Multiple sequence alignment - TraesCS2B01G615100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G615100 chr2B 100.000 3181 0 0 1 3181 793351311 793348131 0.000000e+00 5875.0
1 TraesCS2B01G615100 chr2B 79.740 385 49 13 893 1268 791705334 791704970 5.270000e-63 252.0
2 TraesCS2B01G615100 chr2B 80.571 175 24 6 4 170 791706253 791706081 3.330000e-25 126.0
3 TraesCS2B01G615100 chr2B 90.323 62 4 2 1204 1264 793177489 793177429 2.630000e-11 80.5
4 TraesCS2B01G615100 chr2B 95.833 48 1 1 1211 1257 793446895 793446848 3.400000e-10 76.8
5 TraesCS2B01G615100 chr2D 94.284 1662 57 10 1360 2999 643775112 643776757 0.000000e+00 2508.0
6 TraesCS2B01G615100 chr2D 88.903 784 49 13 1 750 643770223 643771002 0.000000e+00 931.0
7 TraesCS2B01G615100 chr2D 91.087 561 34 8 813 1369 643771132 643771680 0.000000e+00 745.0
8 TraesCS2B01G615100 chr2D 93.785 177 8 3 3007 3181 643777044 643777219 2.430000e-66 263.0
9 TraesCS2B01G615100 chr2D 89.796 98 7 2 735 830 643771022 643771118 4.310000e-24 122.0
10 TraesCS2B01G615100 chr2D 88.235 68 6 2 1192 1258 643870472 643870538 2.630000e-11 80.5
11 TraesCS2B01G615100 chr2D 95.833 48 1 1 1211 1257 643468456 643468409 3.400000e-10 76.8
12 TraesCS2B01G615100 chr2D 95.833 48 1 1 1211 1257 643640543 643640590 3.400000e-10 76.8
13 TraesCS2B01G615100 chr2D 89.286 56 6 0 906 961 643788212 643788267 1.580000e-08 71.3
14 TraesCS2B01G615100 chr2D 97.368 38 1 0 906 943 643789790 643789827 7.370000e-07 65.8
15 TraesCS2B01G615100 chr2A 78.137 1331 214 48 1341 2642 768626731 768628013 0.000000e+00 774.0
16 TraesCS2B01G615100 chr2A 85.204 588 52 21 700 1285 768625931 768626485 3.560000e-159 571.0
17 TraesCS2B01G615100 chr2A 90.116 344 25 5 2702 3038 768629390 768629731 3.770000e-119 438.0
18 TraesCS2B01G615100 chr2A 81.699 459 55 14 175 613 768623102 768623551 3.900000e-94 355.0
19 TraesCS2B01G615100 chr2A 95.322 171 5 2 2 170 768622712 768622881 5.230000e-68 268.0
20 TraesCS2B01G615100 chr2A 84.659 176 14 6 186 360 768622931 768623094 2.540000e-36 163.0
21 TraesCS2B01G615100 chr2A 95.833 96 3 1 3087 3181 768631460 768631555 1.530000e-33 154.0
22 TraesCS2B01G615100 chr5D 100.000 43 0 0 1301 1343 217423866 217423908 2.630000e-11 80.5
23 TraesCS2B01G615100 chr3D 93.878 49 2 1 1211 1258 306087381 306087333 4.400000e-09 73.1
