 2.41
2075 3290 6.073873 GCATCTGAAGATATATAAGCGCCATC 60.074 42.308 2.29 0.00 32.63 3.51
2076 3291 5.757320 GCATCTGAAGATATATAAGCGCCAT 59.243 40.000 2.29 0.00 32.63 4.40
2077 3292 5.111989 GCATCTGAAGATATATAAGCGCCA 58.888 41.667 2.29 0.00 32.63 5.69
2078 3293 5.111989 TGCATCTGAAGATATATAAGCGCC 58.888 41.667 2.29 0.00 32.63 6.53
2080 3295 9.688592 TGATATGCATCTGAAGATATATAAGCG 57.311 33.333 0.19 0.00 32.63 4.68
2104 3319 9.778741 AAATGAAAGAATGACAGTACTACTTGA 57.221 29.630 0.00 0.00 0.00 3.02
2105 3320 9.817365 CAAATGAAAGAATGACAGTACTACTTG 57.183 33.333 0.00 0.00 0.00 3.16
2107 3322 9.561069 AACAAATGAAAGAATGACAGTACTACT 57.439 29.630 0.00 0.00 0.00 2.57
2108 3323 9.813080 GAACAAATGAAAGAATGACAGTACTAC 57.187 33.333 0.00 0.00 0.00 2.73
2109 3324 9.554395 TGAACAAATGAAAGAATGACAGTACTA 57.446 29.630 0.00 0.00 0.00 1.82
2126 3341 3.624410 TCGATCAGCAGGATGAACAAATG 59.376 43.478 0.00 0.00 39.69 2.32
2136 3357 0.030773 GCATACGTCGATCAGCAGGA 59.969 55.000 0.00 0.00 0.00 3.86
2163 3384 1.079612 GGGTCAGCATTGCCTTTGC 60.080 57.895 4.70 0.00 40.45 3.68
2167 3388 0.251922 AATGTGGGTCAGCATTGCCT 60.252 50.000 4.70 0.00 34.44 4.75
2169 3390 2.094675 ACTAATGTGGGTCAGCATTGC 58.905 47.619 0.00 0.00 36.75 3.56
2170 3391 3.313526 GCTACTAATGTGGGTCAGCATTG 59.686 47.826 0.00 0.00 36.75 2.82
2171 3392 3.054434 TGCTACTAATGTGGGTCAGCATT 60.054 43.478 0.00 0.00 38.63 3.56
2172 3393 2.505407 TGCTACTAATGTGGGTCAGCAT 59.495 45.455 0.00 0.00 32.94 3.79
2174 3395 2.691409 TGCTACTAATGTGGGTCAGC 57.309 50.000 0.00 0.00 0.00 4.26
2175 3396 4.769688 TGAATGCTACTAATGTGGGTCAG 58.230 43.478 0.00 0.00 0.00 3.51
2177 3398 5.822519 TGAATGAATGCTACTAATGTGGGTC 59.177 40.000 0.00 0.00 0.00 4.46
2178 3399 5.754782 TGAATGAATGCTACTAATGTGGGT 58.245 37.500 0.00 0.00 0.00 4.51
2179 3400 6.889301 ATGAATGAATGCTACTAATGTGGG 57.111 37.500 0.00 0.00 0.00 4.61
2181 3402 9.961265 AATGAATGAATGAATGCTACTAATGTG 57.039 29.630 0.00 0.00 0.00 3.21
2186 3407 9.563748 TGATGAATGAATGAATGAATGCTACTA 57.436 29.630 0.00 0.00 0.00 1.82
2187 3408 8.350722 GTGATGAATGAATGAATGAATGCTACT 58.649 33.333 0.00 0.00 0.00 2.57
2188 3409 8.132995 TGTGATGAATGAATGAATGAATGCTAC 58.867 33.333 0.00 0.00 0.00 3.58
2190 3411 6.978659 GTGTGATGAATGAATGAATGAATGCT 59.021 34.615 0.00 0.00 0.00 3.79
