Multiple sequence alignment - TraesCS2B01G615900

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G615900 chr2B 100.000 2624 0 0 648 3271 793518658 793516035 0.000000e+00 4846.0
1 TraesCS2B01G615900 chr2B 84.495 1019 143 11 1117 2123 793506199 793505184 0.000000e+00 992.0
2 TraesCS2B01G615900 chr2B 77.223 1001 178 40 1138 2122 793447017 793446051 1.030000e-149 540.0
3 TraesCS2B01G615900 chr2B 100.000 233 0 0 1 233 793519305 793519073 6.480000e-117 431.0
4 TraesCS2B01G615900 chr2B 85.714 112 14 1 2539 2648 748585890 748586001 2.060000e-22 117.0
5 TraesCS2B01G615900 chr2D 91.086 1593 99 17 809 2394 643330022 643331578 0.000000e+00 2115.0
6 TraesCS2B01G615900 chr2D 84.872 1018 132 11 1117 2123 643435169 643436175 0.000000e+00 1007.0
7 TraesCS2B01G615900 chr2D 77.382 955 179 26 1186 2128 643468535 643467606 1.730000e-147 532.0
8 TraesCS2B01G615900 chr2D 85.714 175 24 1 1 174 643329435 643329609 2.000000e-42 183.0
9 TraesCS2B01G615900 chr2D 93.333 120 3 3 2902 3018 643331747 643331864 4.340000e-39 172.0
10 TraesCS2B01G615900 chr2D 87.619 105 8 2 708 812 643329765 643329864 2.060000e-22 117.0
11 TraesCS2B01G615900 chr2A 91.335 1558 97 20 820 2361 768256672 768258207 0.000000e+00 2095.0
12 TraesCS2B01G615900 chr2A 84.870 998 125 18 1117 2101 768267021 768266037 0.000000e+00 983.0
13 TraesCS2B01G615900 chr2A 78.095 945 178 24 1186 2122 768306705 768305782 3.660000e-159 571.0
14 TraesCS2B01G615900 chr2A 80.989 789 70 28 2364 3090 768258290 768259060 1.330000e-153 553.0
15 TraesCS2B01G615900 chr2A 93.590 78 3 2 2286 2361 768261162 768261239 7.420000e-22 115.0
16 TraesCS2B01G615900 chr2A 82.143 112 18 1 2539 2648 197225871 197225760 9.660000e-16 95.3
17 TraesCS2B01G615900 chr2A 100.000 49 0 0 2970 3018 768262035 768262083 1.250000e-14 91.6
18 TraesCS2B01G615900 chr2A 80.469 128 16 8 2625 2747 324413468 324413345 4.500000e-14 89.8
19 TraesCS2B01G615900 chr3A 86.007 879 111 10 1186 2058 667495155 667494283 0.000000e+00 931.0
20 TraesCS2B01G615900 chr3A 77.632 228 35 9 2542 2753 47224524 47224751 1.230000e-24 124.0
21 TraesCS2B01G615900 chr3D 83.915 945 116 19 1186 2122 532205693 532204777 0.000000e+00 870.0
22 TraesCS2B01G615900 chr3D 84.579 214 28 4 2539 2748 113818634 113818422 1.190000e-49 207.0
23 TraesCS2B01G615900 chr3B 84.571 875 130 5 1186 2058 704479125 704478254 0.000000e+00 863.0
24 TraesCS2B01G615900 chr3B 82.114 123 16 6 2627 2747 224883760 224883878 2.080000e-17 100.0
25 TraesCS2B01G615900 chr3B 78.571 154 20 12 2619 2765 371005613 371005466 4.500000e-14 89.8
26 TraesCS2B01G615900 chr1B 78.246 285 36 13 2465 2745 633965773 633965511 3.380000e-35 159.0
27 TraesCS2B01G615900 chr1B 88.608 79 9 0 2547 2625 649425965 649425887 2.690000e-16 97.1
28 TraesCS2B01G615900 chr4B 79.235 183 34 3 2544 2723 621096314 621096133 1.230000e-24 124.0
29 TraesCS2B01G615900 chr5D 77.889 199 37 7 2602 2796 50568756 50568561 2.060000e-22 117.0
30 TraesCS2B01G615900 chr5D 80.645 124 12 10 2627 2744 458378533 458378650 5.820000e-13 86.1
31 TraesCS2B01G615900 chr5B 84.071 113 14 3 2539 2648 13266442 13266331 4.460000e-19 106.0
32 TraesCS2B01G615900 chr1A 76.263 198 27 16 2619 2808 342705892 342705707 1.620000e-13 87.9
33 TraesCS2B01G615900 chr7D 80.488 123 14 8 2631 2747 66161415 66161297 5.820000e-13 86.1
34 TraesCS2B01G615900 chr1D 83.158 95 11 3 2544 2637 61327001 61327091 7.520000e-12 82.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G615900 chr2B 793516035 793519305 3270 True 2638.50 4846 100.0000 1 3271 2 chr2B.!!$R3 3270
1 TraesCS2B01G615900 chr2B 793505184 793506199 1015 True 992.00 992 84.4950 1117 2123 1 chr2B.!!$R2 1006
2 TraesCS2B01G615900 chr2B 793446051 793447017 966 True 540.00 540 77.2230 1138 2122 1 chr2B.!!$R1 984
3 TraesCS2B01G615900 chr2D 643435169 643436175 1006 False 1007.00 1007 84.8720 1117 2123 1 chr2D.!!$F1 1006
4 TraesCS2B01G615900 chr2D 643329435 643331864 2429 False 646.75 2115 89.4380 1 3018 4 chr2D.!!$F2 3017
5 TraesCS2B01G615900 chr2D 643467606 643468535 929 True 532.00 532 77.3820 1186 2128 1 chr2D.!!$R1 942
6 TraesCS2B01G615900 chr2A 768266037 768267021 984 True 983.00 983 84.8700 1117 2101 1 chr2A.!!$R3 984
7 TraesCS2B01G615900 chr2A 768256672 768262083 5411 False 713.65 2095 91.4785 820 3090 4 chr2A.!!$F1 2270
8 TraesCS2B01G615900 chr2A 768305782 768306705 923 True 571.00 571 78.0950 1186 2122 1 chr2A.!!$R4 936
9 TraesCS2B01G615900 chr3A 667494283 667495155 872 True 931.00 931 86.0070 1186 2058 1 chr3A.!!$R1 872
10 TraesCS2B01G615900 chr3D 532204777 532205693 916 True 870.00 870 83.9150 1186 2122 1 chr3D.!!$R2 936
11 TraesCS2B01G615900 chr3B 704478254 704479125 871 True 863.00 863 84.5710 1186 2058 1 chr3B.!!$R2 872

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
226 228 0.249911 ACTCTTCCCACAACTGTCGC 60.250 55.0 0.0 0.0 0.0 5.19 F
1059 1249 0.322456 GCCCTACACCATTGCACTCA 60.322 55.0 0.0 0.0 0.0 3.41 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1090 1280 0.244450 GCTGCTGCTTGCCATTGTTA 59.756 50.0 8.53 0.00 42.00 2.41 R
2336 2567 0.174845 TTCAATAGTGAGACCGGCCG 59.825 55.0 21.04 21.04 34.49 6.13 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
50 51 6.484364 AACAAATTTGGGTCTGTCAATTCT 57.516 33.333 21.74 0.00 0.00 2.40
59 60 3.141398 GTCTGTCAATTCTTGTGAGCCA 58.859 45.455 0.00 0.00 0.00 4.75
73 74 2.028876 TGAGCCATTGGATGCAAGATG 58.971 47.619 6.95 0.00 0.00 2.90
77 78 2.662866 CCATTGGATGCAAGATGGACT 58.337 47.619 12.87 0.00 41.20 3.85
83 84 1.412710 GATGCAAGATGGACTACCCGA 59.587 52.381 0.00 0.00 37.93 5.14
91 92 4.227197 AGATGGACTACCCGATCATCTTT 58.773 43.478 0.00 0.00 40.89 2.52
96 97 5.104527 TGGACTACCCGATCATCTTTTTCAT 60.105 40.000 0.00 0.00 37.93 2.57
106 108 4.905429 TCATCTTTTTCATCCTCCGAACA 58.095 39.130 0.00 0.00 0.00 3.18
