Multiple sequence alignment - TraesCS2B01G615300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G615300 chr2B 100.000 6976 0 0 1 6976 793381384 793374409 0.000000e+00 12883.0
1 TraesCS2B01G615300 chr2B 83.413 1471 224 10 4518 5978 793354459 793352999 0.000000e+00 1347.0
2 TraesCS2B01G615300 chr2B 96.322 571 19 2 6099 6669 691398825 691399393 0.000000e+00 937.0
3 TraesCS2B01G615300 chr2B 93.333 240 16 0 1242 1481 793367806 793367567 8.610000e-94 355.0
4 TraesCS2B01G615300 chr2B 84.923 325 40 4 894 1212 793368132 793367811 3.140000e-83 320.0
5 TraesCS2B01G615300 chr2B 81.535 417 51 17 1061 1474 793406021 793405628 3.140000e-83 320.0
6 TraesCS2B01G615300 chr2B 88.546 227 26 0 1247 1473 793426862 793426636 6.890000e-70 276.0
7 TraesCS2B01G615300 chr2B 80.734 327 57 5 4763 5086 793397739 793397416 4.180000e-62 250.0
8 TraesCS2B01G615300 chr2B 86.344 227 29 2 1246 1471 798745825 798745600 5.400000e-61 246.0
9 TraesCS2B01G615300 chr2B 85.714 161 18 5 6820 6976 691399418 691399577 1.560000e-36 165.0
10 TraesCS2B01G615300 chr2B 78.000 150 24 7 1010 1153 798578410 798578556 1.250000e-12 86.1
11 TraesCS2B01G615300 chr2B 77.181 149 25 8 1010 1152 798571846 798571991 2.090000e-10 78.7
12 TraesCS2B01G615300 chr2D 92.981 2707 145 24 3405 6086 643742854 643745540 0.000000e+00 3904.0
13 TraesCS2B01G615300 chr2D 88.807 1492 114 23 1796 3267 643738394 643739852 0.000000e+00 1781.0
14 TraesCS2B01G615300 chr2D 85.364 1387 197 6 4595 5978 643768299 643769682 0.000000e+00 1432.0
15 TraesCS2B01G615300 chr2D 93.506 847 42 6 891 1731 643737391 643738230 0.000000e+00 1247.0
16 TraesCS2B01G615300 chr2D 92.063 567 36 4 1 559 643735582 643736147 0.000000e+00 789.0
17 TraesCS2B01G615300 chr2D 86.406 537 54 15 945 1471 643761693 643762220 2.820000e-158 569.0
18 TraesCS2B01G615300 chr2D 74.399 1164 260 29 4771 5927 643660593 643659461 1.370000e-126 464.0
19 TraesCS2B01G615300 chr2D 90.171 234 16 4 1246 1474 643662186 643661955 1.470000e-76 298.0
20 TraesCS2B01G615300 chr2D 78.497 479 75 18 1004 1478 643674773 643675227 8.850000e-74 289.0
21 TraesCS2B01G615300 chr2D 79.439 428 58 22 1049 1474 643727135 643727534 6.890000e-70 276.0
22 TraesCS2B01G615300 chr2D 88.546 227 24 2 1246 1471 639680205 639679980 2.480000e-69 274.0
23 TraesCS2B01G615300 chr2D 91.327 196 11 3 583 778 643736554 643736743 5.370000e-66 263.0
24 TraesCS2B01G615300 chr2D 91.558 154 13 0 3261 3414 643740976 643741129 5.480000e-51 213.0
25 TraesCS2B01G615300 chr2A 92.045 2577 158 25 3544 6097 768573185 768575737 0.000000e+00 3579.0
26 TraesCS2B01G615300 chr2A 93.066 923 49 8 867 1783 768571126 768572039 0.000000e+00 1336.0
27 TraesCS2B01G615300 chr2A 89.872 701 58 7 2187 2879 768572491 768573186 0.000000e+00 889.0
28 TraesCS2B01G615300 chr2A 93.972 564 27 5 1 559 768563680 768564241 0.000000e+00 846.0
29 TraesCS2B01G615300 chr2A 85.695 727 95 8 5254 5978 768620106 768620825 0.000000e+00 758.0
30 TraesCS2B01G615300 chr2A 83.624 574 91 3 4636 5208 768608951 768609522 2.860000e-148 536.0
31 TraesCS2B01G615300 chr2A 92.537 201 11 1 1860 2056 768572193 768572393 1.150000e-72 285.0
32 TraesCS2B01G615300 chr2A 91.748 206 13 3 583 787 768564646 768564848 4.120000e-72 283.0
33 TraesCS2B01G615300 chr2A 79.157 427 64 14 1049 1474 768552821 768553223 8.920000e-69 272.0
34 TraesCS2B01G615300 chr2A 77.641 407 82 7 4686 5086 768556848 768557251 9.040000e-59 239.0
35 TraesCS2B01G615300 chr2A 91.176 68 5 1 1796 1862 768572023 768572090 2.680000e-14 91.6
36 TraesCS2B01G615300 chr7A 96.176 706 22 3 6102 6802 201545689 201544984 0.000000e+00 1149.0
37 TraesCS2B01G615300 chr7A 95.411 414 18 1 6102 6514 518510273 518509860 0.000000e+00 658.0
38 TraesCS2B01G615300 chr7A 96.203 158 3 2 6820 6976 201544999 201544844 8.980000e-64 255.0
39 TraesCS2B01G615300 chr3B 94.009 701 12 2 6102 6802 224962953 224962283 0.000000e+00 1035.0
40 TraesCS2B01G615300 chr3B 95.541 157 4 2 6820 6976 224962298 224962145 1.500000e-61 248.0
41 TraesCS2B01G615300 chr6A 94.408 608 30 3 6102 6705 20017599 20016992 0.000000e+00 931.0
42 TraesCS2B01G615300 chr6A 93.671 158 7 2 6820 6976 20008000 20007845 4.210000e-57 233.0
43 TraesCS2B01G615300 chr6A 95.146 103 5 0 6700 6802 20008087 20007985 5.600000e-36 163.0
44 TraesCS2B01G615300 chr6B 88.252 715 81 3 6089 6802 583880588 583879876 0.000000e+00 852.0
45 TraesCS2B01G615300 chr1A 87.801 705 78 6 6102 6802 154007260 154006560 0.000000e+00 819.0
46 TraesCS2B01G615300 chr1A 92.308 39 3 0 5872 5910 373768382 373768420 1.000000e-03 56.5
47 TraesCS2B01G615300 chr3D 94.976 418 19 2 6102 6519 52433460 52433045 0.000000e+00 654.0
48 TraesCS2B01G615300 chr3D 96.341 246 9 0 6556 6801 52433048 52432803 8.430000e-109 405.0
49 TraesCS2B01G615300 chr1D 90.956 387 35 0 6102 6488 42021237 42020851 8.020000e-144 521.0
50 TraesCS2B01G615300 chr1D 91.111 315 27 1 6486 6800 42020621 42020308 6.470000e-115 425.0
51 TraesCS2B01G615300 chr1D 76.761 426 72 16 142 558 387805035 387805442 5.480000e-51 213.0
52 TraesCS2B01G615300 chr1D 80.420 286 30 6 1 260 400397925 400398210 1.990000e-45 195.0
53 TraesCS2B01G615300 chr1D 92.105 38 3 0 5872 5909 299578208 299578245 4.000000e-03 54.7
54 TraesCS2B01G615300 chr1D 92.105 38 3 0 5872 5909 299581745 299581708 4.000000e-03 54.7
55 TraesCS2B01G615300 chr7B 81.560 423 59 10 142 558 381386344 381385935 1.450000e-86 331.0
56 TraesCS2B01G615300 chr4D 80.851 423 59 11 142 558 359889655 359889249 5.250000e-81 313.0
57 TraesCS2B01G615300 chr4A 90.638 235 17 4 6408 6637 661533512 661533278 2.440000e-79 307.0
58 TraesCS2B01G615300 chr4A 86.667 165 9 6 6820 6976 661533068 661532909 3.350000e-38 171.0
59 TraesCS2B01G615300 chr7D 79.621 422 69 8 142 558 520556323 520555914 3.180000e-73 287.0
60 TraesCS2B01G615300 chr7D 80.567 247 34 9 6595 6840 575922874 575923107 2.000000e-40 178.0
61 TraesCS2B01G615300 chrUn 78.673 422 70 10 142 558 298781325 298781731 5.370000e-66 263.0
62 TraesCS2B01G615300 chr5B 82.710 214 29 7 6595 6807 681176062 681175856 4.300000e-42 183.0
63 TraesCS2B01G615300 chr1B 79.021 286 34 5 1 260 537477534 537477819 9.300000e-39 172.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G615300 chr2B 793374409 793381384 6975 True 12883.000000 12883 100.0000 1 6976 1 chr2B.!!$R2 6975
1 TraesCS2B01G615300 chr2B 793352999 793354459 1460 True 1347.000000 1347 83.4130 4518 5978 1 chr2B.!!$R1 1460
2 TraesCS2B01G615300 chr2B 691398825 691399577 752 False 551.000000 937 91.0180 6099 6976 2 chr2B.!!$F3 877
3 TraesCS2B01G615300 chr2B 793367567 793368132 565 True 337.500000 355 89.1280 894 1481 2 chr2B.!!$R7 587
