Multiple sequence alignment - TraesCS2B01G614200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G614200 chr2B 100.000 2362 0 0 828 3189 793165770 793163409 0.000000e+00 4362.0
1 TraesCS2B01G614200 chr2B 100.000 595 0 0 1 595 793166597 793166003 0.000000e+00 1099.0
2 TraesCS2B01G614200 chr7B 87.687 2209 218 33 998 3185 673518792 673520967 0.000000e+00 2523.0
3 TraesCS2B01G614200 chr7B 83.265 490 63 14 1 478 673513258 673513740 1.760000e-117 433.0
4 TraesCS2B01G614200 chr7B 82.278 237 36 5 29 263 655574890 655574658 1.940000e-47 200.0
5 TraesCS2B01G614200 chr4B 86.939 1715 193 19 999 2690 127723917 127722211 0.000000e+00 1897.0
6 TraesCS2B01G614200 chr4B 89.451 237 25 0 42 278 127725100 127724864 1.860000e-77 300.0
7 TraesCS2B01G614200 chr4B 86.512 215 28 1 33 246 626001850 626001636 5.320000e-58 235.0
8 TraesCS2B01G614200 chr5A 86.764 1715 195 20 999 2690 603383065 603381360 0.000000e+00 1881.0
9 TraesCS2B01G614200 chr5A 89.105 257 28 0 42 298 603383943 603383687 1.430000e-83 320.0
10 TraesCS2B01G614200 chr5A 74.579 535 104 25 1853 2366 414011546 414012069 4.170000e-49 206.0
11 TraesCS2B01G614200 chr5A 84.956 113 17 0 2450 2562 414012177 414012289 7.230000e-22 115.0
12 TraesCS2B01G614200 chr5A 95.349 43 2 0 2827 2869 414012474 414012516 5.710000e-08 69.4
13 TraesCS2B01G614200 chr6B 82.270 2211 321 46 1001 3188 471170808 471168646 0.000000e+00 1845.0
14 TraesCS2B01G614200 chr6A 82.038 2188 323 53 1028 3188 100260649 100258505 0.000000e+00 1799.0
15 TraesCS2B01G614200 chr1A 81.793 2208 334 45 1001 3188 530707107 530704948 0.000000e+00 1788.0
16 TraesCS2B01G614200 chrUn 85.342 1303 162 22 1410 2690 391667332 391668627 0.000000e+00 1321.0
17 TraesCS2B01G614200 chr7A 86.977 215 27 1 33 246 597641099 597640885 1.140000e-59 241.0
18 TraesCS2B01G614200 chr4A 86.047 215 29 1 33 246 476149567 476149781 2.470000e-56 230.0
19 TraesCS2B01G614200 chr2A 80.124 161 27 2 1875 2030 705788211 705788371 7.230000e-22 115.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G614200 chr2B 793163409 793166597 3188 True 2730.5 4362 100.0000 1 3189 2 chr2B.!!$R1 3188
1 TraesCS2B01G614200 chr7B 673518792 673520967 2175 False 2523.0 2523 87.6870 998 3185 1 chr7B.!!$F2 2187
2 TraesCS2B01G614200 chr4B 127722211 127725100 2889 True 1098.5 1897 88.1950 42 2690 2 chr4B.!!$R2 2648
3 TraesCS2B01G614200 chr5A 603381360 603383943 2583 True 1100.5 1881 87.9345 42 2690 2 chr5A.!!$R1 2648
4 TraesCS2B01G614200 chr6B 471168646 471170808 2162 True 1845.0 1845 82.2700 1001 3188 1 chr6B.!!$R1 2187
5 TraesCS2B01G614200 chr6A 100258505 100260649 2144 True 1799.0 1799 82.0380 1028 3188 1 chr6A.!!$R1 2160
6 TraesCS2B01G614200 chr1A 530704948 530707107 2159 True 1788.0 1788 81.7930 1001 3188 1 chr1A.!!$R1 2187
7 TraesCS2B01G614200 chrUn 391667332 391668627 1295 False 1321.0 1321 85.3420 1410 2690 1 chrUn.!!$F1 1280

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
518 836 0.035152 TGCACCTACATCAAGCCAGG 60.035 55.0 0.0 0.0 0.0 4.45 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2372 2761 0.951558 GATGTGTGTTGGGTGTGGAC 59.048 55.0 0.0 0.0 0.0 4.02 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 2.747686 ACATCCGCCAGAACCGTT 59.252 55.556 0.00 0.00 0.00 4.44
18 19 1.375523 ACATCCGCCAGAACCGTTC 60.376 57.895 2.81 2.81 0.00 3.95
19 20 1.079127 CATCCGCCAGAACCGTTCT 60.079 57.895 8.03 8.03 41.70 3.01
20 21 0.673644 CATCCGCCAGAACCGTTCTT 60.674 55.000 11.24 0.00 38.11 2.52
21 22 0.036306 ATCCGCCAGAACCGTTCTTT 59.964 50.000 11.24 0.00 38.11 2.52
22 23 0.179040 TCCGCCAGAACCGTTCTTTT 60.179 50.000 11.24 0.00 38.11 2.27
23 24 0.237498 CCGCCAGAACCGTTCTTTTC 59.763 55.000 11.24 3.13 38.11 2.29
24 25 0.237498 CGCCAGAACCGTTCTTTTCC 59.763 55.000 11.24 0.11 38.11 3.13
25 26 1.605753 GCCAGAACCGTTCTTTTCCT 58.394 50.000 11.24 0.00 38.11 3.36
26 27 1.266989 GCCAGAACCGTTCTTTTCCTG 59.733 52.381 11.24 0.41 38.11 3.86
27 28 1.266989 CCAGAACCGTTCTTTTCCTGC 59.733 52.381 11.24 0.00 38.11 4.85
28 29 2.222027 CAGAACCGTTCTTTTCCTGCT 58.778 47.619 11.24 0.00 38.11 4.24
29 30 2.618709 CAGAACCGTTCTTTTCCTGCTT 59.381 45.455 11.24 0.00 38.11 3.91
30 31 3.066760 CAGAACCGTTCTTTTCCTGCTTT 59.933 43.478 11.24 0.00 38.11 3.51
31 32 3.066760 AGAACCGTTCTTTTCCTGCTTTG 59.933 43.478 8.03 0.00 36.36 2.77
32 33 1.681264 ACCGTTCTTTTCCTGCTTTGG 59.319 47.619 0.00 0.00 0.00 3.28
33 34 1.681264 CCGTTCTTTTCCTGCTTTGGT 59.319 47.619 0.00 0.00 0.00 3.67
34 35 2.100749 CCGTTCTTTTCCTGCTTTGGTT 59.899 45.455 0.00 0.00 0.00 3.67
35 36 3.372060 CGTTCTTTTCCTGCTTTGGTTC 58.628 45.455 0.00 0.00 0.00 3.62
36 37 3.181491 CGTTCTTTTCCTGCTTTGGTTCA 60.181 43.478 0.00 0.00 0.00 3.18
37 38 4.499696 CGTTCTTTTCCTGCTTTGGTTCAT 60.500 41.667 0.00 0.00 0.00 2.57
38 39 4.853924 TCTTTTCCTGCTTTGGTTCATC 57.146 40.909 0.00 0.00 0.00 2.92
39 40 3.253188 TCTTTTCCTGCTTTGGTTCATCG 59.747 43.478 0.00 0.00 0.00 3.84
40 41 2.270352 TTCCTGCTTTGGTTCATCGT 57.730 45.000 0.00 0.00 0.00 3.73
47 48 3.380004 TGCTTTGGTTCATCGTTCAGTTT 59.620 39.130 0.00 0.00 0.00 2.66
52 53 5.766150 TGGTTCATCGTTCAGTTTTGAAT 57.234 34.783 0.00 0.00 44.62 2.57
114 115 2.355756 GGACCAGTACGCGTTCTACATA 59.644 50.000 20.78 0.00 0.00 2.29
116 117 3.762779 ACCAGTACGCGTTCTACATAAC 58.237 45.455 20.78 6.76 0.00 1.89
117 118 3.441572 ACCAGTACGCGTTCTACATAACT 59.558 43.478 20.78 9.47 0.00 2.24
120 121 1.636988 ACGCGTTCTACATAACTGGC 58.363 50.000 5.58 0.00 0.00 4.85
141 142 2.019984 GTTGGCATCAACCTCCTCATC 58.980 52.381 0.00 0.00 45.50 2.92
183 184 1.261938 ACGTCATGTTCGGGATGGGA 61.262 55.000 14.74 0.00 0.00 4.37
195 196 4.108299 ATGGGACGCGCCATGGAA 62.108 61.111 18.40 0.39 38.95 3.53
222 223 1.432270 GCATCGCAGCTAGGAACACC 61.432 60.000 0.00 0.00 0.00 4.16
231 232 4.063689 CAGCTAGGAACACCATGATGATC 58.936 47.826 0.00 0.00 0.00 2.92
234 235 4.444022 GCTAGGAACACCATGATGATCTGT 60.444 45.833 0.00 0.00 0.00 3.41
235 236 4.581309 AGGAACACCATGATGATCTGTT 57.419 40.909 0.00 0.00 0.00 3.16
246 247 5.494632 TGATGATCTGTTTGCTAATGCTG 57.505 39.130 0.00 0.00 40.48 4.41