2191 3412 6.978659 AGTGTGATGAATGAATGAATGAATGC 59.021 34.615 0.00 0.00 0.00 3.56
2194 3415 7.690952 TCAGTGTGATGAATGAATGAATGAA 57.309 32.000 0.00 0.00 0.00 2.57
2195 3416 7.875327 ATCAGTGTGATGAATGAATGAATGA 57.125 32.000 0.00 0.00 35.43 2.57
2196 3417 7.376072 CGAATCAGTGTGATGAATGAATGAATG 59.624 37.037 0.00 0.00 37.15 2.67
2197 3418 7.415229 CGAATCAGTGTGATGAATGAATGAAT 58.585 34.615 0.00 0.00 37.15 2.57
2198 3419 6.676213 GCGAATCAGTGTGATGAATGAATGAA 60.676 38.462 0.00 0.00 37.15 2.57
2200 3421 4.968181 GCGAATCAGTGTGATGAATGAATG 59.032 41.667 0.00 0.00 37.15 2.67
2201 3422 4.637091 TGCGAATCAGTGTGATGAATGAAT 59.363 37.500 0.00 0.00 37.15 2.57
2202 3423 4.002316 TGCGAATCAGTGTGATGAATGAA 58.998 39.130 0.00 0.00 37.15 2.57
2204 3425 4.547406 ATGCGAATCAGTGTGATGAATG 57.453 40.909 0.00 0.00 37.15 2.67
2205 3426 5.334646 GCATATGCGAATCAGTGTGATGAAT 60.335 40.000 12.82 0.00 37.15 2.57
2206 3427 4.024641 GCATATGCGAATCAGTGTGATGAA 60.025 41.667 12.82 0.00 37.15 2.57
2207 3428 3.495753 GCATATGCGAATCAGTGTGATGA 59.504 43.478 12.82 0.00 37.15 2.92
2210 3431 4.835304 GCAGCATATGCGAATCAGTGTGA 61.835 47.826 21.57 0.00 46.99 3.58
2211 3432 2.601504 GCAGCATATGCGAATCAGTGTG 60.602 50.000 21.57 12.02 46.99 3.82
2213 3434 2.311450 GCAGCATATGCGAATCAGTG 57.689 50.000 21.57 13.40 46.99 3.66
2235 4161 3.519510 TGGTATATGGATGGCCTTAGCTC 59.480 47.826 3.32 0.00 39.73 4.09
2239 4165 5.573502 GCATCTTGGTATATGGATGGCCTTA 60.574 44.000 3.32 0.00 36.88 2.69
2241 4167 3.308688 GCATCTTGGTATATGGATGGCCT 60.309 47.826 3.32 0.00 36.88 5.19
2276 4203 3.019564 GTGCTGGCATTCAGATTTAGGT 58.980 45.455 0.00 0.00 46.18 3.08
2285 4212 0.605050 TGCGTAAGTGCTGGCATTCA 60.605 50.000 0.00 0.00 41.68 2.57
2287 4214 0.888736 TGTGCGTAAGTGCTGGCATT 60.889 50.000 0.00 0.00 37.77 3.56
2307 4244 2.588620 TGCCGGACCTGTAAAAATGTT 58.411 42.857 5.05 0.00 0.00 2.71
2347 4289 3.282021 AGTGTTCATTCTGTGCAACACT 58.718 40.909 10.07 10.07 45.67 3.55
2415 4357 5.234543 GGGTAATAGAAAGAGATGCAACGAC 59.765 44.000 0.00 0.00 0.00 4.34
2446 4388 3.819368 TGTTCAAGGAGACAATGCTCAA 58.181 40.909 6.92 0.00 36.62 3.02
2485 4427 1.198713 AGTATCTGTGGACCTGGCAG 58.801 55.000 7.75 7.75 0.00 4.85
2521 4463 6.183360 TGTTTGTCTAGCAATAATGAGGCATG 60.183 38.462 0.00 0.00 36.89 4.06