4 TraesCS2B01G615300 chr2D 643768299 643769682 1383 False 1432.000000 1432 85.3640 4595 5978 1 chr2D.!!$F4 1383
5 TraesCS2B01G615300 chr2D 643735582 643745540 9958 False 1366.166667 3904 91.7070 1 6086 6 chr2D.!!$F5 6085
6 TraesCS2B01G615300 chr2D 643761693 643762220 527 False 569.000000 569 86.4060 945 1471 1 chr2D.!!$F3 526
7 TraesCS2B01G615300 chr2D 643659461 643662186 2725 True 381.000000 464 82.2850 1246 5927 2 chr2D.!!$R2 4681
8 TraesCS2B01G615300 chr2A 768571126 768575737 4611 False 1236.120000 3579 91.7392 867 6097 5 chr2A.!!$F5 5230
9 TraesCS2B01G615300 chr2A 768620106 768620825 719 False 758.000000 758 85.6950 5254 5978 1 chr2A.!!$F2 724
10 TraesCS2B01G615300 chr2A 768563680 768564848 1168 False 564.500000 846 92.8600 1 787 2 chr2A.!!$F4 786
11 TraesCS2B01G615300 chr2A 768608951 768609522 571 False 536.000000 536 83.6240 4636 5208 1 chr2A.!!$F1 572
12 TraesCS2B01G615300 chr2A 768552821 768557251 4430 False 255.500000 272 78.3990 1049 5086 2 chr2A.!!$F3 4037
13 TraesCS2B01G615300 chr7A 201544844 201545689 845 True 702.000000 1149 96.1895 6102 6976 2 chr7A.!!$R2 874
14 TraesCS2B01G615300 chr3B 224962145 224962953 808 True 641.500000 1035 94.7750 6102 6976 2 chr3B.!!$R1 874
15 TraesCS2B01G615300 chr6A 20016992 20017599 607 True 931.000000 931 94.4080 6102 6705 1 chr6A.!!$R1 603
16 TraesCS2B01G615300 chr6B 583879876 583880588 712 True 852.000000 852 88.2520 6089 6802 1 chr6B.!!$R1 713
17 TraesCS2B01G615300 chr1A 154006560 154007260 700 True 819.000000 819 87.8010 6102 6802 1 chr1A.!!$R1 700
18 TraesCS2B01G615300 chr3D 52432803 52433460 657 True 529.500000 654 95.6585 6102 6801 2 chr3D.!!$R1 699
19 TraesCS2B01G615300 chr1D 42020308 42021237 929 True 473.000000 521 91.0335 6102 6800 2 chr1D.!!$R2 698
20 TraesCS2B01G615300 chr4A 661532909 661533512 603 True 239.000000 307 88.6525 6408 6976 2 chr4A.!!$R1 568

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
309 310 0.530744 AGATGCTCGGCGACAACTTA 59.469 50.000 4.99 0.00 0.00 2.24 F
343 346 1.467543 GCGCGGGAGAGAAATTTTTCC 60.468 52.381 8.83 6.88 37.92 3.13 F
2150 6640 0.118346 AGGGTGGTGATGTGGGTAGA 59.882 55.000 0.00 0.00 0.00 2.59 F
2496 7092 0.032813 AAGTGGAGGGGGCATTGATG 60.033 55.000 0.00 0.00 0.00 3.07 F
3274 9014 0.037975 CCTGTCATTGTTGCCCTTGC 60.038 55.000 0.00 0.00 38.26 4.01 F
3516 10989 0.321653 GGAGGTTGTCATGAAGGCGT 60.322 55.000 0.00 0.00 0.00 5.68 F
3751 11226 0.322546 AAAGGGCCATCAAGGTCGAC 60.323 55.000 7.13 7.13 45.54 4.20 F
5095 12763 0.390492 CGCCTCTATGATGCCACTCA 59.610 55.000 0.00 0.00 0.00 3.41 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2131 6621 0.118346 TCTACCCACATCACCACCCT 59.882 55.000 0.00 0.0 0.00 4.34 R
2153 6643 0.323542 CGCCCCGGATATCTACTCCT 60.324 60.000 0.73 0.0 0.00 3.69 R
3954 11429 0.107831 TTCAGGTTTGTGAGGTCCCG 59.892 55.000 0.00 0.0 0.00 5.14 R
4364 11841 0.036010 CAGGCTCATCGAACCCACTT 60.036 55.000 0.00 0.0 0.00 3.16 R
4812 12480 0.390124 CCCTGCGCAATGGCAATTAT 59.610 50.000 13.05 0.0 43.39 1.28 R
5250 12918 1.268794 CCAAATCGACAACAACCGCAA 60.269 47.619 0.00 0.0 0.00 4.85 R
5592 13260 1.455217 CCTCCGGGTCGTCCACTAT 60.455 63.158 0.00 0.0 34.36 2.12 R
6809 14790 0.035152 ATCCGTTGCCAGATGCTCAA 60.035 50.000 0.00 0.0 42.00 3.02 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
83 84 7.049754 GGATTATGTCAAATGGGAAGCATTTT 58.950 34.615 0.00 0.00 30.66 1.82
93 94 4.473444 TGGGAAGCATTTTGATAGGGATC 58.527 43.478 0.00 0.00 0.00 3.36
110 111 4.282195 AGGGATCGGCTTGTCTATTCTAAG 59.718 45.833 0.00 0.00 0.00 2.18
268 269 0.740868 GAGCTGCGTACCAGATTGCA 60.741 55.000 13.57 3.59 41.00 4.08
309 310 0.530744 AGATGCTCGGCGACAACTTA 59.469 50.000 4.99 0.00 0.00 2.24
317 318 2.290916 TCGGCGACAACTTAAAAATGCA 59.709 40.909 4.99 0.00 0.00 3.96
336 337 1.827399 AAAGGAGCGCGGGAGAGAAA 61.827 55.000 8.83 0.00 0.00 2.52
343 346 1.467543 GCGCGGGAGAGAAATTTTTCC 60.468 52.381 8.83 6.88 37.92 3.13
360 363 6.662865 TTTTTCCTAGAATTGGTGCATTGA 57.337 33.333 0.00 0.00 0.00 2.57
413 420 8.739972 ACTTTCATGCTATTAACAGTAAAAGGG 58.260 33.333 2.47 0.00 0.00 3.95
449 456 3.355378 TGCATATCTCTTGGGTTTGGTG 58.645 45.455 0.00 0.00 0.00 4.17
464 472 3.451141 TTGGTGGAGATGTTTTTGCAC 57.549 42.857 0.00 0.00 35.24 4.57
828 1789 3.940221 GTGTTGTACAGTACCAACCAACA 59.060 43.478 8.30 8.60 39.65 3.33
829 1790 4.395542 GTGTTGTACAGTACCAACCAACAA 59.604 41.667 15.86 5.46 42.41 2.83
834 1795 3.871485 ACAGTACCAACCAACAAACGTA 58.129 40.909 0.00 0.00 0.00 3.57
845 1806 3.913763 CCAACAAACGTACAAGCATCATG 59.086 43.478 0.00 0.00 0.00 3.07
846 1807 3.201726 ACAAACGTACAAGCATCATGC 57.798 42.857 0.00 0.00 45.46 4.06
863 1824 8.336498 GCATCATGCATCATGTATTAATTAGC 57.664 34.615 12.46 0.00 44.26 3.09
864 1825 8.188799 GCATCATGCATCATGTATTAATTAGCT 58.811 33.333 12.46 0.00 44.26 3.32
865 1826 9.717892 CATCATGCATCATGTATTAATTAGCTC 57.282 33.333 1.80 0.00 41.98 4.09
875 1836 6.064060 TGTATTAATTAGCTCAGCTGGCAAT 58.936 36.000 23.46 17.90 40.10 3.56
878 1839 2.495155 TTAGCTCAGCTGGCAATGAA 57.505 45.000 23.46 12.19 40.10 2.57
914 1876 3.632145 ACTGGCAAAGATTTTTGTCTCGT 59.368 39.130 13.73 8.44 46.54 4.18
923 1885 4.273480 AGATTTTTGTCTCGTGTTGACAGG 59.727 41.667 0.00 0.00 43.98 4.00
984 1951 5.008811 GCTTAATTAGCTCCGAGAGAGTACA 59.991 44.000 0.00 0.00 46.77 2.90
985 1952 6.621316 TTAATTAGCTCCGAGAGAGTACAG 57.379 41.667 0.00 0.00 45.21 2.74
986 1953 1.956297 TAGCTCCGAGAGAGTACAGC 58.044 55.000 0.00 0.00 45.21 4.40
1037 2004 2.034048 GCCGAGGCTCCCTTCCTTAG 62.034 65.000 9.32 0.00 38.26 2.18
1179 2152 2.172082 TGACCGTCCTAGCTAGCTAAGA 59.828 50.000 24.20 20.74 0.00 2.10
1215 2196 6.509199 CGACAACTCATCAATCTGCTATCAAC 60.509 42.308 0.00 0.00 0.00 3.18
1510 4816 9.536558 TTAATTCTTTCGATACATTTCAACGTG 57.463 29.630 0.00 0.00 0.00 4.49
1850 6162 6.108015 CCATATTTTTGTTGGGGAATGACTG 58.892 40.000 0.00 0.00 0.00 3.51
1908 6325 4.693566 CACTTCGTCCAGGTTTATTAAGCA 59.306 41.667 0.00 0.00 34.21 3.91
1921 6342 8.110908 AGGTTTATTAAGCACCCATTTAGTGTA 58.889 33.333 0.00 0.00 37.56 2.90
2084 6574 3.303938 TGGCTGAAAATGTTGGAAGGAA 58.696 40.909 0.00 0.00 0.00 3.36
2085 6575 3.321682 TGGCTGAAAATGTTGGAAGGAAG 59.678 43.478 0.00 0.00 0.00 3.46
2086 6576 3.573967 GGCTGAAAATGTTGGAAGGAAGA 59.426 43.478 0.00 0.00 0.00 2.87
2087 6577 4.221482 GGCTGAAAATGTTGGAAGGAAGAT 59.779 41.667 0.00 0.00 0.00 2.40
2088 6578 5.405797 GCTGAAAATGTTGGAAGGAAGATC 58.594 41.667 0.00 0.00 0.00 2.75
2089 6579 5.623141 GCTGAAAATGTTGGAAGGAAGATCC 60.623 44.000 0.00 0.00 36.58 3.36
2090 6580 5.392995 TGAAAATGTTGGAAGGAAGATCCA 58.607 37.500 0.00 0.00 45.09 3.41
2091 6581 6.018469 TGAAAATGTTGGAAGGAAGATCCAT 58.982 36.000 0.00 0.00 45.99 3.41
