Multiple sequence alignment - TraesCS2B01G615700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G615700 chr2B 100.000 3026 0 0 1 3026 793455345 793458370 0.000000e+00 5589.0
1 TraesCS2B01G615700 chr2B 91.828 1554 97 17 711 2242 793447376 793445831 0.000000e+00 2139.0
2 TraesCS2B01G615700 chr2B 78.517 917 174 18 1106 2006 793506118 793505209 5.620000e-162 580.0
3 TraesCS2B01G615700 chr2B 97.297 222 6 0 1 222 156589232 156589011 7.920000e-101 377.0
4 TraesCS2B01G615700 chr2B 84.677 248 25 8 243 480 793448327 793448083 5.040000e-58 235.0
5 TraesCS2B01G615700 chr2B 78.082 365 55 21 2599 2953 646131496 646131147 1.100000e-49 207.0
6 TraesCS2B01G615700 chr2A 89.776 2680 187 47 319 2953 768307503 768304866 0.000000e+00 3350.0
7 TraesCS2B01G615700 chr2A 90.691 1622 115 17 712 2317 768429059 768430660 0.000000e+00 2126.0
8 TraesCS2B01G615700 chr2A 79.747 948 160 26 1104 2027 768257036 768257975 0.000000e+00 658.0
9 TraesCS2B01G615700 chr2A 77.462 914 186 14 1106 2006 768266940 768266034 2.070000e-146 529.0
10 TraesCS2B01G615700 chr2A 91.892 111 5 1 921 1031 125618722 125618828 5.230000e-33 152.0
11 TraesCS2B01G615700 chr2A 90.909 77 7 0 483 559 768424273 768424349 1.480000e-18 104.0
12 TraesCS2B01G615700 chr2D 92.122 1612 91 19 810 2408 643468829 643467241 0.000000e+00 2241.0
13 TraesCS2B01G615700 chr2D 93.932 1236 61 2 810 2045 643640184 643641405 0.000000e+00 1855.0
14 TraesCS2B01G615700 chr2D 96.396 222 8 0 1 222 118468835 118469056 1.710000e-97 366.0
15 TraesCS2B01G615700 chr2D 83.333 252 24 3 243 479 643469758 643469510 1.830000e-52 217.0
16 TraesCS2B01G615700 chr2D 84.475 219 21 5 2104 2318 643641397 643641606 1.420000e-48 204.0
17 TraesCS2B01G615700 chr2D 85.088 114 8 2 711 815 643639736 643639849 1.150000e-19 108.0
18 TraesCS2B01G615700 chr2D 97.222 36 1 0 2971 3006 619313138 619313103 9.060000e-06 62.1
19 TraesCS2B01G615700 chr3D 91.396 523 38 2 921 1443 306087639 306087124 0.000000e+00 710.0
20 TraesCS2B01G615700 chr3D 77.186 938 176 23 1106 2028 532205690 532204776 2.080000e-141 512.0
21 TraesCS2B01G615700 chr3A 79.157 878 167 12 1106 1972 667495152 667494280 7.220000e-166 593.0
22 TraesCS2B01G615700 chr3A 83.898 118 15 3 1040 1155 88122777 88122662 3.190000e-20 110.0
23 TraesCS2B01G615700 chr3B 81.616 495 81 7 1542 2028 704406942 704406450 4.700000e-108 401.0
24 TraesCS2B01G615700 chr7B 97.748 222 5 0 1 222 624711793 624711572 1.700000e-102 383.0
25 TraesCS2B01G615700 chr6D 97.748 222 5 0 1 222 315652741 315652962 1.700000e-102 383.0
26 TraesCS2B01G615700 chr4A 97.748 222 5 0 1 222 666490082 666490303 1.700000e-102 383.0
27 TraesCS2B01G615700 chr4A 87.037 108 14 0 1040 1147 570232871 570232978 4.100000e-24 122.0
28 TraesCS2B01G615700 chr4B 96.847 222 7 0 1 222 174041652 174041873 3.680000e-99 372.0
29 TraesCS2B01G615700 chr4B 96.847 222 7 0 1 222 615383327 615383106 3.680000e-99 372.0
30 TraesCS2B01G615700 chr4B 96.396 222 8 0 1 222 588587442 588587663 1.710000e-97 366.0
31 TraesCS2B01G615700 chr4B 75.429 350 75 10 2599 2942 48630247 48629903 3.120000e-35 159.0
32 TraesCS2B01G615700 chr4B 91.589 107 5 1 921 1027 636773452 636773554 8.740000e-31 145.0
33 TraesCS2B01G615700 chr4B 94.444 36 2 0 2971 3006 476183802 476183767 4.210000e-04 56.5
34 TraesCS2B01G615700 chr1B 96.847 222 7 0 1 222 644278623 644278402 3.680000e-99 372.0
35 TraesCS2B01G615700 chr1B 92.500 40 3 0 2971 3010 321867983 321867944 1.170000e-04 58.4
36 TraesCS2B01G615700 chr7D 76.554 354 68 12 2599 2942 388994208 388993860 2.400000e-41 180.0
37 TraesCS2B01G615700 chr7D 80.252 238 46 1 2688 2924 537879890 537880127 8.620000e-41 178.0
38 TraesCS2B01G615700 chr5D 79.839 248 46 4 2680 2924 435585332 435585578 8.620000e-41 178.0
39 TraesCS2B01G615700 chr4D 78.947 266 52 4 2680 2942 307814621 307814357 8.620000e-41 178.0
40 TraesCS2B01G615700 chr1D 78.707 263 53 3 2682 2942 405754226 405754487 4.010000e-39 172.0
41 TraesCS2B01G615700 chr1D 76.147 327 60 14 2599 2913 426618141 426618461 4.040000e-34 156.0
42 TraesCS2B01G615700 chr1D 75.146 342 72 11 2611 2947 35901281 35900948 6.760000e-32 148.0
43 TraesCS2B01G615700 chr1A 82.759 116 20 0 1040 1155 250606285 250606400 1.480000e-18 104.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G615700 chr2B 793455345 793458370 3025 False 5589.000000 5589 100.000000 1 3026 1 chr2B.!!$F1 3025
1 TraesCS2B01G615700 chr2B 793445831 793448327 2496 True 1187.000000 2139 88.252500 243 2242 2 chr2B.!!$R4 1999
2 TraesCS2B01G615700 chr2B 793505209 793506118 909 True 580.000000 580 78.517000 1106 2006 1 chr2B.!!$R3 900
3 TraesCS2B01G615700 chr2A 768304866 768307503 2637 True 3350.000000 3350 89.776000 319 2953 1 chr2A.!!$R2 2634
4 TraesCS2B01G615700 chr2A 768429059 768430660 1601 False 2126.000000 2126 90.691000 712 2317 1 chr2A.!!$F4 1605
5 TraesCS2B01G615700 chr2A 768257036 768257975 939 False 658.000000 658 79.747000 1104 2027 1 chr2A.!!$F2 923
6 TraesCS2B01G615700 chr2A 768266034 768266940 906 True 529.000000 529 77.462000 1106 2006 1 chr2A.!!$R1 900
7 TraesCS2B01G615700 chr2D 643467241 643469758 2517 True 1229.000000 2241 87.727500 243 2408 2 chr2D.!!$R2 2165
8 TraesCS2B01G615700 chr2D 643639736 643641606 1870 False 722.333333 1855 87.831667 711 2318 3 chr2D.!!$F2 1607
9 TraesCS2B01G615700 chr3D 306087124 306087639 515 True 710.000000 710 91.396000 921 1443 1 chr3D.!!$R1 522
10 TraesCS2B01G615700 chr3D 532204776 532205690 914 True 512.000000 512 77.186000 1106 2028 1 chr3D.!!$R2 922
11 TraesCS2B01G615700 chr3A 667494280 667495152 872 True 593.000000 593 79.157000 1106 1972 1 chr3A.!!$R2 866

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
103 104 0.179207 CGAACAACGACGAGATCCGA 60.179 55.0 0.0 0.0 45.77 4.55 F
108 109 0.242825 AACGACGAGATCCGAGCAAA 59.757 50.0 0.0 0.0 41.76 3.68 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1779 2816 0.034756 CCATGTCGGAGGTGAACACA 59.965 55.0 7.25 0.0 36.56 3.72 R
2084 3139 1.011968 TACACGAAGCCATGCACGTC 61.012 55.0 0.00 0.0 40.22 4.34 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 2.836154 GACCAGCACCCCAGAACA 59.164 61.111 0.00 0.00 0.00 3.18
18 19 1.302832 GACCAGCACCCCAGAACAG 60.303 63.158 0.00 0.00 0.00 3.16
19 20 2.674380 CCAGCACCCCAGAACAGC 60.674 66.667 0.00 0.00 0.00 4.40
20 21 2.113774 CAGCACCCCAGAACAGCA 59.886 61.111 0.00 0.00 0.00 4.41
21 22 1.529010 CAGCACCCCAGAACAGCAA 60.529 57.895 0.00 0.00 0.00 3.91
22 23 1.529244 AGCACCCCAGAACAGCAAC 60.529 57.895 0.00 0.00 0.00 4.17
23 24 2.564721 GCACCCCAGAACAGCAACC 61.565 63.158 0.00 0.00 0.00 3.77
24 25 2.113139 ACCCCAGAACAGCAACCG 59.887 61.111 0.00 0.00 0.00 4.44
25 26 3.365265 CCCCAGAACAGCAACCGC 61.365 66.667 0.00 0.00 38.99 5.68
26 27 3.365265 CCCAGAACAGCAACCGCC 61.365 66.667 0.00 0.00 39.83 6.13
27 28 3.726517 CCAGAACAGCAACCGCCG 61.727 66.667 0.00 0.00 39.83 6.46
28 29 4.389576 CAGAACAGCAACCGCCGC 62.390 66.667 0.00 0.00 39.83 6.53
36 37 3.427425 CAACCGCCGCCGATGAAA 61.427 61.111 0.00 0.00 36.29 2.69
37 38 2.670251 AACCGCCGCCGATGAAAA 60.670 55.556 0.00 0.00 36.29 2.29
38 39 2.262303 AACCGCCGCCGATGAAAAA 61.262 52.632 0.00 0.00 36.29 1.94