111 113 6.472887 TCTTTTTCATCCTCCGAACAGTTAT 58.527 36.000 0.00 0.00 0.00 1.89
115 117 4.755411 TCATCCTCCGAACAGTTATTGTC 58.245 43.478 0.00 0.00 39.73 3.18
120 122 3.517602 TCCGAACAGTTATTGTCCATCG 58.482 45.455 0.00 0.00 39.73 3.84
132 134 1.967779 TGTCCATCGTCTTCAACCTCA 59.032 47.619 0.00 0.00 0.00 3.86
133 135 2.567169 TGTCCATCGTCTTCAACCTCAT 59.433 45.455 0.00 0.00 0.00 2.90
137 139 3.118775 CCATCGTCTTCAACCTCATACCA 60.119 47.826 0.00 0.00 0.00 3.25
138 140 4.443457 CCATCGTCTTCAACCTCATACCAT 60.443 45.833 0.00 0.00 0.00 3.55
141 143 3.118775 CGTCTTCAACCTCATACCATCCA 60.119 47.826 0.00 0.00 0.00 3.41
148 150 4.713792 ACCTCATACCATCCAATCTTCC 57.286 45.455 0.00 0.00 0.00 3.46
149 151 4.047166 ACCTCATACCATCCAATCTTCCA 58.953 43.478 0.00 0.00 0.00 3.53
159 161 2.158813 TCCAATCTTCCATCGGCCTAAC 60.159 50.000 0.00 0.00 0.00 2.34
167 169 1.526917 ATCGGCCTAACTGCATGCC 60.527 57.895 16.68 0.00 40.54 4.40
168 170 2.269520 ATCGGCCTAACTGCATGCCA 62.270 55.000 16.68 2.21 44.22 4.92
221 223 0.697854 ACCCCACTCTTCCCACAACT 60.698 55.000 0.00 0.00 0.00 3.16
223 225 0.474184 CCCACTCTTCCCACAACTGT 59.526 55.000 0.00 0.00 0.00 3.55
224 226 1.543429 CCCACTCTTCCCACAACTGTC 60.543 57.143 0.00 0.00 0.00 3.51
225 227 1.502231 CACTCTTCCCACAACTGTCG 58.498 55.000 0.00 0.00 0.00 4.35
226 228 0.249911 ACTCTTCCCACAACTGTCGC 60.250 55.000 0.00 0.00 0.00 5.19
227 229 0.951040 CTCTTCCCACAACTGTCGCC 60.951 60.000 0.00 0.00 0.00 5.54
229 231 2.674563 CTTCCCACAACTGTCGCCCA 62.675 60.000 0.00 0.00 0.00 5.36
232 234 2.390599 CCACAACTGTCGCCCATCG 61.391 63.158 0.00 0.00 40.15 3.84
668 670 1.514864 CCACCCCCAACACCCCTAAT 61.515 60.000 0.00 0.00 0.00 1.73
672 674 3.073946 CACCCCCAACACCCCTAATATAG 59.926 52.174 0.00 0.00 0.00 1.31
680 682 7.183839 CCCAACACCCCTAATATAGATTATGGA 59.816 40.741 11.68 0.00 36.09 3.41
689 691 9.386122 CCTAATATAGATTATGGAGCACCCTAT 57.614 37.037 0.00 0.00 35.38 2.57
694 696 1.729586 TATGGAGCACCCTATCACCC 58.270 55.000 0.00 0.00 35.38 4.61
713 715 4.357918 CCCTAAGGTGGATAATGAGGTG 57.642 50.000 0.00 0.00 0.00 4.00
716 718 0.469917 AGGTGGATAATGAGGTGGCG 59.530 55.000 0.00 0.00 0.00 5.69
717 719 0.468226 GGTGGATAATGAGGTGGCGA 59.532 55.000 0.00 0.00 0.00 5.54
718 720 1.541233 GGTGGATAATGAGGTGGCGAG 60.541 57.143 0.00 0.00 0.00 5.03
763 781 4.383880 GCCTCCTCCCTACGAAAATTAACT 60.384 45.833 0.00 0.00 0.00 2.24
769 787 3.619929 CCCTACGAAAATTAACTGACCCG 59.380 47.826 0.00 0.00 0.00 5.28
784 802 2.680841 TGACCCGAATTCTATTTTGCGG 59.319 45.455 3.52 0.00 38.54 5.69
785 803 1.404035 ACCCGAATTCTATTTTGCGGC 59.596 47.619 3.52 0.00 37.57 6.53
786 804 1.676006 CCCGAATTCTATTTTGCGGCT 59.324 47.619 3.52 0.00 37.57 5.52
787 805 2.099098 CCCGAATTCTATTTTGCGGCTT 59.901 45.455 3.52 0.00 37.57 4.35
804 822 4.621991 CGGCTTATGTCTAGCTATTGTGT 58.378 43.478 0.00 0.00 38.67 3.72
806 824 5.629849 CGGCTTATGTCTAGCTATTGTGTAC 59.370 44.000 0.00 0.00 38.67 2.90
903 1083 2.695666 AGCTATAGTCACCTTCACGCAT 59.304 45.455 0.84 0.00 0.00 4.73
929 1115 0.601046 TTCTCTGTGACGCTGCCTTG 60.601 55.000 0.00 0.00 0.00 3.61
953 1139 3.841925 TATTTCGGCGCACATGCATGC 62.842 52.381 26.53 14.55 42.21 4.06
1017 1203 4.385825 TCCGGTTATAAATGATGCTCACC 58.614 43.478 0.00 0.00 0.00 4.02
1059 1249 0.322456 GCCCTACACCATTGCACTCA 60.322 55.000 0.00 0.00 0.00 3.41
1090 1280 1.071385 CTCAAGCTCAAGGTCCACACT 59.929 52.381 0.00 0.00 0.00 3.55
1100 1290 1.423541 AGGTCCACACTAACAATGGCA 59.576 47.619 0.00 0.00 33.20 4.92
1556 1755 2.992114 AACCTCGACAGCCTCGCT 60.992 61.111 0.00 0.00 42.62 4.93
1847 2046 1.001181 GACAACGGGTACTACAAGGCA 59.999 52.381 0.00 0.00 0.00 4.75
1850 2049 0.893447 ACGGGTACTACAAGGCACTC 59.107 55.000 0.00 0.00 38.49 3.51
1963 2162 0.319641 GCCTTCTTCGGACAGTTCGT 60.320 55.000 0.00 0.00 0.00 3.85
2052 2251 3.423154 GCTTGAGGACCAACGCCG 61.423 66.667 0.00 0.00 0.00 6.46
2077 2276 2.337749 ATCGTCCTGATCGACACCGC 62.338 60.000 0.00 0.00 40.07 5.68
2159 2385 2.124983 CGGCCAGCATGCAGTACT 60.125 61.111 21.98 0.00 31.97 2.73
2160 2386 1.746615 CGGCCAGCATGCAGTACTT 60.747 57.895 21.98 0.00 31.97 2.24
2203 2429 1.891060 GCGTGTAGTGCACTGCTGTC 61.891 60.000 30.93 20.59 45.57 3.51
2251 2482 4.565022 AGGGTTTGTGTTGACTGTTTTTG 58.435 39.130 0.00 0.00 0.00 2.44
2252 2483 4.039852 AGGGTTTGTGTTGACTGTTTTTGT 59.960 37.500 0.00 0.00 0.00 2.83
2253 2484 4.387559 GGGTTTGTGTTGACTGTTTTTGTC 59.612 41.667 0.00 0.00 35.21 3.18
2254 2485 4.089351 GGTTTGTGTTGACTGTTTTTGTCG 59.911 41.667 0.00 0.00 37.26 4.35
2255 2486 2.857618 TGTGTTGACTGTTTTTGTCGC 58.142 42.857 0.00 0.00 37.26 5.19
2256 2487 1.837747 GTGTTGACTGTTTTTGTCGCG 59.162 47.619 0.00 0.00 37.26 5.87
2257 2488 1.465387 TGTTGACTGTTTTTGTCGCGT 59.535 42.857 5.77 0.00 37.26 6.01
2259 2490 2.166741 TGACTGTTTTTGTCGCGTTG 57.833 45.000 5.77 0.00 37.26 4.10
2260 2491 1.465387 TGACTGTTTTTGTCGCGTTGT 59.535 42.857 5.77 0.00 37.26 3.32
2261 2492 2.671888 TGACTGTTTTTGTCGCGTTGTA 59.328 40.909 5.77 0.00 37.26 2.41
2262 2493 3.024313 GACTGTTTTTGTCGCGTTGTAC 58.976 45.455 5.77 0.00 0.00 2.90
2263 2494 2.674357 ACTGTTTTTGTCGCGTTGTACT 59.326 40.909 5.77 0.00 0.00 2.73
2279 2510 9.322776 CGCGTTGTACTAGTAGTAATAATAAGG 57.677 37.037 11.64 4.12 31.62 2.69
2330 2561 7.602265 TGTCATCGAGAAATGTTTGTAGATTCA 59.398 33.333 0.00 0.00 0.00 2.57
2334 2565 7.742151 TCGAGAAATGTTTGTAGATTCACATG 58.258 34.615 0.00 0.00 30.15 3.21
2335 2566 6.467047 CGAGAAATGTTTGTAGATTCACATGC 59.533 38.462 0.00 0.00 30.15 4.06
2336 2567 6.624423 AGAAATGTTTGTAGATTCACATGCC 58.376 36.000 0.00 0.00 30.15 4.40
2337 2568 4.621068 ATGTTTGTAGATTCACATGCCG 57.379 40.909 0.00 0.00 0.00 5.69
2361 2592 4.745620 GCCGGTCTCACTATTGAAATCTAC 59.254 45.833 1.90 0.00 0.00 2.59
2362 2593 5.681437 GCCGGTCTCACTATTGAAATCTACA 60.681 44.000 1.90 0.00 0.00 2.74