24 TraesCS2B01G615100 chr3B 92.308 39 3 0 1899 1937 807440046 807440008 4.430000e-04 56.5
25 TraesCS2B01G615100 chr3A 100.000 30 0 0 1899 1928 730656049 730656020 4.430000e-04 56.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G615100 chr2B 793348131 793351311 3180 True 5875.0 5875 100.000000 1 3181 1 chr2B.!!$R2 3180
1 TraesCS2B01G615100 chr2D 643770223 643777219 6996 False 913.8 2508 91.571000 1 3181 5 chr2D.!!$F3 3180
2 TraesCS2B01G615100 chr2A 768622712 768631555 8843 False 389.0 774 87.281429 2 3181 7 chr2A.!!$F1 3179

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
721 3293 0.033504 TCAGGGTGAAACAGAGACGC 59.966 55.0 0.0 0.0 39.98 5.19 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2207 8494 0.033504 ATTTATGCGGTCGATCGGCT 59.966 50.0 21.29 1.55 41.87 5.52 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
56 58 0.966920 ACCTTACTGGACGTCCACTG 59.033 55.000 33.23 25.59 42.01 3.66
81 83 1.615883 TGCGCCACCACACATTTTATT 59.384 42.857 4.18 0.00 0.00 1.40
184 246 3.386768 ACAACTGCGTACACAATCTCT 57.613 42.857 0.00 0.00 0.00 3.10
240 302 2.171237 CCAGCATATCCAAGTCAGGACA 59.829 50.000 1.84 0.00 41.30 4.02
241 303 3.181447 CCAGCATATCCAAGTCAGGACAT 60.181 47.826 1.84 0.00 41.30 3.06
258 324 4.594920 AGGACATTTGGTCTCTCTCTCAAA 59.405 41.667 0.00 0.00 46.16 2.69
474 748 7.479352 TTTCCACATGTTAAATCCACATCAT 57.521 32.000 0.00 0.00 32.25 2.45
497 771 9.904198 TCATAGATCATTAAAACACAGAATCCA 57.096 29.630 0.00 0.00 0.00 3.41
552 827 4.462508 TTCAGATCAGAGAGCGTTCAAT 57.537 40.909 1.01 0.00 0.00 2.57
565 840 2.609491 GCGTTCAATGAAAACCCTTCCC 60.609 50.000 0.00 0.00 0.00 3.97
631 910 4.568876 GCGGCGAACGGCAATACG 62.569 66.667 12.98 5.14 46.16 3.06
638 917 2.539547 GCGAACGGCAATACGACTACTA 60.540 50.000 0.00 0.00 42.87 1.82
639 918 3.286576 CGAACGGCAATACGACTACTAG 58.713 50.000 0.00 0.00 37.61 2.57
640 919 3.242543 CGAACGGCAATACGACTACTAGT 60.243 47.826 0.00 0.00 37.61 2.57
641 920 4.666237 GAACGGCAATACGACTACTAGTT 58.334 43.478 0.00 0.00 37.61 2.24
642 921 4.025015 ACGGCAATACGACTACTAGTTG 57.975 45.455 0.00 0.59 35.70 3.16
645 924 3.432782 GCAATACGACTACTAGTTGCGT 58.567 45.455 21.87 21.87 32.76 5.24
666 945 2.024590 GCGGGGTATTGTAGAGCGGT 62.025 60.000 0.00 0.00 0.00 5.68
704 983 6.407865 GGAGAAACAGAATCTGGATCTGATCA 60.408 42.308 19.88 0.00 45.74 2.92
710 3282 2.854736 TCTGGATCTGATCAGGGTGA 57.145 50.000 22.42 10.87 0.00 4.02