39 40 1.591504 AACCGCCGCCGATGAAAAAT 61.592 50.000 0.00 0.00 36.29 1.82
40 41 0.745128 ACCGCCGCCGATGAAAAATA 60.745 50.000 0.00 0.00 36.29 1.40
41 42 0.378962 CCGCCGCCGATGAAAAATAA 59.621 50.000 0.00 0.00 36.29 1.40
42 43 1.462791 CGCCGCCGATGAAAAATAAC 58.537 50.000 0.00 0.00 36.29 1.89
43 44 1.462791 GCCGCCGATGAAAAATAACG 58.537 50.000 0.00 0.00 0.00 3.18
44 45 1.202098 GCCGCCGATGAAAAATAACGT 60.202 47.619 0.00 0.00 0.00 3.99
45 46 2.030701 GCCGCCGATGAAAAATAACGTA 59.969 45.455 0.00 0.00 0.00 3.57
46 47 3.843510 GCCGCCGATGAAAAATAACGTAG 60.844 47.826 0.00 0.00 0.00 3.51
47 48 3.552699 CCGCCGATGAAAAATAACGTAGA 59.447 43.478 0.00 0.00 0.00 2.59
48 49 4.210537 CCGCCGATGAAAAATAACGTAGAT 59.789 41.667 0.00 0.00 0.00 1.98
49 50 5.363517 CGCCGATGAAAAATAACGTAGATC 58.636 41.667 0.00 0.00 0.00 2.75
50 51 5.363517 GCCGATGAAAAATAACGTAGATCG 58.636 41.667 0.00 0.00 46.00 3.69
51 52 5.174398 GCCGATGAAAAATAACGTAGATCGA 59.826 40.000 0.00 0.00 42.86 3.59
52 53 6.291955 GCCGATGAAAAATAACGTAGATCGAA 60.292 38.462 0.00 0.00 42.86 3.71
53 54 7.614908 CCGATGAAAAATAACGTAGATCGAAA 58.385 34.615 0.00 0.00 42.86 3.46
54 55 7.787935 CCGATGAAAAATAACGTAGATCGAAAG 59.212 37.037 0.00 0.00 42.86 2.62
69 70 3.997762 TCGAAAGAATCCAAACCGAAGA 58.002 40.909 0.00 0.00 37.03 2.87
70 71 3.744426 TCGAAAGAATCCAAACCGAAGAC 59.256 43.478 0.00 0.00 37.03 3.01
71 72 3.496884 CGAAAGAATCCAAACCGAAGACA 59.503 43.478 0.00 0.00 0.00 3.41
72 73 4.154195 CGAAAGAATCCAAACCGAAGACAT 59.846 41.667 0.00 0.00 0.00 3.06
73 74 5.350365 CGAAAGAATCCAAACCGAAGACATA 59.650 40.000 0.00 0.00 0.00 2.29
74 75 6.496338 AAAGAATCCAAACCGAAGACATAC 57.504 37.500 0.00 0.00 0.00 2.39
75 76 4.181578 AGAATCCAAACCGAAGACATACG 58.818 43.478 0.00 0.00 0.00 3.06
76 77 3.880047 ATCCAAACCGAAGACATACGA 57.120 42.857 0.00 0.00 0.00 3.43
77 78 3.663995 TCCAAACCGAAGACATACGAA 57.336 42.857 0.00 0.00 0.00 3.85
78 79 3.319755 TCCAAACCGAAGACATACGAAC 58.680 45.455 0.00 0.00 0.00 3.95
79 80 2.091588 CCAAACCGAAGACATACGAACG 59.908 50.000 0.00 0.00 0.00 3.95
80 81 2.712057 AACCGAAGACATACGAACGT 57.288 45.000 5.03 5.03 0.00 3.99
81 82 3.829886 AACCGAAGACATACGAACGTA 57.170 42.857 9.41 9.41 34.87 3.57
82 83 3.395858 ACCGAAGACATACGAACGTAG 57.604 47.619 12.33 7.48 33.77 3.51
83 84 3.002791 ACCGAAGACATACGAACGTAGA 58.997 45.455 12.33 0.00 33.77 2.59
84 85 3.181516 ACCGAAGACATACGAACGTAGAC 60.182 47.826 12.33 6.66 33.77 2.59
85 86 3.018246 CGAAGACATACGAACGTAGACG 58.982 50.000 12.33 0.00 46.33 4.18
86 87 3.241773 CGAAGACATACGAACGTAGACGA 60.242 47.826 9.41 0.00 43.02 4.20
87 88 4.641954 GAAGACATACGAACGTAGACGAA 58.358 43.478 9.41 0.00 43.02 3.85
88 89 3.996032 AGACATACGAACGTAGACGAAC 58.004 45.455 9.41 1.55 43.02 3.95
89 90 3.433274 AGACATACGAACGTAGACGAACA 59.567 43.478 9.41 2.72 43.02 3.18
90 91 4.083855 AGACATACGAACGTAGACGAACAA 60.084 41.667 9.41 0.00 43.02 2.83
91 92 3.908382 ACATACGAACGTAGACGAACAAC 59.092 43.478 9.41 0.00 43.02 3.32
92 93 3.003696 CATACGAACGTAGACGAACAACG 60.004 47.826 9.41 8.78 43.02 4.10
93 94 1.003972 ACGAACGTAGACGAACAACGA 60.004 47.619 9.41 0.00 45.77 3.85
94 95 1.376856 CGAACGTAGACGAACAACGAC 59.623 52.381 9.41 0.00 45.77 4.34
95 96 1.376856 GAACGTAGACGAACAACGACG 59.623 52.381 9.41 0.00 45.77 5.12
96 97 0.581529 ACGTAGACGAACAACGACGA 59.418 50.000 9.41 0.00 45.77 4.20
97 98 1.236556 CGTAGACGAACAACGACGAG 58.763 55.000 0.00 0.00 45.77 4.18
98 99 1.136529 CGTAGACGAACAACGACGAGA 60.137 52.381 0.00 0.00 45.77 4.04
99 100 2.473540 CGTAGACGAACAACGACGAGAT 60.474 50.000 0.00 0.00 45.77 2.75
100 101 2.244281 AGACGAACAACGACGAGATC 57.756 50.000 0.00 0.00 45.77 2.75
101 102 1.135746 AGACGAACAACGACGAGATCC 60.136 52.381 0.00 0.00 45.77 3.36
102 103 0.453950 ACGAACAACGACGAGATCCG 60.454 55.000 0.00 2.02 45.77 4.18
103 104 0.179207 CGAACAACGACGAGATCCGA 60.179 55.000 0.00 0.00 45.77 4.55
104 105 1.536149 GAACAACGACGAGATCCGAG 58.464 55.000 0.00 6.49 41.76 4.63
105 106 0.456312 AACAACGACGAGATCCGAGC 60.456 55.000 0.00 2.24 41.76 5.03
106 107 1.136774 CAACGACGAGATCCGAGCA 59.863 57.895 0.00 0.00 41.76 4.26
107 108 0.456142 CAACGACGAGATCCGAGCAA 60.456 55.000 0.00 0.00 41.76 3.91
108 109 0.242825 AACGACGAGATCCGAGCAAA 59.757 50.000 0.00 0.00 41.76 3.68
109 110 0.456221 ACGACGAGATCCGAGCAAAT 59.544 50.000 0.00 0.00 41.76 2.32
110 111 1.124462 CGACGAGATCCGAGCAAATC 58.876 55.000 10.05 0.00 41.76 2.17
111 112 1.492720 GACGAGATCCGAGCAAATCC 58.507 55.000 10.05 0.00 41.76 3.01
112 113 0.824109 ACGAGATCCGAGCAAATCCA 59.176 50.000 10.05 0.00 41.76 3.41
113 114 1.212616 CGAGATCCGAGCAAATCCAC 58.787 55.000 0.00 0.00 41.76 4.02
114 115 1.587547 GAGATCCGAGCAAATCCACC 58.412 55.000 0.00 0.00 0.00 4.61
115 116 0.911769 AGATCCGAGCAAATCCACCA 59.088 50.000 0.00 0.00 0.00 4.17
116 117 1.281867 AGATCCGAGCAAATCCACCAA 59.718 47.619 0.00 0.00 0.00 3.67
117 118 2.091541 GATCCGAGCAAATCCACCAAA 58.908 47.619 0.00 0.00 0.00 3.28
118 119 1.533625 TCCGAGCAAATCCACCAAAG 58.466 50.000 0.00 0.00 0.00 2.77
119 120 1.073125 TCCGAGCAAATCCACCAAAGA 59.927 47.619 0.00 0.00 0.00 2.52
120 121 2.094675 CCGAGCAAATCCACCAAAGAT 58.905 47.619 0.00 0.00 0.00 2.40
121 122 3.054728 TCCGAGCAAATCCACCAAAGATA 60.055 43.478 0.00 0.00 0.00 1.98
122 123 3.313526 CCGAGCAAATCCACCAAAGATAG 59.686 47.826 0.00 0.00 0.00 2.08
123 124 4.191544 CGAGCAAATCCACCAAAGATAGA 58.808 43.478 0.00 0.00 0.00 1.98
124 125 4.818546 CGAGCAAATCCACCAAAGATAGAT 59.181 41.667 0.00 0.00 0.00 1.98
125 126 5.049818 CGAGCAAATCCACCAAAGATAGATC 60.050 44.000 0.00 0.00 0.00 2.75
126 127 6.011122 AGCAAATCCACCAAAGATAGATCT 57.989 37.500 0.00 0.00 39.22 2.75
127 128 5.826737 AGCAAATCCACCAAAGATAGATCTG 59.173 40.000 5.18 0.00 37.19 2.90
128 129 5.506982 GCAAATCCACCAAAGATAGATCTGC 60.507 44.000 5.18 0.00 37.19 4.26
129 130 3.845781 TCCACCAAAGATAGATCTGCC 57.154 47.619 5.18 0.00 37.19 4.85
130 131 2.103094 TCCACCAAAGATAGATCTGCCG 59.897 50.000 5.18 0.00 37.19 5.69
131 132 2.487934 CACCAAAGATAGATCTGCCGG 58.512 52.381 5.18 0.00 37.19 6.13
132 133 2.103094 CACCAAAGATAGATCTGCCGGA 59.897 50.000 5.05 0.00 37.19 5.14
133 134 2.366916 ACCAAAGATAGATCTGCCGGAG 59.633 50.000 5.05 0.00 37.19 4.63
134 135 2.630098 CCAAAGATAGATCTGCCGGAGA 59.370 50.000 5.05 5.76 37.19 3.71
135 136 3.553922 CCAAAGATAGATCTGCCGGAGAC 60.554 52.174 5.05 0.97 37.19 3.36
136 137 2.666272 AGATAGATCTGCCGGAGACA 57.334 50.000 5.05 0.00 35.42 3.41
137 138 2.235016 AGATAGATCTGCCGGAGACAC 58.765 52.381 5.05 3.97 35.42 3.67
138 139 1.957177 GATAGATCTGCCGGAGACACA 59.043 52.381 5.05 0.00 31.75 3.72
139 140 1.103803 TAGATCTGCCGGAGACACAC 58.896 55.000 5.05 0.00 31.75 3.82
140 141 1.153549 GATCTGCCGGAGACACACC 60.154 63.158 5.05 0.00 31.75 4.16
141 142 1.608717 GATCTGCCGGAGACACACCT 61.609 60.000 5.05 0.00 31.75 4.00
142 143 1.194781 ATCTGCCGGAGACACACCTT 61.195 55.000 5.05 0.00 31.75 3.50
143 144 1.374758 CTGCCGGAGACACACCTTC 60.375 63.158 5.05 0.00 0.00 3.46
144 145 2.099652 CTGCCGGAGACACACCTTCA 62.100 60.000 5.05 0.00 0.00 3.02
145 146 1.668151 GCCGGAGACACACCTTCAC 60.668 63.158 5.05 0.00 0.00 3.18
146 147 1.745890 CCGGAGACACACCTTCACA 59.254 57.895 0.00 0.00 0.00 3.58
147 148 0.600255 CCGGAGACACACCTTCACAC 60.600 60.000 0.00 0.00 0.00 3.82