252 253 3.058983 TCTGTTTGCTAATGCTGTTCGTG 60.059 43.478 0.00 0.00 40.48 4.35
253 254 2.031245 TGTTTGCTAATGCTGTTCGTGG 60.031 45.455 0.00 0.00 40.48 4.94
259 260 0.311790 AATGCTGTTCGTGGTGCTTG 59.688 50.000 0.00 0.00 0.00 4.01
261 262 2.639286 CTGTTCGTGGTGCTTGCC 59.361 61.111 0.00 0.00 0.00 4.52
266 267 3.673484 CGTGGTGCTTGCCAAGGG 61.673 66.667 6.57 0.00 40.68 3.95
267 268 2.203480 GTGGTGCTTGCCAAGGGA 60.203 61.111 6.57 0.00 40.68 4.20
295 296 0.960861 GCAGTAAAGACCAGGGTGGC 60.961 60.000 0.00 0.00 42.67 5.01
298 299 2.521451 TAAAGACCAGGGTGGCGCA 61.521 57.895 10.83 0.00 42.67 6.09
299 300 2.463589 TAAAGACCAGGGTGGCGCAG 62.464 60.000 10.83 0.00 42.67 5.18
314 315 2.729378 GCAGCAATGAAGCGGAAAC 58.271 52.632 0.00 0.00 40.15 2.78
315 316 0.039256 GCAGCAATGAAGCGGAAACA 60.039 50.000 0.00 0.00 40.15 2.83
316 317 1.973138 CAGCAATGAAGCGGAAACAG 58.027 50.000 0.00 0.00 40.15 3.16
317 318 0.242017 AGCAATGAAGCGGAAACAGC 59.758 50.000 0.00 0.00 40.15 4.40
318 319 0.733909 GCAATGAAGCGGAAACAGCC 60.734 55.000 0.00 0.00 34.64 4.85
319 320 0.109132 CAATGAAGCGGAAACAGCCC 60.109 55.000 0.00 0.00 34.64 5.19
323 324 1.982073 GAAGCGGAAACAGCCCGATG 61.982 60.000 5.69 0.00 45.83 3.84
324 325 2.463589 AAGCGGAAACAGCCCGATGA 62.464 55.000 5.69 0.00 45.83 2.92
327 328 2.408333 GGAAACAGCCCGATGATGG 58.592 57.895 0.00 0.00 0.00 3.51
328 329 0.107214 GGAAACAGCCCGATGATGGA 60.107 55.000 0.00 0.00 0.00 3.41
330 331 2.301346 GAAACAGCCCGATGATGGATT 58.699 47.619 0.00 0.00 0.00 3.01
332 333 2.550830 ACAGCCCGATGATGGATTAC 57.449 50.000 0.00 0.00 0.00 1.89
333 334 1.768275 ACAGCCCGATGATGGATTACA 59.232 47.619 0.00 0.00 0.00 2.41
336 337 3.003689 CAGCCCGATGATGGATTACAAAC 59.996 47.826 0.00 0.00 0.00 2.93
337 338 2.293399 GCCCGATGATGGATTACAAACC 59.707 50.000 0.00 0.00 0.00 3.27
338 339 2.884639 CCCGATGATGGATTACAAACCC 59.115 50.000 0.00 0.00 0.00 4.11
339 340 2.884639 CCGATGATGGATTACAAACCCC 59.115 50.000 0.00 0.00 0.00 4.95
340 341 2.884639 CGATGATGGATTACAAACCCCC 59.115 50.000 0.00 0.00 0.00 5.40
342 343 4.202419 CGATGATGGATTACAAACCCCCTA 60.202 45.833 0.00 0.00 0.00 3.53
343 344 4.513406 TGATGGATTACAAACCCCCTAC 57.487 45.455 0.00 0.00 0.00 3.18
344 345 3.203487 TGATGGATTACAAACCCCCTACC 59.797 47.826 0.00 0.00 0.00 3.18
345 346 1.924552 TGGATTACAAACCCCCTACCC 59.075 52.381 0.00 0.00 0.00 3.69
346 347 2.211532 GGATTACAAACCCCCTACCCT 58.788 52.381 0.00 0.00 0.00 4.34
347 348 2.092049 GGATTACAAACCCCCTACCCTG 60.092 54.545 0.00 0.00 0.00 4.45
348 349 2.436964 TTACAAACCCCCTACCCTGA 57.563 50.000 0.00 0.00 0.00 3.86
349 350 2.672703 TACAAACCCCCTACCCTGAT 57.327 50.000 0.00 0.00 0.00 2.90
350 351 1.768265 ACAAACCCCCTACCCTGATT 58.232 50.000 0.00 0.00 0.00 2.57
352 353 3.270812 ACAAACCCCCTACCCTGATTTA 58.729 45.455 0.00 0.00 0.00 1.40
353 354 3.862309 ACAAACCCCCTACCCTGATTTAT 59.138 43.478 0.00 0.00 0.00 1.40
354 355 4.215109 CAAACCCCCTACCCTGATTTATG 58.785 47.826 0.00 0.00 0.00 1.90
355 356 3.160575 ACCCCCTACCCTGATTTATGT 57.839 47.619 0.00 0.00 0.00 2.29
356 357 3.481035 ACCCCCTACCCTGATTTATGTT 58.519 45.455 0.00 0.00 0.00 2.71
358 359 4.215109 CCCCCTACCCTGATTTATGTTTG 58.785 47.826 0.00 0.00 0.00 2.93
359 360 4.215109 CCCCTACCCTGATTTATGTTTGG 58.785 47.826 0.00 0.00 0.00 3.28
360 361 4.325816 CCCCTACCCTGATTTATGTTTGGT 60.326 45.833 0.00 0.00 0.00 3.67
361 362 5.103855 CCCCTACCCTGATTTATGTTTGGTA 60.104 44.000 0.00 0.00 0.00 3.25
362 363 6.428295 CCCTACCCTGATTTATGTTTGGTAA 58.572 40.000 0.00 0.00 0.00 2.85
364 365 7.014230 CCCTACCCTGATTTATGTTTGGTAATG 59.986 40.741 0.00 0.00 0.00 1.90
365 366 6.220726 ACCCTGATTTATGTTTGGTAATGC 57.779 37.500 0.00 0.00 0.00 3.56
366 367 5.957774 ACCCTGATTTATGTTTGGTAATGCT 59.042 36.000 0.00 0.00 0.00 3.79
367 368 6.127366 ACCCTGATTTATGTTTGGTAATGCTG 60.127 38.462 0.00 0.00 0.00 4.41
370 371 7.818930 CCTGATTTATGTTTGGTAATGCTGTTT 59.181 33.333 0.00 0.00 0.00 2.83
371 372 8.531622 TGATTTATGTTTGGTAATGCTGTTTG 57.468 30.769 0.00 0.00 0.00 2.93
372 373 8.147058 TGATTTATGTTTGGTAATGCTGTTTGT 58.853 29.630 0.00 0.00 0.00 2.83
373 374 9.632807 GATTTATGTTTGGTAATGCTGTTTGTA 57.367 29.630 0.00 0.00 0.00 2.41
374 375 9.638239 ATTTATGTTTGGTAATGCTGTTTGTAG 57.362 29.630 0.00 0.00 0.00 2.74
375 376 6.648879 ATGTTTGGTAATGCTGTTTGTAGT 57.351 33.333 0.00 0.00 0.00 2.73
376 377 7.753309 ATGTTTGGTAATGCTGTTTGTAGTA 57.247 32.000 0.00 0.00 0.00 1.82
377 378 6.961576 TGTTTGGTAATGCTGTTTGTAGTAC 58.038 36.000 0.00 0.00 32.48 2.73
378 379 5.849357 TTGGTAATGCTGTTTGTAGTACG 57.151 39.130 0.00 0.00 33.70 3.67
379 380 4.885413 TGGTAATGCTGTTTGTAGTACGT 58.115 39.130 0.00 0.00 33.70 3.57
380 381 6.023357 TGGTAATGCTGTTTGTAGTACGTA 57.977 37.500 0.00 0.00 33.70 3.57
381 382 6.632909 TGGTAATGCTGTTTGTAGTACGTAT 58.367 36.000 0.00 0.00 33.70 3.06
382 383 6.532302 TGGTAATGCTGTTTGTAGTACGTATG 59.468 38.462 0.00 0.00 33.70 2.39
383 384 6.753279 GGTAATGCTGTTTGTAGTACGTATGA 59.247 38.462 0.00 0.00 33.70 2.15
384 385 7.276218 GGTAATGCTGTTTGTAGTACGTATGAA 59.724 37.037 0.00 0.00 33.70 2.57
392 641 7.094075 TGTTTGTAGTACGTATGAATCCAGAGT 60.094 37.037 0.00 0.00 0.00 3.24
397 646 1.202417 CGTATGAATCCAGAGTGCGGT 60.202 52.381 0.00 0.00 0.00 5.68
399 648 0.107508 ATGAATCCAGAGTGCGGTGG 60.108 55.000 0.00 0.00 34.87 4.61
400 649 2.045926 AATCCAGAGTGCGGTGGC 60.046 61.111 0.00 0.00 40.52 5.01
403 652 4.063967 CCAGAGTGCGGTGGCGTA 62.064 66.667 0.00 0.00 44.10 4.42
405 654 4.065281 AGAGTGCGGTGGCGTACC 62.065 66.667 0.00 1.40 46.56 3.34
460 778 6.996282 TCCTATTAGCTAATGTAAACCTTGGC 59.004 38.462 25.99 0.00 0.00 4.52
471 789 2.030490 AACCTTGGCGACGTGTACCA 62.030 55.000 0.00 0.00 0.00 3.25
473 791 1.300311 CTTGGCGACGTGTACCACA 60.300 57.895 0.00 0.00 33.40 4.17
482 800 2.980562 GTGTACCACACGCAACAGA 58.019 52.632 0.00 0.00 39.53 3.41
483 801 0.580104 GTGTACCACACGCAACAGAC 59.420 55.000 0.00 0.00 39.53 3.51
484 802 0.531090 TGTACCACACGCAACAGACC 60.531 55.000 0.00 0.00 0.00 3.85
485 803 0.249741 GTACCACACGCAACAGACCT 60.250 55.000 0.00 0.00 0.00 3.85