721 3293 0.033504 TCAGGGTGAAACAGAGACGC 59.966 55.000 0.00 0.00 39.98 5.19
744 3316 1.430464 CATCTGGGCTTTGGGGGATAT 59.570 52.381 0.00 0.00 0.00 1.63
750 3357 1.345415 GGCTTTGGGGGATATTGCATG 59.655 52.381 0.00 0.00 0.00 4.06
805 3412 0.685131 TTGCCATCAGCCCTTGGATG 60.685 55.000 0.82 0.00 40.92 3.51
822 3461 7.127801 CCCTTGGATGTATATTGGATGGATAGA 59.872 40.741 0.00 0.00 0.00 1.98
838 3477 6.879276 TGGATAGAATAGTTAGAGGACGTG 57.121 41.667 0.00 0.00 0.00 4.49
845 3484 2.430465 AGTTAGAGGACGTGCGACTAA 58.570 47.619 19.08 19.08 0.00 2.24
846 3485 2.816087 AGTTAGAGGACGTGCGACTAAA 59.184 45.455 22.41 10.74 0.00 1.85
848 3487 0.243095 AGAGGACGTGCGACTAAACC 59.757 55.000 0.00 0.00 0.00 3.27
849 3488 0.038892 GAGGACGTGCGACTAAACCA 60.039 55.000 0.00 0.00 0.00 3.67
851 3490 0.038892 GGACGTGCGACTAAACCAGA 60.039 55.000 0.00 0.00 0.00 3.86
852 3491 1.058404 GACGTGCGACTAAACCAGAC 58.942 55.000 0.00 0.00 0.00 3.51
855 3494 1.711206 GTGCGACTAAACCAGACTCC 58.289 55.000 0.00 0.00 0.00 3.85
856 3495 1.272769 GTGCGACTAAACCAGACTCCT 59.727 52.381 0.00 0.00 0.00 3.69
858 3497 1.544691 GCGACTAAACCAGACTCCTCA 59.455 52.381 0.00 0.00 0.00 3.86
859 3498 2.416162 GCGACTAAACCAGACTCCTCAG 60.416 54.545 0.00 0.00 0.00 3.35
860 3499 2.416162 CGACTAAACCAGACTCCTCAGC 60.416 54.545 0.00 0.00 0.00 4.26
864 3503 0.413832 AACCAGACTCCTCAGCCCTA 59.586 55.000 0.00 0.00 0.00 3.53
866 3505 1.337118 CCAGACTCCTCAGCCCTATC 58.663 60.000 0.00 0.00 0.00 2.08
867 3506 1.133199 CCAGACTCCTCAGCCCTATCT 60.133 57.143 0.00 0.00 0.00 1.98
868 3507 2.238521 CAGACTCCTCAGCCCTATCTC 58.761 57.143 0.00 0.00 0.00 2.75
870 3509 0.847373 ACTCCTCAGCCCTATCTCGA 59.153 55.000 0.00 0.00 0.00 4.04
967 3606 1.000771 TCCCTCACTCACTCCCTCG 60.001 63.158 0.00 0.00 0.00 4.63
1037 3676 2.203625 GGTGTTGGCCATGGTGGT 60.204 61.111 14.67 0.00 40.46 4.16
1038 3677 2.275380 GGTGTTGGCCATGGTGGTC 61.275 63.158 14.67 3.03 43.98 4.02
1039 3678 2.117206 TGTTGGCCATGGTGGTCC 59.883 61.111 14.67 6.38 42.76 4.46
1040 3679 2.440599 GTTGGCCATGGTGGTCCT 59.559 61.111 14.67 0.00 42.76 3.85
1045 3684 2.903357 CCATGGTGGTCCTCCTCG 59.097 66.667 11.28 2.44 31.35 4.63
1046 3685 2.187946 CATGGTGGTCCTCCTCGC 59.812 66.667 11.28 0.00 34.23 5.03
1111 3750 3.138930 ATCTCCATGCCGACCGACG 62.139 63.158 0.00 0.00 42.18 5.12
1166 3805 3.465403 CTGCCCCGACCTGGAGAG 61.465 72.222 0.00 0.00 42.00 3.20