2419 2809 5.698832 ACCATGTATTTTGACGTGTTCATG 58.301 37.500 0.00 0.00 35.00 3.07
2420 2810 5.471797 ACCATGTATTTTGACGTGTTCATGA 59.528 36.000 0.00 0.00 35.00 3.07
2430 2820 1.202110 CGTGTTCATGAATGCAGGAGC 60.202 52.381 12.12 0.00 36.06 4.70
2436 2826 1.944709 CATGAATGCAGGAGCGATGAA 59.055 47.619 0.00 0.00 46.23 2.57
2438 2828 2.435422 TGAATGCAGGAGCGATGAAAA 58.565 42.857 0.00 0.00 46.23 2.29
2464 2884 3.058129 CGCTGCTCGCTATTTTGTTTTTC 59.942 43.478 0.00 0.00 36.13 2.29
2466 2886 4.089065 GCTGCTCGCTATTTTGTTTTTCAG 59.911 41.667 0.00 0.00 35.14 3.02
2467 2887 3.980775 TGCTCGCTATTTTGTTTTTCAGC 59.019 39.130 0.00 0.00 0.00 4.26
2507 2927 5.808030 TCAACTGAATTTTCGTTTTTGGGTC 59.192 36.000 0.00 0.00 0.00 4.46
2524 2944 2.618053 GGTCGGTCGATTTTGAGTGAT 58.382 47.619 0.00 0.00 0.00 3.06
2530 2950 3.375299 GGTCGATTTTGAGTGATGGAAGG 59.625 47.826 0.00 0.00 0.00 3.46
2532 2952 4.695455 GTCGATTTTGAGTGATGGAAGGAA 59.305 41.667 0.00 0.00 0.00 3.36
2542 2962 1.827344 GATGGAAGGAAAAGGCAAGGG 59.173 52.381 0.00 0.00 0.00 3.95
2556 2976 1.561542 GCAAGGGAGGAGAAGGAATGA 59.438 52.381 0.00 0.00 0.00 2.57
2558 2978 1.886422 AGGGAGGAGAAGGAATGACC 58.114 55.000 0.00 0.00 39.35 4.02
2600 3020 0.179067 TCGCCGTTATCACCCCATTC 60.179 55.000 0.00 0.00 0.00 2.67
2613 3033 5.982391 TCACCCCATTCTCTATCTTAGGAT 58.018 41.667 0.00 0.00 36.07 3.24
2615 3035 6.270927 TCACCCCATTCTCTATCTTAGGATTG 59.729 42.308 0.00 0.00 33.71 2.67
2622 3042 6.985653 TCTCTATCTTAGGATTGAAGGTGG 57.014 41.667 0.00 0.00 34.43 4.61
2625 3045 3.214694 TCTTAGGATTGAAGGTGGGGA 57.785 47.619 0.00 0.00 0.00 4.81
2626 3046 2.844348 TCTTAGGATTGAAGGTGGGGAC 59.156 50.000 0.00 0.00 0.00 4.46
2628 3048 1.077716 GGATTGAAGGTGGGGACGG 60.078 63.158 0.00 0.00 0.00 4.79
2629 3049 1.749258 GATTGAAGGTGGGGACGGC 60.749 63.158 0.00 0.00 0.00 5.68
2630 3050 3.622060 ATTGAAGGTGGGGACGGCG 62.622 63.158 4.80 4.80 0.00 6.46
2658 3078 4.410400 GGTGGGGCTTCACCGGAG 62.410 72.222 9.46 0.00 46.31 4.63
2659 3079 3.637273 GTGGGGCTTCACCGGAGT 61.637 66.667 9.46 0.00 40.62 3.85
2665 3086 1.810755 GGGCTTCACCGGAGTAAAAAG 59.189 52.381 9.46 0.36 40.62 2.27
2668 3089 3.557686 GGCTTCACCGGAGTAAAAAGGTA 60.558 47.826 9.46 0.00 34.83 3.08
2690 3111 4.860881 CAGGCGGGGCTAGAGGGA 62.861 72.222 0.00 0.00 0.00 4.20
2691 3112 3.851184 AGGCGGGGCTAGAGGGAT 61.851 66.667 0.00 0.00 0.00 3.85
2693 3114 3.631046 GCGGGGCTAGAGGGATGG 61.631 72.222 0.00 0.00 0.00 3.51
2695 3116 3.253061 GGGGCTAGAGGGATGGCC 61.253 72.222 0.00 0.00 45.59 5.36
2731 3152 2.438434 GCGGTGGGGAGATGTTGG 60.438 66.667 0.00 0.00 0.00 3.77
2841 3298 6.203145 CGTTCGAGGTAGAAGAGATAATCTGA 59.797 42.308 0.00 0.00 38.67 3.27
2845 3302 6.072230 CGAGGTAGAAGAGATAATCTGATGCA 60.072 42.308 0.00 0.00 38.67 3.96
2849 3306 8.093307 GGTAGAAGAGATAATCTGATGCATTCA 58.907 37.037 0.00 0.00 38.67 2.57
2903 3384 0.631212 CCCCAGTAGCCATTCCCTTT 59.369 55.000 0.00 0.00 0.00 3.11
3018 6582 3.668447 TCAAGGTGCAGAAGAAGATGTC 58.332 45.455 0.00 0.00 0.00 3.06
3019 6583 2.746362 CAAGGTGCAGAAGAAGATGTCC 59.254 50.000 0.00 0.00 0.00 4.02
3020 6584 1.066573 AGGTGCAGAAGAAGATGTCCG 60.067 52.381 0.00 0.00 0.00 4.79
3021 6585 1.066858 GGTGCAGAAGAAGATGTCCGA 60.067 52.381 0.00 0.00 0.00 4.55
3022 6586 2.419297 GGTGCAGAAGAAGATGTCCGAT 60.419 50.000 0.00 0.00 0.00 4.18
3023 6587 2.863137 GTGCAGAAGAAGATGTCCGATC 59.137 50.000 0.00 0.00 0.00 3.69
3024 6588 2.497273 TGCAGAAGAAGATGTCCGATCA 59.503 45.455 0.00 0.00 0.00 2.92
3025 6589 2.863137 GCAGAAGAAGATGTCCGATCAC 59.137 50.000 0.00 0.00 0.00 3.06
3026 6590 3.111838 CAGAAGAAGATGTCCGATCACG 58.888 50.000 0.00 0.00 39.43 4.35
3038 6602 2.596904 CGATCACGGGGATGTACTTT 57.403 50.000 0.00 0.00 36.00 2.66
3039 6603 2.201732 CGATCACGGGGATGTACTTTG 58.798 52.381 0.00 0.00 36.00 2.77
3040 6604 2.159156 CGATCACGGGGATGTACTTTGA 60.159 50.000 0.00 0.00 36.00 2.69
3041 6605 3.458189 GATCACGGGGATGTACTTTGAG 58.542 50.000 0.00 0.00 36.00 3.02
3042 6606 1.066430 TCACGGGGATGTACTTTGAGC 60.066 52.381 0.00 0.00 0.00 4.26
3043 6607 1.066143 CACGGGGATGTACTTTGAGCT 60.066 52.381 0.00 0.00 0.00 4.09
3044 6608 1.628846 ACGGGGATGTACTTTGAGCTT 59.371 47.619 0.00 0.00 0.00 3.74
3045 6609 2.009774 CGGGGATGTACTTTGAGCTTG 58.990 52.381 0.00 0.00 0.00 4.01
3046 6610 2.615493 CGGGGATGTACTTTGAGCTTGT 60.615 50.000 0.00 0.00 0.00 3.16
3047 6611 2.749621 GGGGATGTACTTTGAGCTTGTG 59.250 50.000 0.00 0.00 0.00 3.33
3048 6612 3.559171 GGGGATGTACTTTGAGCTTGTGA 60.559 47.826 0.00 0.00 0.00 3.58
3049 6613 4.072131 GGGATGTACTTTGAGCTTGTGAA 58.928 43.478 0.00 0.00 0.00 3.18
3050 6614 4.083271 GGGATGTACTTTGAGCTTGTGAAC 60.083 45.833 0.00 0.00 0.00 3.18
3051 6615 4.515191 GGATGTACTTTGAGCTTGTGAACA 59.485 41.667 0.00 0.00 0.00 3.18
3052 6616 5.008613 GGATGTACTTTGAGCTTGTGAACAA 59.991 40.000 0.00 0.00 0.00 2.83
3053 6617 5.229921 TGTACTTTGAGCTTGTGAACAAC 57.770 39.130 0.00 0.00 0.00 3.32
3054 6618 4.941263 TGTACTTTGAGCTTGTGAACAACT 59.059 37.500 0.00 0.00 0.00 3.16
3055 6619 5.414454 TGTACTTTGAGCTTGTGAACAACTT 59.586 36.000 0.00 0.00 0.00 2.66
3056 6620 4.737054 ACTTTGAGCTTGTGAACAACTTG 58.263 39.130 0.00 0.00 0.00 3.16
3057 6621 3.781079 TTGAGCTTGTGAACAACTTGG 57.219 42.857 0.00 0.00 0.00 3.61
3058 6622 1.405105 TGAGCTTGTGAACAACTTGGC 59.595 47.619 0.00 0.00 0.00 4.52
3059 6623 0.746659 AGCTTGTGAACAACTTGGCC 59.253 50.000 0.00 0.00 0.00 5.36
3060 6624 0.594796 GCTTGTGAACAACTTGGCCG 60.595 55.000 0.00 0.00 0.00 6.13
3061 6625 1.021202 CTTGTGAACAACTTGGCCGA 58.979 50.000 0.00 0.00 0.00 5.54
3062 6626 1.403679 CTTGTGAACAACTTGGCCGAA 59.596 47.619 0.00 0.00 0.00 4.30
3063 6627 1.686355 TGTGAACAACTTGGCCGAAT 58.314 45.000 0.00 0.00 0.00 3.34
3064 6628 1.606668 TGTGAACAACTTGGCCGAATC 59.393 47.619 0.00 0.00 0.00 2.52
3065 6629 0.871722 TGAACAACTTGGCCGAATCG 59.128 50.000 0.00 0.00 0.00 3.34
3066 6630 1.153353 GAACAACTTGGCCGAATCGA 58.847 50.000 3.36 0.00 0.00 3.59