148 149 0.939577 CGGAGACACACCTTCACACG 60.940 60.000 0.00 0.00 0.00 4.49
149 150 1.222115 GGAGACACACCTTCACACGC 61.222 60.000 0.00 0.00 0.00 5.34
150 151 1.222115 GAGACACACCTTCACACGCC 61.222 60.000 0.00 0.00 0.00 5.68
151 152 2.203153 ACACACCTTCACACGCCC 60.203 61.111 0.00 0.00 0.00 6.13
152 153 2.203139 CACACCTTCACACGCCCA 60.203 61.111 0.00 0.00 0.00 5.36
153 154 2.203153 ACACCTTCACACGCCCAC 60.203 61.111 0.00 0.00 0.00 4.61
154 155 2.978010 CACCTTCACACGCCCACC 60.978 66.667 0.00 0.00 0.00 4.61
155 156 3.484806 ACCTTCACACGCCCACCA 61.485 61.111 0.00 0.00 0.00 4.17
156 157 2.203280 CCTTCACACGCCCACCAA 60.203 61.111 0.00 0.00 0.00 3.67
157 158 2.551912 CCTTCACACGCCCACCAAC 61.552 63.158 0.00 0.00 0.00 3.77
158 159 2.892334 CTTCACACGCCCACCAACG 61.892 63.158 0.00 0.00 0.00 4.10
159 160 3.387225 TTCACACGCCCACCAACGA 62.387 57.895 0.00 0.00 0.00 3.85
160 161 2.668185 TTCACACGCCCACCAACGAT 62.668 55.000 0.00 0.00 0.00 3.73
161 162 2.668212 ACACGCCCACCAACGATG 60.668 61.111 0.00 0.00 0.00 3.84
162 163 4.101790 CACGCCCACCAACGATGC 62.102 66.667 0.00 0.00 0.00 3.91
163 164 4.329545 ACGCCCACCAACGATGCT 62.330 61.111 0.00 0.00 0.00 3.79
164 165 2.125310 CGCCCACCAACGATGCTA 60.125 61.111 0.00 0.00 0.00 3.49
165 166 2.173669 CGCCCACCAACGATGCTAG 61.174 63.158 0.00 0.00 0.00 3.42
166 167 1.220749 GCCCACCAACGATGCTAGA 59.779 57.895 0.00 0.00 0.00 2.43
167 168 1.090052 GCCCACCAACGATGCTAGAC 61.090 60.000 0.00 0.00 0.00 2.59
168 169 0.806102 CCCACCAACGATGCTAGACG 60.806 60.000 0.00 0.00 0.00 4.18
169 170 1.421410 CCACCAACGATGCTAGACGC 61.421 60.000 0.00 0.00 39.77 5.19
179 180 4.124351 CTAGACGCACCGCCGGAA 62.124 66.667 11.71 0.00 0.00 4.30
180 181 4.424566 TAGACGCACCGCCGGAAC 62.425 66.667 11.71 0.00 0.00 3.62
193 194 4.222847 GGAACGAGGGCTAGGCGG 62.223 72.222 10.58 4.71 0.00 6.13
194 195 4.222847 GAACGAGGGCTAGGCGGG 62.223 72.222 10.58 4.34 0.00 6.13
198 199 4.541648 GAGGGCTAGGCGGGGAGA 62.542 72.222 10.58 0.00 0.00 3.71
199 200 4.862823 AGGGCTAGGCGGGGAGAC 62.863 72.222 10.58 0.00 0.00 3.36
200 201 4.862823 GGGCTAGGCGGGGAGACT 62.863 72.222 10.58 0.00 43.68 3.24
201 202 2.764547 GGCTAGGCGGGGAGACTT 60.765 66.667 0.00 0.00 40.13 3.01
202 203 2.368011 GGCTAGGCGGGGAGACTTT 61.368 63.158 0.00 0.00 40.13 2.66
203 204 1.602771 GCTAGGCGGGGAGACTTTT 59.397 57.895 0.00 0.00 40.13 2.27
204 205 0.828677 GCTAGGCGGGGAGACTTTTA 59.171 55.000 0.00 0.00 40.13 1.52
205 206 1.416772 GCTAGGCGGGGAGACTTTTAT 59.583 52.381 0.00 0.00 40.13 1.40
206 207 2.158798 GCTAGGCGGGGAGACTTTTATT 60.159 50.000 0.00 0.00 40.13 1.40
207 208 2.711978 AGGCGGGGAGACTTTTATTC 57.288 50.000 0.00 0.00 30.60 1.75
208 209 1.212195 AGGCGGGGAGACTTTTATTCC 59.788 52.381 0.00 0.00 30.60 3.01
209 210 1.064979 GGCGGGGAGACTTTTATTCCA 60.065 52.381 0.00 0.00 32.50 3.53
210 211 2.422945 GGCGGGGAGACTTTTATTCCAT 60.423 50.000 0.00 0.00 32.50 3.41
211 212 2.879026 GCGGGGAGACTTTTATTCCATC 59.121 50.000 0.00 0.00 32.50 3.51
212 213 3.433740 GCGGGGAGACTTTTATTCCATCT 60.434 47.826 0.00 0.00 32.50 2.90
213 214 4.781934 CGGGGAGACTTTTATTCCATCTT 58.218 43.478 0.00 0.00 32.50 2.40
214 215 4.816925 CGGGGAGACTTTTATTCCATCTTC 59.183 45.833 0.00 0.00 32.50 2.87
215 216 5.629133 CGGGGAGACTTTTATTCCATCTTCA 60.629 44.000 0.00 0.00 32.50 3.02
216 217 5.825151 GGGGAGACTTTTATTCCATCTTCAG 59.175 44.000 0.00 0.00 32.50 3.02
217 218 5.825151 GGGAGACTTTTATTCCATCTTCAGG 59.175 44.000 0.00 0.00 32.50 3.86
218 219 5.825151 GGAGACTTTTATTCCATCTTCAGGG 59.175 44.000 0.00 0.00 0.00 4.45
219 220 6.353082 GGAGACTTTTATTCCATCTTCAGGGA 60.353 42.308 0.00 0.00 0.00 4.20
220 221 6.657875 AGACTTTTATTCCATCTTCAGGGAG 58.342 40.000 0.00 0.00 34.02 4.30
221 222 5.196695 ACTTTTATTCCATCTTCAGGGAGC 58.803 41.667 0.00 0.00 34.02 4.70
222 223 5.044550 ACTTTTATTCCATCTTCAGGGAGCT 60.045 40.000 0.00 0.00 34.02 4.09
223 224 6.158695 ACTTTTATTCCATCTTCAGGGAGCTA 59.841 38.462 0.00 0.00 34.02 3.32
224 225 5.815233 TTATTCCATCTTCAGGGAGCTAG 57.185 43.478 0.00 0.00 34.02 3.42
225 226 2.094100 TCCATCTTCAGGGAGCTAGG 57.906 55.000 0.00 0.00 0.00 3.02
226 227 1.575788 TCCATCTTCAGGGAGCTAGGA 59.424 52.381 0.00 0.00 0.00 2.94
227 228 1.691434 CCATCTTCAGGGAGCTAGGAC 59.309 57.143 0.00 0.00 0.00 3.85
228 229 2.392662 CATCTTCAGGGAGCTAGGACA 58.607 52.381 0.00 0.00 0.00 4.02
229 230 1.853963 TCTTCAGGGAGCTAGGACAC 58.146 55.000 0.00 0.00 0.00 3.67
230 231 1.077169 TCTTCAGGGAGCTAGGACACA 59.923 52.381 0.00 0.00 0.00 3.72
231 232 1.902508 CTTCAGGGAGCTAGGACACAA 59.097 52.381 0.00 0.00 0.00 3.33
232 233 2.024176 TCAGGGAGCTAGGACACAAA 57.976 50.000 0.00 0.00 0.00 2.83
233 234 1.623811 TCAGGGAGCTAGGACACAAAC 59.376 52.381 0.00 0.00 0.00 2.93
234 235 1.625818 CAGGGAGCTAGGACACAAACT 59.374 52.381 0.00 0.00 0.00 2.66
235 236 1.903183 AGGGAGCTAGGACACAAACTC 59.097 52.381 0.00 0.00 0.00 3.01
236 237 1.903183 GGGAGCTAGGACACAAACTCT 59.097 52.381 0.00 0.00 0.00 3.24
237 238 3.097614 GGGAGCTAGGACACAAACTCTA 58.902 50.000 0.00 0.00 0.00 2.43
238 239 3.514309 GGGAGCTAGGACACAAACTCTAA 59.486 47.826 0.00 0.00 0.00 2.10
239 240 4.020485 GGGAGCTAGGACACAAACTCTAAA 60.020 45.833 0.00 0.00 0.00 1.85
240 241 5.338463 GGGAGCTAGGACACAAACTCTAAAT 60.338 44.000 0.00 0.00 0.00 1.40
241 242 6.174049 GGAGCTAGGACACAAACTCTAAATT 58.826 40.000 0.00 0.00 0.00 1.82
248 249 6.206829 AGGACACAAACTCTAAATTAACCAGC 59.793 38.462 0.00 0.00 0.00 4.85
256 257 4.901868 TCTAAATTAACCAGCGTGAAGGT 58.098 39.130 0.00 0.00 40.61 3.50
265 266 2.425592 CGTGAAGGTGTGCCCTCA 59.574 61.111 0.00 0.00 45.47 3.86
266 268 1.003355 CGTGAAGGTGTGCCCTCAT 60.003 57.895 0.00 0.00 45.47 2.90
270 272 0.257039 GAAGGTGTGCCCTCATCCAT 59.743 55.000 0.00 0.00 45.47 3.41
274 276 0.819582 GTGTGCCCTCATCCATTTGG 59.180 55.000 0.00 0.00 0.00 3.28
417 437 3.936372 ACGCGTGCCACTATAGATTAT 57.064 42.857 12.93 0.00 0.00 1.28
422 442 4.623167 GCGTGCCACTATAGATTATCACAG 59.377 45.833 6.78 5.30 0.00 3.66
449 469 7.593644 CGAATATATTGACATGTTAGGTGTCGA 59.406 37.037 1.78 0.00 46.89 4.20
479 499 5.010112 TCAACTGGTCAAGTAGAGAGAGTTG 59.990 44.000 0.00 0.00 38.56 3.16
480 500 3.257127 ACTGGTCAAGTAGAGAGAGTTGC 59.743 47.826 0.00 0.00 37.36 4.17
551 584 2.185004 AACCTTCTTGATGGACACGG 57.815 50.000 9.17 0.00 0.00 4.94
573 866 1.170442 CACCCCACGTTTCAATACCC 58.830 55.000 0.00 0.00 0.00 3.69
589 1067 5.251468 TCAATACCCTATATGCATTGGCTCT 59.749 40.000 3.54 0.00 41.91 4.09
592 1070 5.582950 ACCCTATATGCATTGGCTCTTAA 57.417 39.130 3.54 0.00 41.91 1.85
619 1099 9.838975 AAATTGTTTTGAAATGAAGAACAAACC 57.161 25.926 4.37 0.00 41.70 3.27
634 1114 6.410540 AGAACAAACCTAAAAATTGCACCAA 58.589 32.000 0.00 0.00 0.00 3.67
668 1207 1.511887 CGCTTTTCGACATTGCCGG 60.512 57.895 0.00 0.00 41.67 6.13
675 1214 1.889105 CGACATTGCCGGCAGCTAT 60.889 57.895 30.75 18.28 44.23 2.97
676 1215 1.439353 CGACATTGCCGGCAGCTATT 61.439 55.000 30.75 13.48 44.23 1.73
688 1227 4.023279 CCGGCAGCTATTAAAATGTATGCA 60.023 41.667 0.00 0.00 34.17 3.96
703 1242 5.688348 TGTATGCAACAAACACGTTTTTC 57.312 34.783 0.00 0.00 34.29 2.29
708 1251 5.700846 TGCAACAAACACGTTTTTCTTCTA 58.299 33.333 0.00 0.00 0.00 2.10
774 1325 5.589452 AGCAGAGCCATCTTAAAGAAATGAG 59.411 40.000 0.00 0.00 31.64 2.90