2525 4467 8.461222 TCATTTGTTTGTCTAGCAATAATGAGG 58.539 33.333 16.92 4.30 36.27 3.86
2526 4468 9.282247 GTCATTTGTTTGTCTAGCAATAATGAG 57.718 33.333 18.86 6.65 38.66 2.90
2530 4472 7.517614 TGGTCATTTGTTTGTCTAGCAATAA 57.482 32.000 1.30 0.00 36.89 1.40
2533 4475 6.488344 TGTATGGTCATTTGTTTGTCTAGCAA 59.512 34.615 0.00 0.00 34.87 3.91
2534 4476 6.000840 TGTATGGTCATTTGTTTGTCTAGCA 58.999 36.000 0.00 0.00 0.00 3.49
2535 4477 6.494893 TGTATGGTCATTTGTTTGTCTAGC 57.505 37.500 0.00 0.00 0.00 3.42
2539 4481 9.162764 AGTAGTATGTATGGTCATTTGTTTGTC 57.837 33.333 0.00 0.00 0.00 3.18
2558 4500 5.134661 GTCCTCCTCTTGCAGTAGTAGTAT 58.865 45.833 0.00 0.00 0.00 2.12
2699 4660 2.141517 CGGGCATAGAATTGAGCAGAG 58.858 52.381 0.00 0.00 0.00 3.35
2830 4792 1.434188 TGGGAGTGGATGTGTTGTCT 58.566 50.000 0.00 0.00 0.00 3.41
2831 4793 2.086869 CATGGGAGTGGATGTGTTGTC 58.913 52.381 0.00 0.00 0.00 3.18
2860 4822 9.809096 ACATGAGTAATCAGTTATAACACAGAG 57.191 33.333 17.65 2.70 0.00 3.35
2900 4956 3.193267 ACAGCAGTTGCAAGTTTTCAGAA 59.807 39.130 3.38 0.00 45.16 3.02
2901 4957 2.754552 ACAGCAGTTGCAAGTTTTCAGA 59.245 40.909 3.38 0.00 45.16 3.27
2902 4958 2.855963 CACAGCAGTTGCAAGTTTTCAG 59.144 45.455 3.38 0.00 45.16 3.02
3156 5220 7.252708 TGCAATATGACTAGCACAAGATTTTG 58.747 34.615 0.00 0.00 40.24 2.44
3251 5317 7.012327 GTGCATTCTACTCTTATGCCATTACAA 59.988 37.037 0.00 0.00 43.01 2.41
3345 5451 8.620416 TCAAAAGGATGGATGTTTAATATGACG 58.380 33.333 0.00 0.00 0.00 4.35
3396 5503 4.291540 TCATCACGGCAATTCAATAAGC 57.708 40.909 0.00 0.00 0.00 3.09
3430 5537 5.652994 AGGACACTCTACTCTTGTGATTC 57.347 43.478 0.00 0.00 35.83 2.52
3506 5688 8.878769 TGAAAAATTTAGAGAAAAACCAACTGC 58.121 29.630 0.00 0.00 0.00 4.40
3518 5701 9.120538 AGTACAAGTTGCTGAAAAATTTAGAGA 57.879 29.630 1.81 0.00 0.00 3.10
3601 5798 6.950842 TCTTGTGAAGGACATCATGTATCTT 58.049 36.000 5.75 5.75 33.40 2.40
3697 5898 7.761249 CCAACATAGCTCGATAACATCATATCA 59.239 37.037 0.00 0.00 32.84 2.15
3782 5983 8.195436 GGATTAAGTAATACTACACAGACAGCA 58.805 37.037 0.00 0.00 0.00 4.41
3798 5999 6.438425 ACGTAGTTCTTCCCAGGATTAAGTAA 59.562 38.462 0.00 0.00 37.78 2.24
3834 6039 3.007940 CAGGGGTGAGTGACAACATCTAA 59.992 47.826 0.00 0.00 38.06 2.10
3838 6043 0.401738 CCAGGGGTGAGTGACAACAT 59.598 55.000 0.00 0.00 38.06 2.71