3067 6631 1.128692 GAACAACTTGGCCGAATCGAG 59.871 52.381 3.36 0.00 0.00 4.04
3068 6632 0.673644 ACAACTTGGCCGAATCGAGG 60.674 55.000 3.36 0.00 0.00 4.63
3069 6633 0.391130 CAACTTGGCCGAATCGAGGA 60.391 55.000 3.36 0.00 0.00 3.71
3070 6634 0.323629 AACTTGGCCGAATCGAGGAA 59.676 50.000 3.36 0.00 0.00 3.36
3071 6635 0.323629 ACTTGGCCGAATCGAGGAAA 59.676 50.000 3.36 0.00 0.00 3.13
3072 6636 1.271163 ACTTGGCCGAATCGAGGAAAA 60.271 47.619 3.36 0.00 0.00 2.29
3073 6637 2.017049 CTTGGCCGAATCGAGGAAAAT 58.983 47.619 3.36 0.00 0.00 1.82
3074 6638 1.378531 TGGCCGAATCGAGGAAAATG 58.621 50.000 3.36 0.00 0.00 2.32
3075 6639 1.339631 TGGCCGAATCGAGGAAAATGT 60.340 47.619 3.36 0.00 0.00 2.71
3076 6640 1.330829 GGCCGAATCGAGGAAAATGTC 59.669 52.381 3.36 0.00 0.00 3.06
3086 6650 0.028110 GGAAAATGTCCGATCGCTGC 59.972 55.000 10.32 2.15 36.40 5.25
3087 6651 0.028110 GAAAATGTCCGATCGCTGCC 59.972 55.000 10.32 0.00 0.00 4.85
3088 6652 0.676466 AAAATGTCCGATCGCTGCCA 60.676 50.000 10.32 3.15 0.00 4.92
3089 6653 0.464373 AAATGTCCGATCGCTGCCAT 60.464 50.000 10.32 5.47 0.00 4.40
3090 6654 0.464373 AATGTCCGATCGCTGCCATT 60.464 50.000 10.32 11.08 0.00 3.16
3091 6655 0.882042 ATGTCCGATCGCTGCCATTC 60.882 55.000 10.32 0.00 0.00 2.67
3092 6656 1.227380 GTCCGATCGCTGCCATTCT 60.227 57.895 10.32 0.00 0.00 2.40
3093 6657 0.811616 GTCCGATCGCTGCCATTCTT 60.812 55.000 10.32 0.00 0.00 2.52
3094 6658 0.107703 TCCGATCGCTGCCATTCTTT 60.108 50.000 10.32 0.00 0.00 2.52
3095 6659 0.734889 CCGATCGCTGCCATTCTTTT 59.265 50.000 10.32 0.00 0.00 2.27
3096 6660 1.133025 CCGATCGCTGCCATTCTTTTT 59.867 47.619 10.32 0.00 0.00 1.94
3128 6692 2.074576 GGTTAAAACCCTCGTCTCTGC 58.925 52.381 0.02 0.00 43.43 4.26
3129 6693 2.549349 GGTTAAAACCCTCGTCTCTGCA 60.549 50.000 0.02 0.00 43.43 4.41
3130 6694 3.335579 GTTAAAACCCTCGTCTCTGCAT 58.664 45.455 0.00 0.00 0.00 3.96
3131 6695 2.100605 AAAACCCTCGTCTCTGCATC 57.899 50.000 0.00 0.00 0.00 3.91
3132 6696 0.976641 AAACCCTCGTCTCTGCATCA 59.023 50.000 0.00 0.00 0.00 3.07
3133 6697 0.976641 AACCCTCGTCTCTGCATCAA 59.023 50.000 0.00 0.00 0.00 2.57
3134 6698 1.198713 ACCCTCGTCTCTGCATCAAT 58.801 50.000 0.00 0.00 0.00 2.57
3135 6699 1.137872 ACCCTCGTCTCTGCATCAATC 59.862 52.381 0.00 0.00 0.00 2.67
3136 6700 1.485397 CCTCGTCTCTGCATCAATCG 58.515 55.000 0.00 0.00 0.00 3.34
3137 6701 1.066152 CCTCGTCTCTGCATCAATCGA 59.934 52.381 0.00 0.00 0.00 3.59
3138 6702 2.288091 CCTCGTCTCTGCATCAATCGAT 60.288 50.000 0.00 0.00 0.00 3.59
3153 6717 8.070007 CATCAATCGATGCATATACATCTACC 57.930 38.462 12.98 0.00 42.54 3.18
3154 6718 7.410120 TCAATCGATGCATATACATCTACCT 57.590 36.000 12.98 0.00 43.54 3.08
3155 6719 7.840931 TCAATCGATGCATATACATCTACCTT 58.159 34.615 12.98 0.69 43.54 3.50
3156 6720 8.314021 TCAATCGATGCATATACATCTACCTTT 58.686 33.333 12.98 0.00 43.54 3.11
3157 6721 9.586435 CAATCGATGCATATACATCTACCTTTA 57.414 33.333 12.98 0.00 43.54 1.85
3188 6752 9.567776 TTATTAAACAAAGATCTGACAAGGACA 57.432 29.630 0.00 0.00 0.00 4.02
3189 6753 8.641498 ATTAAACAAAGATCTGACAAGGACAT 57.359 30.769 0.00 0.00 0.00 3.06
3190 6754 9.739276 ATTAAACAAAGATCTGACAAGGACATA 57.261 29.630 0.00 0.00 0.00 2.29
3191 6755 9.739276 TTAAACAAAGATCTGACAAGGACATAT 57.261 29.630 0.00 0.00 0.00 1.78
3193 6757 9.911788 AAACAAAGATCTGACAAGGACATATAT 57.088 29.630 0.00 0.00 0.00 0.86
3194 6758 9.553064 AACAAAGATCTGACAAGGACATATATC 57.447 33.333 0.00 0.00 0.00 1.63
3195 6759 8.708378 ACAAAGATCTGACAAGGACATATATCA 58.292 33.333 0.00 0.00 0.00 2.15
3196 6760 9.205719 CAAAGATCTGACAAGGACATATATCAG 57.794 37.037 0.00 0.00 35.87 2.90
3197 6761 7.479352 AGATCTGACAAGGACATATATCAGG 57.521 40.000 0.00 0.00 35.38 3.86
3198 6762 5.474578 TCTGACAAGGACATATATCAGGC 57.525 43.478 0.00 0.00 35.38 4.85
3199 6763 4.284490 TCTGACAAGGACATATATCAGGCC 59.716 45.833 0.00 0.00 35.38 5.19
3200 6764 4.234550 TGACAAGGACATATATCAGGCCT 58.765 43.478 0.00 0.00 0.00 5.19
3201 6765 5.402630 TGACAAGGACATATATCAGGCCTA 58.597 41.667 3.98 0.00 0.00 3.93
3202 6766 5.246203 TGACAAGGACATATATCAGGCCTAC 59.754 44.000 3.98 0.00 0.00 3.18
3203 6767 5.155161 ACAAGGACATATATCAGGCCTACA 58.845 41.667 3.98 0.00 0.00 2.74
3204 6768 5.606749 ACAAGGACATATATCAGGCCTACAA 59.393 40.000 3.98 0.00 0.00 2.41
3205 6769 6.101150 ACAAGGACATATATCAGGCCTACAAA 59.899 38.462 3.98 0.00 0.00 2.83
3206 6770 6.959606 AGGACATATATCAGGCCTACAAAT 57.040 37.500 3.98 0.00 0.00 2.32
3207 6771 7.335127 AGGACATATATCAGGCCTACAAATT 57.665 36.000 3.98 0.00 0.00 1.82
3208 6772 7.398024 AGGACATATATCAGGCCTACAAATTC 58.602 38.462 3.98 0.00 0.00 2.17
3209 6773 6.313905 GGACATATATCAGGCCTACAAATTCG 59.686 42.308 3.98 0.00 0.00 3.34
3210 6774 7.004555 ACATATATCAGGCCTACAAATTCGA 57.995 36.000 3.98 0.00 0.00 3.71
3211 6775 7.624549 ACATATATCAGGCCTACAAATTCGAT 58.375 34.615 3.98 3.80 0.00 3.59
3212 6776 8.758829 ACATATATCAGGCCTACAAATTCGATA 58.241 33.333 3.98 6.27 0.00 2.92
3213 6777 9.599866 CATATATCAGGCCTACAAATTCGATAA 57.400 33.333 3.98 0.00 0.00 1.75
3215 6779 6.808008 ATCAGGCCTACAAATTCGATAATG 57.192 37.500 3.98 0.00 0.00 1.90
3216 6780 5.680619 TCAGGCCTACAAATTCGATAATGT 58.319 37.500 3.98 0.00 0.00 2.71
3217 6781 5.527214 TCAGGCCTACAAATTCGATAATGTG 59.473 40.000 3.98 0.00 36.52 3.21
3218 6782 5.527214 CAGGCCTACAAATTCGATAATGTGA 59.473 40.000 3.98 0.00 34.41 3.58
3219 6783 6.038161 CAGGCCTACAAATTCGATAATGTGAA 59.962 38.462 3.98 0.00 34.41 3.18
3220 6784 6.260936 AGGCCTACAAATTCGATAATGTGAAG 59.739 38.462 1.29 0.00 34.41 3.02
3221 6785 6.038271 GGCCTACAAATTCGATAATGTGAAGT 59.962 38.462 0.00 0.00 34.41 3.01
3222 6786 6.907212 GCCTACAAATTCGATAATGTGAAGTG 59.093 38.462 7.50 0.00 34.41 3.16
3223 6787 7.201609 GCCTACAAATTCGATAATGTGAAGTGA 60.202 37.037 7.50 0.00 34.41 3.41
3224 6788 8.830580 CCTACAAATTCGATAATGTGAAGTGAT 58.169 33.333 7.50 0.00 34.41 3.06