907 1914 9.228949 TGTTTCCCGTTTAGCTTATAAATAACA 57.771 29.630 0.00 0.00 0.00 2.41
969 1981 3.363341 GCTAGCTAGCTTACTCCACAG 57.637 52.381 33.71 12.48 45.62 3.66
1077 2094 4.475135 GCCGTTCTGCTCTCCCCC 62.475 72.222 0.00 0.00 0.00 5.40
1080 2097 3.706373 GTTCTGCTCTCCCCCGCA 61.706 66.667 0.00 0.00 34.54 5.69
1398 2435 4.560856 GACATCTCGGCGCTCGCT 62.561 66.667 7.64 0.00 41.60 4.93
1464 2501 2.743718 CAGGGCCAGTTCGACAGT 59.256 61.111 6.18 0.00 0.00 3.55
2035 3090 0.178767 TTCTGCCTGATGTGGATCGG 59.821 55.000 0.00 0.00 35.02 4.18
2057 3112 0.452122 GATTAGCGTGCGTGCGTTTT 60.452 50.000 3.11 0.00 40.67 2.43
2063 3118 1.063488 GTGCGTGCGTTTTCTGGTT 59.937 52.632 0.00 0.00 0.00 3.67
2106 3161 1.086696 GTGCATGGCTTCGTGTATGT 58.913 50.000 0.00 0.00 0.00 2.29
2107 3162 1.468520 GTGCATGGCTTCGTGTATGTT 59.531 47.619 0.00 0.00 0.00 2.71
2134 3208 1.336424 TGATTTCTGCTCGCGTGTGTA 60.336 47.619 5.77 0.00 0.00 2.90
2144 3218 4.864248 CGTGTGTACGTGTGTTGC 57.136 55.556 0.00 0.00 44.99 4.17
2145 3219 2.293765 CGTGTGTACGTGTGTTGCT 58.706 52.632 0.00 0.00 44.99 3.91
2146 3220 0.043396 CGTGTGTACGTGTGTTGCTG 60.043 55.000 0.00 0.00 44.99 4.41
2147 3221 0.315869 GTGTGTACGTGTGTTGCTGC 60.316 55.000 0.00 0.00 0.00 5.25
2148 3222 0.461163 TGTGTACGTGTGTTGCTGCT 60.461 50.000 0.00 0.00 0.00 4.24
2149 3223 0.655733 GTGTACGTGTGTTGCTGCTT 59.344 50.000 0.00 0.00 0.00 3.91
2150 3224 1.862201 GTGTACGTGTGTTGCTGCTTA 59.138 47.619 0.00 0.00 0.00 3.09
2151 3225 2.285756 GTGTACGTGTGTTGCTGCTTAA 59.714 45.455 0.00 0.00 0.00 1.85
2154 3228 4.750598 TGTACGTGTGTTGCTGCTTAATTA 59.249 37.500 0.00 0.00 0.00 1.40
2157 3231 3.188460 CGTGTGTTGCTGCTTAATTAGGT 59.812 43.478 0.00 0.00 0.00 3.08
2227 3313 4.122046 GCTTGCTCAAGGTTCAACATTTT 58.878 39.130 11.15 0.00 38.80 1.82
2243 3329 9.844257 TTCAACATTTTAATGAAATTTCACCCT 57.156 25.926 22.71 12.66 40.49 4.34
2245 3331 9.054922 CAACATTTTAATGAAATTTCACCCTGT 57.945 29.630 22.71 15.91 40.49 4.00
2270 3365 5.416639 GGGTACCGATTTTTGTAACCTCAAT 59.583 40.000 5.65 0.00 40.87 2.57
2326 3421 9.769093 ACCAATTTAAAATTAAGACGAGATTCG 57.231 29.630 0.00 0.00 46.93 3.34
2375 3474 3.837213 AATCCGAAACAGTTGCTGATG 57.163 42.857 0.00 0.00 35.18 3.07
2388 3487 5.574055 CAGTTGCTGATGTTTCGCATATTTT 59.426 36.000 0.00 0.00 38.06 1.82
2398 3497 3.520290 TCGCATATTTTGACGAGGTCT 57.480 42.857 0.00 0.00 32.63 3.85
2413 3513 7.274447 TGACGAGGTCTAAAAGTTTCCTTAAA 58.726 34.615 0.00 0.00 33.15 1.52
2429 3529 9.772973 GTTTCCTTAAATGAAATTGTAAACCCT 57.227 29.630 3.85 0.00 36.10 4.34
2431 3531 9.990360 TTCCTTAAATGAAATTGTAAACCCTTC 57.010 29.630 0.00 0.00 36.10 3.46
2435 3535 9.974980 TTAAATGAAATTGTAAACCCTTCTGAC 57.025 29.630 0.00 0.00 36.10 3.51
2451 3551 4.624336 TCTGACAAGATTACGCTCTCTC 57.376 45.455 0.00 0.00 0.00 3.20
2452 3552 3.064134 TCTGACAAGATTACGCTCTCTCG 59.936 47.826 0.00 0.00 0.00 4.04
2453 3553 3.007635 TGACAAGATTACGCTCTCTCGA 58.992 45.455 0.00 0.00 0.00 4.04
2454 3554 3.628032 TGACAAGATTACGCTCTCTCGAT 59.372 43.478 0.00 0.00 0.00 3.59
2455 3555 4.215965 GACAAGATTACGCTCTCTCGATC 58.784 47.826 0.00 0.00 0.00 3.69
2465 3565 2.873472 GCTCTCTCGATCGGTTCTTAGA 59.127 50.000 16.41 8.47 0.00 2.10
2473 3573 6.530887 TCTCGATCGGTTCTTAGATAGATACG 59.469 42.308 16.41 0.00 35.15 3.06
2475 3575 7.315890 TCGATCGGTTCTTAGATAGATACGTA 58.684 38.462 16.41 0.00 35.29 3.57
2476 3576 7.274468 TCGATCGGTTCTTAGATAGATACGTAC 59.726 40.741 16.41 0.00 35.29 3.67
2477 3577 7.275341 CGATCGGTTCTTAGATAGATACGTACT 59.725 40.741 7.38 0.00 35.29 2.73
2478 3578 9.579768 GATCGGTTCTTAGATAGATACGTACTA 57.420 37.037 0.00 2.40 35.29 1.82
2516 3616 7.656542 AGGAAAGTGCACTTAGACTAAACTTAC 59.343 37.037 31.31 13.07 34.61 2.34
2590 3690 3.004315 AGTGTAAAGCATTTTGGTGACCG 59.996 43.478 0.00 0.00 40.09 4.79
2592 3692 0.033366 AAAGCATTTTGGTGACCGGC 59.967 50.000 0.00 0.00 31.62 6.13
2593 3693 1.112315 AAGCATTTTGGTGACCGGCA 61.112 50.000 0.00 0.00 0.00 5.69
2594 3694 1.372872 GCATTTTGGTGACCGGCAC 60.373 57.895 17.46 17.46 46.98 5.01
2603 3703 2.793278 GTGACCGGCACAGAATTTTT 57.207 45.000 19.85 0.00 46.91 1.94
2604 3704 2.393764 GTGACCGGCACAGAATTTTTG 58.606 47.619 19.85 0.00 46.91 2.44
2609 3721 4.508662 ACCGGCACAGAATTTTTGAAAAA 58.491 34.783 0.00 5.47 0.00 1.94
2637 3749 9.764363 AAAATCAAACTTCCCTATTCAGAAAAC 57.236 29.630 0.00 0.00 0.00 2.43
2638 3750 8.712228 AATCAAACTTCCCTATTCAGAAAACT 57.288 30.769 0.00 0.00 0.00 2.66
2640 3752 7.940850 TCAAACTTCCCTATTCAGAAAACTTG 58.059 34.615 0.00 0.00 0.00 3.16
2641 3753 7.777910 TCAAACTTCCCTATTCAGAAAACTTGA 59.222 33.333 0.00 0.00 0.00 3.02
2642 3754 8.413229 CAAACTTCCCTATTCAGAAAACTTGAA 58.587 33.333 0.00 0.00 38.76 2.69
2645 3757 8.414003 ACTTCCCTATTCAGAAAACTTGAAAAC 58.586 33.333 0.00 0.00 38.01 2.43
2647 3759 8.299990 TCCCTATTCAGAAAACTTGAAAACAA 57.700 30.769 0.00 0.00 38.01 2.83
2648 3760 8.754080 TCCCTATTCAGAAAACTTGAAAACAAA 58.246 29.630 0.00 0.00 38.01 2.83
2649 3761 9.377312 CCCTATTCAGAAAACTTGAAAACAAAA 57.623 29.630 0.00 0.00 38.01 2.44
2656 3770 8.842777 CAGAAAACTTGAAAACAAAATTGCAAG 58.157 29.630 4.94 6.28 38.81 4.01
2672 3786 9.729281 AAAATTGCAAGAATACAAGGATGAAAT 57.271 25.926 4.94 0.00 0.00 2.17
2730 3844 8.106247 ACATTGAAATACGACCTGTACAAAAT 57.894 30.769 0.00 0.00 35.44 1.82
2732 3846 9.485591 CATTGAAATACGACCTGTACAAAATAC 57.514 33.333 0.00 0.00 35.44 1.89
2733 3847 8.604640 TTGAAATACGACCTGTACAAAATACA 57.395 30.769 0.00 0.00 35.44 2.29
2738 3852 6.870971 ACGACCTGTACAAAATACACAAAT 57.129 33.333 0.00 0.00 0.00 2.32
2741 3855 7.012515 ACGACCTGTACAAAATACACAAATTCA 59.987 33.333 0.00 0.00 0.00 2.57
2742 3856 8.020819 CGACCTGTACAAAATACACAAATTCAT 58.979 33.333 0.00 0.00 0.00 2.57
2769 3883 9.703892 AGACTTTGAGTATGAATAGTATCATGC 57.296 33.333 0.23 0.00 40.21 4.06
2770 3884 9.481340 GACTTTGAGTATGAATAGTATCATGCA 57.519 33.333 7.85 0.00 42.68 3.96
2785 3899 7.151308 AGTATCATGCACTAAATAGACTCTGC 58.849 38.462 0.00 0.00 0.00 4.26
2786 3900 5.604758 TCATGCACTAAATAGACTCTGCT 57.395 39.130 0.00 0.00 0.00 4.24
2812 3926 4.751767 TTCTTTGCACAACCCTCATTTT 57.248 36.364 0.00 0.00 0.00 1.82
2813 3927 4.751767 TCTTTGCACAACCCTCATTTTT 57.248 36.364 0.00 0.00 0.00 1.94
2870 3984 8.286996 CACATTATGCCGCTATGTATATCTAC 57.713 38.462 0.00 0.00 31.64 2.59
2878 3992 6.258068 GCCGCTATGTATATCTACATTTTCCC 59.742 42.308 8.84 0.00 44.42 3.97
2879 3993 7.327975 CCGCTATGTATATCTACATTTTCCCA 58.672 38.462 8.84 0.00 44.42 4.37
2880 3994 7.492669 CCGCTATGTATATCTACATTTTCCCAG 59.507 40.741 8.84 1.71 44.42 4.45
2882 3996 9.944376 GCTATGTATATCTACATTTTCCCAGAA 57.056 33.333 8.84 0.00 44.42 3.02
2935 4049 8.379457 TGATGAATGTTGAAAATTGCAAATGA 57.621 26.923 1.71 0.00 0.00 2.57
2938 4052 7.640852 TGAATGTTGAAAATTGCAAATGAAGG 58.359 30.769 1.71 0.00 0.00 3.46
2943 4057 5.131784 TGAAAATTGCAAATGAAGGCCTTT 58.868 33.333 21.54 0.44 0.00 3.11
2953 4067 5.379706 AATGAAGGCCTTTATGTAGCTCT 57.620 39.130 22.43 3.17 0.00 4.09
2954 4068 4.844349 TGAAGGCCTTTATGTAGCTCTT 57.156 40.909 21.54 0.00 0.00 2.85
2955 4069 5.179452 TGAAGGCCTTTATGTAGCTCTTT 57.821 39.130 21.54 0.00 0.00 2.52
2956 4070 5.570320 TGAAGGCCTTTATGTAGCTCTTTT 58.430 37.500 21.54 0.00 0.00 2.27
2957 4071 6.010219 TGAAGGCCTTTATGTAGCTCTTTTT 58.990 36.000 21.54 0.00 0.00 1.94