2092 6582 7.181361 TGAAAATGTTGGAAGGAAGATCCATA 58.819 34.615 0.00 0.00 45.99 2.74
2093 6583 7.340232 TGAAAATGTTGGAAGGAAGATCCATAG 59.660 37.037 0.00 0.00 45.99 2.23
2094 6584 4.778213 TGTTGGAAGGAAGATCCATAGG 57.222 45.455 0.00 0.00 45.99 2.57
2095 6585 4.111577 TGTTGGAAGGAAGATCCATAGGT 58.888 43.478 0.00 0.00 45.99 3.08
2096 6586 4.540099 TGTTGGAAGGAAGATCCATAGGTT 59.460 41.667 0.00 0.00 45.99 3.50
2097 6587 4.778213 TGGAAGGAAGATCCATAGGTTG 57.222 45.455 0.00 0.00 41.98 3.77
2098 6588 4.079787 TTGGAAGGAAGATCCATAGGTTGG 60.080 45.833 0.00 0.00 45.99 3.77
2109 6599 3.576078 CATAGGTTGGACAATAGCCCA 57.424 47.619 0.00 0.00 0.00 5.36
2110 6600 4.104383 CATAGGTTGGACAATAGCCCAT 57.896 45.455 0.00 0.00 31.66 4.00
2111 6601 4.473444 CATAGGTTGGACAATAGCCCATT 58.527 43.478 0.00 0.00 31.66 3.16
2112 6602 3.473113 AGGTTGGACAATAGCCCATTT 57.527 42.857 0.00 0.00 31.66 2.32
2113 6603 3.790126 AGGTTGGACAATAGCCCATTTT 58.210 40.909 0.00 0.00 31.66 1.82
2114 6604 3.515104 AGGTTGGACAATAGCCCATTTTG 59.485 43.478 0.00 0.00 31.66 2.44
2115 6605 3.261580 GTTGGACAATAGCCCATTTTGC 58.738 45.455 0.00 0.00 31.66 3.68
2116 6606 2.818921 TGGACAATAGCCCATTTTGCT 58.181 42.857 0.00 0.00 42.81 3.91
2117 6607 3.172339 TGGACAATAGCCCATTTTGCTT 58.828 40.909 0.00 0.00 40.23 3.91
2118 6608 3.055963 TGGACAATAGCCCATTTTGCTTG 60.056 43.478 0.00 0.00 40.23 4.01
2119 6609 3.195396 GGACAATAGCCCATTTTGCTTGA 59.805 43.478 0.00 0.00 40.23 3.02
2120 6610 4.427312 GACAATAGCCCATTTTGCTTGAG 58.573 43.478 0.00 0.00 40.23 3.02
2121 6611 3.192466 CAATAGCCCATTTTGCTTGAGC 58.808 45.455 0.00 0.00 40.23 4.26
2122 6612 2.220653 TAGCCCATTTTGCTTGAGCT 57.779 45.000 4.44 0.00 42.66 4.09
2123 6613 2.220653 AGCCCATTTTGCTTGAGCTA 57.779 45.000 4.44 0.00 42.66 3.32
2124 6614 2.743553 AGCCCATTTTGCTTGAGCTAT 58.256 42.857 4.44 0.00 42.66 2.97
2125 6615 2.692041 AGCCCATTTTGCTTGAGCTATC 59.308 45.455 4.44 0.00 42.66 2.08
2126 6616 2.428171 GCCCATTTTGCTTGAGCTATCA 59.572 45.455 4.44 0.00 42.66 2.15
2127 6617 3.490419 GCCCATTTTGCTTGAGCTATCAG 60.490 47.826 4.44 0.00 42.66 2.90
2128 6618 3.949754 CCCATTTTGCTTGAGCTATCAGA 59.050 43.478 4.44 0.00 42.66 3.27
2129 6619 4.201990 CCCATTTTGCTTGAGCTATCAGAC 60.202 45.833 4.44 0.00 42.66 3.51
2130 6620 4.639310 CCATTTTGCTTGAGCTATCAGACT 59.361 41.667 4.44 0.00 42.66 3.24
2131 6621 5.819379 CCATTTTGCTTGAGCTATCAGACTA 59.181 40.000 4.44 0.00 42.66 2.59
2132 6622 6.018098 CCATTTTGCTTGAGCTATCAGACTAG 60.018 42.308 4.44 0.00 42.66 2.57
2133 6623 4.662468 TTGCTTGAGCTATCAGACTAGG 57.338 45.455 4.44 0.00 42.66 3.02
2134 6624 2.961741 TGCTTGAGCTATCAGACTAGGG 59.038 50.000 4.44 0.00 42.66 3.53
2135 6625 2.962421 GCTTGAGCTATCAGACTAGGGT 59.038 50.000 0.00 0.00 36.61 4.34
2136 6626 3.243704 GCTTGAGCTATCAGACTAGGGTG 60.244 52.174 0.00 0.00 36.61 4.61
2137 6627 2.950781 TGAGCTATCAGACTAGGGTGG 58.049 52.381 0.00 0.00 0.00 4.61
2138 6628 2.245028 TGAGCTATCAGACTAGGGTGGT 59.755 50.000 0.00 0.00 0.00 4.16
2139 6629 2.625790 GAGCTATCAGACTAGGGTGGTG 59.374 54.545 0.00 0.00 0.00 4.17
2140 6630 2.245028 AGCTATCAGACTAGGGTGGTGA 59.755 50.000 0.00 0.00 0.00 4.02
2141 6631 3.116939 AGCTATCAGACTAGGGTGGTGAT 60.117 47.826 0.00 0.00 33.16 3.06
2142 6632 3.006323 GCTATCAGACTAGGGTGGTGATG 59.994 52.174 0.00 0.00 31.81 3.07
2143 6633 2.623418 TCAGACTAGGGTGGTGATGT 57.377 50.000 0.00 0.00 0.00 3.06
2144 6634 2.179427 TCAGACTAGGGTGGTGATGTG 58.821 52.381 0.00 0.00 0.00 3.21
2145 6635 1.208052 CAGACTAGGGTGGTGATGTGG 59.792 57.143 0.00 0.00 0.00 4.17
2146 6636 0.541863 GACTAGGGTGGTGATGTGGG 59.458 60.000 0.00 0.00 0.00 4.61
2147 6637 0.178873 ACTAGGGTGGTGATGTGGGT 60.179 55.000 0.00 0.00 0.00 4.51
2148 6638 1.079825 ACTAGGGTGGTGATGTGGGTA 59.920 52.381 0.00 0.00 0.00 3.69
2149 6639 1.762957 CTAGGGTGGTGATGTGGGTAG 59.237 57.143 0.00 0.00 0.00 3.18
2150 6640 0.118346 AGGGTGGTGATGTGGGTAGA 59.882 55.000 0.00 0.00 0.00 2.59
2151 6641 0.541863 GGGTGGTGATGTGGGTAGAG 59.458 60.000 0.00 0.00 0.00 2.43
2152 6642 1.276622 GGTGGTGATGTGGGTAGAGT 58.723 55.000 0.00 0.00 0.00 3.24
2153 6643 2.463752 GGTGGTGATGTGGGTAGAGTA 58.536 52.381 0.00 0.00 0.00 2.59
2154 6644 2.431057 GGTGGTGATGTGGGTAGAGTAG 59.569 54.545 0.00 0.00 0.00 2.57
2155 6645 2.431057 GTGGTGATGTGGGTAGAGTAGG 59.569 54.545 0.00 0.00 0.00 3.18
2156 6646 2.313643 TGGTGATGTGGGTAGAGTAGGA 59.686 50.000 0.00 0.00 0.00 2.94
2157 6647 2.959707 GGTGATGTGGGTAGAGTAGGAG 59.040 54.545 0.00 0.00 0.00 3.69
2158 6648 3.627747 GGTGATGTGGGTAGAGTAGGAGT 60.628 52.174 0.00 0.00 0.00 3.85
2159 6649 4.386088 GGTGATGTGGGTAGAGTAGGAGTA 60.386 50.000 0.00 0.00 0.00 2.59
2160 6650 4.822896 GTGATGTGGGTAGAGTAGGAGTAG 59.177 50.000 0.00 0.00 0.00 2.57
2161 6651 4.725304 TGATGTGGGTAGAGTAGGAGTAGA 59.275 45.833 0.00 0.00 0.00 2.59
2162 6652 5.372959 TGATGTGGGTAGAGTAGGAGTAGAT 59.627 44.000 0.00 0.00 0.00 1.98
2163 6653 6.561454 TGATGTGGGTAGAGTAGGAGTAGATA 59.439 42.308 0.00 0.00 0.00 1.98
2164 6654 7.239984 TGATGTGGGTAGAGTAGGAGTAGATAT 59.760 40.741 0.00 0.00 0.00 1.63
2165 6655 7.018487 TGTGGGTAGAGTAGGAGTAGATATC 57.982 44.000 0.00 0.00 0.00 1.63
2166 6656 6.012683 TGTGGGTAGAGTAGGAGTAGATATCC 60.013 46.154 0.00 0.00 37.07 2.59
2167 6657 5.189342 TGGGTAGAGTAGGAGTAGATATCCG 59.811 48.000 0.00 0.00 42.02 4.18
2168 6658 5.396660 GGGTAGAGTAGGAGTAGATATCCGG 60.397 52.000 0.00 0.00 42.02 5.14
2169 6659 4.847990 AGAGTAGGAGTAGATATCCGGG 57.152 50.000 0.00 0.00 42.02 5.73
2170 6660 3.524380 AGAGTAGGAGTAGATATCCGGGG 59.476 52.174 0.00 0.00 42.02 5.73
2171 6661 2.025131 AGTAGGAGTAGATATCCGGGGC 60.025 54.545 0.00 0.00 42.02 5.80
2172 6662 0.323542 AGGAGTAGATATCCGGGGCG 60.324 60.000 0.00 0.00 42.02 6.13
2173 6663 1.511768 GAGTAGATATCCGGGGCGC 59.488 63.158 0.00 0.00 0.00 6.53
2174 6664 1.946475 GAGTAGATATCCGGGGCGCC 61.946 65.000 21.18 21.18 0.00 6.53
2175 6665 2.118732 TAGATATCCGGGGCGCCA 59.881 61.111 30.85 7.96 0.00 5.69
2176 6666 1.982395 TAGATATCCGGGGCGCCAG 60.982 63.158 30.85 21.35 0.00 4.85
2177 6667 2.435120 TAGATATCCGGGGCGCCAGA 62.435 60.000 30.85 21.78 0.00 3.86
2178 6668 2.847234 ATATCCGGGGCGCCAGAA 60.847 61.111 30.85 10.89 0.00 3.02
2179 6669 2.391724 GATATCCGGGGCGCCAGAAA 62.392 60.000 30.85 11.31 0.00 2.52
2180 6670 2.397413 ATATCCGGGGCGCCAGAAAG 62.397 60.000 30.85 13.57 0.00 2.62
2184 6674 4.678743 GGGGCGCCAGAAAGGGTT 62.679 66.667 30.85 0.00 38.09 4.11
2185 6675 3.373565 GGGCGCCAGAAAGGGTTG 61.374 66.667 30.85 0.00 38.09 3.77
2265 6860 1.177401 GGAGATTTGTTGGAGGGTGC 58.823 55.000 0.00 0.00 0.00 5.01
2266 6861 1.177401 GAGATTTGTTGGAGGGTGCC 58.823 55.000 0.00 0.00 0.00 5.01
2322 6917 5.338871 GGGGTGGAGTGTTTATCATCAACTA 60.339 44.000 0.00 0.00 0.00 2.24
2338 6933 2.044650 TACGTGGGAGTAGCGGCT 60.045 61.111 7.98 7.98 0.00 5.52