486 804 0.249699 TACCACACGCAACAGACCTG 60.250 55.000 0.00 0.00 0.00 4.00
487 805 2.253758 CCACACGCAACAGACCTGG 61.254 63.158 1.82 0.00 34.19 4.45
488 806 1.227527 CACACGCAACAGACCTGGA 60.228 57.895 0.00 0.00 34.19 3.86
489 807 1.227556 ACACGCAACAGACCTGGAC 60.228 57.895 0.00 0.00 34.19 4.02
490 808 2.029073 ACGCAACAGACCTGGACG 59.971 61.111 0.00 4.83 34.19 4.79
491 809 2.338620 CGCAACAGACCTGGACGA 59.661 61.111 0.00 0.00 34.19 4.20
492 810 1.079819 CGCAACAGACCTGGACGAT 60.080 57.895 0.00 0.00 34.19 3.73
493 811 0.670546 CGCAACAGACCTGGACGATT 60.671 55.000 0.00 0.00 34.19 3.34
494 812 0.798776 GCAACAGACCTGGACGATTG 59.201 55.000 0.00 5.92 34.19 2.67
495 813 1.878102 GCAACAGACCTGGACGATTGT 60.878 52.381 0.00 0.00 34.19 2.71
496 814 2.494059 CAACAGACCTGGACGATTGTT 58.506 47.619 0.00 0.00 34.19 2.83
497 815 2.878406 CAACAGACCTGGACGATTGTTT 59.122 45.455 0.00 0.00 34.19 2.83
498 816 2.767505 ACAGACCTGGACGATTGTTTC 58.232 47.619 0.00 0.00 34.19 2.78
499 817 2.368875 ACAGACCTGGACGATTGTTTCT 59.631 45.455 0.00 0.00 34.19 2.52
500 818 2.738846 CAGACCTGGACGATTGTTTCTG 59.261 50.000 0.00 0.00 0.00 3.02
501 819 1.464997 GACCTGGACGATTGTTTCTGC 59.535 52.381 0.00 0.00 0.00 4.26
502 820 1.202758 ACCTGGACGATTGTTTCTGCA 60.203 47.619 0.00 0.00 0.00 4.41
503 821 1.197721 CCTGGACGATTGTTTCTGCAC 59.802 52.381 0.00 0.00 0.00 4.57
504 822 1.197721 CTGGACGATTGTTTCTGCACC 59.802 52.381 0.00 0.00 0.00 5.01
505 823 1.202758 TGGACGATTGTTTCTGCACCT 60.203 47.619 0.00 0.00 0.00 4.00
506 824 2.037902 TGGACGATTGTTTCTGCACCTA 59.962 45.455 0.00 0.00 0.00 3.08
507 825 2.415512 GGACGATTGTTTCTGCACCTAC 59.584 50.000 0.00 0.00 0.00 3.18
508 826 3.064207 GACGATTGTTTCTGCACCTACA 58.936 45.455 0.00 0.00 0.00 2.74
509 827 3.674997 ACGATTGTTTCTGCACCTACAT 58.325 40.909 0.00 0.00 0.00 2.29
510 828 3.684788 ACGATTGTTTCTGCACCTACATC 59.315 43.478 0.00 0.00 0.00 3.06
511 829 3.684305 CGATTGTTTCTGCACCTACATCA 59.316 43.478 0.00 0.00 0.00 3.07
512 830 4.154015 CGATTGTTTCTGCACCTACATCAA 59.846 41.667 0.00 0.00 0.00 2.57
513 831 5.633830 ATTGTTTCTGCACCTACATCAAG 57.366 39.130 0.00 0.00 0.00 3.02
514 832 2.813754 TGTTTCTGCACCTACATCAAGC 59.186 45.455 0.00 0.00 0.00 4.01
515 833 2.113860 TTCTGCACCTACATCAAGCC 57.886 50.000 0.00 0.00 0.00 4.35
516 834 0.983467 TCTGCACCTACATCAAGCCA 59.017 50.000 0.00 0.00 0.00 4.75
517 835 1.065926 TCTGCACCTACATCAAGCCAG 60.066 52.381 0.00 0.00 0.00 4.85
518 836 0.035152 TGCACCTACATCAAGCCAGG 60.035 55.000 0.00 0.00 0.00 4.45
519 837 1.379642 GCACCTACATCAAGCCAGGC 61.380 60.000 1.84 1.84 0.00 4.85
520 838 0.035152 CACCTACATCAAGCCAGGCA 60.035 55.000 15.80 0.00 0.00 4.75
534 852 3.054139 AGCCAGGCAGAGACATAAATTGA 60.054 43.478 15.80 0.00 0.00 2.57
535 853 3.887716 GCCAGGCAGAGACATAAATTGAT 59.112 43.478 6.55 0.00 0.00 2.57
537 855 5.709164 GCCAGGCAGAGACATAAATTGATAT 59.291 40.000 6.55 0.00 0.00 1.63
539 857 6.349115 CCAGGCAGAGACATAAATTGATATGC 60.349 42.308 0.00 0.00 36.87 3.14
540 858 6.430308 CAGGCAGAGACATAAATTGATATGCT 59.570 38.462 0.00 0.00 36.87 3.79
554 872 1.075542 TATGCTCGCACGGTCAAAAG 58.924 50.000 0.00 0.00 0.00 2.27
555 873 2.127232 GCTCGCACGGTCAAAAGC 60.127 61.111 0.00 0.00 0.00 3.51
562 880 4.364817 CGGTCAAAAGCGTACCCA 57.635 55.556 0.00 0.00 41.36 4.51
564 882 0.236449 CGGTCAAAAGCGTACCCAAC 59.764 55.000 0.00 0.00 41.36 3.77
565 883 1.310904 GGTCAAAAGCGTACCCAACA 58.689 50.000 0.00 0.00 0.00 3.33
566 884 1.265905 GGTCAAAAGCGTACCCAACAG 59.734 52.381 0.00 0.00 0.00 3.16
567 885 0.948678 TCAAAAGCGTACCCAACAGC 59.051 50.000 0.00 0.00 0.00 4.40
569 887 1.512156 AAAAGCGTACCCAACAGCGG 61.512 55.000 0.00 0.00 34.28 5.52
570 888 2.669777 AAAGCGTACCCAACAGCGGT 62.670 55.000 0.00 0.00 37.40 5.68
573 891 2.314647 CGTACCCAACAGCGGTGTG 61.315 63.158 22.63 14.71 36.84 3.82
583 901 4.000557 GCGGTGTGCGTGTGTCAG 62.001 66.667 0.00 0.00 0.00 3.51
584 902 2.584970 CGGTGTGCGTGTGTCAGT 60.585 61.111 0.00 0.00 0.00 3.41
585 903 2.171079 CGGTGTGCGTGTGTCAGTT 61.171 57.895 0.00 0.00 0.00 3.16
586 904 1.351707 GGTGTGCGTGTGTCAGTTG 59.648 57.895 0.00 0.00 0.00 3.16
587 905 1.366111 GGTGTGCGTGTGTCAGTTGT 61.366 55.000 0.00 0.00 0.00 3.32
588 906 0.247655 GTGTGCGTGTGTCAGTTGTG 60.248 55.000 0.00 0.00 0.00 3.33
589 907 0.390472 TGTGCGTGTGTCAGTTGTGA 60.390 50.000 0.00 0.00 0.00 3.58
886 1205 0.681733 ACAGCGTGGTGAGTTCTGAT 59.318 50.000 6.00 0.00 0.00 2.90
897 1218 4.431809 GTGAGTTCTGATCCACATCTCAG 58.568 47.826 0.00 0.00 40.20 3.35
899 1220 3.448934 AGTTCTGATCCACATCTCAGGT 58.551 45.455 0.00 0.00 39.48 4.00
902 1223 0.461548 TGATCCACATCTCAGGTCGC 59.538 55.000 0.00 0.00 0.00 5.19
907 1228 4.147449 CATCTCAGGTCGCCGGCA 62.147 66.667 28.98 11.20 0.00 5.69
908 1229 4.148825 ATCTCAGGTCGCCGGCAC 62.149 66.667 28.98 22.29 0.00 5.01
919 1240 0.109365 CGCCGGCACATCAATCAAAA 60.109 50.000 28.98 0.00 0.00 2.44
921 1242 2.195922 GCCGGCACATCAATCAAAATC 58.804 47.619 24.80 0.00 0.00 2.17
931 1252 7.148474 GCACATCAATCAAAATCTTGCTGAAAT 60.148 33.333 0.00 0.00 31.73 2.17
933 1254 9.362539 ACATCAATCAAAATCTTGCTGAAATAC 57.637 29.630 0.00 0.00 31.73 1.89
934 1255 9.582431 CATCAATCAAAATCTTGCTGAAATACT 57.418 29.630 0.00 0.00 31.73 2.12
935 1256 9.798994 ATCAATCAAAATCTTGCTGAAATACTC 57.201 29.630 0.00 0.00 31.73 2.59
936 1257 8.795513 TCAATCAAAATCTTGCTGAAATACTCA 58.204 29.630 0.00 0.00 32.14 3.41
937 1258 8.857216 CAATCAAAATCTTGCTGAAATACTCAC 58.143 33.333 0.00 0.00 32.14 3.51
938 1259 6.913170 TCAAAATCTTGCTGAAATACTCACC 58.087 36.000 0.00 0.00 32.14 4.02
939 1260 5.904362 AAATCTTGCTGAAATACTCACCC 57.096 39.130 0.00 0.00 0.00 4.61
940 1261 4.851639 ATCTTGCTGAAATACTCACCCT 57.148 40.909 0.00 0.00 0.00 4.34
941 1262 4.640771 TCTTGCTGAAATACTCACCCTT 57.359 40.909 0.00 0.00 0.00 3.95
942 1263 4.579869 TCTTGCTGAAATACTCACCCTTC 58.420 43.478 0.00 0.00 0.00 3.46
943 1264 3.350219 TGCTGAAATACTCACCCTTCC 57.650 47.619 0.00 0.00 0.00 3.46
944 1265 2.026262 TGCTGAAATACTCACCCTTCCC 60.026 50.000 0.00 0.00 0.00 3.97
945 1266 2.239907 GCTGAAATACTCACCCTTCCCT 59.760 50.000 0.00 0.00 0.00 4.20