2975 4089 2.522271 TTTTTGCGGGAAAAGGCCT 58.478 47.368 0.00 0.00 34.96 5.19
2976 4090 0.833949 TTTTTGCGGGAAAAGGCCTT 59.166 45.000 13.78 13.78 34.96 4.35
2977 4091 0.833949 TTTTGCGGGAAAAGGCCTTT 59.166 45.000 25.47 25.47 0.00 3.11
2978 4092 1.705873 TTTGCGGGAAAAGGCCTTTA 58.294 45.000 30.59 11.65 31.63 1.85
2979 4093 1.931635 TTGCGGGAAAAGGCCTTTAT 58.068 45.000 30.59 19.84 31.63 1.40
2980 4094 1.181786 TGCGGGAAAAGGCCTTTATG 58.818 50.000 30.59 19.91 31.63 1.90
2981 4095 1.182667 GCGGGAAAAGGCCTTTATGT 58.817 50.000 30.59 15.98 31.63 2.29
2982 4096 2.291024 TGCGGGAAAAGGCCTTTATGTA 60.291 45.455 30.59 16.46 31.63 2.29
2983 4097 2.357952 GCGGGAAAAGGCCTTTATGTAG 59.642 50.000 30.59 20.27 31.63 2.74
2984 4098 2.357952 CGGGAAAAGGCCTTTATGTAGC 59.642 50.000 30.59 14.94 31.63 3.58
2985 4099 3.632333 GGGAAAAGGCCTTTATGTAGCT 58.368 45.455 30.59 13.61 31.63 3.32
2986 4100 3.632604 GGGAAAAGGCCTTTATGTAGCTC 59.367 47.826 30.59 20.88 31.63 4.09
2987 4101 3.312697 GGAAAAGGCCTTTATGTAGCTCG 59.687 47.826 30.59 0.00 31.63 5.03
2988 4102 2.622064 AAGGCCTTTATGTAGCTCGG 57.378 50.000 13.78 0.00 0.00 4.63
2989 4103 0.106894 AGGCCTTTATGTAGCTCGGC 59.893 55.000 0.00 0.00 36.83 5.54
2990 4104 2.618165 GCCTTTATGTAGCTCGGCC 58.382 57.895 0.00 0.00 0.00 6.13
2991 4105 0.106894 GCCTTTATGTAGCTCGGCCT 59.893 55.000 0.00 0.00 0.00 5.19
2992 4106 1.874320 GCCTTTATGTAGCTCGGCCTC 60.874 57.143 0.00 0.00 0.00 4.70
2993 4107 1.270358 CCTTTATGTAGCTCGGCCTCC 60.270 57.143 0.00 0.00 0.00 4.30
2994 4108 1.412710 CTTTATGTAGCTCGGCCTCCA 59.587 52.381 0.00 0.00 0.00 3.86
2995 4109 1.491668 TTATGTAGCTCGGCCTCCAA 58.508 50.000 0.00 0.00 0.00 3.53
2996 4110 1.491668 TATGTAGCTCGGCCTCCAAA 58.508 50.000 0.00 0.00 0.00 3.28
2997 4111 0.618458 ATGTAGCTCGGCCTCCAAAA 59.382 50.000 0.00 0.00 0.00 2.44
2998 4112 0.036388 TGTAGCTCGGCCTCCAAAAG 60.036 55.000 0.00 0.00 0.00 2.27
2999 4113 1.078426 TAGCTCGGCCTCCAAAAGC 60.078 57.895 0.00 0.00 0.00 3.51
3000 4114 1.836999 TAGCTCGGCCTCCAAAAGCA 61.837 55.000 0.00 0.00 35.42 3.91
3001 4115 2.268076 GCTCGGCCTCCAAAAGCAA 61.268 57.895 0.00 0.00 33.21 3.91
3002 4116 1.598701 GCTCGGCCTCCAAAAGCAAT 61.599 55.000 0.00 0.00 33.21 3.56
3003 4117 0.890683 CTCGGCCTCCAAAAGCAATT 59.109 50.000 0.00 0.00 0.00 2.32
3004 4118 1.273327 CTCGGCCTCCAAAAGCAATTT 59.727 47.619 0.00 0.00 0.00 1.82
3005 4119 1.691434 TCGGCCTCCAAAAGCAATTTT 59.309 42.857 0.00 0.00 0.00 1.82
3006 4120 2.103941 TCGGCCTCCAAAAGCAATTTTT 59.896 40.909 0.00 0.00 39.55 1.94
3020 4134 8.449251 AAAGCAATTTTTGATTTCTTTAGCCA 57.551 26.923 0.00 0.00 45.14 4.75
3021 4135 8.625786 AAGCAATTTTTGATTTCTTTAGCCAT 57.374 26.923 0.00 0.00 35.42 4.40
3022 4136 9.723601 AAGCAATTTTTGATTTCTTTAGCCATA 57.276 25.926 0.00 0.00 35.42 2.74
3023 4137 9.723601 AGCAATTTTTGATTTCTTTAGCCATAA 57.276 25.926 0.00 0.00 0.00 1.90
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 1.302832 CTGTTCTGGGGTGCTGGTC 60.303 63.158 0.00 0.00 0.00 4.02
1 2 2.839098 CTGTTCTGGGGTGCTGGT 59.161 61.111 0.00 0.00 0.00 4.00
2 3 2.674380 GCTGTTCTGGGGTGCTGG 60.674 66.667 0.00 0.00 0.00 4.85
3 4 1.529010 TTGCTGTTCTGGGGTGCTG 60.529 57.895 0.00 0.00 0.00 4.41
5 6 2.564721 GGTTGCTGTTCTGGGGTGC 61.565 63.158 0.00 0.00 0.00 5.01
6 7 2.260869 CGGTTGCTGTTCTGGGGTG 61.261 63.158 0.00 0.00 0.00 4.61
7 8 2.113139 CGGTTGCTGTTCTGGGGT 59.887 61.111 0.00 0.00 0.00 4.95
8 9 3.365265 GCGGTTGCTGTTCTGGGG 61.365 66.667 0.00 0.00 38.39 4.96
9 10 3.365265 GGCGGTTGCTGTTCTGGG 61.365 66.667 0.00 0.00 42.25 4.45
10 11 3.726517 CGGCGGTTGCTGTTCTGG 61.727 66.667 0.00 0.00 42.79 3.86
19 20 2.465097 TTTTTCATCGGCGGCGGTTG 62.465 55.000 31.73 26.46 0.00 3.77
20 21 1.591504 ATTTTTCATCGGCGGCGGTT 61.592 50.000 31.73 16.58 0.00 4.44
21 22 0.745128 TATTTTTCATCGGCGGCGGT 60.745 50.000 31.73 23.77 0.00 5.68
22 23 0.378962 TTATTTTTCATCGGCGGCGG 59.621 50.000 31.73 16.54 0.00 6.13
23 24 1.462791 GTTATTTTTCATCGGCGGCG 58.537 50.000 27.15 27.15 0.00 6.46
24 25 1.202098 ACGTTATTTTTCATCGGCGGC 60.202 47.619 7.21 0.00 0.00 6.53
25 26 2.817538 ACGTTATTTTTCATCGGCGG 57.182 45.000 7.21 0.00 0.00 6.13
26 27 4.765281 TCTACGTTATTTTTCATCGGCG 57.235 40.909 0.00 0.00 0.00 6.46
27 28 5.174398 TCGATCTACGTTATTTTTCATCGGC 59.826 40.000 0.00 0.00 43.13 5.54
28 29 6.742999 TCGATCTACGTTATTTTTCATCGG 57.257 37.500 0.00 0.00 43.13 4.18
29 30 8.529102 TCTTTCGATCTACGTTATTTTTCATCG 58.471 33.333 0.00 0.00 43.13 3.84
33 34 9.634300 GGATTCTTTCGATCTACGTTATTTTTC 57.366 33.333 0.00 0.00 43.13 2.29
34 35 9.158233 TGGATTCTTTCGATCTACGTTATTTTT 57.842 29.630 0.00 0.00 43.13 1.94
35 36 8.712285 TGGATTCTTTCGATCTACGTTATTTT 57.288 30.769 0.00 0.00 43.13 1.82
36 37 8.712285 TTGGATTCTTTCGATCTACGTTATTT 57.288 30.769 0.00 0.00 43.13 1.40
37 38 8.601476 GTTTGGATTCTTTCGATCTACGTTATT 58.399 33.333 0.00 0.00 43.13 1.40
38 39 7.224167 GGTTTGGATTCTTTCGATCTACGTTAT 59.776 37.037 0.00 0.00 43.13 1.89
39 40 6.532657 GGTTTGGATTCTTTCGATCTACGTTA 59.467 38.462 0.00 0.00 43.13 3.18
40 41 5.350640 GGTTTGGATTCTTTCGATCTACGTT 59.649 40.000 0.00 0.00 43.13 3.99
41 42 4.868734 GGTTTGGATTCTTTCGATCTACGT 59.131 41.667 0.00 0.00 43.13 3.57
42 43 4.026804 CGGTTTGGATTCTTTCGATCTACG 60.027 45.833 0.00 0.00 44.09 3.51
43 44 5.107133 TCGGTTTGGATTCTTTCGATCTAC 58.893 41.667 0.00 0.00 0.00 2.59
44 45 5.333299 TCGGTTTGGATTCTTTCGATCTA 57.667 39.130 0.00 0.00 0.00 1.98
45 46 4.202245 TCGGTTTGGATTCTTTCGATCT 57.798 40.909 0.00 0.00 0.00 2.75
46 47 4.630069 TCTTCGGTTTGGATTCTTTCGATC 59.370 41.667 0.00 0.00 0.00 3.69
47 48 4.392138 GTCTTCGGTTTGGATTCTTTCGAT 59.608 41.667 0.00 0.00 0.00 3.59
48 49 3.744426 GTCTTCGGTTTGGATTCTTTCGA 59.256 43.478 0.00 0.00 0.00 3.71
49 50 3.496884 TGTCTTCGGTTTGGATTCTTTCG 59.503 43.478 0.00 0.00 0.00 3.46
50 51 5.629079 ATGTCTTCGGTTTGGATTCTTTC 57.371 39.130 0.00 0.00 0.00 2.62
51 52 5.121768 CGTATGTCTTCGGTTTGGATTCTTT 59.878 40.000 0.00 0.00 0.00 2.52
52 53 4.630069 CGTATGTCTTCGGTTTGGATTCTT 59.370 41.667 0.00 0.00 0.00 2.52
53 54 4.081862 TCGTATGTCTTCGGTTTGGATTCT 60.082 41.667 0.00 0.00 0.00 2.40
54 55 4.178540 TCGTATGTCTTCGGTTTGGATTC 58.821 43.478 0.00 0.00 0.00 2.52
55 56 4.196626 TCGTATGTCTTCGGTTTGGATT 57.803 40.909 0.00 0.00 0.00 3.01
56 57 3.880047 TCGTATGTCTTCGGTTTGGAT 57.120 42.857 0.00 0.00 0.00 3.41
57 58 3.319755 GTTCGTATGTCTTCGGTTTGGA 58.680 45.455 0.00 0.00 0.00 3.53
58 59 2.091588 CGTTCGTATGTCTTCGGTTTGG 59.908 50.000 0.00 0.00 0.00 3.28
59 60 2.727798 ACGTTCGTATGTCTTCGGTTTG 59.272 45.455 0.00 0.00 0.00 2.93
60 61 3.017265 ACGTTCGTATGTCTTCGGTTT 57.983 42.857 0.00 0.00 0.00 3.27
61 62 2.712057 ACGTTCGTATGTCTTCGGTT 57.288 45.000 0.00 0.00 0.00 4.44
62 63 3.002791 TCTACGTTCGTATGTCTTCGGT 58.997 45.455 5.55 0.00 0.00 4.69
63 64 3.349176 GTCTACGTTCGTATGTCTTCGG 58.651 50.000 5.55 0.00 0.00 4.30
64 65 3.018246 CGTCTACGTTCGTATGTCTTCG 58.982 50.000 5.55 0.00 34.11 3.79
65 66 4.250570 TCGTCTACGTTCGTATGTCTTC 57.749 45.455 5.55 0.00 40.80 2.87
66 67 4.083855 TGTTCGTCTACGTTCGTATGTCTT 60.084 41.667 5.55 0.00 40.80 3.01
67 68 3.433274 TGTTCGTCTACGTTCGTATGTCT 59.567 43.478 5.55 0.00 40.80 3.41
68 69 3.736213 TGTTCGTCTACGTTCGTATGTC 58.264 45.455 5.55 0.15 40.80 3.06