2363 6958 1.123077 AGCATTGCACCTATCGGAGA 58.877 50.000 11.91 0.00 45.75 3.71
2439 7035 0.593128 AAGCACGTTGTTGATGCCTC 59.407 50.000 0.00 0.00 40.33 4.70
2489 7085 1.979155 GCTGAAAAGTGGAGGGGGC 60.979 63.158 0.00 0.00 0.00 5.80
2491 7087 0.040204 CTGAAAAGTGGAGGGGGCAT 59.960 55.000 0.00 0.00 0.00 4.40
2492 7088 0.486879 TGAAAAGTGGAGGGGGCATT 59.513 50.000 0.00 0.00 0.00 3.56
2493 7089 0.897621 GAAAAGTGGAGGGGGCATTG 59.102 55.000 0.00 0.00 0.00 2.82
2494 7090 0.486879 AAAAGTGGAGGGGGCATTGA 59.513 50.000 0.00 0.00 0.00 2.57
2495 7091 0.712380 AAAGTGGAGGGGGCATTGAT 59.288 50.000 0.00 0.00 0.00 2.57
2496 7092 0.032813 AAGTGGAGGGGGCATTGATG 60.033 55.000 0.00 0.00 0.00 3.07
2499 7096 2.704424 GGAGGGGGCATTGATGGGT 61.704 63.158 0.00 0.00 0.00 4.51
2539 7136 0.903454 GGTCCGTGGGAAGGAAGAGA 60.903 60.000 0.00 0.00 39.84 3.10
2548 7145 2.414806 GGAAGGAAGAGACCGTGAAAC 58.585 52.381 0.00 0.00 34.73 2.78
2554 7151 4.095932 AGGAAGAGACCGTGAAACAAAAAC 59.904 41.667 0.00 0.00 35.74 2.43
2567 7164 3.177997 ACAAAAACAGTGGCAATGTCC 57.822 42.857 21.79 0.00 0.00 4.02
2571 7170 2.291209 AACAGTGGCAATGTCCATCA 57.709 45.000 21.79 0.00 38.57 3.07
2588 7187 3.388676 CCATCACGGTGTAGGGGTTATTA 59.611 47.826 8.17 0.00 0.00 0.98
2601 7201 4.070009 GGGGTTATTATGAATGGGACGAC 58.930 47.826 0.00 0.00 0.00 4.34
2711 7313 2.838736 TCGAATTGGGCTAGAATCAGC 58.161 47.619 0.00 0.00 41.02 4.26
2713 7315 1.876156 GAATTGGGCTAGAATCAGCGG 59.124 52.381 0.00 0.00 42.76 5.52
2715 7317 2.281139 GGGCTAGAATCAGCGGGC 60.281 66.667 0.00 0.00 42.76 6.13
2734 7336 1.227556 CTTCGGCGTATTGGAGGGG 60.228 63.158 6.85 0.00 0.00 4.79
2735 7337 2.660258 CTTCGGCGTATTGGAGGGGG 62.660 65.000 6.85 0.00 0.00 5.40
2777 7379 4.954202 TGGTCGATTAGGTGATGTAGAAGT 59.046 41.667 0.00 0.00 0.00 3.01
2812 7414 8.230486 GTGGTCTTTGAGTATTTGATGTTGTAG 58.770 37.037 0.00 0.00 0.00 2.74
2850 7452 1.148048 GAGATGCAAGGGGAGAGCC 59.852 63.158 0.00 0.00 0.00 4.70
2879 7481 5.940470 ACCTTGACTTAGTCCATTTTAGCAG 59.060 40.000 10.10 0.00 0.00 4.24
2892 7494 7.276438 GTCCATTTTAGCAGTTGATCCAATTTC 59.724 37.037 0.00 0.00 0.00 2.17
2903 7505 2.286365 TCCAATTTCAGGGACACCAC 57.714 50.000 0.00 0.00 40.13 4.16
2917 7519 1.348064 CACCACTTAGGAGGACCACA 58.652 55.000 0.00 0.00 41.22 4.17
2933 7535 5.246429 AGGACCACAGTTTTACTAGAAGAGG 59.754 44.000 0.00 0.00 0.00 3.69
2948 7556 4.421131 AGAAGAGGGTAGTGTGTGAATCT 58.579 43.478 0.00 0.00 0.00 2.40
2953 7561 5.654650 AGAGGGTAGTGTGTGAATCTAAGAG 59.345 44.000 0.00 0.00 0.00 2.85
2992 7600 5.896073 AACCCTTATGAGTAGGAATGAGG 57.104 43.478 0.00 0.00 34.56 3.86
3003 7611 5.200483 AGTAGGAATGAGGAGAAGAGAGTG 58.800 45.833 0.00 0.00 0.00 3.51
3043 7651 8.581578 TCAAAAGCTTTACGGGAATAGATTTTT 58.418 29.630 13.10 0.00 34.95 1.94
3074 7682 1.239347 GGGTGCCTTTCTTGAGTGAC 58.761 55.000 0.00 0.00 0.00 3.67
3141 7750 6.157645 AGACCTTACATTGATGAATCCAGTCT 59.842 38.462 0.00 0.00 0.00 3.24
3170 7779 1.061546 GAACAAGGAGGTGGGGTACA 58.938 55.000 0.00 0.00 0.00 2.90
3173 7782 0.840722 CAAGGAGGTGGGGTACAGGT 60.841 60.000 0.00 0.00 0.00 4.00
3186 7795 5.001874 GGGGTACAGGTTTTAGTCTTTCAG 58.998 45.833 0.00 0.00 0.00 3.02
3195 7804 7.226720 CAGGTTTTAGTCTTTCAGTTAGAAGCA 59.773 37.037 0.00 0.00 37.57 3.91
3198 7807 7.672983 TTTAGTCTTTCAGTTAGAAGCATGG 57.327 36.000 0.00 0.00 37.57 3.66
3227 7836 0.878416 TGCGACGGGAAAATTTGGAG 59.122 50.000 0.00 0.00 0.00 3.86
3234 7844 5.391312 ACGGGAAAATTTGGAGAAAGATG 57.609 39.130 0.00 0.00 0.00 2.90
3245 7855 4.803452 TGGAGAAAGATGGGTCAAAAGTT 58.197 39.130 0.00 0.00 0.00 2.66
3252 7862 4.415596 AGATGGGTCAAAAGTTATTGGCA 58.584 39.130 0.00 0.00 36.64 4.92
3254 7864 3.571590 TGGGTCAAAAGTTATTGGCAGT 58.428 40.909 0.00 0.00 36.64 4.40
3258 7868 4.321230 GGTCAAAAGTTATTGGCAGTCCTG 60.321 45.833 0.00 0.00 36.64 3.86
3259 7869 4.278419 GTCAAAAGTTATTGGCAGTCCTGT 59.722 41.667 0.00 0.00 35.04 4.00
3274 9014 0.037975 CCTGTCATTGTTGCCCTTGC 60.038 55.000 0.00 0.00 38.26 4.01
3314 9054 7.826252 TGCTCTCTTGAAATATTCTATATGGGC 59.174 37.037 0.00 0.00 0.00 5.36
3319 9059 8.103305 TCTTGAAATATTCTATATGGGCAGTCC 58.897 37.037 0.00 0.00 0.00 3.85
3359 9099 2.242043 CAAGGGGAGAACTGCATGTTT 58.758 47.619 0.00 0.00 39.30 2.83
3370 9110 2.493278 ACTGCATGTTTTATGGAGTGCC 59.507 45.455 12.28 0.00 46.50 5.01
3384 9124 4.575885 TGGAGTGCCAATACTTTCTGTAC 58.424 43.478 0.00 0.00 42.49 2.90
3390 9130 6.017109 AGTGCCAATACTTTCTGTACAAACTG 60.017 38.462 0.00 0.00 33.45 3.16
3393 9133 6.348540 GCCAATACTTTCTGTACAAACTGAGG 60.349 42.308 0.00 0.00 35.32 3.86
3395 9135 3.131396 ACTTTCTGTACAAACTGAGGCG 58.869 45.455 0.00 0.00 35.32 5.52
3409 9149 3.190874 CTGAGGCGAAAACCATCTAGTC 58.809 50.000 0.00 0.00 0.00 2.59
3422 10895 1.319541 TCTAGTCCATGGCTAGCGTC 58.680 55.000 26.10 0.00 36.71 5.19
3438 10911 5.397534 GCTAGCGTCAATTTTCATATGCAAG 59.602 40.000 0.00 0.00 0.00 4.01
3456 10929 2.322355 AGAAGGCATCATCACTTCCG 57.678 50.000 0.00 0.00 41.06 4.30
3459 10932 1.742761 AGGCATCATCACTTCCGTTG 58.257 50.000 0.00 0.00 0.00 4.10
3474 10947 0.609131 CGTTGTGGAGAAAGGGGCAT 60.609 55.000 0.00 0.00 0.00 4.40
3476 10949 0.776810 TTGTGGAGAAAGGGGCATCA 59.223 50.000 0.00 0.00 0.00 3.07
3478 10951 1.146774 TGTGGAGAAAGGGGCATCAAA 59.853 47.619 0.00 0.00 0.00 2.69
3486 10959 3.409804 AAGGGGCATCAAATGAGGAAT 57.590 42.857 0.00 0.00 0.00 3.01
3496 10969 6.636705 CATCAAATGAGGAATGTTGTGGAAT 58.363 36.000 0.00 0.00 0.00 3.01
3510 10983 2.374839 TGTGGAATGGAGGTTGTCATGA 59.625 45.455 0.00 0.00 0.00 3.07
3514 10987 2.134789 ATGGAGGTTGTCATGAAGGC 57.865 50.000 0.00 0.00 0.00 4.35
3516 10989 0.321653 GGAGGTTGTCATGAAGGCGT 60.322 55.000 0.00 0.00 0.00 5.68
3539 11012 2.745379 CCAAGAGGTGGTTTTGGGG 58.255 57.895 0.00 0.00 43.20 4.96
3751 11226 0.322546 AAAGGGCCATCAAGGTCGAC 60.323 55.000 7.13 7.13 45.54 4.20
3813 11288 2.290514 ACGGCCACTCTGTGTAGTAGTA 60.291 50.000 2.24 0.00 31.81 1.82
3835 11310 5.505173 AATTAGTTGCATAGCATGTCCAC 57.495 39.130 0.00 0.00 38.76 4.02
3853 11328 6.057533 TGTCCACTAGATTAATCCATTGCAG 58.942 40.000 11.92 3.25 0.00 4.41
3916 11391 5.660864 GGAGAGGGAGGGATTAATGAGATAG 59.339 48.000 0.00 0.00 0.00 2.08
3917 11392 5.029474 AGAGGGAGGGATTAATGAGATAGC 58.971 45.833 0.00 0.00 0.00 2.97
3918 11393 4.767908 AGGGAGGGATTAATGAGATAGCA 58.232 43.478 0.00 0.00 0.00 3.49
3919 11394 5.165652 AGGGAGGGATTAATGAGATAGCAA 58.834 41.667 0.00 0.00 0.00 3.91
3920 11395 5.250313 AGGGAGGGATTAATGAGATAGCAAG 59.750 44.000 0.00 0.00 0.00 4.01
3921 11396 5.249393 GGGAGGGATTAATGAGATAGCAAGA 59.751 44.000 0.00 0.00 0.00 3.02
4191 11668 7.558081 TCCATCCATTCCAACGTAAATTCAATA 59.442 33.333 0.00 0.00 0.00 1.90
4312 11789 9.104713 AGTGGGTCTGATATGATTGTATGAATA 57.895 33.333 0.00 0.00 0.00 1.75