3225 6789 9.855361 CTACAAATTCGATAATGTGAAGTGATC 57.145 33.333 7.50 0.00 34.41 2.92
3226 6790 8.498054 ACAAATTCGATAATGTGAAGTGATCT 57.502 30.769 0.00 0.00 34.41 2.75
3227 6791 8.607459 ACAAATTCGATAATGTGAAGTGATCTC 58.393 33.333 0.00 0.00 34.41 2.75
3228 6792 8.606602 CAAATTCGATAATGTGAAGTGATCTCA 58.393 33.333 0.00 0.00 32.75 3.27
3229 6793 7.706281 ATTCGATAATGTGAAGTGATCTCAC 57.294 36.000 6.63 6.63 46.77 3.51
3240 6804 3.932545 GTGATCTCACTCCGCATATCT 57.067 47.619 3.07 0.00 43.25 1.98
3242 6806 5.378292 GTGATCTCACTCCGCATATCTAA 57.622 43.478 3.07 0.00 43.25 2.10
3243 6807 5.773575 GTGATCTCACTCCGCATATCTAAA 58.226 41.667 3.07 0.00 43.25 1.85
3244 6808 6.216569 GTGATCTCACTCCGCATATCTAAAA 58.783 40.000 3.07 0.00 43.25 1.52
3245 6809 6.870965 GTGATCTCACTCCGCATATCTAAAAT 59.129 38.462 3.07 0.00 43.25 1.82
3246 6810 7.062839 GTGATCTCACTCCGCATATCTAAAATC 59.937 40.741 3.07 0.00 43.25 2.17
3247 6811 5.461526 TCTCACTCCGCATATCTAAAATCG 58.538 41.667 0.00 0.00 0.00 3.34
3248 6812 4.556233 TCACTCCGCATATCTAAAATCGG 58.444 43.478 0.00 0.00 38.34 4.18
3249 6813 4.038763 TCACTCCGCATATCTAAAATCGGT 59.961 41.667 0.00 0.00 38.18 4.69
3250 6814 5.242171 TCACTCCGCATATCTAAAATCGGTA 59.758 40.000 0.00 0.00 38.18 4.02
3251 6815 6.071560 TCACTCCGCATATCTAAAATCGGTAT 60.072 38.462 0.00 0.00 38.18 2.73
3252 6816 6.253727 CACTCCGCATATCTAAAATCGGTATC 59.746 42.308 0.00 0.00 38.18 2.24
3253 6817 5.337554 TCCGCATATCTAAAATCGGTATCG 58.662 41.667 0.00 0.00 38.18 2.92
3254 6818 5.100259 CCGCATATCTAAAATCGGTATCGT 58.900 41.667 0.00 0.00 37.69 3.73
3255 6819 5.229469 CCGCATATCTAAAATCGGTATCGTC 59.771 44.000 0.00 0.00 37.69 4.20
3256 6820 5.053221 CGCATATCTAAAATCGGTATCGTCG 60.053 44.000 0.00 0.00 37.69 5.12
3257 6821 5.275788 GCATATCTAAAATCGGTATCGTCGC 60.276 44.000 0.00 0.00 37.69 5.19
3258 6822 3.976793 TCTAAAATCGGTATCGTCGCT 57.023 42.857 0.00 0.00 37.69 4.93
3259 6823 3.624900 TCTAAAATCGGTATCGTCGCTG 58.375 45.455 0.00 0.00 37.69 5.18
3260 6824 2.572191 AAAATCGGTATCGTCGCTGA 57.428 45.000 0.00 0.00 37.69 4.26
3261 6825 2.795175 AAATCGGTATCGTCGCTGAT 57.205 45.000 0.00 0.00 37.69 2.90
3262 6826 2.333389 AATCGGTATCGTCGCTGATC 57.667 50.000 0.00 0.00 37.69 2.92
3263 6827 0.522180 ATCGGTATCGTCGCTGATCC 59.478 55.000 0.00 0.00 37.69 3.36
3264 6828 0.816421 TCGGTATCGTCGCTGATCCA 60.816 55.000 0.00 0.00 37.69 3.41
3265 6829 0.241213 CGGTATCGTCGCTGATCCAT 59.759 55.000 0.00 0.00 0.00 3.41
3266 6830 1.729472 CGGTATCGTCGCTGATCCATC 60.729 57.143 0.00 0.00 0.00 3.51
3267 6831 1.402984 GGTATCGTCGCTGATCCATCC 60.403 57.143 0.00 0.00 0.00 3.51
3268 6832 0.521735 TATCGTCGCTGATCCATCCG 59.478 55.000 0.00 0.00 0.00 4.18
3269 6833 2.755542 ATCGTCGCTGATCCATCCGC 62.756 60.000 0.00 0.00 34.26 5.54
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
45 46 3.118884 GCATCCAATGGCTCACAAGAATT 60.119 43.478 0.00 0.00 0.00 2.17
50 51 1.546923 CTTGCATCCAATGGCTCACAA 59.453 47.619 0.00 0.00 0.00 3.33
59 60 3.435601 GGGTAGTCCATCTTGCATCCAAT 60.436 47.826 0.00 0.00 35.00 3.16
73 74 4.766375 TGAAAAAGATGATCGGGTAGTCC 58.234 43.478 0.00 0.00 0.00 3.85
77 78 5.454755 GGAGGATGAAAAAGATGATCGGGTA 60.455 44.000 0.00 0.00 0.00 3.69
83 84 5.500234 TGTTCGGAGGATGAAAAAGATGAT 58.500 37.500 0.00 0.00 0.00 2.45
91 92 5.556915 ACAATAACTGTTCGGAGGATGAAA 58.443 37.500 0.00 0.00 32.99 2.69
96 97 2.901192 TGGACAATAACTGTTCGGAGGA 59.099 45.455 0.00 0.00 38.84 3.71
106 108 4.935808 GGTTGAAGACGATGGACAATAACT 59.064 41.667 0.00 0.00 0.00 2.24
111 113 2.367241 TGAGGTTGAAGACGATGGACAA 59.633 45.455 0.00 0.00 0.00 3.18
115 117 3.118775 TGGTATGAGGTTGAAGACGATGG 60.119 47.826 0.00 0.00 0.00 3.51
120 122 4.487714 TGGATGGTATGAGGTTGAAGAC 57.512 45.455 0.00 0.00 0.00 3.01
132 134 3.560025 GCCGATGGAAGATTGGATGGTAT 60.560 47.826 0.00 0.00 0.00 2.73
133 135 2.224523 GCCGATGGAAGATTGGATGGTA 60.225 50.000 0.00 0.00 0.00 3.25
137 139 1.143813 AGGCCGATGGAAGATTGGAT 58.856 50.000 0.00 0.00 0.00 3.41
138 140 1.801242 TAGGCCGATGGAAGATTGGA 58.199 50.000 0.00 0.00 0.00 3.53
141 143 2.746472 GCAGTTAGGCCGATGGAAGATT 60.746 50.000 0.00 0.00 0.00 2.40
148 150 1.650912 GCATGCAGTTAGGCCGATG 59.349 57.895 14.21 0.00 0.00 3.84
149 151 1.526917 GGCATGCAGTTAGGCCGAT 60.527 57.895 21.36 0.00 37.81 4.18
188 190 4.446413 GGGTGGTGTCCGCGGTAG 62.446 72.222 27.15 0.00 34.37 3.18
193 195 4.699522 GAGTGGGGTGGTGTCCGC 62.700 72.222 0.00 0.00 40.24 5.54
194 196 2.450479 GAAGAGTGGGGTGGTGTCCG 62.450 65.000 0.00 0.00 0.00 4.79
195 197 1.375326 GAAGAGTGGGGTGGTGTCC 59.625 63.158 0.00 0.00 0.00 4.02
196 198 1.375326 GGAAGAGTGGGGTGGTGTC 59.625 63.158 0.00 0.00 0.00 3.67
197 199 2.154074 GGGAAGAGTGGGGTGGTGT 61.154 63.158 0.00 0.00 0.00 4.16
198 200 2.153401 TGGGAAGAGTGGGGTGGTG 61.153 63.158 0.00 0.00 0.00 4.17
199 201 2.154074 GTGGGAAGAGTGGGGTGGT 61.154 63.158 0.00 0.00 0.00 4.16
200 202 1.715019 TTGTGGGAAGAGTGGGGTGG 61.715 60.000 0.00 0.00 0.00 4.61
201 203 0.537371 GTTGTGGGAAGAGTGGGGTG 60.537 60.000 0.00 0.00 0.00 4.61
202 204 0.697854 AGTTGTGGGAAGAGTGGGGT 60.698 55.000 0.00 0.00 0.00 4.95
207 209 0.249911 GCGACAGTTGTGGGAAGAGT 60.250 55.000 0.00 0.00 0.00 3.24
209 211 1.070786 GGCGACAGTTGTGGGAAGA 59.929 57.895 0.00 0.00 0.00 2.87
650 652 1.300927 TATTAGGGGTGTTGGGGGTG 58.699 55.000 0.00 0.00 0.00 4.61
655 657 8.158025 TCCATAATCTATATTAGGGGTGTTGG 57.842 38.462 10.57 1.49 45.52 3.77
662 664 6.617371 AGGGTGCTCCATAATCTATATTAGGG 59.383 42.308 7.20 5.44 46.40 3.53
668 670 6.611642 GGTGATAGGGTGCTCCATAATCTATA 59.388 42.308 7.20 0.00 38.24 1.31
672 674 3.307762 GGGTGATAGGGTGCTCCATAATC 60.308 52.174 7.20 6.72 38.24 1.75
680 682 1.009675 ACCTTAGGGTGATAGGGTGCT 59.990 52.381 2.32 0.00 45.43 4.40
694 696 3.744660 GCCACCTCATTATCCACCTTAG 58.255 50.000 0.00 0.00 0.00 2.18
701 703 1.871080 CACTCGCCACCTCATTATCC 58.129 55.000 0.00 0.00 0.00 2.59