1187 3826 4.539083 TGTGCGCGACAAGGTGGT 62.539 61.111 12.10 0.00 0.00 4.16
1295 3936 2.492484 CGTGCTCTTACTTACCACTCCT 59.508 50.000 0.00 0.00 0.00 3.69
1296 3937 3.427773 CGTGCTCTTACTTACCACTCCTC 60.428 52.174 0.00 0.00 0.00 3.71
1297 3938 3.764972 GTGCTCTTACTTACCACTCCTCT 59.235 47.826 0.00 0.00 0.00 3.69
1652 7930 3.909086 GAAGGACAGCAAGCGCCCT 62.909 63.158 2.29 0.00 39.83 5.19
1705 7983 2.089017 CACGCGATGCCAAGATCAA 58.911 52.632 15.93 0.00 0.00 2.57
1728 8006 0.752009 TCTCATCCGGGTCTTCGAGG 60.752 60.000 0.00 0.00 0.00 4.63
1729 8007 0.752009 CTCATCCGGGTCTTCGAGGA 60.752 60.000 0.00 0.00 37.17 3.71
1853 8131 3.555518 GTTCGTCAAGGCAATCAAAGAC 58.444 45.455 0.00 0.00 0.00 3.01
1941 8219 2.308690 AGTACTACGGCAATCTCCTCC 58.691 52.381 0.00 0.00 0.00 4.30
2018 8296 0.387565 TTTTTGTCGAAAGCTGGGCC 59.612 50.000 0.00 0.00 0.00 5.80
2033 8311 1.686325 GGGCCAAGGACGAGCATCTA 61.686 60.000 4.39 0.00 0.00 1.98
2057 8335 1.675641 GTTCCATGGGCACTTCGCT 60.676 57.895 13.02 0.00 41.91 4.93
2096 8374 0.967380 CAGATTTGCCTGTGGACCCC 60.967 60.000 0.00 0.00 0.00 4.95
2097 8375 2.035626 ATTTGCCTGTGGACCCCG 59.964 61.111 0.00 0.00 0.00 5.73
2099 8377 2.764637 ATTTGCCTGTGGACCCCGAC 62.765 60.000 0.00 0.00 0.00 4.79
2136 8414 2.032681 GCTTCAGGCCCAAGTCGT 59.967 61.111 12.56 0.00 34.27 4.34
2137 8415 1.600916 GCTTCAGGCCCAAGTCGTT 60.601 57.895 12.56 0.00 34.27 3.85
2138 8416 1.172812 GCTTCAGGCCCAAGTCGTTT 61.173 55.000 12.56 0.00 34.27 3.60
2192 8479 0.943359 CGGCTTGAGAGATCATCGGC 60.943 60.000 0.00 1.86 0.00 5.54
2194 8481 1.605202 GGCTTGAGAGATCATCGGCTC 60.605 57.143 0.00 4.19 0.00 4.70
2195 8482 1.068281 GCTTGAGAGATCATCGGCTCA 59.932 52.381 8.64 8.64 33.28 4.26
2196 8483 2.863312 GCTTGAGAGATCATCGGCTCAG 60.863 54.545 11.53 8.48 35.37 3.35
2231 8518 4.724036 GCCGATCGACCGCATAAATTAATC 60.724 45.833 18.66 0.00 0.00 1.75
2368 8670 1.227383 CCTGTGGGGCCTTGTATCC 59.773 63.158 0.84 0.00 0.00 2.59
2392 8694 6.419484 TCTCAGTTCAACAACTATTCCAGA 57.581 37.500 0.00 0.00 41.24 3.86
2537 8843 9.646427 GCTCATGGAGAAGTAAGTTATTATAGG 57.354 37.037 0.00 0.00 0.00 2.57
2682 10332 2.104451 TCCGTACTAGCCCTAGTCTCAG 59.896 54.545 11.01 2.86 44.58 3.35
2684 10334 3.395639 CGTACTAGCCCTAGTCTCAGAG 58.604 54.545 11.01 0.00 44.58 3.35
2689 10339 2.107366 AGCCCTAGTCTCAGAGAAAGC 58.893 52.381 0.20 1.25 0.00 3.51
2696 10346 2.490115 AGTCTCAGAGAAAGCGGTACTG 59.510 50.000 0.20 0.00 0.00 2.74