946 1267 3.878778 CTGAAATACTCACCCTTCCCTG 58.121 50.000 0.00 0.00 0.00 4.45
947 1268 2.026262 TGAAATACTCACCCTTCCCTGC 60.026 50.000 0.00 0.00 0.00 4.85
948 1269 1.668826 AATACTCACCCTTCCCTGCA 58.331 50.000 0.00 0.00 0.00 4.41
953 1274 4.938756 ACCCTTCCCTGCACCCCA 62.939 66.667 0.00 0.00 0.00 4.96
954 1275 4.366684 CCCTTCCCTGCACCCCAC 62.367 72.222 0.00 0.00 0.00 4.61
955 1276 4.366684 CCTTCCCTGCACCCCACC 62.367 72.222 0.00 0.00 0.00 4.61
980 1301 2.291043 CGCCCCCTGTAGGTGTTCT 61.291 63.158 0.00 0.00 0.00 3.01
982 1303 0.910088 GCCCCCTGTAGGTGTTCTCT 60.910 60.000 0.00 0.00 0.00 3.10
984 1305 1.273324 CCCCCTGTAGGTGTTCTCTCT 60.273 57.143 0.00 0.00 0.00 3.10
985 1306 2.104170 CCCCTGTAGGTGTTCTCTCTC 58.896 57.143 0.00 0.00 0.00 3.20
986 1307 2.291930 CCCCTGTAGGTGTTCTCTCTCT 60.292 54.545 0.00 0.00 0.00 3.10
987 1308 3.020984 CCCTGTAGGTGTTCTCTCTCTC 58.979 54.545 0.00 0.00 0.00 3.20
988 1309 3.020984 CCTGTAGGTGTTCTCTCTCTCC 58.979 54.545 0.00 0.00 0.00 3.71
989 1310 3.308832 CCTGTAGGTGTTCTCTCTCTCCT 60.309 52.174 0.00 0.00 0.00 3.69
990 1311 4.340617 CTGTAGGTGTTCTCTCTCTCCTT 58.659 47.826 0.00 0.00 0.00 3.36
993 1355 2.110899 AGGTGTTCTCTCTCTCCTTCCA 59.889 50.000 0.00 0.00 0.00 3.53
996 1358 1.474879 GTTCTCTCTCTCCTTCCACCG 59.525 57.143 0.00 0.00 0.00 4.94
1012 1374 2.066393 CCGGCCATGGAAGGAGAGA 61.066 63.158 18.40 0.00 0.00 3.10
1024 1386 1.453015 GGAGAGAGAGAGCAGCCGA 60.453 63.158 0.00 0.00 0.00 5.54
1026 1388 0.593128 GAGAGAGAGAGCAGCCGATC 59.407 60.000 0.00 0.00 0.00 3.69
1105 1467 9.099071 ACACATCTAGGATAGCTATTCAGAAAT 57.901 33.333 14.64 5.32 38.99 2.17
1179 1541 5.130477 GGAGATTGGATTTGAGGGTGTACTA 59.870 44.000 0.00 0.00 0.00 1.82
1227 1589 7.450074 TCAATCTGAAGTTTAGCAAGTTCCTA 58.550 34.615 2.80 0.00 40.43 2.94
1263 1625 5.170021 GTTGTGGAAAAGCATTGCATCATA 58.830 37.500 11.91 0.00 0.00 2.15
1320 1682 4.505313 GGAGGATTTCCACAAAGTGTTC 57.495 45.455 0.00 0.00 46.01 3.18
1323 1685 2.621526 GGATTTCCACAAAGTGTTCGGT 59.378 45.455 0.00 0.00 35.64 4.69
1348 1710 4.819761 GCGGGCAGCGAGACATCA 62.820 66.667 0.00 0.00 35.41 3.07
1353 1715 3.084579 CAGCGAGACATCAACGGC 58.915 61.111 0.00 0.00 0.00 5.68
1412 1774 8.618240 TTCATTAGGAACTCTATAGGTTGGAA 57.382 34.615 10.26 4.10 41.75 3.53
1432 1794 1.945387 TGAGAAATCTGATCGCAGCC 58.055 50.000 0.00 0.00 42.01 4.85
1448 1810 1.718527 GCCTAAGCTCGCTTGAAGC 59.281 57.895 14.04 7.20 37.47 3.86
1462 1824 0.320334 TGAAGCGTTCATCGGCAAGA 60.320 50.000 0.00 0.00 40.26 3.02
1683 2048 4.203563 GTTCGCAAACTAAAGTTGGAAACG 59.796 41.667 1.26 0.00 41.22 3.60
1728 2093 3.555966 CCTCTCTGGTTGTCACCTTTTT 58.444 45.455 0.00 0.00 44.61 1.94
1748 2121 4.591321 TTCTGCAGGTAAATCCCTCAAT 57.409 40.909 15.13 0.00 36.75 2.57
1749 2122 4.591321 TCTGCAGGTAAATCCCTCAATT 57.409 40.909 15.13 0.00 36.75 2.32
1751 2124 5.332743 TCTGCAGGTAAATCCCTCAATTTT 58.667 37.500 15.13 0.00 36.75 1.82
1755 2128 5.047377 GCAGGTAAATCCCTCAATTTTCACA 60.047 40.000 0.00 0.00 36.75 3.58
1771 2151 7.852971 ATTTTCACATTTTGGATATGGCAAG 57.147 32.000 0.00 0.00 0.00 4.01
1793 2173 9.463443 GCAAGTAAAATGTTGAACTAGACAATT 57.537 29.630 0.00 0.00 0.00 2.32
1798 2178 8.661352 AAAATGTTGAACTAGACAATTTTGGG 57.339 30.769 0.00 0.00 27.51 4.12
1801 2181 7.411486 TGTTGAACTAGACAATTTTGGGAAA 57.589 32.000 0.00 0.00 0.00 3.13
1802 2182 7.262048 TGTTGAACTAGACAATTTTGGGAAAC 58.738 34.615 0.00 0.00 0.00 2.78
1808 2188 3.258123 AGACAATTTTGGGAAACGATGGG 59.742 43.478 0.00 0.00 0.00 4.00
1840 2222 4.385358 TTTTGGTCTTGTTTGAAGCTCC 57.615 40.909 0.00 0.00 0.00 4.70
1842 2224 1.140052 TGGTCTTGTTTGAAGCTCCGA 59.860 47.619 0.00 0.00 0.00 4.55
1849 2231 4.067972 TGTTTGAAGCTCCGAACTAACT 57.932 40.909 4.55 0.00 32.86 2.24
1907 2290 4.021102 ACTAGACAATGTTGAACTGGGG 57.979 45.455 0.00 0.00 0.00 4.96
1910 2293 4.927267 AGACAATGTTGAACTGGGGATA 57.073 40.909 0.00 0.00 0.00 2.59
1920 2308 4.272489 TGAACTGGGGATAATGAAAGCAG 58.728 43.478 0.00 0.00 0.00 4.24
1939 2327 3.605634 CAGACCACAATTCCACGGATAA 58.394 45.455 0.00 0.00 0.00 1.75
1978 2366 1.486310 CCCTGAAACGGATGATCCTCA 59.514 52.381 10.18 5.85 33.30 3.86
2034 2422 2.497792 TAGTCCCCGAGGTAACCGCA 62.498 60.000 0.00 0.00 37.17 5.69
2036 2424 2.215625 TCCCCGAGGTAACCGCAAA 61.216 57.895 0.00 0.00 37.17 3.68
2037 2425 2.036571 CCCCGAGGTAACCGCAAAC 61.037 63.158 0.00 0.00 37.17 2.93
2039 2427 0.604511 CCCGAGGTAACCGCAAACTT 60.605 55.000 0.00 0.00 37.17 2.66
2041 2429 1.196127 CCGAGGTAACCGCAAACTTTC 59.804 52.381 0.00 0.00 37.17 2.62
2042 2430 1.196127 CGAGGTAACCGCAAACTTTCC 59.804 52.381 0.00 0.00 37.17 3.13
2073 2461 1.823828 ACGATTAGATCACGACACGC 58.176 50.000 0.00 0.00 0.00 5.34
2119 2508 0.242017 GCAAGACACTGGAATGCCAC 59.758 55.000 0.00 0.00 39.92 5.01
2180 2569 4.322198 GCCAAGAAGAAATCAATGGAGCAA 60.322 41.667 0.00 0.00 38.78 3.91
2183 2572 6.877322 CCAAGAAGAAATCAATGGAGCAAAAT 59.123 34.615 0.00 0.00 38.78 1.82
2213 2602 3.873361 GCTCAGCAAATCAGTATGCACTA 59.127 43.478 0.00 0.00 44.95 2.74
2270 2659 3.447586 ACTATATCAACACGGACACAGCT 59.552 43.478 0.00 0.00 0.00 4.24
2309 2698 4.908156 CAGACAAAAAGAAGCAACATCGAG 59.092 41.667 0.00 0.00 0.00 4.04
2321 2710 3.470888 ATCGAGTTCAGCCCCGGG 61.471 66.667 15.80 15.80 0.00 5.73
2324 2713 3.090532 GAGTTCAGCCCCGGGGAT 61.091 66.667 44.86 37.78 37.50 3.85
2372 2761 3.176552 CCAGAGCTGGTGAGATACAAG 57.823 52.381 8.38 0.00 45.53 3.16
2381 2780 2.354805 GGTGAGATACAAGTCCACACCC 60.355 54.545 0.00 0.00 38.73 4.61
2427 2828 3.037851 TCATGTGGAGACTGCTATCCT 57.962 47.619 0.00 0.00 36.50 3.24
2431 2832 2.906389 TGTGGAGACTGCTATCCTGTTT 59.094 45.455 0.00 0.00 36.50 2.83
2432 2833 3.265791 GTGGAGACTGCTATCCTGTTTG 58.734 50.000 0.00 0.00 36.50 2.93
2433 2834 2.284190 GGAGACTGCTATCCTGTTTGC 58.716 52.381 0.00 0.00 32.51 3.68
2434 2835 1.929836 GAGACTGCTATCCTGTTTGCG 59.070 52.381 0.00 0.00 0.00 4.85
2437 2838 2.541762 GACTGCTATCCTGTTTGCGATC 59.458 50.000 0.00 0.00 0.00 3.69
2438 2839 2.169352 ACTGCTATCCTGTTTGCGATCT 59.831 45.455 0.00 0.00 0.00 2.75
2440 2841 3.982475 TGCTATCCTGTTTGCGATCTAG 58.018 45.455 0.00 0.00 0.00 2.43