4358 11835 6.423776 TCTAATATCTGTGACATGCCATCA 57.576 37.500 0.00 0.00 0.00 3.07
4364 11841 9.743581 AATATCTGTGACATGCCATCAATATAA 57.256 29.630 0.00 0.00 0.00 0.98
4365 11842 9.743581 ATATCTGTGACATGCCATCAATATAAA 57.256 29.630 0.00 0.00 0.00 1.40
4366 11843 7.500720 TCTGTGACATGCCATCAATATAAAG 57.499 36.000 0.00 0.00 0.00 1.85
4367 11844 7.056006 TCTGTGACATGCCATCAATATAAAGT 58.944 34.615 0.00 0.00 0.00 2.66
4368 11845 7.012610 TCTGTGACATGCCATCAATATAAAGTG 59.987 37.037 0.00 0.00 0.00 3.16
4369 11846 6.039605 TGTGACATGCCATCAATATAAAGTGG 59.960 38.462 0.00 0.00 0.00 4.00
4486 11974 4.580167 TCATTTTCTCACACTTGGGAACAG 59.420 41.667 0.00 0.00 42.25 3.16
4513 12001 4.336713 GGGTTATCAAGGATGAGAAAGTGC 59.663 45.833 0.00 0.00 38.42 4.40
4546 12041 3.706140 GCCGATCAGTAAGGCGTG 58.294 61.111 0.00 0.00 41.53 5.34
4549 12044 1.470285 GCCGATCAGTAAGGCGTGTTA 60.470 52.381 0.00 0.00 41.53 2.41
4585 12080 5.668558 AGTAATCTGGTTTTGAACACGTC 57.331 39.130 0.00 0.00 0.00 4.34
4586 12081 5.365619 AGTAATCTGGTTTTGAACACGTCT 58.634 37.500 0.00 0.00 0.00 4.18
4587 12082 5.820947 AGTAATCTGGTTTTGAACACGTCTT 59.179 36.000 0.00 0.00 0.00 3.01
4588 12083 4.813296 ATCTGGTTTTGAACACGTCTTC 57.187 40.909 0.00 0.00 0.00 2.87
4589 12084 3.601435 TCTGGTTTTGAACACGTCTTCA 58.399 40.909 1.78 1.78 0.00 3.02
4591 12086 4.456222 TCTGGTTTTGAACACGTCTTCAAA 59.544 37.500 22.66 22.66 44.63 2.69
4697 12359 5.772672 ACTAAAAATTGTACATGTGCAGGGA 59.227 36.000 16.35 2.99 0.00 4.20
4812 12480 5.584913 CCTTCTTCTATGCCTCCCTCTATA 58.415 45.833 0.00 0.00 0.00 1.31
4814 12482 7.358263 CCTTCTTCTATGCCTCCCTCTATATA 58.642 42.308 0.00 0.00 0.00 0.86
4885 12553 2.104331 CCAGTTCGATCCCGACCG 59.896 66.667 0.00 0.00 45.50 4.79
5095 12763 0.390492 CGCCTCTATGATGCCACTCA 59.610 55.000 0.00 0.00 0.00 3.41
5217 12885 1.611673 GCCAGCTAGAAGCCAAAGACA 60.612 52.381 0.00 0.00 43.77 3.41
5559 13227 3.814268 CGGCGGCATTGGTGGAAG 61.814 66.667 10.53 0.00 0.00 3.46
5594 13262 4.830765 GCACGGGAGCACGGCATA 62.831 66.667 0.00 0.00 38.39 3.14
5720 13388 3.410631 TTCTTCTACGACCAAATGCCA 57.589 42.857 0.00 0.00 0.00 4.92
5829 13497 2.125147 GCATCACCAGCAGCGGTA 60.125 61.111 8.37 0.18 37.07 4.02
5835 13503 4.087892 CCAGCAGCGGTAGTGGCT 62.088 66.667 1.77 0.00 42.61 4.75
5933 13601 3.203412 CTCGCGCTCTACCTCCGT 61.203 66.667 5.56 0.00 0.00 4.69
6013 13685 3.872696 TGGATGTGCACTAGTACAATGG 58.127 45.455 19.41 0.00 43.60 3.16
6231 13908 4.383931 AAAGGGAAAAAGGAGGGAGTAC 57.616 45.455 0.00 0.00 0.00 2.73
6574 14490 8.311836 AGACCGAATGTAGAGTTAATTTCTTCA 58.688 33.333 0.00 1.14 0.00 3.02
6768 14749 1.737838 TGTAAGAAAGCATGGCGGAG 58.262 50.000 0.00 0.00 0.00 4.63
6802 14783 5.475564 TCTTTTTAGGCAACGGATTTAGCTT 59.524 36.000 0.00 0.00 46.39 3.74
6803 14784 5.715434 TTTTAGGCAACGGATTTAGCTTT 57.285 34.783 0.00 0.00 46.39 3.51
6804 14785 5.715434 TTTAGGCAACGGATTTAGCTTTT 57.285 34.783 0.00 0.00 46.39 2.27
6805 14786 5.715434 TTAGGCAACGGATTTAGCTTTTT 57.285 34.783 0.00 0.00 46.39 1.94
6915 14902 2.223433 GCTACCGCTAGCTCGTTAGAAA 60.223 50.000 13.93 0.00 42.11 2.52
6916 14903 3.733077 GCTACCGCTAGCTCGTTAGAAAA 60.733 47.826 13.93 0.00 42.11 2.29
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
83 84 2.088104 AGACAAGCCGATCCCTATCA 57.912 50.000 0.00 0.00 31.93 2.15
93 94 3.385111 AGGTCCTTAGAATAGACAAGCCG 59.615 47.826 0.00 0.00 31.99 5.52
110 111 6.581171 AATCAAAAGATTCTGTTGAGGTCC 57.419 37.500 20.93 0.00 40.49 4.46
309 310 0.667184 CCGCGCTCCTTTGCATTTTT 60.667 50.000 5.56 0.00 0.00 1.94
317 318 1.827399 TTTCTCTCCCGCGCTCCTTT 61.827 55.000 5.56 0.00 0.00 3.11
336 337 7.243604 TCAATGCACCAATTCTAGGAAAAAT 57.756 32.000 0.00 0.00 0.00 1.82
406 413 7.059788 TGCATTGCTATCTTCATACCCTTTTA 58.940 34.615 10.49 0.00 0.00 1.52
413 420 8.945481 AGAGATATGCATTGCTATCTTCATAC 57.055 34.615 21.23 13.46 35.38 2.39
449 456 2.032799 TGTGTCGTGCAAAAACATCTCC 59.967 45.455 0.00 0.00 0.00 3.71
464 472 7.162546 CGAACATGCTCTTAAATAATTGTGTCG 59.837 37.037 0.00 0.00 0.00 4.35
511 522 7.669427 AGATAATGAGTAGGAGCTTCTTCATG 58.331 38.462 9.55 0.00 0.00 3.07
614 1008 6.489022 TCAAATTAGCTCCATCAGATCCATTG 59.511 38.462 0.00 0.00 0.00 2.82
660 1054 3.004734 GCACCTACTCTGTTGTTGCAAAT 59.995 43.478 0.00 0.00 0.00 2.32
661 1055 2.357637 GCACCTACTCTGTTGTTGCAAA 59.642 45.455 0.00 0.00 0.00 3.68
779 1173 8.044060 TCCGTTTCTTTCTTTCTATCTACGTA 57.956 34.615 0.00 0.00 0.00 3.57
780 1174 6.917533 TCCGTTTCTTTCTTTCTATCTACGT 58.082 36.000 0.00 0.00 0.00 3.57
781 1175 7.541437 ACTTCCGTTTCTTTCTTTCTATCTACG 59.459 37.037 0.00 0.00 0.00 3.51
784 1745 7.217906 ACACTTCCGTTTCTTTCTTTCTATCT 58.782 34.615 0.00 0.00 0.00 1.98
801 1762 3.374220 TGGTACTGTACAACACTTCCG 57.626 47.619 18.79 0.00 0.00 4.30
815 1776 3.871485 TGTACGTTTGTTGGTTGGTACT 58.129 40.909 0.00 0.00 33.31 2.73
828 1789 3.439825 TGATGCATGATGCTTGTACGTTT 59.560 39.130 19.19 0.00 45.31 3.60
829 1790 3.009026 TGATGCATGATGCTTGTACGTT 58.991 40.909 19.19 0.00 45.31 3.99
834 1795 5.784578 AATACATGATGCATGATGCTTGT 57.215 34.783 23.86 17.09 43.81 3.16
845 1806 7.242079 CAGCTGAGCTAATTAATACATGATGC 58.758 38.462 8.42 0.00 36.40 3.91
846 1807 7.625817 GCCAGCTGAGCTAATTAATACATGATG 60.626 40.741 17.39 0.00 36.40 3.07
849 1810 5.471116 TGCCAGCTGAGCTAATTAATACATG 59.529 40.000 17.39 0.00 36.40 3.21
850 1811 5.624159 TGCCAGCTGAGCTAATTAATACAT 58.376 37.500 17.39 0.00 36.40 2.29
853 1814 6.298361 TCATTGCCAGCTGAGCTAATTAATA 58.702 36.000 17.39 0.00 36.40 0.98
854 1815 5.135383 TCATTGCCAGCTGAGCTAATTAAT 58.865 37.500 17.39 9.17 36.40 1.40
856 1817 4.155063 TCATTGCCAGCTGAGCTAATTA 57.845 40.909 17.39 8.24 36.40 1.40
857 1818 3.008835 TCATTGCCAGCTGAGCTAATT 57.991 42.857 17.39 0.00 36.40 1.40
858 1819 2.723322 TCATTGCCAGCTGAGCTAAT 57.277 45.000 17.39 14.76 36.40 1.73
860 1821 2.723322 ATTCATTGCCAGCTGAGCTA 57.277 45.000 17.39 14.07 36.40 3.32
861 1822 1.848652 AATTCATTGCCAGCTGAGCT 58.151 45.000 17.39 0.00 40.77 4.09
862 1823 2.667473 AAATTCATTGCCAGCTGAGC 57.333 45.000 17.39 17.32 0.00 4.26
885 1847 5.122082 ACAAAAATCTTTGCCAGTTGTGTTG 59.878 36.000 0.00 0.00 44.96 3.33
914 1876 1.680555 GGTTGTGTGTCCCTGTCAACA 60.681 52.381 0.00 0.00 39.71 3.33
923 1885 4.083271 GCAGAATCTTTAGGTTGTGTGTCC 60.083 45.833 2.40 0.00 0.00 4.02
976 1938 2.442413 ACACCTCTCAGCTGTACTCTC 58.558 52.381 14.67 0.00 0.00 3.20
984 1951 1.857965 TCATGCTACACCTCTCAGCT 58.142 50.000 0.00 0.00 36.26 4.24
985 1952 2.481854 CATCATGCTACACCTCTCAGC 58.518 52.381 0.00 0.00 35.82 4.26
986 1953 2.224233 CCCATCATGCTACACCTCTCAG 60.224 54.545 0.00 0.00 0.00 3.35
1037 2004 0.461961 CTCATCTTCCGTGTCCTCCC 59.538 60.000 0.00 0.00 0.00 4.30