2700 10350 2.626266 TCAGAGAAAGCGGTACTGTTCA 59.374 45.455 3.10 0.00 0.00 3.18
2807 10458 3.730715 CGTTCCACATGCTTCAAACTTTC 59.269 43.478 0.00 0.00 0.00 2.62
2877 10534 6.777580 ACATTATTGGTCTTTTTCACCTGTCT 59.222 34.615 0.00 0.00 34.66 3.41
2888 10546 4.771114 TTCACCTGTCTTTTTCTCCTCA 57.229 40.909 0.00 0.00 0.00 3.86
3024 10982 6.588756 ACAAGCTATTTTGCATCATGTTTCTG 59.411 34.615 0.00 0.00 34.99 3.02
3175 12814 7.804614 TTTTAAATATGTTGATTGGACGCAC 57.195 32.000 0.00 0.00 0.00 5.34
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
81 83 1.825090 AAATTGCTGCACGGATCTCA 58.175 45.000 0.00 0.00 0.00 3.27
240 302 7.230027 AGTTCATTTTGAGAGAGAGACCAAAT 58.770 34.615 0.00 0.00 0.00 2.32
241 303 6.595682 AGTTCATTTTGAGAGAGAGACCAAA 58.404 36.000 0.00 0.00 0.00 3.28
430 704 8.798153 GTGGAAATATTTTTCATGTTCACGATC 58.202 33.333 10.27 0.00 42.55 3.69
485 759 4.070716 CTCTCAGCTTTGGATTCTGTGTT 58.929 43.478 0.00 0.00 0.00 3.32
497 771 5.494724 TCTTGTATGAATGCTCTCAGCTTT 58.505 37.500 0.00 0.00 42.97 3.51
498 772 5.095145 TCTTGTATGAATGCTCTCAGCTT 57.905 39.130 0.00 0.00 42.97 3.74
552 827 1.324383 GCGAAAGGGAAGGGTTTTCA 58.676 50.000 0.00 0.00 31.87 2.69
613 892 3.492545 GTATTGCCGTTCGCCGCA 61.493 61.111 0.00 0.00 36.24 5.69
617 896 0.569349 GTAGTCGTATTGCCGTTCGC 59.431 55.000 0.00 0.00 38.31 4.70
631 910 0.860618 CCGCGACGCAACTAGTAGTC 60.861 60.000 21.35 13.11 0.00 2.59
638 917 3.305177 AATACCCCGCGACGCAACT 62.305 57.895 21.35 1.00 0.00 3.16
639 918 2.816520 AATACCCCGCGACGCAAC 60.817 61.111 21.35 0.00 0.00 4.17
640 919 2.223200 TACAATACCCCGCGACGCAA 62.223 55.000 21.35 0.00 0.00 4.85
641 920 2.616786 CTACAATACCCCGCGACGCA 62.617 60.000 21.35 0.00 0.00 5.24
642 921 1.947642 CTACAATACCCCGCGACGC 60.948 63.158 8.23 10.49 0.00 5.19
645 924 1.737816 GCTCTACAATACCCCGCGA 59.262 57.895 8.23 0.00 0.00 5.87
666 945 3.517100 CTGTTTCTCCTTCTCCCTCATCA 59.483 47.826 0.00 0.00 0.00 3.07
704 983 0.034059 CAGCGTCTCTGTTTCACCCT 59.966 55.000 0.00 0.00 38.02 4.34
710 3282 1.436600 CAGATGCAGCGTCTCTGTTT 58.563 50.000 14.70 0.00 44.66 2.83
721 3293 2.056223 CCCCAAAGCCCAGATGCAG 61.056 63.158 0.00 0.00 0.00 4.41
744 3316 3.011818 CAGCTATCACAGTTCCATGCAA 58.988 45.455 0.00 0.00 0.00 4.08
750 3357 1.065854 ACCTGCAGCTATCACAGTTCC 60.066 52.381 8.66 0.00 0.00 3.62