2455 2856 7.526142 TGCGATCTAGTCTTCCATAATAACT 57.474 36.000 0.00 0.00 0.00 2.24
2456 2857 7.371159 TGCGATCTAGTCTTCCATAATAACTG 58.629 38.462 0.00 0.00 0.00 3.16
2479 2882 4.222336 AGAGTCTATCTACATTGCAGGCT 58.778 43.478 0.00 0.00 36.10 4.58
2489 2892 0.964358 ATTGCAGGCTGCTTCTCCAC 60.964 55.000 36.50 9.19 45.31 4.02
2608 3011 4.829064 ACTGCTCGAAGTTTATTTTGCA 57.171 36.364 0.00 0.00 0.00 4.08
2616 3019 6.744112 TCGAAGTTTATTTTGCAAGACCAAT 58.256 32.000 0.00 0.00 0.00 3.16
2639 3042 0.746923 GGGAACACCGGCACCTAATC 60.747 60.000 0.00 0.00 0.00 1.75
2642 3045 0.035439 AACACCGGCACCTAATCCAG 60.035 55.000 0.00 0.00 0.00 3.86
2645 3048 1.524621 CCGGCACCTAATCCAGCTG 60.525 63.158 6.78 6.78 0.00 4.24
2654 3057 0.104855 TAATCCAGCTGATCGCGCTT 59.895 50.000 17.39 0.00 45.59 4.68
2664 3067 3.385749 ATCGCGCTTCCGGAACCAT 62.386 57.895 14.35 0.00 34.32 3.55
2697 3100 0.614979 GGCTCAGGTACTCTCCACCA 60.615 60.000 0.00 0.00 38.62 4.17
2699 3102 1.205893 GCTCAGGTACTCTCCACCAAG 59.794 57.143 0.00 0.00 38.62 3.61
2705 3108 2.119847 TACTCTCCACCAAGCCCCCT 62.120 60.000 0.00 0.00 0.00 4.79
2728 3131 3.788145 CCCCGCCCGTGGTCAATA 61.788 66.667 0.00 0.00 0.00 1.90
2729 3132 2.269562 CCCGCCCGTGGTCAATAA 59.730 61.111 0.00 0.00 0.00 1.40
2769 3179 3.937814 TCCGCATACATGTCTGAAGTTT 58.062 40.909 14.90 0.00 0.00 2.66
2775 3185 6.082338 GCATACATGTCTGAAGTTTCAAGTG 58.918 40.000 14.90 0.00 36.64 3.16
2777 3187 7.642669 CATACATGTCTGAAGTTTCAAGTGTT 58.357 34.615 0.00 0.00 36.64 3.32
2778 3188 5.883661 ACATGTCTGAAGTTTCAAGTGTTG 58.116 37.500 0.00 0.00 36.64 3.33
2788 3198 4.037923 AGTTTCAAGTGTTGTTATGCAGGG 59.962 41.667 0.00 0.00 0.00 4.45
2809 3219 2.783135 CCACACAATGTAGAAGCACCT 58.217 47.619 0.00 0.00 0.00 4.00
2823 3233 1.853250 GCACCTAGCAAACTCCCCCT 61.853 60.000 0.00 0.00 44.79 4.79
2875 3285 2.693115 CCATCCCCAACCCCCGTA 60.693 66.667 0.00 0.00 0.00 4.02
2884 3294 3.830464 AACCCCCGTAAAACGCGCT 62.830 57.895 5.73 0.00 40.91 5.92
2902 3312 1.545651 GCTAAACCAGTGGTCTTGCCT 60.546 52.381 17.06 0.00 33.12 4.75
2914 3324 4.382320 TTGCCTACCGCCGACCAC 62.382 66.667 0.00 0.00 36.24 4.16
2917 3327 2.183555 CCTACCGCCGACCACTTC 59.816 66.667 0.00 0.00 0.00 3.01
3028 3438 8.956533 TTTCTGTTATGCAGTGCTTATATGTA 57.043 30.769 17.60 0.00 45.23 2.29
3073 3483 5.979993 TGCAATTAAATCACCAATGCTCAT 58.020 33.333 0.00 0.00 0.00 2.90
3109 3519 1.531264 CGAACTGGACATAGACGACCG 60.531 57.143 0.00 0.00 0.00 4.79
3161 3571 1.654023 GAAAGGCCACCCCGATTTCG 61.654 60.000 5.01 0.00 39.21 3.46
3166 3576 1.222387 CCACCCCGATTTCGCCTAA 59.778 57.895 0.00 0.00 38.18 2.69
3188 3598 0.531974 TGGCGACAAAGACACACTCC 60.532 55.000 0.00 0.00 37.44 3.85
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 1.375523 GAACGGTTCTGGCGGATGT 60.376 57.895 13.49 0.00 0.00 3.06
1 2 0.673644 AAGAACGGTTCTGGCGGATG 60.674 55.000 23.05 0.00 40.59 3.51
2 3 0.036306 AAAGAACGGTTCTGGCGGAT 59.964 50.000 23.05 4.49 40.59 4.18
3 4 0.179040 AAAAGAACGGTTCTGGCGGA 60.179 50.000 23.05 0.00 40.59 5.54
4 5 0.237498 GAAAAGAACGGTTCTGGCGG 59.763 55.000 23.05 0.00 40.59 6.13
5 6 0.237498 GGAAAAGAACGGTTCTGGCG 59.763 55.000 23.05 0.00 40.59 5.69
6 7 1.266989 CAGGAAAAGAACGGTTCTGGC 59.733 52.381 23.05 14.72 40.59 4.85
7 8 1.266989 GCAGGAAAAGAACGGTTCTGG 59.733 52.381 23.05 10.31 40.59 3.86
8 9 2.222027 AGCAGGAAAAGAACGGTTCTG 58.778 47.619 23.05 11.83 40.59 3.02
9 10 2.640316 AGCAGGAAAAGAACGGTTCT 57.360 45.000 17.38 17.38 43.15 3.01
10 11 3.372060 CAAAGCAGGAAAAGAACGGTTC 58.628 45.455 12.91 12.91 0.00 3.62
11 12 2.100749 CCAAAGCAGGAAAAGAACGGTT 59.899 45.455 0.00 0.00 0.00 4.44
12 13 1.681264 CCAAAGCAGGAAAAGAACGGT 59.319 47.619 0.00 0.00 0.00 4.83
13 14 1.681264 ACCAAAGCAGGAAAAGAACGG 59.319 47.619 0.00 0.00 0.00 4.44
14 15 3.181491 TGAACCAAAGCAGGAAAAGAACG 60.181 43.478 0.00 0.00 0.00 3.95
15 16 4.385358 TGAACCAAAGCAGGAAAAGAAC 57.615 40.909 0.00 0.00 0.00 3.01
16 17 4.261572 CGATGAACCAAAGCAGGAAAAGAA 60.262 41.667 0.00 0.00 0.00 2.52
17 18 3.253188 CGATGAACCAAAGCAGGAAAAGA 59.747 43.478 0.00 0.00 0.00 2.52
18 19 3.004734 ACGATGAACCAAAGCAGGAAAAG 59.995 43.478 0.00 0.00 0.00 2.27
19 20 2.955660 ACGATGAACCAAAGCAGGAAAA 59.044 40.909 0.00 0.00 0.00 2.29
20 21 2.582052 ACGATGAACCAAAGCAGGAAA 58.418 42.857 0.00 0.00 0.00 3.13
21 22 2.270352 ACGATGAACCAAAGCAGGAA 57.730 45.000 0.00 0.00 0.00 3.36
22 23 2.151202 GAACGATGAACCAAAGCAGGA 58.849 47.619 0.00 0.00 0.00 3.86
23 24 1.879380 TGAACGATGAACCAAAGCAGG 59.121 47.619 0.00 0.00 0.00 4.85
24 25 2.549754 ACTGAACGATGAACCAAAGCAG 59.450 45.455 0.00 0.00 0.00 4.24
25 26 2.571212 ACTGAACGATGAACCAAAGCA 58.429 42.857 0.00 0.00 0.00 3.91
26 27 3.626028 AACTGAACGATGAACCAAAGC 57.374 42.857 0.00 0.00 0.00 3.51
27 28 5.577835 TCAAAACTGAACGATGAACCAAAG 58.422 37.500 0.00 0.00 0.00 2.77
28 29 5.568685 TCAAAACTGAACGATGAACCAAA 57.431 34.783 0.00 0.00 0.00 3.28
29 30 5.568685 TTCAAAACTGAACGATGAACCAA 57.431 34.783 0.00 0.00 0.00 3.67
30 31 5.298026 TGATTCAAAACTGAACGATGAACCA 59.702 36.000 0.00 0.00 33.29 3.67
31 32 5.757886 TGATTCAAAACTGAACGATGAACC 58.242 37.500 0.00 0.00 33.29 3.62
32 33 6.306356 CCATGATTCAAAACTGAACGATGAAC 59.694 38.462 0.00 0.00 33.29 3.18
33 34 6.380995 CCATGATTCAAAACTGAACGATGAA 58.619 36.000 0.00 0.00 34.80 2.57
34 35 5.619757 GCCATGATTCAAAACTGAACGATGA 60.620 40.000 0.00 0.00 0.00 2.92
35 36 4.560035 GCCATGATTCAAAACTGAACGATG 59.440 41.667 0.00 0.00 0.00 3.84
36 37 4.218200 TGCCATGATTCAAAACTGAACGAT 59.782 37.500 0.00 0.00 0.00 3.73
37 38 3.567585 TGCCATGATTCAAAACTGAACGA 59.432 39.130 0.00 0.00 0.00 3.85
38 39 3.899734 TGCCATGATTCAAAACTGAACG 58.100 40.909 0.00 0.00 0.00 3.95
39 40 4.022068 TCCTGCCATGATTCAAAACTGAAC 60.022 41.667 0.00 0.00 0.00 3.18
40 41 4.022068 GTCCTGCCATGATTCAAAACTGAA 60.022 41.667 0.00 0.00 0.00 3.02
47 48 0.617935 TCCGTCCTGCCATGATTCAA 59.382 50.000 0.00 0.00 0.00 2.69
52 53 3.785859 GCCTCCGTCCTGCCATGA 61.786 66.667 0.00 0.00 0.00 3.07
114 115 1.659794 GTTGATGCCAACGCCAGTT 59.340 52.632 0.00 0.00 42.60 3.16