69 70 3.811722 TGTTCGTCTACGTTCGTATGT 57.188 42.857 5.55 0.00 40.80 2.29
70 71 3.003696 CGTTGTTCGTCTACGTTCGTATG 60.004 47.826 5.55 1.59 39.58 2.39
71 72 3.120683 TCGTTGTTCGTCTACGTTCGTAT 60.121 43.478 5.55 0.00 43.41 3.06
72 73 2.219903 TCGTTGTTCGTCTACGTTCGTA 59.780 45.455 0.00 5.02 43.41 3.43
73 74 1.003972 TCGTTGTTCGTCTACGTTCGT 60.004 47.619 0.00 2.91 43.41 3.85
74 75 1.376856 GTCGTTGTTCGTCTACGTTCG 59.623 52.381 0.00 0.00 43.41 3.95
75 76 1.376856 CGTCGTTGTTCGTCTACGTTC 59.623 52.381 0.00 0.00 43.41 3.95
76 77 1.003972 TCGTCGTTGTTCGTCTACGTT 60.004 47.619 0.00 0.00 43.41 3.99
77 78 0.581529 TCGTCGTTGTTCGTCTACGT 59.418 50.000 2.02 0.00 43.41 3.57
78 79 1.136529 TCTCGTCGTTGTTCGTCTACG 60.137 52.381 0.00 0.00 44.05 3.51
79 80 2.584166 TCTCGTCGTTGTTCGTCTAC 57.416 50.000 0.00 0.00 40.80 2.59
80 81 2.094894 GGATCTCGTCGTTGTTCGTCTA 59.905 50.000 0.00 0.00 40.80 2.59
81 82 1.135746 GGATCTCGTCGTTGTTCGTCT 60.136 52.381 0.00 0.00 40.80 4.18
82 83 1.257539 GGATCTCGTCGTTGTTCGTC 58.742 55.000 0.00 0.00 40.80 4.20
83 84 0.453950 CGGATCTCGTCGTTGTTCGT 60.454 55.000 0.00 0.00 40.80 3.85
84 85 0.179207 TCGGATCTCGTCGTTGTTCG 60.179 55.000 0.00 0.00 40.32 3.95
85 86 1.536149 CTCGGATCTCGTCGTTGTTC 58.464 55.000 0.00 0.00 40.32 3.18
86 87 0.456312 GCTCGGATCTCGTCGTTGTT 60.456 55.000 0.00 0.00 40.32 2.83
87 88 1.136984 GCTCGGATCTCGTCGTTGT 59.863 57.895 0.00 0.00 40.32 3.32
88 89 0.456142 TTGCTCGGATCTCGTCGTTG 60.456 55.000 0.00 0.00 40.32 4.10
89 90 0.242825 TTTGCTCGGATCTCGTCGTT 59.757 50.000 0.00 0.00 40.32 3.85
90 91 0.456221 ATTTGCTCGGATCTCGTCGT 59.544 50.000 0.00 0.00 40.32 4.34
91 92 1.124462 GATTTGCTCGGATCTCGTCG 58.876 55.000 0.00 0.00 40.32 5.12
92 93 1.202417 TGGATTTGCTCGGATCTCGTC 60.202 52.381 0.00 0.00 40.32 4.20
93 94 0.824109 TGGATTTGCTCGGATCTCGT 59.176 50.000 0.00 0.00 40.32 4.18
94 95 1.212616 GTGGATTTGCTCGGATCTCG 58.787 55.000 0.00 0.00 40.90 4.04
95 96 1.134401 TGGTGGATTTGCTCGGATCTC 60.134 52.381 0.00 0.00 0.00 2.75
96 97 0.911769 TGGTGGATTTGCTCGGATCT 59.088 50.000 0.00 0.00 0.00 2.75
97 98 1.750193 TTGGTGGATTTGCTCGGATC 58.250 50.000 0.00 0.00 0.00 3.36
98 99 2.094675 CTTTGGTGGATTTGCTCGGAT 58.905 47.619 0.00 0.00 0.00 4.18
99 100 1.073125 TCTTTGGTGGATTTGCTCGGA 59.927 47.619 0.00 0.00 0.00 4.55
100 101 1.533625 TCTTTGGTGGATTTGCTCGG 58.466 50.000 0.00 0.00 0.00 4.63
101 102 4.191544 TCTATCTTTGGTGGATTTGCTCG 58.808 43.478 0.00 0.00 0.00 5.03
102 103 6.017275 CAGATCTATCTTTGGTGGATTTGCTC 60.017 42.308 0.00 0.00 34.22 4.26
103 104 5.826737 CAGATCTATCTTTGGTGGATTTGCT 59.173 40.000 0.00 0.00 34.22 3.91
104 105 5.506982 GCAGATCTATCTTTGGTGGATTTGC 60.507 44.000 0.00 4.53 37.36 3.68
105 106 5.009410 GGCAGATCTATCTTTGGTGGATTTG 59.991 44.000 0.00 0.00 34.22 2.32
106 107 5.136105 GGCAGATCTATCTTTGGTGGATTT 58.864 41.667 0.00 0.00 34.22 2.17
107 108 4.723309 GGCAGATCTATCTTTGGTGGATT 58.277 43.478 0.00 0.00 34.22 3.01
108 109 3.244353 CGGCAGATCTATCTTTGGTGGAT 60.244 47.826 0.00 0.00 34.22 3.41
109 110 2.103094 CGGCAGATCTATCTTTGGTGGA 59.897 50.000 0.00 0.00 34.22 4.02
110 111 2.487934 CGGCAGATCTATCTTTGGTGG 58.512 52.381 0.00 0.00 34.22 4.61
111 112 2.103094 TCCGGCAGATCTATCTTTGGTG 59.897 50.000 0.00 0.00 34.22 4.17
112 113 2.366916 CTCCGGCAGATCTATCTTTGGT 59.633 50.000 0.00 0.00 34.22 3.67
113 114 2.630098 TCTCCGGCAGATCTATCTTTGG 59.370 50.000 0.00 0.00 34.22 3.28
114 115 3.068732 TGTCTCCGGCAGATCTATCTTTG 59.931 47.826 0.00 0.00 34.22 2.77
115 116 3.068873 GTGTCTCCGGCAGATCTATCTTT 59.931 47.826 0.00 0.00 34.22 2.52
116 117 2.625790 GTGTCTCCGGCAGATCTATCTT 59.374 50.000 0.00 0.00 34.22 2.40
117 118 2.235016 GTGTCTCCGGCAGATCTATCT 58.765 52.381 0.00 0.00 37.72 1.98
118 119 1.957177 TGTGTCTCCGGCAGATCTATC 59.043 52.381 0.00 0.00 32.08 2.08
119 120 1.683917 GTGTGTCTCCGGCAGATCTAT 59.316 52.381 0.00 0.00 32.08 1.98
120 121 1.103803 GTGTGTCTCCGGCAGATCTA 58.896 55.000 0.00 0.00 32.08 1.98
121 122 1.608717 GGTGTGTCTCCGGCAGATCT 61.609 60.000 0.00 0.00 32.08 2.75
122 123 1.153549 GGTGTGTCTCCGGCAGATC 60.154 63.158 0.00 0.04 32.08 2.75
123 124 1.194781 AAGGTGTGTCTCCGGCAGAT 61.195 55.000 0.00 0.00 32.08 2.90
124 125 1.816863 GAAGGTGTGTCTCCGGCAGA 61.817 60.000 0.00 0.00 0.00 4.26
125 126 1.374758 GAAGGTGTGTCTCCGGCAG 60.375 63.158 0.00 0.00 0.00 4.85
126 127 2.137528 TGAAGGTGTGTCTCCGGCA 61.138 57.895 0.00 0.00 0.00 5.69
127 128 1.668151 GTGAAGGTGTGTCTCCGGC 60.668 63.158 0.00 0.00 0.00 6.13
128 129 0.600255 GTGTGAAGGTGTGTCTCCGG 60.600 60.000 0.00 0.00 0.00 5.14
129 130 0.939577 CGTGTGAAGGTGTGTCTCCG 60.940 60.000 0.00 0.00 0.00 4.63
130 131 1.222115 GCGTGTGAAGGTGTGTCTCC 61.222 60.000 0.00 0.00 0.00 3.71
131 132 1.222115 GGCGTGTGAAGGTGTGTCTC 61.222 60.000 0.00 0.00 0.00 3.36
132 133 1.227556 GGCGTGTGAAGGTGTGTCT 60.228 57.895 0.00 0.00 0.00 3.41
133 134 2.251642 GGGCGTGTGAAGGTGTGTC 61.252 63.158 0.00 0.00 0.00 3.67
134 135 2.203153 GGGCGTGTGAAGGTGTGT 60.203 61.111 0.00 0.00 0.00 3.72
135 136 2.203139 TGGGCGTGTGAAGGTGTG 60.203 61.111 0.00 0.00 0.00 3.82
136 137 2.203153 GTGGGCGTGTGAAGGTGT 60.203 61.111 0.00 0.00 0.00 4.16
137 138 2.978010 GGTGGGCGTGTGAAGGTG 60.978 66.667 0.00 0.00 0.00 4.00
138 139 3.050354 TTGGTGGGCGTGTGAAGGT 62.050 57.895 0.00 0.00 0.00 3.50
139 140 2.203280 TTGGTGGGCGTGTGAAGG 60.203 61.111 0.00 0.00 0.00 3.46
140 141 2.892334 CGTTGGTGGGCGTGTGAAG 61.892 63.158 0.00 0.00 0.00 3.02
141 142 2.668185 ATCGTTGGTGGGCGTGTGAA 62.668 55.000 0.00 0.00 0.00 3.18
142 143 3.171828 ATCGTTGGTGGGCGTGTGA 62.172 57.895 0.00 0.00 0.00 3.58
143 144 2.668212 ATCGTTGGTGGGCGTGTG 60.668 61.111 0.00 0.00 0.00 3.82
144 145 2.668212 CATCGTTGGTGGGCGTGT 60.668 61.111 0.00 0.00 0.00 4.49
145 146 4.101790 GCATCGTTGGTGGGCGTG 62.102 66.667 0.00 0.00 0.00 5.34
146 147 2.852495 CTAGCATCGTTGGTGGGCGT 62.852 60.000 8.40 0.00 34.79 5.68
147 148 2.125310 TAGCATCGTTGGTGGGCG 60.125 61.111 8.40 0.00 34.79 6.13
148 149 1.090052 GTCTAGCATCGTTGGTGGGC 61.090 60.000 8.40 3.19 34.79 5.36
149 150 0.806102 CGTCTAGCATCGTTGGTGGG 60.806 60.000 8.40 2.07 34.79 4.61
150 151 2.665777 CGTCTAGCATCGTTGGTGG 58.334 57.895 8.40 5.61 34.79 4.61
162 163 4.124351 TTCCGGCGGTGCGTCTAG 62.124 66.667 27.32 0.00 0.00 2.43
163 164 4.424566 GTTCCGGCGGTGCGTCTA 62.425 66.667 27.32 0.36 0.00 2.59
173 174 4.222847 CCTAGCCCTCGTTCCGGC 62.223 72.222 0.00 0.00 46.09 6.13
174 175 4.222847 GCCTAGCCCTCGTTCCGG 62.223 72.222 0.00 0.00 0.00 5.14
175 176 4.570663 CGCCTAGCCCTCGTTCCG 62.571 72.222 0.00 0.00 0.00 4.30
176 177 4.222847 CCGCCTAGCCCTCGTTCC 62.223 72.222 0.00 0.00 0.00 3.62
177 178 4.222847 CCCGCCTAGCCCTCGTTC 62.223 72.222 0.00 0.00 0.00 3.95
181 182 4.541648 TCTCCCCGCCTAGCCCTC 62.542 72.222 0.00 0.00 0.00 4.30
182 183 4.862823 GTCTCCCCGCCTAGCCCT 62.863 72.222 0.00 0.00 0.00 5.19
183 184 4.862823 AGTCTCCCCGCCTAGCCC 62.863 72.222 0.00 0.00 0.00 5.19
184 185 1.911702 AAAAGTCTCCCCGCCTAGCC 61.912 60.000 0.00 0.00 0.00 3.93
185 186 0.828677 TAAAAGTCTCCCCGCCTAGC 59.171 55.000 0.00 0.00 0.00 3.42
186 187 3.494573 GGAATAAAAGTCTCCCCGCCTAG 60.495 52.174 0.00 0.00 0.00 3.02
187 188 2.436911 GGAATAAAAGTCTCCCCGCCTA 59.563 50.000 0.00 0.00 0.00 3.93
188 189 1.212195 GGAATAAAAGTCTCCCCGCCT 59.788 52.381 0.00 0.00 0.00 5.52