789 3396 2.965671 ATACATCCAAGGGCTGATGG 57.034 50.000 0.00 5.08 42.09 3.51
822 3461 3.015327 AGTCGCACGTCCTCTAACTATT 58.985 45.455 0.00 0.00 0.00 1.73
838 3477 1.544691 TGAGGAGTCTGGTTTAGTCGC 59.455 52.381 0.00 0.00 0.00 5.19
845 3484 0.413832 TAGGGCTGAGGAGTCTGGTT 59.586 55.000 0.00 0.00 0.00 3.67
846 3485 0.639392 ATAGGGCTGAGGAGTCTGGT 59.361 55.000 0.00 0.00 0.00 4.00
848 3487 2.238521 GAGATAGGGCTGAGGAGTCTG 58.761 57.143 0.00 0.00 0.00 3.51
849 3488 1.202879 CGAGATAGGGCTGAGGAGTCT 60.203 57.143 0.00 0.00 0.00 3.24
851 3490 0.847373 TCGAGATAGGGCTGAGGAGT 59.153 55.000 0.00 0.00 0.00 3.85
852 3491 2.214376 ATCGAGATAGGGCTGAGGAG 57.786 55.000 0.00 0.00 0.00 3.69
855 3494 4.021632 TCAATCAATCGAGATAGGGCTGAG 60.022 45.833 0.00 0.00 0.00 3.35
856 3495 3.897505 TCAATCAATCGAGATAGGGCTGA 59.102 43.478 0.00 0.00 0.00 4.26
858 3497 3.900601 ACTCAATCAATCGAGATAGGGCT 59.099 43.478 0.00 0.00 33.33 5.19
859 3498 3.993081 CACTCAATCAATCGAGATAGGGC 59.007 47.826 0.00 0.00 33.33 5.19
860 3499 5.459536 TCACTCAATCAATCGAGATAGGG 57.540 43.478 0.00 0.00 33.33 3.53
864 3503 3.963374 TCCCTCACTCAATCAATCGAGAT 59.037 43.478 0.00 0.00 33.33 2.75
866 3505 3.131933 ACTCCCTCACTCAATCAATCGAG 59.868 47.826 0.00 0.00 35.30 4.04
867 3506 3.099905 ACTCCCTCACTCAATCAATCGA 58.900 45.455 0.00 0.00 0.00 3.59
868 3507 3.118992 TCACTCCCTCACTCAATCAATCG 60.119 47.826 0.00 0.00 0.00 3.34
870 3509 3.843027 ACTCACTCCCTCACTCAATCAAT 59.157 43.478 0.00 0.00 0.00 2.57
1080 3719 2.496817 GAGATGAACTCCGCCGCT 59.503 61.111 0.00 0.00 39.53 5.52
1111 3750 0.957395 TAGGAGTGGTCACCGACGTC 60.957 60.000 5.18 5.18 32.65 4.34
1156 3795 0.460987 CGCACAATCCTCTCCAGGTC 60.461 60.000 0.00 0.00 41.28 3.85
1166 3805 2.325082 ACCTTGTCGCGCACAATCC 61.325 57.895 20.39 0.00 44.32 3.01
1167 3806 1.154413 CACCTTGTCGCGCACAATC 60.154 57.895 20.39 2.45 44.32 2.67
1187 3826 3.787676 CGTTTCTGCGCGCATCCA 61.788 61.111 36.48 18.95 0.00 3.41
1431 7703 1.896465 GCTGGAGTAGAGGTGACTTGT 59.104 52.381 0.00 0.00 44.43 3.16
1586 7864 2.745308 CCCGGACATCATGAGGGCA 61.745 63.158 16.30 0.00 35.09 5.36
1728 8006 2.556287 CTTGTTGAAGCCGCGGTC 59.444 61.111 28.70 18.17 0.00 4.79
1729 8007 2.978010 CCTTGTTGAAGCCGCGGT 60.978 61.111 28.70 7.71 0.00 5.68
1775 8053 1.377987 GGTTGCCTTGCCGATGGTA 60.378 57.895 0.00 0.00 0.00 3.25
1853 8131 2.816746 CCCTGATCTGGGGCAATTG 58.183 57.895 26.29 0.00 43.45 2.32