156 157 0.948623 CGAACATGACGTTGCTCCCA 60.949 55.000 0.00 0.00 38.19 4.37
159 160 0.669318 TCCCGAACATGACGTTGCTC 60.669 55.000 0.00 0.00 38.19 4.26
166 167 0.810031 CGTCCCATCCCGAACATGAC 60.810 60.000 0.00 0.00 0.00 3.06
183 184 0.810031 GTATGTCTTCCATGGCGCGT 60.810 55.000 6.96 0.95 34.86 6.01
195 196 0.668535 TAGCTGCGATGCGTATGTCT 59.331 50.000 0.00 0.00 38.13 3.41
222 223 5.915196 CAGCATTAGCAAACAGATCATCATG 59.085 40.000 0.00 0.00 45.49 3.07
231 232 3.228749 CACGAACAGCATTAGCAAACAG 58.771 45.455 0.00 0.00 45.49 3.16
234 235 2.031245 CACCACGAACAGCATTAGCAAA 60.031 45.455 0.00 0.00 45.49 3.68
235 236 1.535028 CACCACGAACAGCATTAGCAA 59.465 47.619 0.00 0.00 45.49 3.91
246 247 1.008538 CTTGGCAAGCACCACGAAC 60.009 57.895 15.25 0.00 40.19 3.95
252 253 3.376918 GCTCCCTTGGCAAGCACC 61.377 66.667 21.77 5.78 36.06 5.01
253 254 3.376918 GGCTCCCTTGGCAAGCAC 61.377 66.667 21.77 9.68 37.78 4.40
289 290 3.346631 CTTCATTGCTGCGCCACCC 62.347 63.158 4.18 0.00 0.00 4.61
290 291 2.180017 CTTCATTGCTGCGCCACC 59.820 61.111 4.18 0.00 0.00 4.61
298 299 0.242017 GCTGTTTCCGCTTCATTGCT 59.758 50.000 0.00 0.00 0.00 3.91
299 300 0.733909 GGCTGTTTCCGCTTCATTGC 60.734 55.000 0.00 0.00 0.00 3.56
301 302 1.586154 CGGGCTGTTTCCGCTTCATT 61.586 55.000 0.00 0.00 41.07 2.57
302 303 2.040544 CGGGCTGTTTCCGCTTCAT 61.041 57.895 0.00 0.00 41.07 2.57
303 304 2.463589 ATCGGGCTGTTTCCGCTTCA 62.464 55.000 0.00 0.00 46.43 3.02
304 305 1.745489 ATCGGGCTGTTTCCGCTTC 60.745 57.895 0.00 0.00 46.43 3.86
305 306 2.040544 CATCGGGCTGTTTCCGCTT 61.041 57.895 0.00 0.00 46.43 4.68
306 307 2.257409 ATCATCGGGCTGTTTCCGCT 62.257 55.000 0.00 0.00 46.43 5.52
307 308 1.819632 ATCATCGGGCTGTTTCCGC 60.820 57.895 0.00 0.00 46.43 5.54
309 310 0.107214 TCCATCATCGGGCTGTTTCC 60.107 55.000 0.00 0.00 0.00 3.13
311 312 2.442236 AATCCATCATCGGGCTGTTT 57.558 45.000 0.00 0.00 0.00 2.83
312 313 2.172505 TGTAATCCATCATCGGGCTGTT 59.827 45.455 0.00 0.00 0.00 3.16
313 314 1.768275 TGTAATCCATCATCGGGCTGT 59.232 47.619 0.00 0.00 0.00 4.40
314 315 2.549064 TGTAATCCATCATCGGGCTG 57.451 50.000 0.00 0.00 0.00 4.85
315 316 3.214328 GTTTGTAATCCATCATCGGGCT 58.786 45.455 0.00 0.00 0.00 5.19
316 317 2.293399 GGTTTGTAATCCATCATCGGGC 59.707 50.000 0.00 0.00 0.00 6.13
317 318 2.884639 GGGTTTGTAATCCATCATCGGG 59.115 50.000 0.00 0.00 0.00 5.14
318 319 2.884639 GGGGTTTGTAATCCATCATCGG 59.115 50.000 0.00 0.00 0.00 4.18
319 320 2.884639 GGGGGTTTGTAATCCATCATCG 59.115 50.000 0.00 0.00 0.00 3.84
320 321 4.184649 AGGGGGTTTGTAATCCATCATC 57.815 45.455 0.00 0.00 0.00 2.92
321 322 4.141018 GGTAGGGGGTTTGTAATCCATCAT 60.141 45.833 0.00 0.00 0.00 2.45
322 323 3.203487 GGTAGGGGGTTTGTAATCCATCA 59.797 47.826 0.00 0.00 0.00 3.07
323 324 3.436035 GGGTAGGGGGTTTGTAATCCATC 60.436 52.174 0.00 0.00 0.00 3.51
324 325 2.516702 GGGTAGGGGGTTTGTAATCCAT 59.483 50.000 0.00 0.00 0.00 3.41
327 328 2.848071 TCAGGGTAGGGGGTTTGTAATC 59.152 50.000 0.00 0.00 0.00 1.75
328 329 2.937442 TCAGGGTAGGGGGTTTGTAAT 58.063 47.619 0.00 0.00 0.00 1.89
330 331 2.672703 ATCAGGGTAGGGGGTTTGTA 57.327 50.000 0.00 0.00 0.00 2.41
332 333 2.919772 AAATCAGGGTAGGGGGTTTG 57.080 50.000 0.00 0.00 0.00 2.93
333 334 3.862309 ACATAAATCAGGGTAGGGGGTTT 59.138 43.478 0.00 0.00 0.00 3.27
336 337 4.215109 CAAACATAAATCAGGGTAGGGGG 58.785 47.826 0.00 0.00 0.00 5.40
337 338 4.215109 CCAAACATAAATCAGGGTAGGGG 58.785 47.826 0.00 0.00 0.00 4.79
338 339 4.867086 ACCAAACATAAATCAGGGTAGGG 58.133 43.478 0.00 0.00 0.00 3.53
339 340 7.470009 GCATTACCAAACATAAATCAGGGTAGG 60.470 40.741 0.00 0.00 31.67 3.18
340 341 7.285401 AGCATTACCAAACATAAATCAGGGTAG 59.715 37.037 0.00 0.00 31.67 3.18
342 343 5.957774 AGCATTACCAAACATAAATCAGGGT 59.042 36.000 0.00 0.00 0.00 4.34
343 344 6.127366 ACAGCATTACCAAACATAAATCAGGG 60.127 38.462 0.00 0.00 0.00 4.45
344 345 6.866480 ACAGCATTACCAAACATAAATCAGG 58.134 36.000 0.00 0.00 0.00 3.86
345 346 8.649841 CAAACAGCATTACCAAACATAAATCAG 58.350 33.333 0.00 0.00 0.00 2.90
346 347 8.147058 ACAAACAGCATTACCAAACATAAATCA 58.853 29.630 0.00 0.00 0.00 2.57
347 348 8.532977 ACAAACAGCATTACCAAACATAAATC 57.467 30.769 0.00 0.00 0.00 2.17
348 349 9.638239 CTACAAACAGCATTACCAAACATAAAT 57.362 29.630 0.00 0.00 0.00 1.40
349 350 8.634444 ACTACAAACAGCATTACCAAACATAAA 58.366 29.630 0.00 0.00 0.00 1.40
350 351 8.172352 ACTACAAACAGCATTACCAAACATAA 57.828 30.769 0.00 0.00 0.00 1.90
352 353 6.648879 ACTACAAACAGCATTACCAAACAT 57.351 33.333 0.00 0.00 0.00 2.71
353 354 6.292973 CGTACTACAAACAGCATTACCAAACA 60.293 38.462 0.00 0.00 0.00 2.83
354 355 6.075280 CGTACTACAAACAGCATTACCAAAC 58.925 40.000 0.00 0.00 0.00 2.93
355 356 5.759273 ACGTACTACAAACAGCATTACCAAA 59.241 36.000 0.00 0.00 0.00 3.28
356 357 5.299148 ACGTACTACAAACAGCATTACCAA 58.701 37.500 0.00 0.00 0.00 3.67
358 359 6.753279 TCATACGTACTACAAACAGCATTACC 59.247 38.462 0.00 0.00 0.00 2.85
359 360 7.745022 TCATACGTACTACAAACAGCATTAC 57.255 36.000 0.00 0.00 0.00 1.89
360 361 8.936070 ATTCATACGTACTACAAACAGCATTA 57.064 30.769 0.00 0.00 0.00 1.90
361 362 7.011109 GGATTCATACGTACTACAAACAGCATT 59.989 37.037 0.00 0.00 0.00 3.56
362 363 6.479001 GGATTCATACGTACTACAAACAGCAT 59.521 38.462 0.00 0.00 0.00 3.79
364 365 5.808540 TGGATTCATACGTACTACAAACAGC 59.191 40.000 0.00 0.00 0.00 4.40
365 366 7.255569 TCTGGATTCATACGTACTACAAACAG 58.744 38.462 0.00 2.19 0.00 3.16
366 367 7.094075 ACTCTGGATTCATACGTACTACAAACA 60.094 37.037 0.00 0.00 0.00 2.83
367 368 7.220300 CACTCTGGATTCATACGTACTACAAAC 59.780 40.741 0.00 0.00 0.00 2.93
370 371 5.220989 GCACTCTGGATTCATACGTACTACA 60.221 44.000 0.00 0.00 0.00 2.74
371 372 5.213675 GCACTCTGGATTCATACGTACTAC 58.786 45.833 0.00 0.00 0.00 2.73
372 373 4.024302 CGCACTCTGGATTCATACGTACTA 60.024 45.833 0.00 0.00 0.00 1.82
373 374 3.243101 CGCACTCTGGATTCATACGTACT 60.243 47.826 0.00 0.00 0.00 2.73
374 375 3.043586 CGCACTCTGGATTCATACGTAC 58.956 50.000 0.00 0.00 0.00 3.67
375 376 2.034179 CCGCACTCTGGATTCATACGTA 59.966 50.000 0.00 0.00 0.00 3.57
376 377 1.202417 CCGCACTCTGGATTCATACGT 60.202 52.381 0.00 0.00 0.00 3.57