3918 6135 5.707298 ACAGCTACGTTTACTAGAAGGTGTA 59.293 40.000 12.41 0.00 42.12 2.90
3933 6150 3.181499 CGGTAAGATTCAGACAGCTACGT 60.181 47.826 0.00 0.00 0.00 3.57
4002 6219 5.469479 CAAGGAACCACCACAATTATTCAC 58.531 41.667 0.00 0.00 42.04 3.18
4008 6225 1.688197 CAGCAAGGAACCACCACAATT 59.312 47.619 0.00 0.00 42.04 2.32
4030 6247 5.871524 ACACACAGCACAGATTTATCTACAG 59.128 40.000 0.00 0.00 34.85 2.74
4046 6263 5.237344 ACATGAGAAGTAGAAAACACACAGC 59.763 40.000 0.00 0.00 0.00 4.40
4047 6264 6.703607 AGACATGAGAAGTAGAAAACACACAG 59.296 38.462 0.00 0.00 0.00 3.66
4051 6268 7.148641 TCAGAGACATGAGAAGTAGAAAACAC 58.851 38.462 0.00 0.00 0.00 3.32
4052 6269 7.290110 TCAGAGACATGAGAAGTAGAAAACA 57.710 36.000 0.00 0.00 0.00 2.83
4065 6282 6.887002 ACAGTTATCAGTACTCAGAGACATGA 59.113 38.462 3.79 5.15 0.00 3.07
4067 6284 7.710676 AACAGTTATCAGTACTCAGAGACAT 57.289 36.000 3.79 0.00 0.00 3.06
4068 6285 7.448777 AGAAACAGTTATCAGTACTCAGAGACA 59.551 37.037 3.79 0.00 0.00 3.41
4069 6286 7.822658 AGAAACAGTTATCAGTACTCAGAGAC 58.177 38.462 3.79 0.00 0.00 3.36
4071 6288 8.050778 AGAGAAACAGTTATCAGTACTCAGAG 57.949 38.462 0.00 0.00 0.00 3.35
4075 6292 7.868415 ACACAAGAGAAACAGTTATCAGTACTC 59.132 37.037 0.00 0.00 0.00 2.59
4076 6293 7.727181 ACACAAGAGAAACAGTTATCAGTACT 58.273 34.615 0.00 0.00 0.00 2.73
4078 6295 9.639601 CATACACAAGAGAAACAGTTATCAGTA 57.360 33.333 0.00 0.00 0.00 2.74
4080 6297 8.539770 ACATACACAAGAGAAACAGTTATCAG 57.460 34.615 0.00 0.00 0.00 2.90
4087 6304 7.946655 TCAACTACATACACAAGAGAAACAG 57.053 36.000 0.00 0.00 0.00 3.16
4088 6305 7.931407 ACATCAACTACATACACAAGAGAAACA 59.069 33.333 0.00 0.00 0.00 2.83
4142 6360 7.330946 CACTGTAGAAAACTGATATCGGAACAA 59.669 37.037 18.63 0.00 0.00 2.83
4407 6837 7.239563 TGGTCTGTATAATGGATGGGTTATCAT 59.760 37.037 0.00 0.00 37.54 2.45
4431 6865 1.966451 GCACCGGAGTGGAAGTTGG 60.966 63.158 9.46 0.00 44.69 3.77
4437 6871 0.396556 TAGCATAGCACCGGAGTGGA 60.397 55.000 9.46 0.00 44.69 4.02
4489 6927 3.347216 GCATGTTCTGGGAGTATTGTGT 58.653 45.455 0.00 0.00 0.00 3.72
4496 6934 1.202758 TGTTTCGCATGTTCTGGGAGT 60.203 47.619 0.00 0.00 46.27 3.85
4509 6947 1.060698 GTTGTATCTCGGCTGTTTCGC 59.939 52.381 0.00 0.00 0.00 4.70


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.