1157 2127 2.257691 TAGCTAGCTAGGACGGTCAG 57.742 55.000 20.67 0.67 0.00 3.51
1179 2152 4.218200 TGATGAGTTGTCGCCAATGAAAAT 59.782 37.500 0.00 0.00 32.11 1.82
1198 2179 4.321008 GGCCATGTTGATAGCAGATTGATG 60.321 45.833 0.00 0.00 0.00 3.07
1244 2225 1.812922 GCGACCTCCATCACTGCAG 60.813 63.158 13.48 13.48 0.00 4.41
1494 2478 1.850515 GCCGCACGTTGAAATGTATCG 60.851 52.381 0.00 0.00 0.00 2.92
1510 4816 2.897350 GCCTACTGATGGTGCCGC 60.897 66.667 0.00 0.00 0.00 6.53
1542 4860 3.120060 GCGCAATCAAGTTTCAGATGTCT 60.120 43.478 0.30 0.00 0.00 3.41
1707 5684 0.179137 TCGCAAGTACTCCGCATCAG 60.179 55.000 15.32 2.08 39.48 2.90
1772 6082 3.651803 TTTTGCGGGGATTGTTACTTG 57.348 42.857 0.00 0.00 0.00 3.16
1838 6150 3.256704 AGGAACTAACAGTCATTCCCCA 58.743 45.455 6.76 0.00 41.39 4.96
1908 6325 6.608002 TGGTCAAAGTTTTACACTAAATGGGT 59.392 34.615 2.54 0.00 32.94 4.51
1921 6342 7.176589 TGGTTAACTTCATGGTCAAAGTTTT 57.823 32.000 13.56 0.00 41.67 2.43
2060 6550 4.347583 TCCTTCCAACATTTTCAGCCAAAT 59.652 37.500 0.00 0.00 0.00 2.32
2067 6557 5.392995 TGGATCTTCCTTCCAACATTTTCA 58.607 37.500 0.00 0.00 40.29 2.69
2088 6578 2.174639 TGGGCTATTGTCCAACCTATGG 59.825 50.000 0.00 0.00 46.26 2.74
2089 6579 3.576078 TGGGCTATTGTCCAACCTATG 57.424 47.619 0.00 0.00 46.26 2.23
2097 6587 3.195396 TCAAGCAAAATGGGCTATTGTCC 59.805 43.478 0.00 0.00 41.66 4.02
2098 6588 4.427312 CTCAAGCAAAATGGGCTATTGTC 58.573 43.478 0.00 0.00 41.66 3.18
2099 6589 3.368739 GCTCAAGCAAAATGGGCTATTGT 60.369 43.478 0.00 0.00 41.17 2.71
2100 6590 3.192466 GCTCAAGCAAAATGGGCTATTG 58.808 45.455 0.00 0.00 41.17 1.90
2101 6591 3.531934 GCTCAAGCAAAATGGGCTATT 57.468 42.857 0.00 0.00 41.17 1.73
2105 6595 2.428171 TGATAGCTCAAGCAAAATGGGC 59.572 45.455 4.59 0.00 44.80 5.36
2106 6596 3.949754 TCTGATAGCTCAAGCAAAATGGG 59.050 43.478 4.59 0.00 45.16 4.00
2107 6597 4.639310 AGTCTGATAGCTCAAGCAAAATGG 59.361 41.667 4.59 0.00 45.16 3.16
2108 6598 5.814764 AGTCTGATAGCTCAAGCAAAATG 57.185 39.130 4.59 0.00 45.16 2.32
2109 6599 6.054295 CCTAGTCTGATAGCTCAAGCAAAAT 58.946 40.000 4.59 0.00 45.16 1.82
2110 6600 5.423015 CCTAGTCTGATAGCTCAAGCAAAA 58.577 41.667 4.59 0.00 45.16 2.44
2111 6601 4.141846 CCCTAGTCTGATAGCTCAAGCAAA 60.142 45.833 4.59 0.00 45.16 3.68
2112 6602 3.386078 CCCTAGTCTGATAGCTCAAGCAA 59.614 47.826 4.59 0.00 45.16 3.91
2113 6603 2.961741 CCCTAGTCTGATAGCTCAAGCA 59.038 50.000 4.59 0.00 45.16 3.91
2114 6604 2.962421 ACCCTAGTCTGATAGCTCAAGC 59.038 50.000 0.00 0.00 42.49 4.01
2115 6605 3.320541 CCACCCTAGTCTGATAGCTCAAG 59.679 52.174 0.00 0.00 0.00 3.02
2116 6606 3.300388 CCACCCTAGTCTGATAGCTCAA 58.700 50.000 0.00 0.00 0.00 3.02
2117 6607 2.245028 ACCACCCTAGTCTGATAGCTCA 59.755 50.000 0.00 0.00 0.00 4.26
2118 6608 2.625790 CACCACCCTAGTCTGATAGCTC 59.374 54.545 0.00 0.00 0.00 4.09
2119 6609 2.245028 TCACCACCCTAGTCTGATAGCT 59.755 50.000 0.00 0.00 0.00 3.32
2120 6610 2.667470 TCACCACCCTAGTCTGATAGC 58.333 52.381 0.00 0.00 0.00 2.97
2121 6611 4.038522 CACATCACCACCCTAGTCTGATAG 59.961 50.000 0.00 0.00 0.00 2.08
2122 6612 3.960755 CACATCACCACCCTAGTCTGATA 59.039 47.826 0.00 0.00 0.00 2.15
2123 6613 2.768527 CACATCACCACCCTAGTCTGAT 59.231 50.000 0.00 0.00 0.00 2.90
2124 6614 2.179427 CACATCACCACCCTAGTCTGA 58.821 52.381 0.00 0.00 0.00 3.27
2125 6615 1.208052 CCACATCACCACCCTAGTCTG 59.792 57.143 0.00 0.00 0.00 3.51
2126 6616 1.573108 CCACATCACCACCCTAGTCT 58.427 55.000 0.00 0.00 0.00 3.24
2127 6617 0.541863 CCCACATCACCACCCTAGTC 59.458 60.000 0.00 0.00 0.00 2.59
2128 6618 0.178873 ACCCACATCACCACCCTAGT 60.179 55.000 0.00 0.00 0.00 2.57
2129 6619 1.762957 CTACCCACATCACCACCCTAG 59.237 57.143 0.00 0.00 0.00 3.02
2130 6620 1.363280 TCTACCCACATCACCACCCTA 59.637 52.381 0.00 0.00 0.00 3.53
2131 6621 0.118346 TCTACCCACATCACCACCCT 59.882 55.000 0.00 0.00 0.00 4.34
2132 6622 0.541863 CTCTACCCACATCACCACCC 59.458 60.000 0.00 0.00 0.00 4.61
2133 6623 1.276622 ACTCTACCCACATCACCACC 58.723 55.000 0.00 0.00 0.00 4.61
2134 6624 2.431057 CCTACTCTACCCACATCACCAC 59.569 54.545 0.00 0.00 0.00 4.16
2135 6625 2.313643 TCCTACTCTACCCACATCACCA 59.686 50.000 0.00 0.00 0.00 4.17
2136 6626 2.959707 CTCCTACTCTACCCACATCACC 59.040 54.545 0.00 0.00 0.00 4.02
2137 6627 3.633418 ACTCCTACTCTACCCACATCAC 58.367 50.000 0.00 0.00 0.00 3.06
2138 6628 4.725304 TCTACTCCTACTCTACCCACATCA 59.275 45.833 0.00 0.00 0.00 3.07
2139 6629 5.307544 TCTACTCCTACTCTACCCACATC 57.692 47.826 0.00 0.00 0.00 3.06
2140 6630 5.933846 ATCTACTCCTACTCTACCCACAT 57.066 43.478 0.00 0.00 0.00 3.21
2141 6631 6.012683 GGATATCTACTCCTACTCTACCCACA 60.013 46.154 2.05 0.00 0.00 4.17
2142 6632 6.417258 GGATATCTACTCCTACTCTACCCAC 58.583 48.000 2.05 0.00 0.00 4.61
2143 6633 5.189342 CGGATATCTACTCCTACTCTACCCA 59.811 48.000 2.05 0.00 0.00 4.51
2144 6634 5.396660 CCGGATATCTACTCCTACTCTACCC 60.397 52.000 0.00 0.00 0.00 3.69
2145 6635 5.396660 CCCGGATATCTACTCCTACTCTACC 60.397 52.000 0.73 0.00 0.00 3.18
2146 6636 5.396660 CCCCGGATATCTACTCCTACTCTAC 60.397 52.000 0.73 0.00 0.00 2.59
2147 6637 4.720773 CCCCGGATATCTACTCCTACTCTA 59.279 50.000 0.73 0.00 0.00 2.43
2148 6638 3.524380 CCCCGGATATCTACTCCTACTCT 59.476 52.174 0.73 0.00 0.00 3.24
2149 6639 3.888583 CCCCGGATATCTACTCCTACTC 58.111 54.545 0.73 0.00 0.00 2.59
2150 6640 2.025131 GCCCCGGATATCTACTCCTACT 60.025 54.545 0.73 0.00 0.00 2.57
2151 6641 2.377073 GCCCCGGATATCTACTCCTAC 58.623 57.143 0.73 0.00 0.00 3.18
2152 6642 1.064906 CGCCCCGGATATCTACTCCTA 60.065 57.143 0.73 0.00 0.00 2.94
2153 6643 0.323542 CGCCCCGGATATCTACTCCT 60.324 60.000 0.73 0.00 0.00 3.69
2154 6644 1.946475 GCGCCCCGGATATCTACTCC 61.946 65.000 0.73 0.00 0.00 3.85
2155 6645 1.511768 GCGCCCCGGATATCTACTC 59.488 63.158 0.73 0.00 0.00 2.59
2156 6646 1.982938 GGCGCCCCGGATATCTACT 60.983 63.158 18.11 0.00 0.00 2.57
2157 6647 2.227089 CTGGCGCCCCGGATATCTAC 62.227 65.000 26.77 0.00 40.14 2.59
2158 6648 1.982395 CTGGCGCCCCGGATATCTA 60.982 63.158 26.77 0.00 40.14 1.98
2159 6649 3.314331 CTGGCGCCCCGGATATCT 61.314 66.667 26.77 0.00 40.14 1.98
2160 6650 2.391724 TTTCTGGCGCCCCGGATATC 62.392 60.000 26.77 0.00 45.81 1.63
2161 6651 2.397413 CTTTCTGGCGCCCCGGATAT 62.397 60.000 26.77 0.00 45.81 1.63
2162 6652 3.084646 TTTCTGGCGCCCCGGATA 61.085 61.111 26.77 11.75 45.81 2.59
2163 6653 4.489771 CTTTCTGGCGCCCCGGAT 62.490 66.667 26.77 0.00 45.81 4.18
2167 6657 4.678743 AACCCTTTCTGGCGCCCC 62.679 66.667 26.77 0.00 0.00 5.80
2168 6658 3.373565 CAACCCTTTCTGGCGCCC 61.374 66.667 26.77 6.44 0.00 6.13
2169 6659 3.373565 CCAACCCTTTCTGGCGCC 61.374 66.667 22.73 22.73 0.00 6.53
2173 6663 1.354368 TCCTAAGCCAACCCTTTCTGG 59.646 52.381 0.00 0.00 35.67 3.86
2174 6664 2.716217 CTCCTAAGCCAACCCTTTCTG 58.284 52.381 0.00 0.00 0.00 3.02