377 378 1.202417 ACCGCACTCTGGATTCATACG 60.202 52.381 0.00 0.00 0.00 3.06
378 379 2.205074 CACCGCACTCTGGATTCATAC 58.795 52.381 0.00 0.00 0.00 2.39
379 380 1.138859 CCACCGCACTCTGGATTCATA 59.861 52.381 0.00 0.00 0.00 2.15
380 381 0.107508 CCACCGCACTCTGGATTCAT 60.108 55.000 0.00 0.00 0.00 2.57
381 382 1.296392 CCACCGCACTCTGGATTCA 59.704 57.895 0.00 0.00 0.00 2.57
382 383 2.109126 GCCACCGCACTCTGGATTC 61.109 63.158 0.00 0.00 34.03 2.52
383 384 2.045926 GCCACCGCACTCTGGATT 60.046 61.111 0.00 0.00 34.03 3.01
384 385 4.457496 CGCCACCGCACTCTGGAT 62.457 66.667 0.00 0.00 34.03 3.41
409 658 6.923928 TTAATTAATACACGGTTACCCTGC 57.076 37.500 0.00 0.00 0.00 4.85
410 659 9.940166 GAAATTAATTAATACACGGTTACCCTG 57.060 33.333 11.07 0.00 0.00 4.45
411 660 9.123902 GGAAATTAATTAATACACGGTTACCCT 57.876 33.333 11.07 0.00 0.00 4.34
412 661 9.123902 AGGAAATTAATTAATACACGGTTACCC 57.876 33.333 11.07 0.83 0.00 3.69
433 682 9.403583 CCAAGGTTTACATTAGCTAATAGGAAA 57.596 33.333 18.45 17.03 0.00 3.13
434 683 7.501225 GCCAAGGTTTACATTAGCTAATAGGAA 59.499 37.037 18.45 12.67 0.00 3.36
435 684 6.996282 GCCAAGGTTTACATTAGCTAATAGGA 59.004 38.462 18.45 7.57 0.00 2.94
436 685 6.073222 CGCCAAGGTTTACATTAGCTAATAGG 60.073 42.308 18.45 10.08 0.00 2.57
437 686 6.704493 TCGCCAAGGTTTACATTAGCTAATAG 59.296 38.462 18.45 14.55 0.00 1.73
438 687 6.480981 GTCGCCAAGGTTTACATTAGCTAATA 59.519 38.462 18.45 1.63 0.00 0.98
441 690 4.186159 GTCGCCAAGGTTTACATTAGCTA 58.814 43.478 0.00 0.00 0.00 3.32
443 692 2.222953 CGTCGCCAAGGTTTACATTAGC 60.223 50.000 0.00 0.00 0.00 3.09
444 693 2.997986 ACGTCGCCAAGGTTTACATTAG 59.002 45.455 0.00 0.00 0.00 1.73
445 694 2.737783 CACGTCGCCAAGGTTTACATTA 59.262 45.455 0.00 0.00 0.00 1.90
447 696 1.153353 CACGTCGCCAAGGTTTACAT 58.847 50.000 0.00 0.00 0.00 2.29
448 697 0.179078 ACACGTCGCCAAGGTTTACA 60.179 50.000 0.00 0.00 0.00 2.41
449 698 1.456923 GTACACGTCGCCAAGGTTTAC 59.543 52.381 0.00 0.00 0.00 2.01
450 699 1.605202 GGTACACGTCGCCAAGGTTTA 60.605 52.381 0.00 0.00 0.00 2.01
453 702 2.341176 GGTACACGTCGCCAAGGT 59.659 61.111 0.00 0.00 0.00 3.50
454 703 2.340809 TGGTACACGTCGCCAAGG 59.659 61.111 0.00 0.00 0.00 3.61
471 789 1.227556 GTCCAGGTCTGTTGCGTGT 60.228 57.895 0.00 0.00 0.00 4.49
473 791 1.816863 ATCGTCCAGGTCTGTTGCGT 61.817 55.000 0.00 0.00 0.00 5.24
475 793 0.798776 CAATCGTCCAGGTCTGTTGC 59.201 55.000 0.00 0.00 0.00 4.17
477 795 2.930826 AACAATCGTCCAGGTCTGTT 57.069 45.000 0.00 0.00 0.00 3.16
478 796 2.368875 AGAAACAATCGTCCAGGTCTGT 59.631 45.455 0.00 0.00 0.00 3.41
479 797 2.738846 CAGAAACAATCGTCCAGGTCTG 59.261 50.000 0.00 0.00 0.00 3.51
480 798 2.872038 GCAGAAACAATCGTCCAGGTCT 60.872 50.000 0.00 0.00 0.00 3.85
481 799 1.464997 GCAGAAACAATCGTCCAGGTC 59.535 52.381 0.00 0.00 0.00 3.85
482 800 1.202758 TGCAGAAACAATCGTCCAGGT 60.203 47.619 0.00 0.00 0.00 4.00
483 801 1.197721 GTGCAGAAACAATCGTCCAGG 59.802 52.381 0.00 0.00 0.00 4.45
484 802 1.197721 GGTGCAGAAACAATCGTCCAG 59.802 52.381 0.00 0.00 0.00 3.86
485 803 1.202758 AGGTGCAGAAACAATCGTCCA 60.203 47.619 0.00 0.00 0.00 4.02
486 804 1.523758 AGGTGCAGAAACAATCGTCC 58.476 50.000 0.00 0.00 0.00 4.79
487 805 3.064207 TGTAGGTGCAGAAACAATCGTC 58.936 45.455 0.00 0.00 0.00 4.20
488 806 3.120321 TGTAGGTGCAGAAACAATCGT 57.880 42.857 0.00 0.00 0.00 3.73
489 807 3.684305 TGATGTAGGTGCAGAAACAATCG 59.316 43.478 0.00 0.00 0.00 3.34
490 808 5.627499 TTGATGTAGGTGCAGAAACAATC 57.373 39.130 0.00 0.00 0.00 2.67
491 809 4.082571 GCTTGATGTAGGTGCAGAAACAAT 60.083 41.667 0.00 0.00 0.00 2.71
492 810 3.253188 GCTTGATGTAGGTGCAGAAACAA 59.747 43.478 0.00 0.00 0.00 2.83
493 811 2.813754 GCTTGATGTAGGTGCAGAAACA 59.186 45.455 0.00 0.00 0.00 2.83
494 812 2.162408 GGCTTGATGTAGGTGCAGAAAC 59.838 50.000 0.00 0.00 0.00 2.78
495 813 2.224744 TGGCTTGATGTAGGTGCAGAAA 60.225 45.455 0.00 0.00 0.00 2.52
496 814 1.350684 TGGCTTGATGTAGGTGCAGAA 59.649 47.619 0.00 0.00 0.00 3.02
497 815 0.983467 TGGCTTGATGTAGGTGCAGA 59.017 50.000 0.00 0.00 0.00 4.26
498 816 1.376543 CTGGCTTGATGTAGGTGCAG 58.623 55.000 0.00 0.00 0.00 4.41
499 817 0.035152 CCTGGCTTGATGTAGGTGCA 60.035 55.000 0.00 0.00 0.00 4.57
500 818 1.379642 GCCTGGCTTGATGTAGGTGC 61.380 60.000 12.43 0.00 32.85 5.01
501 819 0.035152 TGCCTGGCTTGATGTAGGTG 60.035 55.000 21.03 0.00 32.85 4.00
502 820 0.254178 CTGCCTGGCTTGATGTAGGT 59.746 55.000 21.03 0.00 32.85 3.08
503 821 0.543277 TCTGCCTGGCTTGATGTAGG 59.457 55.000 21.03 0.00 0.00 3.18
504 822 1.483827 TCTCTGCCTGGCTTGATGTAG 59.516 52.381 21.03 6.92 0.00 2.74
505 823 1.208052 GTCTCTGCCTGGCTTGATGTA 59.792 52.381 21.03 0.00 0.00 2.29
506 824 0.035630 GTCTCTGCCTGGCTTGATGT 60.036 55.000 21.03 0.00 0.00 3.06
507 825 0.035725 TGTCTCTGCCTGGCTTGATG 60.036 55.000 21.03 11.36 0.00 3.07
508 826 0.917533 ATGTCTCTGCCTGGCTTGAT 59.082 50.000 21.03 0.68 0.00 2.57
509 827 1.571955 TATGTCTCTGCCTGGCTTGA 58.428 50.000 21.03 16.18 0.00 3.02
510 828 2.408271 TTATGTCTCTGCCTGGCTTG 57.592 50.000 21.03 12.70 0.00 4.01
511 829 3.659183 ATTTATGTCTCTGCCTGGCTT 57.341 42.857 21.03 0.00 0.00 4.35
512 830 3.054139 TCAATTTATGTCTCTGCCTGGCT 60.054 43.478 21.03 0.00 0.00 4.75
513 831 3.282021 TCAATTTATGTCTCTGCCTGGC 58.718 45.455 12.87 12.87 0.00 4.85
514 832 6.349115 GCATATCAATTTATGTCTCTGCCTGG 60.349 42.308 0.00 0.00 33.07 4.45
515 833 6.430308 AGCATATCAATTTATGTCTCTGCCTG 59.570 38.462 0.00 0.00 33.07 4.85
516 834 6.540995 AGCATATCAATTTATGTCTCTGCCT 58.459 36.000 0.00 0.00 33.07 4.75
517 835 6.401903 CGAGCATATCAATTTATGTCTCTGCC 60.402 42.308 13.60 0.00 34.33 4.85
518 836 6.532311 CGAGCATATCAATTTATGTCTCTGC 58.468 40.000 13.60 0.00 34.33 4.26
519 837 6.146673 TGCGAGCATATCAATTTATGTCTCTG 59.853 38.462 13.60 10.50 34.33 3.35
520 838 6.146837 GTGCGAGCATATCAATTTATGTCTCT 59.853 38.462 0.00 0.96 34.33 3.10
534 852 1.665679 CTTTTGACCGTGCGAGCATAT 59.334 47.619 0.00 0.00 0.00 1.78
535 853 1.075542 CTTTTGACCGTGCGAGCATA 58.924 50.000 0.00 0.00 0.00 3.14
537 855 2.892334 GCTTTTGACCGTGCGAGCA 61.892 57.895 0.00 0.00 0.00 4.26