709 711 1.004440 GAAGAAGCACTCGCCACCT 60.004 57.895 0.00 0.00 39.83 4.00
713 715 1.021920 GGAAGGAAGAAGCACTCGCC 61.022 60.000 0.00 0.00 39.83 5.54
716 718 1.404851 CGAGGGAAGGAAGAAGCACTC 60.405 57.143 0.00 0.00 0.00 3.51
717 719 0.610687 CGAGGGAAGGAAGAAGCACT 59.389 55.000 0.00 0.00 0.00 4.40
718 720 0.391793 CCGAGGGAAGGAAGAAGCAC 60.392 60.000 0.00 0.00 0.00 4.40
747 765 3.619929 CGGGTCAGTTAATTTTCGTAGGG 59.380 47.826 0.00 0.00 0.00 3.53
748 766 4.497300 TCGGGTCAGTTAATTTTCGTAGG 58.503 43.478 0.00 0.00 0.00 3.18
763 781 2.680841 CCGCAAAATAGAATTCGGGTCA 59.319 45.455 0.00 0.00 33.85 4.02
769 787 6.729187 AGACATAAGCCGCAAAATAGAATTC 58.271 36.000 0.00 0.00 0.00 2.17
784 802 7.707035 ACTTGTACACAATAGCTAGACATAAGC 59.293 37.037 0.00 0.00 36.38 3.09
840 1019 7.175104 TGCTGAGTTTAAATTTGTCCTATCCT 58.825 34.615 0.00 0.00 0.00 3.24
855 1034 2.568956 AGCCTCTCACATGCTGAGTTTA 59.431 45.455 18.61 5.59 46.09 2.01
929 1115 2.159430 TGCATGTGCGCCGAAATATATC 59.841 45.455 4.18 0.00 45.83 1.63
953 1139 0.598562 ACAGACAGTCACGCACTAGG 59.401 55.000 2.66 0.00 32.21 3.02
1034 1224 0.527565 CAATGGTGTAGGGCTTGTGC 59.472 55.000 0.00 0.00 38.76 4.57
1044 1234 3.221771 AGCTTTTGAGTGCAATGGTGTA 58.778 40.909 0.00 0.00 33.25 2.90
1045 1235 2.034124 AGCTTTTGAGTGCAATGGTGT 58.966 42.857 0.00 0.00 33.25 4.16
1082 1272 2.351738 GCTTGCCATTGTTAGTGTGGAC 60.352 50.000 0.00 0.00 34.94 4.02
1090 1280 0.244450 GCTGCTGCTTGCCATTGTTA 59.756 50.000 8.53 0.00 42.00 2.41
1161 1354 4.803426 CGTGGACGAGAGGGCTGC 62.803 72.222 0.00 0.00 43.02 5.25
1328 1527 2.122768 GTGGAGTTGAGGAGGATGGAT 58.877 52.381 0.00 0.00 0.00 3.41
1563 1762 2.572284 GAAGACGACCGACTGGGG 59.428 66.667 0.00 0.00 41.60 4.96
1565 1764 3.260931 TCGAAGACGACCGACTGG 58.739 61.111 0.00 0.00 43.81 4.00
1745 1944 1.524482 GGCGAGCTTCCTGGAGAAT 59.476 57.895 0.00 0.00 32.82 2.40
1847 2046 3.157680 CCCTGGTTGAACCCGAGT 58.842 61.111 12.53 0.00 37.50 4.18
1850 2049 4.636435 ACGCCCTGGTTGAACCCG 62.636 66.667 12.53 10.40 37.50 5.28
1963 2162 1.402852 CGAGCTTGGTCATCGACTTGA 60.403 52.381 0.00 0.00 38.72 3.02
2052 2251 0.947960 TCGATCAGGACGATGCTCTC 59.052 55.000 0.00 0.00 33.17 3.20
2062 2261 3.822192 CGGCGGTGTCGATCAGGA 61.822 66.667 0.00 0.00 39.00 3.86
2064 2263 2.579787 GACGGCGGTGTCGATCAG 60.580 66.667 13.24 0.00 39.00 2.90
2142 2368 1.709147 GAAGTACTGCATGCTGGCCG 61.709 60.000 25.87 9.22 0.00 6.13
2144 2370 1.379642 GGGAAGTACTGCATGCTGGC 61.380 60.000 25.87 18.18 0.00 4.85
2145 2371 1.091771 CGGGAAGTACTGCATGCTGG 61.092 60.000 25.87 17.38 0.00 4.85
2146 2372 1.709147 GCGGGAAGTACTGCATGCTG 61.709 60.000 21.60 21.60 42.32 4.41
2147 2373 1.450312 GCGGGAAGTACTGCATGCT 60.450 57.895 20.33 1.26 42.32 3.79
2203 2429 1.497991 CACACACGAACACCACTAGG 58.502 55.000 0.00 0.00 42.21 3.02
2251 2482 9.864034 TTATTATTACTACTAGTACAACGCGAC 57.136 33.333 15.93 0.00 28.93 5.19
2253 2484 9.322776 CCTTATTATTACTACTAGTACAACGCG 57.677 37.037 3.53 3.53 28.93 6.01
2254 2485 9.122613 GCCTTATTATTACTACTAGTACAACGC 57.877 37.037 0.00 0.00 28.93 4.84
2255 2486 9.322776 CGCCTTATTATTACTACTAGTACAACG 57.677 37.037 0.00 0.00 28.93 4.10
2259 2490 7.690224 GCGTCGCCTTATTATTACTACTAGTAC 59.310 40.741 5.75 0.00 28.93 2.73
2260 2491 7.387673 TGCGTCGCCTTATTATTACTACTAGTA 59.612 37.037 15.88 1.89 0.00 1.82
2261 2492 6.205464 TGCGTCGCCTTATTATTACTACTAGT 59.795 38.462 15.88 0.00 0.00 2.57
2262 2493 6.605849 TGCGTCGCCTTATTATTACTACTAG 58.394 40.000 15.88 0.00 0.00 2.57
2263 2494 6.558771 TGCGTCGCCTTATTATTACTACTA 57.441 37.500 15.88 0.00 0.00 1.82
2334 2565 3.090219 AATAGTGAGACCGGCCGGC 62.090 63.158 43.58 33.43 39.32 6.13
2335 2566 1.227263 CAATAGTGAGACCGGCCGG 60.227 63.158 42.17 42.17 42.03 6.13
2336 2567 0.174845 TTCAATAGTGAGACCGGCCG 59.825 55.000 21.04 21.04 34.49 6.13
2337 2568 2.396590 TTTCAATAGTGAGACCGGCC 57.603 50.000 0.00 0.00 34.49 6.13
2397 2787 5.937187 TCATGAACACGTCAAAATACATGG 58.063 37.500 0.00 0.00 40.50 3.66
2398 2788 7.461807 GCATTCATGAACACGTCAAAATACATG 60.462 37.037 11.07 0.28 40.50 3.21
2419 2809 2.162208 TGTTTTCATCGCTCCTGCATTC 59.838 45.455 0.00 0.00 39.64 2.67
2420 2810 2.161855 TGTTTTCATCGCTCCTGCATT 58.838 42.857 0.00 0.00 39.64 3.56
2430 2820 0.519999 GAGCAGCGCTGTTTTCATCG 60.520 55.000 35.80 10.27 39.88 3.84
2491 2911 2.287129 CGACCGACCCAAAAACGAAAAT 60.287 45.455 0.00 0.00 0.00 1.82
2492 2912 1.063764 CGACCGACCCAAAAACGAAAA 59.936 47.619 0.00 0.00 0.00 2.29
2507 2927 2.616960 TCCATCACTCAAAATCGACCG 58.383 47.619 0.00 0.00 0.00 4.79
2524 2944 0.856982 TCCCTTGCCTTTTCCTTCCA 59.143 50.000 0.00 0.00 0.00 3.53
2530 2950 2.441410 CTTCTCCTCCCTTGCCTTTTC 58.559 52.381 0.00 0.00 0.00 2.29
2532 2952 0.701147 CCTTCTCCTCCCTTGCCTTT 59.299 55.000 0.00 0.00 0.00 3.11
2556 2976 2.756283 CCTTCTCTCCGGCGAGGT 60.756 66.667 20.95 0.00 41.99 3.85
2558 2978 1.435515 CTTCCTTCTCTCCGGCGAG 59.564 63.158 15.55 15.55 37.48 5.03
2561 2981 2.736826 CCCCTTCCTTCTCTCCGGC 61.737 68.421 0.00 0.00 0.00 6.13
2588 3008 7.116089 TCCTAAGATAGAGAATGGGGTGATA 57.884 40.000 0.00 0.00 0.00 2.15
2600 3020 5.012561 CCCCACCTTCAATCCTAAGATAGAG 59.987 48.000 0.00 0.00 30.42 2.43
2613 3033 4.323477 CGCCGTCCCCACCTTCAA 62.323 66.667 0.00 0.00 0.00 2.69
2645 3065 1.810755 CTTTTTACTCCGGTGAAGCCC 59.189 52.381 11.17 0.00 0.00 5.19
2658 3078 2.354821 CCGCCTGCATCTACCTTTTTAC 59.645 50.000 0.00 0.00 0.00 2.01
2659 3079 2.639065 CCGCCTGCATCTACCTTTTTA 58.361 47.619 0.00 0.00 0.00 1.52
2665 3086 4.937431 GCCCCGCCTGCATCTACC 62.937 72.222 0.00 0.00 0.00 3.18
2668 3089 3.554342 CTAGCCCCGCCTGCATCT 61.554 66.667 0.00 0.00 0.00 2.90
2715 3136 2.272146 CCCAACATCTCCCCACCG 59.728 66.667 0.00 0.00 0.00 4.94
2912 3393 0.179137 CGATCTCGGCTACAGCACAA 60.179 55.000 3.24 0.00 44.36 3.33
2918 3399 1.001268 GATTGCTCGATCTCGGCTACA 60.001 52.381 12.12 0.00 40.29 2.74