2175 6665 1.004862 GCTCCTAAGCCAACCCTTTCT 59.995 52.381 0.00 0.00 43.10 2.52
2176 6666 1.464734 GCTCCTAAGCCAACCCTTTC 58.535 55.000 0.00 0.00 43.10 2.62
2177 6667 3.672066 GCTCCTAAGCCAACCCTTT 57.328 52.632 0.00 0.00 43.10 3.11
2241 6836 2.232208 CCCTCCAACAAATCTCCTTTGC 59.768 50.000 0.00 0.00 46.81 3.68
2265 6860 5.163457 GGATAACCATAAACAACCACATGGG 60.163 44.000 2.32 0.00 41.90 4.00
2266 6861 5.420421 TGGATAACCATAAACAACCACATGG 59.580 40.000 0.00 0.00 41.77 3.66
2322 6917 1.455217 ATAGCCGCTACTCCCACGT 60.455 57.895 1.14 0.00 0.00 4.49
2338 6933 3.925379 CGATAGGTGCAATGCTACCATA 58.075 45.455 22.18 14.34 39.46 2.74
2355 6950 2.229792 GCAAATGCCCAATCTCCGATA 58.770 47.619 0.00 0.00 34.31 2.92
2363 6958 2.879646 CAAACTGTTGCAAATGCCCAAT 59.120 40.909 0.00 0.00 41.18 3.16
2413 7009 3.129852 TCAACAACGTGCTTCACAAAG 57.870 42.857 0.00 0.00 33.40 2.77
2414 7010 3.433709 CATCAACAACGTGCTTCACAAA 58.566 40.909 0.00 0.00 33.40 2.83
2489 7085 5.925969 GGTTTACAAGTTTCACCCATCAATG 59.074 40.000 0.00 0.00 0.00 2.82
2491 7087 5.205056 AGGTTTACAAGTTTCACCCATCAA 58.795 37.500 0.00 0.00 0.00 2.57
2492 7088 4.798882 AGGTTTACAAGTTTCACCCATCA 58.201 39.130 0.00 0.00 0.00 3.07
2493 7089 5.414765 CCTAGGTTTACAAGTTTCACCCATC 59.585 44.000 0.00 0.00 0.00 3.51
2494 7090 5.163023 ACCTAGGTTTACAAGTTTCACCCAT 60.163 40.000 9.21 0.00 0.00 4.00
2495 7091 4.166531 ACCTAGGTTTACAAGTTTCACCCA 59.833 41.667 9.21 0.00 0.00 4.51
2496 7092 4.722220 ACCTAGGTTTACAAGTTTCACCC 58.278 43.478 9.21 0.00 0.00 4.61
2524 7121 1.215647 CGGTCTCTTCCTTCCCACG 59.784 63.158 0.00 0.00 0.00 4.94
2539 7136 2.672760 GCCACTGTTTTTGTTTCACGGT 60.673 45.455 0.00 0.00 0.00 4.83
2548 7145 3.176552 TGGACATTGCCACTGTTTTTG 57.823 42.857 0.00 0.00 31.66 2.44
2554 7151 0.448990 CGTGATGGACATTGCCACTG 59.551 55.000 2.52 0.00 41.56 3.66
2567 7164 3.553828 AATAACCCCTACACCGTGATG 57.446 47.619 5.28 0.00 0.00 3.07
2571 7170 5.455612 CCATTCATAATAACCCCTACACCGT 60.456 44.000 0.00 0.00 0.00 4.83
2588 7187 1.220749 CCACCGTCGTCCCATTCAT 59.779 57.895 0.00 0.00 0.00 2.57
2601 7201 2.880963 AATGTTCCACAAAACCACCG 57.119 45.000 0.00 0.00 0.00 4.94
2692 7292 1.528586 CGCTGATTCTAGCCCAATTCG 59.471 52.381 0.00 0.00 40.59 3.34
2736 7338 2.060275 CCATAACTTACCCCTACCCCC 58.940 57.143 0.00 0.00 0.00 5.40
2737 7339 2.707791 GACCATAACTTACCCCTACCCC 59.292 54.545 0.00 0.00 0.00 4.95
2738 7340 2.366590 CGACCATAACTTACCCCTACCC 59.633 54.545 0.00 0.00 0.00 3.69
2754 7356 4.954202 ACTTCTACATCACCTAATCGACCA 59.046 41.667 0.00 0.00 0.00 4.02
2777 7379 4.963318 ACTCAAAGACCACTCAGATGAA 57.037 40.909 0.00 0.00 0.00 2.57
2812 7414 6.500684 TCTCCTTCATTGTTGCAGAATTAC 57.499 37.500 0.00 0.00 0.00 1.89
2816 7418 3.192001 GCATCTCCTTCATTGTTGCAGAA 59.808 43.478 0.00 0.00 0.00 3.02
2825 7427 1.925255 TCCCCTTGCATCTCCTTCATT 59.075 47.619 0.00 0.00 0.00 2.57
2830 7432 1.344191 GCTCTCCCCTTGCATCTCCT 61.344 60.000 0.00 0.00 0.00 3.69
2850 7452 3.868757 TGGACTAAGTCAAGGTGATCG 57.131 47.619 0.00 0.00 33.68 3.69
2879 7481 3.193479 GGTGTCCCTGAAATTGGATCAAC 59.807 47.826 0.00 0.00 32.20 3.18
2892 7494 0.905357 CCTCCTAAGTGGTGTCCCTG 59.095 60.000 0.00 0.00 37.07 4.45
2903 7505 5.485209 AGTAAAACTGTGGTCCTCCTAAG 57.515 43.478 0.00 0.00 34.23 2.18
2917 7519 6.781507 ACACACTACCCTCTTCTAGTAAAACT 59.218 38.462 0.00 0.00 0.00 2.66
2933 7535 6.688578 TGTTCTCTTAGATTCACACACTACC 58.311 40.000 0.00 0.00 0.00 3.18
2948 7556 3.786553 TCCTACCAGCCTTGTTCTCTTA 58.213 45.455 0.00 0.00 0.00 2.10
2953 7561 2.160205 GGTTTCCTACCAGCCTTGTTC 58.840 52.381 0.00 0.00 46.92 3.18
2975 7583 7.587258 TCTCTTCTCCTCATTCCTACTCATAA 58.413 38.462 0.00 0.00 0.00 1.90
2978 7586 5.044476 ACTCTCTTCTCCTCATTCCTACTCA 60.044 44.000 0.00 0.00 0.00 3.41
2980 7588 5.200483 CACTCTCTTCTCCTCATTCCTACT 58.800 45.833 0.00 0.00 0.00 2.57
2992 7600 0.598562 TCGTGTGGCACTCTCTTCTC 59.401 55.000 19.83 0.00 31.34 2.87
3043 7651 4.229582 AGAAAGGCACCCAATATGACCTTA 59.770 41.667 0.00 0.00 34.52 2.69
3053 7661 1.214175 TCACTCAAGAAAGGCACCCAA 59.786 47.619 0.00 0.00 0.00 4.12
3074 7682 3.216800 TGCCCATATTTCTTAGCTGCTG 58.783 45.455 13.43 0.00 0.00 4.41
3104 7713 8.053026 TCAATGTAAGGTCTACTGTAGAGAAC 57.947 38.462 17.43 12.84 35.04 3.01
3111 7720 7.092891 TGGATTCATCAATGTAAGGTCTACTGT 60.093 37.037 0.00 0.00 0.00 3.55
3113 7722 7.126421 ACTGGATTCATCAATGTAAGGTCTACT 59.874 37.037 0.00 0.00 0.00 2.57
3120 7729 8.085720 GATGAGACTGGATTCATCAATGTAAG 57.914 38.462 9.03 0.00 45.68 2.34
3141 7750 4.074259 CACCTCCTTGTTCACAATGATGA 58.926 43.478 7.07 0.00 35.02 2.92
3162 7771 4.412858 TGAAAGACTAAAACCTGTACCCCA 59.587 41.667 0.00 0.00 0.00 4.96
3170 7779 7.280356 TGCTTCTAACTGAAAGACTAAAACCT 58.720 34.615 0.00 0.00 37.43 3.50
3173 7782 7.308589 GCCATGCTTCTAACTGAAAGACTAAAA 60.309 37.037 0.00 0.00 37.43 1.52
3186 7795 1.753073 AGCCATTGCCATGCTTCTAAC 59.247 47.619 0.00 0.00 38.69 2.34
3227 7836 5.869344 GCCAATAACTTTTGACCCATCTTTC 59.131 40.000 0.00 0.00 0.00 2.62
3234 7844 3.056821 GGACTGCCAATAACTTTTGACCC 60.057 47.826 0.00 0.00 0.00 4.46
3245 7855 3.719268 ACAATGACAGGACTGCCAATA 57.281 42.857 0.00 0.00 36.29 1.90
3252 7862 0.773644 AGGGCAACAATGACAGGACT 59.226 50.000 0.00 0.00 35.69 3.85
3254 7864 1.619654 CAAGGGCAACAATGACAGGA 58.380 50.000 0.00 0.00 35.69 3.86
3258 7868 0.109597 CTCGCAAGGGCAACAATGAC 60.110 55.000 0.00 0.00 41.24 3.06
3259 7869 0.250684 TCTCGCAAGGGCAACAATGA 60.251 50.000 0.00 0.00 41.24 2.57
3274 9014 6.445475 TCAAGAGAGCATATGATTCTTCTCG 58.555 40.000 6.97 2.19 0.00 4.04
3308 9048 0.327924 CCACAACTGGACTGCCCATA 59.672 55.000 0.00 0.00 45.57 2.74
3352 9092 3.591196 TTGGCACTCCATAAAACATGC 57.409 42.857 0.00 0.00 43.05 4.06
3359 9099 5.815581 ACAGAAAGTATTGGCACTCCATAA 58.184 37.500 0.00 0.00 43.05 1.90
3370 9110 6.603095 GCCTCAGTTTGTACAGAAAGTATTG 58.397 40.000 0.00 0.00 34.67 1.90
3384 9124 2.554032 AGATGGTTTTCGCCTCAGTTTG 59.446 45.455 0.00 0.00 0.00 2.93
3390 9130 2.093658 TGGACTAGATGGTTTTCGCCTC 60.094 50.000 0.00 0.00 0.00 4.70
3393 9133 2.614057 CCATGGACTAGATGGTTTTCGC 59.386 50.000 5.56 0.00 36.38 4.70
3395 9135 3.891049 AGCCATGGACTAGATGGTTTTC 58.109 45.455 18.40 0.00 42.25 2.29
3409 9149 2.423185 TGAAAATTGACGCTAGCCATGG 59.577 45.455 7.63 7.63 0.00 3.66
3438 10911 2.029838 ACGGAAGTGATGATGCCTTC 57.970 50.000 0.00 0.00 46.97 3.46
3456 10929 1.177401 GATGCCCCTTTCTCCACAAC 58.823 55.000 0.00 0.00 0.00 3.32
3459 10932 1.923356 TTTGATGCCCCTTTCTCCAC 58.077 50.000 0.00 0.00 0.00 4.02
3470 10943 4.178540 CACAACATTCCTCATTTGATGCC 58.821 43.478 0.00 0.00 0.00 4.40
3474 10947 5.047164 CCATTCCACAACATTCCTCATTTGA 60.047 40.000 0.00 0.00 0.00 2.69
3476 10949 5.085920 TCCATTCCACAACATTCCTCATTT 58.914 37.500 0.00 0.00 0.00 2.32