1941 8219 0.609131 CCAAGCACACCCAACCCTAG 60.609 60.000 0.00 0.00 0.00 3.02
2018 8296 1.115467 ACCCTAGATGCTCGTCCTTG 58.885 55.000 0.00 0.00 0.00 3.61
2033 8311 2.863484 TGCCCATGGAACCACCCT 60.863 61.111 15.22 0.00 38.00 4.34
2057 8335 0.749091 CCATCTTCTTCATGGCGGCA 60.749 55.000 16.34 16.34 34.59 5.69
2166 8453 3.452786 CTCTCAAGCCGAGGCCGA 61.453 66.667 10.95 7.06 42.55 5.54
2190 8477 0.534652 GCTGGTGATCCATCTGAGCC 60.535 60.000 0.00 0.00 43.43 4.70
2192 8479 0.249784 CGGCTGGTGATCCATCTGAG 60.250 60.000 0.00 0.00 43.43 3.35
2194 8481 0.395686 ATCGGCTGGTGATCCATCTG 59.604 55.000 0.00 0.00 43.43 2.90
2195 8482 0.683973 GATCGGCTGGTGATCCATCT 59.316 55.000 0.00 0.00 43.43 2.90
2196 8483 0.668706 CGATCGGCTGGTGATCCATC 60.669 60.000 7.38 0.00 43.43 3.51
2207 8494 0.033504 ATTTATGCGGTCGATCGGCT 59.966 50.000 21.29 1.55 41.87 5.52
2211 8498 5.107104 TGCAGATTAATTTATGCGGTCGATC 60.107 40.000 13.32 0.00 41.58 3.69
2231 8518 4.794439 TGCGGTCGACGGATGCAG 62.794 66.667 25.40 4.73 44.51 4.41
2368 8670 6.367422 GTCTGGAATAGTTGTTGAACTGAGAG 59.633 42.308 0.00 0.00 42.66 3.20
2556 8862 8.840321 TCATTGCCTTTGATTAGCTTATTACTC 58.160 33.333 0.00 0.00 0.00 2.59
2557 8863 8.752005 TCATTGCCTTTGATTAGCTTATTACT 57.248 30.769 0.00 0.00 0.00 2.24
2558 8864 8.840321 TCTCATTGCCTTTGATTAGCTTATTAC 58.160 33.333 0.00 0.00 0.00 1.89
2561 8867 7.228308 GTCTCTCATTGCCTTTGATTAGCTTAT 59.772 37.037 0.00 0.00 0.00 1.73
2682 10332 6.979238 AGTATTATGAACAGTACCGCTTTCTC 59.021 38.462 0.00 0.00 0.00 2.87
2684 10334 7.535489 AAGTATTATGAACAGTACCGCTTTC 57.465 36.000 0.00 0.00 0.00 2.62
2745 10396 8.175069 ACAATTGTTGCGATACTATACTTGTTG 58.825 33.333 4.92 0.00 0.00 3.33
2748 10399 7.905126 TGACAATTGTTGCGATACTATACTTG 58.095 34.615 13.36 0.00 0.00 3.16
2807 10458 1.964373 CCAACTGAAACCCGACCCG 60.964 63.158 0.00 0.00 0.00 5.28
2845 10502 8.241367 GTGAAAAAGACCAATAATGTTATCCGT 58.759 33.333 0.00 0.00 0.00 4.69
2877 10534 6.419791 TGGAACTAGTTTGTGAGGAGAAAAA 58.580 36.000 10.02 0.00 0.00 1.94
2888 10546 9.920946 ACATGGATAATAATGGAACTAGTTTGT 57.079 29.630 10.02 1.92 0.00 2.83
2999 10678 6.588756 CAGAAACATGATGCAAAATAGCTTGT 59.411 34.615 0.00 0.00 34.99 3.16
3024 10982 5.240844 AGTCTACCATGCAAAAACACTAACC 59.759 40.000 0.00 0.00 0.00 2.85
3067 11025 2.369257 AATGGGCGAGCGATCACGAT 62.369 55.000 0.00 0.00 42.66 3.73


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.