3019 6583 2.159156 TCAAAGTACATCCCCGTGATCG 60.159 50.000 0.00 0.00 0.00 3.69
3020 6584 3.458189 CTCAAAGTACATCCCCGTGATC 58.542 50.000 0.00 0.00 0.00 2.92
3021 6585 2.420129 GCTCAAAGTACATCCCCGTGAT 60.420 50.000 0.00 0.00 0.00 3.06
3022 6586 1.066430 GCTCAAAGTACATCCCCGTGA 60.066 52.381 0.00 0.00 0.00 4.35
3023 6587 1.066143 AGCTCAAAGTACATCCCCGTG 60.066 52.381 0.00 0.00 0.00 4.94
3024 6588 1.276622 AGCTCAAAGTACATCCCCGT 58.723 50.000 0.00 0.00 0.00 5.28
3025 6589 2.009774 CAAGCTCAAAGTACATCCCCG 58.990 52.381 0.00 0.00 0.00 5.73
3026 6590 2.749621 CACAAGCTCAAAGTACATCCCC 59.250 50.000 0.00 0.00 0.00 4.81
3027 6591 3.674997 TCACAAGCTCAAAGTACATCCC 58.325 45.455 0.00 0.00 0.00 3.85
3028 6592 4.515191 TGTTCACAAGCTCAAAGTACATCC 59.485 41.667 0.00 0.00 0.00 3.51
3029 6593 5.673337 TGTTCACAAGCTCAAAGTACATC 57.327 39.130 0.00 0.00 0.00 3.06
3030 6594 5.590259 AGTTGTTCACAAGCTCAAAGTACAT 59.410 36.000 0.00 0.00 36.39 2.29
3031 6595 4.941263 AGTTGTTCACAAGCTCAAAGTACA 59.059 37.500 0.00 0.00 36.39 2.90
3032 6596 5.485662 AGTTGTTCACAAGCTCAAAGTAC 57.514 39.130 0.00 0.00 36.39 2.73
3033 6597 5.163663 CCAAGTTGTTCACAAGCTCAAAGTA 60.164 40.000 1.45 0.00 36.39 2.24
3034 6598 4.380867 CCAAGTTGTTCACAAGCTCAAAGT 60.381 41.667 1.45 0.00 36.39 2.66
3035 6599 4.107622 CCAAGTTGTTCACAAGCTCAAAG 58.892 43.478 1.45 0.00 36.39 2.77
3036 6600 3.675775 GCCAAGTTGTTCACAAGCTCAAA 60.676 43.478 1.45 0.00 36.39 2.69
3037 6601 2.159254 GCCAAGTTGTTCACAAGCTCAA 60.159 45.455 1.45 0.00 36.39 3.02
3038 6602 1.405105 GCCAAGTTGTTCACAAGCTCA 59.595 47.619 1.45 0.00 36.39 4.26
3039 6603 1.269257 GGCCAAGTTGTTCACAAGCTC 60.269 52.381 0.00 0.00 36.39 4.09
3040 6604 0.746659 GGCCAAGTTGTTCACAAGCT 59.253 50.000 0.00 0.00 36.39 3.74
3041 6605 0.594796 CGGCCAAGTTGTTCACAAGC 60.595 55.000 2.24 0.00 36.39 4.01
3042 6606 1.021202 TCGGCCAAGTTGTTCACAAG 58.979 50.000 2.24 0.00 36.39 3.16
3043 6607 1.464734 TTCGGCCAAGTTGTTCACAA 58.535 45.000 2.24 0.00 0.00 3.33
3044 6608 1.606668 GATTCGGCCAAGTTGTTCACA 59.393 47.619 2.24 0.00 0.00 3.58
3045 6609 1.399727 CGATTCGGCCAAGTTGTTCAC 60.400 52.381 2.24 0.00 0.00 3.18
3046 6610 0.871722 CGATTCGGCCAAGTTGTTCA 59.128 50.000 2.24 0.00 0.00 3.18
3047 6611 1.128692 CTCGATTCGGCCAAGTTGTTC 59.871 52.381 2.24 0.00 0.00 3.18
3048 6612 1.156736 CTCGATTCGGCCAAGTTGTT 58.843 50.000 2.24 0.00 0.00 2.83
3049 6613 0.673644 CCTCGATTCGGCCAAGTTGT 60.674 55.000 2.24 0.00 0.00 3.32
3050 6614 0.391130 TCCTCGATTCGGCCAAGTTG 60.391 55.000 2.24 0.00 0.00 3.16
3051 6615 0.323629 TTCCTCGATTCGGCCAAGTT 59.676 50.000 2.24 0.00 0.00 2.66
3052 6616 0.323629 TTTCCTCGATTCGGCCAAGT 59.676 50.000 2.24 0.00 0.00 3.16
3053 6617 1.448985 TTTTCCTCGATTCGGCCAAG 58.551 50.000 2.24 0.00 0.00 3.61
3054 6618 1.742831 CATTTTCCTCGATTCGGCCAA 59.257 47.619 2.24 0.00 0.00 4.52
3055 6619 1.339631 ACATTTTCCTCGATTCGGCCA 60.340 47.619 2.24 0.00 0.00 5.36
3056 6620 1.330829 GACATTTTCCTCGATTCGGCC 59.669 52.381 6.18 0.00 0.00 6.13
3057 6621 1.330829 GGACATTTTCCTCGATTCGGC 59.669 52.381 6.18 0.00 41.95 5.54
3058 6622 1.593006 CGGACATTTTCCTCGATTCGG 59.407 52.381 6.18 0.00 43.25 4.30
3059 6623 2.536365 TCGGACATTTTCCTCGATTCG 58.464 47.619 0.00 0.00 43.25 3.34
3060 6624 3.182572 CGATCGGACATTTTCCTCGATTC 59.817 47.826 7.38 0.00 42.22 2.52
3061 6625 3.123804 CGATCGGACATTTTCCTCGATT 58.876 45.455 7.38 0.00 42.22 3.34
3062 6626 2.743938 CGATCGGACATTTTCCTCGAT 58.256 47.619 7.38 0.00 42.22 3.59
3063 6627 1.801395 GCGATCGGACATTTTCCTCGA 60.801 52.381 18.30 0.00 42.22 4.04
3064 6628 0.577269 GCGATCGGACATTTTCCTCG 59.423 55.000 18.30 0.00 43.25 4.63
3065 6629 1.594862 CAGCGATCGGACATTTTCCTC 59.405 52.381 18.30 0.00 43.25 3.71
3066 6630 1.656652 CAGCGATCGGACATTTTCCT 58.343 50.000 18.30 0.00 43.25 3.36
3067 6631 0.028110 GCAGCGATCGGACATTTTCC 59.972 55.000 18.30 0.00 41.75 3.13
3068 6632 0.028110 GGCAGCGATCGGACATTTTC 59.972 55.000 18.30 0.00 0.00 2.29
3069 6633 0.676466 TGGCAGCGATCGGACATTTT 60.676 50.000 18.30 0.00 0.00 1.82
3070 6634 0.464373 ATGGCAGCGATCGGACATTT 60.464 50.000 18.30 0.00 31.92 2.32
3071 6635 0.464373 AATGGCAGCGATCGGACATT 60.464 50.000 18.30 17.41 40.54 2.71
3072 6636 0.882042 GAATGGCAGCGATCGGACAT 60.882 55.000 18.30 12.08 37.76 3.06
3073 6637 1.521457 GAATGGCAGCGATCGGACA 60.521 57.895 18.30 10.01 0.00 4.02
3074 6638 0.811616 AAGAATGGCAGCGATCGGAC 60.812 55.000 18.30 3.43 0.00 4.79
3075 6639 0.107703 AAAGAATGGCAGCGATCGGA 60.108 50.000 18.30 0.00 0.00 4.55
3076 6640 0.734889 AAAAGAATGGCAGCGATCGG 59.265 50.000 18.30 1.65 0.00 4.18
3077 6641 2.549633 AAAAAGAATGGCAGCGATCG 57.450 45.000 11.69 11.69 0.00 3.69
3109 6673 2.762745 TGCAGAGACGAGGGTTTTAAC 58.237 47.619 0.00 0.00 0.00 2.01
3110 6674 3.007506 TGATGCAGAGACGAGGGTTTTAA 59.992 43.478 0.00 0.00 0.00 1.52
3111 6675 2.565391 TGATGCAGAGACGAGGGTTTTA 59.435 45.455 0.00 0.00 0.00 1.52
3112 6676 1.347707 TGATGCAGAGACGAGGGTTTT 59.652 47.619 0.00 0.00 0.00 2.43
3113 6677 0.976641 TGATGCAGAGACGAGGGTTT 59.023 50.000 0.00 0.00 0.00 3.27
3114 6678 0.976641 TTGATGCAGAGACGAGGGTT 59.023 50.000 0.00 0.00 0.00 4.11
3115 6679 1.137872 GATTGATGCAGAGACGAGGGT 59.862 52.381 0.00 0.00 0.00 4.34
3116 6680 1.863267 GATTGATGCAGAGACGAGGG 58.137 55.000 0.00 0.00 0.00 4.30
3117 6681 1.066152 TCGATTGATGCAGAGACGAGG 59.934 52.381 0.00 0.00 0.00 4.63
3118 6682 2.481903 TCGATTGATGCAGAGACGAG 57.518 50.000 0.00 0.00 0.00 4.18
3119 6683 2.735823 CATCGATTGATGCAGAGACGA 58.264 47.619 10.05 0.09 45.06 4.20
3162 6726 9.567776 TGTCCTTGTCAGATCTTTGTTTAATAA 57.432 29.630 0.00 0.00 0.00 1.40
3163 6727 9.739276 ATGTCCTTGTCAGATCTTTGTTTAATA 57.261 29.630 0.00 0.00 0.00 0.98
3164 6728 8.641498 ATGTCCTTGTCAGATCTTTGTTTAAT 57.359 30.769 0.00 0.00 0.00 1.40
3165 6729 9.739276 ATATGTCCTTGTCAGATCTTTGTTTAA 57.261 29.630 0.00 0.00 0.00 1.52