189 190 1.064979 TGGAATAAAAGTCTCCCCGCC 60.065 52.381 0.00 0.00 0.00 6.13
190 191 2.413310 TGGAATAAAAGTCTCCCCGC 57.587 50.000 0.00 0.00 0.00 6.13
191 192 4.423625 AGATGGAATAAAAGTCTCCCCG 57.576 45.455 0.00 0.00 0.00 5.73
192 193 5.755849 TGAAGATGGAATAAAAGTCTCCCC 58.244 41.667 0.00 0.00 0.00 4.81
193 194 5.825151 CCTGAAGATGGAATAAAAGTCTCCC 59.175 44.000 0.00 0.00 0.00 4.30
194 195 5.825151 CCCTGAAGATGGAATAAAAGTCTCC 59.175 44.000 0.00 0.00 0.00 3.71
195 196 6.653989 TCCCTGAAGATGGAATAAAAGTCTC 58.346 40.000 0.00 0.00 0.00 3.36
196 197 6.642733 TCCCTGAAGATGGAATAAAAGTCT 57.357 37.500 0.00 0.00 0.00 3.24
197 198 5.298026 GCTCCCTGAAGATGGAATAAAAGTC 59.702 44.000 0.00 0.00 0.00 3.01
198 199 5.044550 AGCTCCCTGAAGATGGAATAAAAGT 60.045 40.000 0.00 0.00 0.00 2.66
199 200 5.444176 AGCTCCCTGAAGATGGAATAAAAG 58.556 41.667 0.00 0.00 0.00 2.27
200 201 5.456921 AGCTCCCTGAAGATGGAATAAAA 57.543 39.130 0.00 0.00 0.00 1.52
201 202 5.072329 CCTAGCTCCCTGAAGATGGAATAAA 59.928 44.000 0.00 0.00 0.00 1.40
202 203 4.594920 CCTAGCTCCCTGAAGATGGAATAA 59.405 45.833 0.00 0.00 0.00 1.40
203 204 4.140686 TCCTAGCTCCCTGAAGATGGAATA 60.141 45.833 0.00 0.00 0.00 1.75
204 205 2.978278 CCTAGCTCCCTGAAGATGGAAT 59.022 50.000 0.00 0.00 0.00 3.01
205 206 2.023015 TCCTAGCTCCCTGAAGATGGAA 60.023 50.000 0.00 0.00 0.00 3.53
206 207 1.575788 TCCTAGCTCCCTGAAGATGGA 59.424 52.381 0.00 0.00 0.00 3.41
207 208 1.691434 GTCCTAGCTCCCTGAAGATGG 59.309 57.143 0.00 0.00 0.00 3.51
208 209 2.102252 GTGTCCTAGCTCCCTGAAGATG 59.898 54.545 0.00 0.00 0.00 2.90
209 210 2.292521 TGTGTCCTAGCTCCCTGAAGAT 60.293 50.000 0.00 0.00 0.00 2.40
210 211 1.077169 TGTGTCCTAGCTCCCTGAAGA 59.923 52.381 0.00 0.00 0.00 2.87
211 212 1.561643 TGTGTCCTAGCTCCCTGAAG 58.438 55.000 0.00 0.00 0.00 3.02
212 213 2.024176 TTGTGTCCTAGCTCCCTGAA 57.976 50.000 0.00 0.00 0.00 3.02
213 214 1.623811 GTTTGTGTCCTAGCTCCCTGA 59.376 52.381 0.00 0.00 0.00 3.86
214 215 1.625818 AGTTTGTGTCCTAGCTCCCTG 59.374 52.381 0.00 0.00 0.00 4.45
215 216 1.903183 GAGTTTGTGTCCTAGCTCCCT 59.097 52.381 0.00 0.00 0.00 4.20
216 217 1.903183 AGAGTTTGTGTCCTAGCTCCC 59.097 52.381 0.00 0.00 0.00 4.30
217 218 4.803098 TTAGAGTTTGTGTCCTAGCTCC 57.197 45.455 0.00 0.00 0.00 4.70
218 219 8.657729 GTTAATTTAGAGTTTGTGTCCTAGCTC 58.342 37.037 0.00 0.00 0.00 4.09
219 220 7.606839 GGTTAATTTAGAGTTTGTGTCCTAGCT 59.393 37.037 0.00 0.00 0.00 3.32
220 221 7.389607 TGGTTAATTTAGAGTTTGTGTCCTAGC 59.610 37.037 0.00 0.00 0.00 3.42
221 222 8.842358 TGGTTAATTTAGAGTTTGTGTCCTAG 57.158 34.615 0.00 0.00 0.00 3.02
222 223 7.389607 GCTGGTTAATTTAGAGTTTGTGTCCTA 59.610 37.037 0.00 0.00 0.00 2.94
223 224 6.206829 GCTGGTTAATTTAGAGTTTGTGTCCT 59.793 38.462 0.00 0.00 0.00 3.85
224 225 6.379386 GCTGGTTAATTTAGAGTTTGTGTCC 58.621 40.000 0.00 0.00 0.00 4.02
225 226 6.077838 CGCTGGTTAATTTAGAGTTTGTGTC 58.922 40.000 0.00 0.00 0.00 3.67
226 227 5.529800 ACGCTGGTTAATTTAGAGTTTGTGT 59.470 36.000 0.00 0.00 0.00 3.72
227 228 5.851177 CACGCTGGTTAATTTAGAGTTTGTG 59.149 40.000 0.00 0.00 0.00 3.33
228 229 5.761234 TCACGCTGGTTAATTTAGAGTTTGT 59.239 36.000 0.00 0.00 0.00 2.83
229 230 6.236017 TCACGCTGGTTAATTTAGAGTTTG 57.764 37.500 0.00 0.00 0.00 2.93
230 231 6.072673 CCTTCACGCTGGTTAATTTAGAGTTT 60.073 38.462 0.00 0.00 0.00 2.66
231 232 5.411669 CCTTCACGCTGGTTAATTTAGAGTT 59.588 40.000 0.00 0.00 0.00 3.01
232 233 4.935808 CCTTCACGCTGGTTAATTTAGAGT 59.064 41.667 0.00 0.00 0.00 3.24
233 234 4.935808 ACCTTCACGCTGGTTAATTTAGAG 59.064 41.667 0.00 0.00 31.62 2.43
234 235 4.693566 CACCTTCACGCTGGTTAATTTAGA 59.306 41.667 0.00 0.00 33.75 2.10
235 236 4.454504 ACACCTTCACGCTGGTTAATTTAG 59.545 41.667 0.00 0.00 33.75 1.85
236 237 4.214545 CACACCTTCACGCTGGTTAATTTA 59.785 41.667 0.00 0.00 33.75 1.40
237 238 3.004315 CACACCTTCACGCTGGTTAATTT 59.996 43.478 0.00 0.00 33.75 1.82
238 239 2.552315 CACACCTTCACGCTGGTTAATT 59.448 45.455 0.00 0.00 33.75 1.40
239 240 2.151202 CACACCTTCACGCTGGTTAAT 58.849 47.619 0.00 0.00 33.75 1.40
240 241 1.588674 CACACCTTCACGCTGGTTAA 58.411 50.000 0.00 0.00 33.75 2.01
241 242 0.882927 GCACACCTTCACGCTGGTTA 60.883 55.000 0.00 0.00 33.75 2.85
256 257 0.703488 TCCAAATGGATGAGGGCACA 59.297 50.000 0.00 0.00 39.78 4.57
265 266 4.468510 ACAGTCATTGCATTCCAAATGGAT 59.531 37.500 2.38 0.00 44.98 3.41
266 268 3.833650 ACAGTCATTGCATTCCAAATGGA 59.166 39.130 0.00 0.00 43.73 3.41
270 272 4.826733 ACTACACAGTCATTGCATTCCAAA 59.173 37.500 0.00 0.00 36.92 3.28
274 276 5.853282 GTCAAACTACACAGTCATTGCATTC 59.147 40.000 0.00 0.00 32.29 2.67
345 362 9.904198 TTGTTCAATGATAATATTCTCCACTGA 57.096 29.630 0.00 0.00 0.00 3.41
417 437 7.384932 CCTAACATGTCAATATATTCGCTGTGA 59.615 37.037 0.00 0.00 0.00 3.58
422 442 7.421530 ACACCTAACATGTCAATATATTCGC 57.578 36.000 0.00 0.00 0.00 4.70
449 469 6.486056 TCTCTACTTGACCAGTTGATAGAGT 58.514 40.000 0.00 0.00 36.76 3.24
479 499 6.260050 TCTTCAAAGATAATATTGTCCACCGC 59.740 38.462 8.45 0.00 0.00 5.68
480 500 7.786178 TCTTCAAAGATAATATTGTCCACCG 57.214 36.000 8.45 0.00 0.00 4.94
551 584 1.808343 GTATTGAAACGTGGGGTGGTC 59.192 52.381 0.00 0.00 0.00 4.02
573 866 9.754382 ACAATTTTTAAGAGCCAATGCATATAG 57.246 29.630 0.00 0.00 41.13 1.31
668 1207 7.754069 TTGTTGCATACATTTTAATAGCTGC 57.246 32.000 0.00 0.00 36.44 5.25
675 1214 7.757097 AACGTGTTTGTTGCATACATTTTAA 57.243 28.000 0.00 0.00 36.44 1.52
676 1215 7.757097 AAACGTGTTTGTTGCATACATTTTA 57.243 28.000 0.00 0.00 36.44 1.52
688 1227 9.198837 ACAATTTAGAAGAAAAACGTGTTTGTT 57.801 25.926 13.01 13.01 32.36 2.83
774 1325 2.706190 AGATGTAGGACATAGTTGGGCC 59.294 50.000 0.00 0.00 39.27 5.80
907 1914 0.250234 TCAAGTCTAGCGCAATGGCT 59.750 50.000 11.47 2.34 46.88 4.75
1080 2097 4.316823 TCCAGAGGGGCGGACAGT 62.317 66.667 0.00 0.00 36.21 3.55
1195 2212 2.279784 GAAGATGCGGAGGAGGCG 60.280 66.667 0.00 0.00 0.00 5.52
1329 2349 3.706373 ACCTTGGCGCGGATGTCT 61.706 61.111 8.83 0.00 0.00 3.41
1779 2816 0.034756 CCATGTCGGAGGTGAACACA 59.965 55.000 7.25 0.00 36.56 3.72
2035 3090 2.021931 GCACGCACGCTAATCAGC 59.978 61.111 0.00 0.00 44.90 4.26
2048 3103 1.657181 GGCAACCAGAAAACGCACG 60.657 57.895 0.00 0.00 0.00 5.34
2084 3139 1.011968 TACACGAAGCCATGCACGTC 61.012 55.000 0.00 0.00 40.22 4.34
2106 3161 2.416547 GCGAGCAGAAATCAACAGCTAA 59.583 45.455 0.00 0.00 35.36 3.09
2107 3162 2.002586 GCGAGCAGAAATCAACAGCTA 58.997 47.619 0.00 0.00 35.36 3.32
2134 3208 3.188460 CCTAATTAAGCAGCAACACACGT 59.812 43.478 0.00 0.00 0.00 4.49
2139 3213 5.070001 ACAGAACCTAATTAAGCAGCAACA 58.930 37.500 0.00 0.00 0.00 3.33
2140 3214 5.629079 ACAGAACCTAATTAAGCAGCAAC 57.371 39.130 0.00 0.00 0.00 4.17
2142 3216 5.874810 CACTACAGAACCTAATTAAGCAGCA 59.125 40.000 0.00 0.00 0.00 4.41
2143 3217 5.875359 ACACTACAGAACCTAATTAAGCAGC 59.125 40.000 0.00 0.00 0.00 5.25
2144 3218 6.874134 ACACACTACAGAACCTAATTAAGCAG 59.126 38.462 0.00 0.00 0.00 4.24
2145 3219 6.765403 ACACACTACAGAACCTAATTAAGCA 58.235 36.000 0.00 0.00 0.00 3.91
2146 3220 8.767478 TTACACACTACAGAACCTAATTAAGC 57.233 34.615 0.00 0.00 0.00 3.09
2154 3228 7.670559 AGTCTCTTATTACACACTACAGAACCT 59.329 37.037 0.00 0.00 0.00 3.50
2157 3231 9.074576 TGAAGTCTCTTATTACACACTACAGAA 57.925 33.333 0.00 0.00 0.00 3.02