3478 10951 4.275810 CTCCATTCCACAACATTCCTCAT 58.724 43.478 0.00 0.00 0.00 2.90
3486 10959 2.092158 TGACAACCTCCATTCCACAACA 60.092 45.455 0.00 0.00 0.00 3.33
3496 10969 0.321564 CGCCTTCATGACAACCTCCA 60.322 55.000 0.00 0.00 0.00 3.86
3510 10983 0.763035 ACCTCTTGGTGTTACGCCTT 59.237 50.000 16.35 0.00 46.51 4.35
3597 11072 5.570205 TGACCAACAGGTAAATGTCCTAA 57.430 39.130 0.00 0.00 35.25 2.69
3598 11073 5.013704 ACATGACCAACAGGTAAATGTCCTA 59.986 40.000 0.00 0.00 41.82 2.94
3599 11074 4.202567 ACATGACCAACAGGTAAATGTCCT 60.203 41.667 0.00 0.00 41.82 3.85
3612 11087 6.421801 CCTCAAATTCTTTTCACATGACCAAC 59.578 38.462 0.00 0.00 0.00 3.77
3708 11183 5.538053 TGGATTTGCAAACATGAAAGTAGGA 59.462 36.000 15.41 0.00 0.00 2.94
3778 11253 1.936547 TGGCCGTTTTTCATGCAAAAC 59.063 42.857 19.74 19.74 41.41 2.43
3781 11256 0.749649 AGTGGCCGTTTTTCATGCAA 59.250 45.000 0.00 0.00 0.00 4.08
3813 11288 5.195940 AGTGGACATGCTATGCAACTAATT 58.804 37.500 0.00 0.00 43.62 1.40
3835 11310 7.714377 ACTTGAGACTGCAATGGATTAATCTAG 59.286 37.037 14.95 0.00 0.00 2.43
3892 11367 3.863086 TCTCATTAATCCCTCCCTCTCC 58.137 50.000 0.00 0.00 0.00 3.71
3916 11391 2.685388 GCCAAGGGAGATAACTTCTTGC 59.315 50.000 9.82 4.78 36.90 4.01
3917 11392 3.054065 AGGCCAAGGGAGATAACTTCTTG 60.054 47.826 5.01 8.87 37.40 3.02
3918 11393 3.193782 AGGCCAAGGGAGATAACTTCTT 58.806 45.455 5.01 0.00 33.74 2.52
3919 11394 2.852130 AGGCCAAGGGAGATAACTTCT 58.148 47.619 5.01 0.00 37.41 2.85
3920 11395 3.282885 CAAGGCCAAGGGAGATAACTTC 58.717 50.000 5.01 0.00 0.00 3.01
3921 11396 2.621668 GCAAGGCCAAGGGAGATAACTT 60.622 50.000 5.01 0.00 0.00 2.66
3954 11429 0.107831 TTCAGGTTTGTGAGGTCCCG 59.892 55.000 0.00 0.00 0.00 5.14
4279 11756 8.109634 ACAATCATATCAGACCCACTTTAACTT 58.890 33.333 0.00 0.00 0.00 2.66
4287 11764 9.896645 ATATTCATACAATCATATCAGACCCAC 57.103 33.333 0.00 0.00 0.00 4.61
4358 11835 5.063880 GGCTCATCGAACCCACTTTATATT 58.936 41.667 0.00 0.00 0.00 1.28
4364 11841 0.036010 CAGGCTCATCGAACCCACTT 60.036 55.000 0.00 0.00 0.00 3.16
4365 11842 1.599047 CAGGCTCATCGAACCCACT 59.401 57.895 0.00 0.00 0.00 4.00
4366 11843 1.450312 CCAGGCTCATCGAACCCAC 60.450 63.158 0.00 0.00 0.00 4.61
4367 11844 2.989639 CCAGGCTCATCGAACCCA 59.010 61.111 0.00 0.00 0.00 4.51
4368 11845 2.514824 GCCAGGCTCATCGAACCC 60.515 66.667 3.29 0.00 0.00 4.11
4369 11846 1.153086 ATGCCAGGCTCATCGAACC 60.153 57.895 14.15 0.00 0.00 3.62
4468 11956 1.810031 CGCTGTTCCCAAGTGTGAGAA 60.810 52.381 0.00 0.00 0.00 2.87
4486 11974 0.472471 TCATCCTTGATAACCCCCGC 59.528 55.000 0.00 0.00 0.00 6.13
4513 12001 2.985896 TCGGCTTCTTAAAGGGTCATG 58.014 47.619 0.00 0.00 32.79 3.07
4543 12031 5.607119 ACTACAGAGGCAAAAATAACACG 57.393 39.130 0.00 0.00 0.00 4.49
4546 12041 8.398665 CCAGATTACTACAGAGGCAAAAATAAC 58.601 37.037 0.00 0.00 0.00 1.89
4549 12044 6.485171 ACCAGATTACTACAGAGGCAAAAAT 58.515 36.000 0.00 0.00 0.00 1.82
4646 12176 6.144402 GTCAGTGTTTGCTTAATGGTCAAATG 59.856 38.462 0.00 0.00 33.08 2.32
4697 12359 6.462628 CCGATGATAGAGTGATCATGGCATAT 60.463 42.308 0.00 0.00 44.78 1.78
4812 12480 0.390124 CCCTGCGCAATGGCAATTAT 59.610 50.000 13.05 0.00 43.39 1.28
4814 12482 2.285024 ACCCTGCGCAATGGCAATT 61.285 52.632 22.01 3.53 43.39 2.32
5217 12885 2.519013 GTCCTCCTTCTTGGTTGCAAT 58.481 47.619 0.59 0.00 37.07 3.56
5250 12918 1.268794 CCAAATCGACAACAACCGCAA 60.269 47.619 0.00 0.00 0.00 4.85
5559 13227 3.470567 CGTCTCAAGGCGACGTGC 61.471 66.667 0.00 0.00 46.56 5.34
5592 13260 1.455217 CCTCCGGGTCGTCCACTAT 60.455 63.158 0.00 0.00 34.36 2.12
5829 13497 1.293498 CGAACCAGCTGTAGCCACT 59.707 57.895 13.81 0.00 43.38 4.00
5835 13503 2.089887 TTGTCCGCGAACCAGCTGTA 62.090 55.000 13.81 0.00 34.40 2.74
5933 13601 3.193903 TGTAGACATAGGTACTTGCGCAA 59.806 43.478 23.48 23.48 41.75 4.85
5990 13662 4.274214 CCATTGTACTAGTGCACATCCATG 59.726 45.833 21.04 13.19 0.00 3.66
5991 13663 4.080356 ACCATTGTACTAGTGCACATCCAT 60.080 41.667 21.04 1.21 0.00 3.41
6089 13762 8.941977 CGGGCATTTGTGCTATTAGTATATAAA 58.058 33.333 0.07 0.00 34.73 1.40
6090 13763 8.098286 ACGGGCATTTGTGCTATTAGTATATAA 58.902 33.333 0.07 0.00 34.73 0.98
6091 13764 7.547722 CACGGGCATTTGTGCTATTAGTATATA 59.452 37.037 0.07 0.00 34.73 0.86
6092 13765 6.371548 CACGGGCATTTGTGCTATTAGTATAT 59.628 38.462 0.07 0.00 34.73 0.86
6093 13766 5.699001 CACGGGCATTTGTGCTATTAGTATA 59.301 40.000 0.07 0.00 34.73 1.47
6094 13767 4.515191 CACGGGCATTTGTGCTATTAGTAT 59.485 41.667 0.07 0.00 34.73 2.12
6095 13768 3.874543 CACGGGCATTTGTGCTATTAGTA 59.125 43.478 0.07 0.00 34.73 1.82
6096 13769 2.682856 CACGGGCATTTGTGCTATTAGT 59.317 45.455 0.07 0.00 34.73 2.24
6097 13770 3.338818 CACGGGCATTTGTGCTATTAG 57.661 47.619 0.07 0.00 34.73 1.73
6138 13815 7.442969 TCTCACCAAATTCAGTTACACGTTAAT 59.557 33.333 0.00 0.00 0.00 1.40
6152 13829 6.042143 TCAAAAGCTGTTTCTCACCAAATTC 58.958 36.000 0.00 0.00 0.00 2.17
6193 13870 4.097589 TCCCTTTAAAGCGAGTAGTAGCTC 59.902 45.833 9.86 0.00 43.78 4.09
6347 14027 8.029522 GGAGTTAAATCTGAATTCCAAGGAAAC 58.970 37.037 5.52 4.33 37.69 2.78
6768 14749 6.745907 CCGTTGCCTAAAAAGAACTAAATAGC 59.254 38.462 0.00 0.00 0.00 2.97
6806 14787 1.000385 CCGTTGCCAGATGCTCAAAAA 60.000 47.619 0.00 0.00 42.00 1.94
6807 14788 0.597568 CCGTTGCCAGATGCTCAAAA 59.402 50.000 0.00 0.00 42.00 2.44
6808 14789 0.250684 TCCGTTGCCAGATGCTCAAA 60.251 50.000 0.00 0.00 42.00 2.69
6809 14790 0.035152 ATCCGTTGCCAGATGCTCAA 60.035 50.000 0.00 0.00 42.00 3.02
6810 14791 0.035152 AATCCGTTGCCAGATGCTCA 60.035 50.000 0.00 0.00 42.00 4.26
6811 14792 1.098050 AAATCCGTTGCCAGATGCTC 58.902 50.000 0.00 0.00 42.00 4.26
6812 14793 2.292267 CTAAATCCGTTGCCAGATGCT 58.708 47.619 0.00 0.00 42.00 3.79
6813 14794 1.268743 GCTAAATCCGTTGCCAGATGC 60.269 52.381 0.00 0.00 41.77 3.91
6814 14795 2.292267 AGCTAAATCCGTTGCCAGATG 58.708 47.619 0.00 0.00 0.00 2.90
6815 14796 2.717639 AGCTAAATCCGTTGCCAGAT 57.282 45.000 0.00 0.00 0.00 2.90
6816 14797 3.620427 TTAGCTAAATCCGTTGCCAGA 57.380 42.857 2.97 0.00 0.00 3.86
6817 14798 4.156008 AGTTTTAGCTAAATCCGTTGCCAG 59.844 41.667 19.27 0.00 0.00 4.85
6818 14799 4.076394 AGTTTTAGCTAAATCCGTTGCCA 58.924 39.130 19.27 0.00 0.00 4.92
6819 14800 4.155280 TCAGTTTTAGCTAAATCCGTTGCC 59.845 41.667 19.27 1.80 0.00 4.52
6820 14801 5.291293 TCAGTTTTAGCTAAATCCGTTGC 57.709 39.130 19.27 5.04 0.00 4.17
6821 14802 7.634817 CGTAATCAGTTTTAGCTAAATCCGTTG 59.365 37.037 19.27 12.53 0.00 4.10
6822 14803 7.332678 ACGTAATCAGTTTTAGCTAAATCCGTT 59.667 33.333 19.27 14.15 0.00 4.44
6823 14804 6.815142 ACGTAATCAGTTTTAGCTAAATCCGT 59.185 34.615 19.27 16.79 0.00 4.69
6824 14805 7.230466 ACGTAATCAGTTTTAGCTAAATCCG 57.770 36.000 19.27 16.26 0.00 4.18


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.