3167 6731 9.911788 ATATATGTCCTTGTCAGATCTTTGTTT 57.088 29.630 0.00 0.00 0.00 2.83
3168 6732 9.553064 GATATATGTCCTTGTCAGATCTTTGTT 57.447 33.333 0.00 0.00 0.00 2.83
3169 6733 8.708378 TGATATATGTCCTTGTCAGATCTTTGT 58.292 33.333 0.00 0.00 0.00 2.83
3170 6734 9.205719 CTGATATATGTCCTTGTCAGATCTTTG 57.794 37.037 0.00 0.00 36.15 2.77
3171 6735 8.373981 CCTGATATATGTCCTTGTCAGATCTTT 58.626 37.037 0.00 0.00 36.15 2.52
3172 6736 7.526860 GCCTGATATATGTCCTTGTCAGATCTT 60.527 40.741 0.00 0.00 36.15 2.40
3173 6737 6.070881 GCCTGATATATGTCCTTGTCAGATCT 60.071 42.308 0.00 0.00 36.15 2.75
3174 6738 6.105333 GCCTGATATATGTCCTTGTCAGATC 58.895 44.000 0.00 0.00 36.15 2.75
3175 6739 5.046014 GGCCTGATATATGTCCTTGTCAGAT 60.046 44.000 0.00 0.00 36.15 2.90
3176 6740 4.284490 GGCCTGATATATGTCCTTGTCAGA 59.716 45.833 0.00 0.00 36.15 3.27
3177 6741 4.285517 AGGCCTGATATATGTCCTTGTCAG 59.714 45.833 3.11 0.00 34.39 3.51
3178 6742 4.234550 AGGCCTGATATATGTCCTTGTCA 58.765 43.478 3.11 0.00 0.00 3.58
3179 6743 4.899352 AGGCCTGATATATGTCCTTGTC 57.101 45.455 3.11 0.00 0.00 3.18
3180 6744 5.155161 TGTAGGCCTGATATATGTCCTTGT 58.845 41.667 17.99 0.00 0.00 3.16
3181 6745 5.745312 TGTAGGCCTGATATATGTCCTTG 57.255 43.478 17.99 0.00 0.00 3.61
3182 6746 6.763715 TTTGTAGGCCTGATATATGTCCTT 57.236 37.500 17.99 0.00 0.00 3.36
3183 6747 6.959606 ATTTGTAGGCCTGATATATGTCCT 57.040 37.500 17.99 0.00 0.00 3.85
3184 6748 6.313905 CGAATTTGTAGGCCTGATATATGTCC 59.686 42.308 17.99 0.00 0.00 4.02
3185 6749 7.097192 TCGAATTTGTAGGCCTGATATATGTC 58.903 38.462 17.99 2.33 0.00 3.06
3186 6750 7.004555 TCGAATTTGTAGGCCTGATATATGT 57.995 36.000 17.99 0.00 0.00 2.29
3187 6751 9.599866 TTATCGAATTTGTAGGCCTGATATATG 57.400 33.333 17.99 0.00 0.00 1.78
3189 6753 9.599866 CATTATCGAATTTGTAGGCCTGATATA 57.400 33.333 17.99 0.00 0.00 0.86
3190 6754 8.103305 ACATTATCGAATTTGTAGGCCTGATAT 58.897 33.333 17.99 0.10 0.00 1.63
3191 6755 7.387673 CACATTATCGAATTTGTAGGCCTGATA 59.612 37.037 17.99 8.31 0.00 2.15
3192 6756 6.205464 CACATTATCGAATTTGTAGGCCTGAT 59.795 38.462 17.99 9.41 0.00 2.90
3193 6757 5.527214 CACATTATCGAATTTGTAGGCCTGA 59.473 40.000 17.99 0.60 0.00 3.86
3194 6758 5.527214 TCACATTATCGAATTTGTAGGCCTG 59.473 40.000 17.99 0.00 0.00 4.85
3195 6759 5.680619 TCACATTATCGAATTTGTAGGCCT 58.319 37.500 11.78 11.78 0.00 5.19
3196 6760 6.038271 ACTTCACATTATCGAATTTGTAGGCC 59.962 38.462 0.00 0.00 29.20 5.19
3197 6761 6.907212 CACTTCACATTATCGAATTTGTAGGC 59.093 38.462 0.00 0.00 29.20 3.93
3198 6762 8.196802 TCACTTCACATTATCGAATTTGTAGG 57.803 34.615 0.00 0.00 29.20 3.18
3199 6763 9.855361 GATCACTTCACATTATCGAATTTGTAG 57.145 33.333 0.00 0.00 30.55 2.74
3200 6764 9.599866 AGATCACTTCACATTATCGAATTTGTA 57.400 29.630 0.00 0.00 0.00 2.41
3201 6765 8.498054 AGATCACTTCACATTATCGAATTTGT 57.502 30.769 0.00 0.00 0.00 2.83
3202 6766 8.606602 TGAGATCACTTCACATTATCGAATTTG 58.393 33.333 0.00 0.00 0.00 2.32
3203 6767 8.607459 GTGAGATCACTTCACATTATCGAATTT 58.393 33.333 5.72 0.00 43.25 1.82
3204 6768 8.136057 GTGAGATCACTTCACATTATCGAATT 57.864 34.615 5.72 0.00 43.25 2.17
3205 6769 7.706281 GTGAGATCACTTCACATTATCGAAT 57.294 36.000 5.72 0.00 43.25 3.34
3220 6784 3.932545 AGATATGCGGAGTGAGATCAC 57.067 47.619 4.77 4.77 46.77 3.06
3221 6785 6.405278 TTTTAGATATGCGGAGTGAGATCA 57.595 37.500 0.00 0.00 0.00 2.92
3222 6786 6.252441 CGATTTTAGATATGCGGAGTGAGATC 59.748 42.308 0.00 0.00 0.00 2.75
3223 6787 6.096036 CGATTTTAGATATGCGGAGTGAGAT 58.904 40.000 0.00 0.00 0.00 2.75
3224 6788 5.461526 CGATTTTAGATATGCGGAGTGAGA 58.538 41.667 0.00 0.00 0.00 3.27
3225 6789 4.623167 CCGATTTTAGATATGCGGAGTGAG 59.377 45.833 0.00 0.00 41.11 3.51
3226 6790 4.038763 ACCGATTTTAGATATGCGGAGTGA 59.961 41.667 0.00 0.00 41.11 3.41
3227 6791 4.307432 ACCGATTTTAGATATGCGGAGTG 58.693 43.478 0.00 0.00 41.11 3.51
3228 6792 4.602340 ACCGATTTTAGATATGCGGAGT 57.398 40.909 0.00 0.00 41.11 3.85
3229 6793 5.455849 CGATACCGATTTTAGATATGCGGAG 59.544 44.000 0.00 0.00 41.11 4.63
3230 6794 5.106038 ACGATACCGATTTTAGATATGCGGA 60.106 40.000 0.00 0.00 41.11 5.54
3231 6795 5.100259 ACGATACCGATTTTAGATATGCGG 58.900 41.667 0.00 0.00 43.95 5.69
3232 6796 5.053221 CGACGATACCGATTTTAGATATGCG 60.053 44.000 0.00 0.00 39.50 4.73
3233 6797 5.275788 GCGACGATACCGATTTTAGATATGC 60.276 44.000 0.00 0.00 39.50 3.14
3234 6798 6.021390 CAGCGACGATACCGATTTTAGATATG 60.021 42.308 0.00 0.00 39.50 1.78
3235 6799 6.028368 CAGCGACGATACCGATTTTAGATAT 58.972 40.000 0.00 0.00 39.50 1.63
3236 6800 5.179929 TCAGCGACGATACCGATTTTAGATA 59.820 40.000 0.00 0.00 39.50 1.98
3237 6801 4.023450 TCAGCGACGATACCGATTTTAGAT 60.023 41.667 0.00 0.00 39.50 1.98
3238 6802 3.313249 TCAGCGACGATACCGATTTTAGA 59.687 43.478 0.00 0.00 39.50 2.10
3239 6803 3.624900 TCAGCGACGATACCGATTTTAG 58.375 45.455 0.00 0.00 39.50 1.85
3240 6804 3.696281 TCAGCGACGATACCGATTTTA 57.304 42.857 0.00 0.00 39.50 1.52
3241 6805 2.572191 TCAGCGACGATACCGATTTT 57.428 45.000 0.00 0.00 39.50 1.82
3242 6806 2.607282 GGATCAGCGACGATACCGATTT 60.607 50.000 0.00 0.00 39.50 2.17
3243 6807 1.068472 GGATCAGCGACGATACCGATT 60.068 52.381 0.00 0.00 39.50 3.34
3244 6808 0.522180 GGATCAGCGACGATACCGAT 59.478 55.000 0.00 0.00 39.50 4.18
3245 6809 0.816421 TGGATCAGCGACGATACCGA 60.816 55.000 0.00 0.00 39.50 4.69
3246 6810 0.241213 ATGGATCAGCGACGATACCG 59.759 55.000 0.00 0.00 42.50 4.02
3247 6811 1.402984 GGATGGATCAGCGACGATACC 60.403 57.143 0.00 0.00 0.00 2.73
3248 6812 1.729472 CGGATGGATCAGCGACGATAC 60.729 57.143 0.00 0.00 0.00 2.24
3249 6813 0.521735 CGGATGGATCAGCGACGATA 59.478 55.000 0.00 0.00 0.00 2.92
3250 6814 1.287191 CGGATGGATCAGCGACGAT 59.713 57.895 0.00 0.00 0.00 3.73
3251 6815 2.721859 CGGATGGATCAGCGACGA 59.278 61.111 0.00 0.00 0.00 4.20
3252 6816 3.032609 GCGGATGGATCAGCGACG 61.033 66.667 0.00 0.00 38.17 5.12


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.