2243 3329 3.819902 GGTTACAAAAATCGGTACCCACA 59.180 43.478 6.25 0.00 0.00 4.17
2245 3331 4.202440 TGAGGTTACAAAAATCGGTACCCA 60.202 41.667 6.25 0.00 0.00 4.51
2276 3371 7.201785 GGTTTGAAACTAGTTTGAATCTGGTCA 60.202 37.037 25.17 10.75 32.11 4.02
2351 3450 5.759506 TCAGCAACTGTTTCGGATTTTTA 57.240 34.783 0.00 0.00 32.61 1.52
2356 3455 2.783135 ACATCAGCAACTGTTTCGGAT 58.217 42.857 0.64 0.64 32.61 4.18
2375 3474 4.092968 AGACCTCGTCAAAATATGCGAAAC 59.907 41.667 0.00 0.00 37.21 2.78
2379 3478 5.712217 TTTAGACCTCGTCAAAATATGCG 57.288 39.130 0.00 0.00 34.60 4.73
2388 3487 4.950205 AGGAAACTTTTAGACCTCGTCA 57.050 40.909 0.00 0.00 37.44 4.35
2413 3513 7.505585 TCTTGTCAGAAGGGTTTACAATTTCAT 59.494 33.333 0.00 0.00 30.33 2.57
2429 3529 4.437524 CGAGAGAGCGTAATCTTGTCAGAA 60.438 45.833 0.00 0.00 30.76 3.02
2430 3530 3.064134 CGAGAGAGCGTAATCTTGTCAGA 59.936 47.826 0.00 0.00 0.00 3.27
2431 3531 3.064134 TCGAGAGAGCGTAATCTTGTCAG 59.936 47.826 0.00 0.00 34.84 3.51
2451 3551 6.406093 ACGTATCTATCTAAGAACCGATCG 57.594 41.667 8.51 8.51 37.89 3.69
2452 3552 8.477984 AGTACGTATCTATCTAAGAACCGATC 57.522 38.462 0.00 0.00 37.89 3.69
2453 3553 9.585099 CTAGTACGTATCTATCTAAGAACCGAT 57.415 37.037 0.00 0.00 37.89 4.18
2454 3554 8.580720 ACTAGTACGTATCTATCTAAGAACCGA 58.419 37.037 0.00 0.00 37.89 4.69
2455 3555 8.646356 CACTAGTACGTATCTATCTAAGAACCG 58.354 40.741 0.00 0.00 37.89 4.44
2488 3588 7.732996 AGTTTAGTCTAAGTGCACTTTCCTAA 58.267 34.615 35.20 29.15 37.40 2.69
2491 3591 6.862711 AAGTTTAGTCTAAGTGCACTTTCC 57.137 37.500 35.20 22.30 37.40 3.13
2492 3592 8.590719 AGTAAGTTTAGTCTAAGTGCACTTTC 57.409 34.615 35.20 24.05 37.40 2.62
2558 3658 9.260002 CCAAAATGCTTTACACTAAAGAAACAT 57.740 29.630 6.02 0.00 46.19 2.71
2559 3659 8.254508 ACCAAAATGCTTTACACTAAAGAAACA 58.745 29.630 6.02 0.00 46.19 2.83
2560 3660 8.539674 CACCAAAATGCTTTACACTAAAGAAAC 58.460 33.333 6.02 0.00 46.19 2.78
2561 3661 8.470805 TCACCAAAATGCTTTACACTAAAGAAA 58.529 29.630 6.02 0.00 46.19 2.52
2570 3670 2.294791 CCGGTCACCAAAATGCTTTACA 59.705 45.455 0.00 0.00 0.00 2.41
2573 3673 0.033366 GCCGGTCACCAAAATGCTTT 59.967 50.000 1.90 0.00 0.00 3.51
2578 3678 0.179004 TCTGTGCCGGTCACCAAAAT 60.179 50.000 21.23 0.00 45.03 1.82
2616 3728 7.940850 TCAAGTTTTCTGAATAGGGAAGTTTG 58.059 34.615 0.00 0.00 0.00 2.93
2630 3742 8.725212 TTGCAATTTTGTTTTCAAGTTTTCTG 57.275 26.923 0.00 0.00 41.09 3.02
2631 3743 8.782144 TCTTGCAATTTTGTTTTCAAGTTTTCT 58.218 25.926 0.00 0.00 41.09 2.52
2632 3744 8.947304 TCTTGCAATTTTGTTTTCAAGTTTTC 57.053 26.923 0.00 0.00 41.09 2.29
2637 3749 9.985318 TTGTATTCTTGCAATTTTGTTTTCAAG 57.015 25.926 0.00 0.00 41.09 3.02
2638 3750 9.985318 CTTGTATTCTTGCAATTTTGTTTTCAA 57.015 25.926 0.00 0.00 38.10 2.69
2640 3752 8.825745 TCCTTGTATTCTTGCAATTTTGTTTTC 58.174 29.630 0.00 0.00 0.00 2.29
2641 3753 8.729805 TCCTTGTATTCTTGCAATTTTGTTTT 57.270 26.923 0.00 0.00 0.00 2.43
2642 3754 8.776470 CATCCTTGTATTCTTGCAATTTTGTTT 58.224 29.630 0.00 0.00 0.00 2.83
2645 3757 8.537049 TTCATCCTTGTATTCTTGCAATTTTG 57.463 30.769 0.00 0.00 0.00 2.44
2694 3808 9.438291 GGTCGTATTTCAATGTATTTCATTCTG 57.562 33.333 0.00 0.00 43.93 3.02
2695 3809 9.396022 AGGTCGTATTTCAATGTATTTCATTCT 57.604 29.630 0.00 0.00 43.93 2.40
2696 3810 9.438291 CAGGTCGTATTTCAATGTATTTCATTC 57.562 33.333 0.00 0.00 43.93 2.67
2697 3811 8.956426 ACAGGTCGTATTTCAATGTATTTCATT 58.044 29.630 0.00 0.00 46.32 2.57
2698 3812 8.506168 ACAGGTCGTATTTCAATGTATTTCAT 57.494 30.769 0.00 0.00 38.57 2.57
2699 3813 7.915293 ACAGGTCGTATTTCAATGTATTTCA 57.085 32.000 0.00 0.00 0.00 2.69
2700 3814 8.875803 TGTACAGGTCGTATTTCAATGTATTTC 58.124 33.333 0.00 0.00 31.20 2.17
2706 3820 9.485591 GTATTTTGTACAGGTCGTATTTCAATG 57.514 33.333 0.00 0.00 31.20 2.82
2707 3821 9.221933 TGTATTTTGTACAGGTCGTATTTCAAT 57.778 29.630 0.00 0.00 31.20 2.57
2743 3857 9.703892 GCATGATACTATTCATACTCAAAGTCT 57.296 33.333 0.00 0.00 34.59 3.24
2793 3907 4.444056 CGTAAAAATGAGGGTTGTGCAAAG 59.556 41.667 0.00 0.00 0.00 2.77
2845 3959 7.920682 TGTAGATATACATAGCGGCATAATGTG 59.079 37.037 19.46 4.53 35.54 3.21
2846 3960 8.007405 TGTAGATATACATAGCGGCATAATGT 57.993 34.615 16.31 16.31 37.58 2.71
2856 3970 9.944376 TTCTGGGAAAATGTAGATATACATAGC 57.056 33.333 13.17 6.12 39.54 2.97
2904 4018 9.666626 TGCAATTTTCAACATTCATCAAAATTC 57.333 25.926 0.00 0.00 35.47 2.17
2918 4032 4.516321 AGGCCTTCATTTGCAATTTTCAAC 59.484 37.500 0.00 0.00 0.00 3.18
2957 4071 0.833949 AAGGCCTTTTCCCGCAAAAA 59.166 45.000 13.78 0.00 33.40 1.94
2958 4072 0.833949 AAAGGCCTTTTCCCGCAAAA 59.166 45.000 25.47 0.00 32.77 2.44
2959 4073 1.705873 TAAAGGCCTTTTCCCGCAAA 58.294 45.000 34.60 12.46 34.23 3.68
2960 4074 1.548269 CATAAAGGCCTTTTCCCGCAA 59.452 47.619 34.60 16.19 34.23 4.85
2961 4075 1.181786 CATAAAGGCCTTTTCCCGCA 58.818 50.000 34.60 16.95 34.23 5.69
2962 4076 1.182667 ACATAAAGGCCTTTTCCCGC 58.817 50.000 34.60 0.00 34.23 6.13
2963 4077 2.357952 GCTACATAAAGGCCTTTTCCCG 59.642 50.000 34.60 21.51 34.23 5.14
2964 4078 3.632333 AGCTACATAAAGGCCTTTTCCC 58.368 45.455 34.60 16.92 34.23 3.97
2965 4079 3.312697 CGAGCTACATAAAGGCCTTTTCC 59.687 47.826 34.60 16.28 34.23 3.13
2966 4080 3.312697 CCGAGCTACATAAAGGCCTTTTC 59.687 47.826 34.60 22.08 34.23 2.29
2967 4081 3.279434 CCGAGCTACATAAAGGCCTTTT 58.721 45.455 34.60 19.99 34.23 2.27
2968 4082 2.919228 CCGAGCTACATAAAGGCCTTT 58.081 47.619 32.37 32.37 36.63 3.11
2969 4083 1.475213 GCCGAGCTACATAAAGGCCTT 60.475 52.381 13.78 13.78 38.72 4.35
2970 4084 0.106894 GCCGAGCTACATAAAGGCCT 59.893 55.000 0.00 0.00 38.72 5.19
2971 4085 2.618165 GCCGAGCTACATAAAGGCC 58.382 57.895 0.00 0.00 38.72 5.19
2972 4086 0.106894 AGGCCGAGCTACATAAAGGC 59.893 55.000 0.00 0.00 43.47 4.35
2973 4087 1.270358 GGAGGCCGAGCTACATAAAGG 60.270 57.143 0.00 0.00 0.00 3.11
2974 4088 1.412710 TGGAGGCCGAGCTACATAAAG 59.587 52.381 0.00 0.00 0.00 1.85
2975 4089 1.491668 TGGAGGCCGAGCTACATAAA 58.508 50.000 0.00 0.00 0.00 1.40
2976 4090 1.491668 TTGGAGGCCGAGCTACATAA 58.508 50.000 0.00 0.00 0.00 1.90
2977 4091 1.491668 TTTGGAGGCCGAGCTACATA 58.508 50.000 0.00 0.00 0.00 2.29
2978 4092 0.618458 TTTTGGAGGCCGAGCTACAT 59.382 50.000 0.00 0.00 0.00 2.29
2979 4093 0.036388 CTTTTGGAGGCCGAGCTACA 60.036 55.000 0.00 0.00 0.00 2.74
2980 4094 1.369839 GCTTTTGGAGGCCGAGCTAC 61.370 60.000 0.00 0.00 0.00 3.58
2981 4095 1.078426 GCTTTTGGAGGCCGAGCTA 60.078 57.895 0.00 0.00 0.00 3.32
2982 4096 2.360475 GCTTTTGGAGGCCGAGCT 60.360 61.111 0.00 0.00 0.00 4.09
2983 4097 1.598701 ATTGCTTTTGGAGGCCGAGC 61.599 55.000 0.00 2.19 0.00 5.03
2984 4098 0.890683 AATTGCTTTTGGAGGCCGAG 59.109 50.000 0.00 0.00 0.00 4.63
2985 4099 1.337118 AAATTGCTTTTGGAGGCCGA 58.663 45.000 0.00 0.00 0.00 5.54
2986 4100 2.168326 AAAATTGCTTTTGGAGGCCG 57.832 45.000 0.00 0.00 33.33 6.13
2987 4101 3.902261 CAAAAATTGCTTTTGGAGGCC 57.098 42.857 0.00 0.00 46.88 5.19
2994 4108 8.901793 TGGCTAAAGAAATCAAAAATTGCTTTT 58.098 25.926 8.60 0.00 37.83 2.27
2995 4109 8.449251 TGGCTAAAGAAATCAAAAATTGCTTT 57.551 26.923 8.41 8.41 39.49 3.51
2996 4110 8.625786 ATGGCTAAAGAAATCAAAAATTGCTT 57.374 26.923 0.00 0.00 0.00 3.91
2997 4111 9.723601 TTATGGCTAAAGAAATCAAAAATTGCT 57.276 25.926 0.00 0.00 0.00 3.91


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.