554 872 3.419759 CACCGCTGTTGGGTACGC 61.420 66.667 2.35 2.35 35.58 4.42
555 873 2.029964 ACACCGCTGTTGGGTACG 59.970 61.111 0.00 0.00 35.58 3.67
556 874 2.613506 GCACACCGCTGTTGGGTAC 61.614 63.158 0.00 0.00 35.58 3.34
557 875 2.281208 GCACACCGCTGTTGGGTA 60.281 61.111 0.00 0.00 35.58 3.69
562 880 3.572539 CACACGCACACCGCTGTT 61.573 61.111 0.00 0.00 41.76 3.16
564 882 4.000557 GACACACGCACACCGCTG 62.001 66.667 0.00 0.00 41.76 5.18
565 883 4.522689 TGACACACGCACACCGCT 62.523 61.111 0.00 0.00 41.76 5.52
566 884 4.000557 CTGACACACGCACACCGC 62.001 66.667 0.00 0.00 41.76 5.68
567 885 2.171079 AACTGACACACGCACACCG 61.171 57.895 0.00 0.00 44.21 4.94
569 887 0.247655 CACAACTGACACACGCACAC 60.248 55.000 0.00 0.00 0.00 3.82
570 888 0.390472 TCACAACTGACACACGCACA 60.390 50.000 0.00 0.00 0.00 4.57
837 1155 4.821589 GCCTTCTCCGTCGCCTGG 62.822 72.222 0.00 0.00 0.00 4.45
867 1186 0.681733 ATCAGAACTCACCACGCTGT 59.318 50.000 0.00 0.00 0.00 4.40
873 1192 3.176411 AGATGTGGATCAGAACTCACCA 58.824 45.455 0.00 0.00 0.00 4.17
880 1199 2.428530 CGACCTGAGATGTGGATCAGAA 59.571 50.000 3.83 0.00 44.68 3.02
886 1205 2.710902 CGGCGACCTGAGATGTGGA 61.711 63.158 0.00 0.00 0.00 4.02
897 1218 2.823829 GATTGATGTGCCGGCGACC 61.824 63.158 23.90 12.95 0.00 4.79
899 1220 0.957888 TTTGATTGATGTGCCGGCGA 60.958 50.000 23.90 11.77 0.00 5.54
902 1223 3.788333 AGATTTTGATTGATGTGCCGG 57.212 42.857 0.00 0.00 0.00 6.13
907 1228 9.362539 GTATTTCAGCAAGATTTTGATTGATGT 57.637 29.630 0.00 0.00 42.07 3.06
908 1229 9.582431 AGTATTTCAGCAAGATTTTGATTGATG 57.418 29.630 0.00 0.00 42.62 3.07
909 1230 9.798994 GAGTATTTCAGCAAGATTTTGATTGAT 57.201 29.630 0.00 0.00 36.36 2.57
931 1252 1.198759 GGTGCAGGGAAGGGTGAGTA 61.199 60.000 0.00 0.00 0.00 2.59
933 1254 2.352805 GGTGCAGGGAAGGGTGAG 59.647 66.667 0.00 0.00 0.00 3.51
934 1255 3.256960 GGGTGCAGGGAAGGGTGA 61.257 66.667 0.00 0.00 0.00 4.02
935 1256 4.366684 GGGGTGCAGGGAAGGGTG 62.367 72.222 0.00 0.00 0.00 4.61
936 1257 4.938756 TGGGGTGCAGGGAAGGGT 62.939 66.667 0.00 0.00 0.00 4.34
937 1258 4.366684 GTGGGGTGCAGGGAAGGG 62.367 72.222 0.00 0.00 0.00 3.95
938 1259 4.366684 GGTGGGGTGCAGGGAAGG 62.367 72.222 0.00 0.00 0.00 3.46
939 1260 4.366684 GGGTGGGGTGCAGGGAAG 62.367 72.222 0.00 0.00 0.00 3.46
961 1282 3.971109 GAACACCTACAGGGGGCGC 62.971 68.421 0.00 0.00 44.89 6.53
962 1283 2.240162 GAGAACACCTACAGGGGGCG 62.240 65.000 1.88 0.00 44.89 6.13
963 1284 0.910088 AGAGAACACCTACAGGGGGC 60.910 60.000 1.88 0.00 44.89 5.80
971 1292 3.333980 TGGAAGGAGAGAGAGAACACCTA 59.666 47.826 0.00 0.00 0.00 3.08
976 1297 1.474879 CGGTGGAAGGAGAGAGAGAAC 59.525 57.143 0.00 0.00 0.00 3.01
980 1301 1.682684 GCCGGTGGAAGGAGAGAGA 60.683 63.158 1.90 0.00 0.00 3.10
982 1303 2.683933 GGCCGGTGGAAGGAGAGA 60.684 66.667 1.90 0.00 0.00 3.10
984 1305 2.285368 ATGGCCGGTGGAAGGAGA 60.285 61.111 1.90 0.00 0.00 3.71
985 1306 2.124570 CATGGCCGGTGGAAGGAG 60.125 66.667 1.90 0.00 0.00 3.69
986 1307 3.727258 CCATGGCCGGTGGAAGGA 61.727 66.667 19.58 0.00 39.12 3.36
987 1308 3.727258 TCCATGGCCGGTGGAAGG 61.727 66.667 23.34 6.41 42.56 3.46
990 1311 3.727258 CCTTCCATGGCCGGTGGA 61.727 66.667 22.13 22.13 43.77 4.02
993 1355 2.285368 TCTCCTTCCATGGCCGGT 60.285 61.111 6.96 0.00 0.00 5.28
996 1358 0.758123 CTCTCTCTCCTTCCATGGCC 59.242 60.000 6.96 0.00 0.00 5.36
1006 1368 0.823356 ATCGGCTGCTCTCTCTCTCC 60.823 60.000 0.00 0.00 0.00 3.71
1012 1374 0.749818 TCTTCGATCGGCTGCTCTCT 60.750 55.000 16.41 0.00 0.00 3.10
1024 1386 1.552337 TGCTGCTTCTCCTTCTTCGAT 59.448 47.619 0.00 0.00 0.00 3.59
1026 1388 1.357907 CTGCTGCTTCTCCTTCTTCG 58.642 55.000 0.00 0.00 0.00 3.79
1105 1467 5.104527 ACAATGCAGCTACCACCTCTATTAA 60.105 40.000 0.00 0.00 0.00 1.40
1179 1541 2.398754 TCTGGATCATGGGGATACGT 57.601 50.000 0.00 0.00 39.99 3.57
1241 1603 3.747854 TGATGCAATGCTTTTCCACAA 57.252 38.095 6.82 0.00 0.00 3.33
1263 1625 1.513158 CGTTCCGCCATCTCTCAGT 59.487 57.895 0.00 0.00 0.00 3.41
1407 1769 4.516323 TGCGATCAGATTTCTCATTCCAA 58.484 39.130 0.00 0.00 0.00 3.53
1412 1774 2.104451 AGGCTGCGATCAGATTTCTCAT 59.896 45.455 0.00 0.00 42.95 2.90
1448 1810 4.259734 CGTTTATTTTCTTGCCGATGAACG 59.740 41.667 0.00 0.00 35.96 3.95
1462 1824 5.064325 GTCGGCTGGATAGTTCGTTTATTTT 59.936 40.000 0.00 0.00 0.00 1.82
1500 1862 3.380004 AGACAACAAACGCCATCTTGAAA 59.620 39.130 0.00 0.00 0.00 2.69
1560 1924 3.184206 TCGATGGTCGAGTGGTCG 58.816 61.111 0.00 0.00 44.82 4.79
1662 2027 3.242804 CCGTTTCCAACTTTAGTTTGCGA 60.243 43.478 0.00 0.00 35.83 5.10
1683 2048 1.832883 TGGGTGTTATGTGTGCATCC 58.167 50.000 0.00 0.00 36.58 3.51
1690 2055 2.159382 GAGGTGGTTGGGTGTTATGTG 58.841 52.381 0.00 0.00 0.00 3.21
1716 2081 2.733956 ACCTGCAGAAAAAGGTGACAA 58.266 42.857 17.39 0.00 45.26 3.18
1728 2093 4.591321 AATTGAGGGATTTACCTGCAGA 57.409 40.909 17.39 0.00 42.10 4.26
1748 2121 6.767456 ACTTGCCATATCCAAAATGTGAAAA 58.233 32.000 0.00 0.00 0.00 2.29
1749 2122 6.357579 ACTTGCCATATCCAAAATGTGAAA 57.642 33.333 0.00 0.00 0.00 2.69
1751 2124 7.473735 TTTACTTGCCATATCCAAAATGTGA 57.526 32.000 0.00 0.00 0.00 3.58
1755 2128 9.165035 CAACATTTTACTTGCCATATCCAAAAT 57.835 29.630 0.00 0.00 0.00 1.82
1793 2173 1.957877 GTGTTCCCATCGTTTCCCAAA 59.042 47.619 0.00 0.00 0.00 3.28
1798 2178 1.223187 ACACGTGTTCCCATCGTTTC 58.777 50.000 17.22 0.00 35.62 2.78
1801 2181 1.670791 AAAACACGTGTTCCCATCGT 58.329 45.000 32.36 13.74 37.25 3.73
1802 2182 2.766970 AAAAACACGTGTTCCCATCG 57.233 45.000 32.36 0.00 37.25 3.84
1879 2262 5.628193 AGTTCAACATTGTCTAGTACGAACG 59.372 40.000 0.00 0.00 36.34 3.95
1907 2290 6.127647 TGGAATTGTGGTCTGCTTTCATTATC 60.128 38.462 0.00 0.00 0.00 1.75
1910 2293 3.896888 TGGAATTGTGGTCTGCTTTCATT 59.103 39.130 0.00 0.00 0.00 2.57
1920 2308 5.576447 AATTTATCCGTGGAATTGTGGTC 57.424 39.130 0.00 0.00 0.00 4.02
1939 2327 2.158856 GGGTCTCCCCGTCGAATAAATT 60.159 50.000 0.00 0.00 42.41 1.82
1978 2366 1.906990 AGCTTTCTTGCTGAGCACAT 58.093 45.000 6.64 0.00 42.33 3.21
2059 2447 3.058085 TGTTTAGTGCGTGTCGTGATCTA 60.058 43.478 0.00 0.00 0.00 1.98
2073 2461 7.675270 GCATTAGCAATCTGAATGTTTAGTG 57.325 36.000 0.00 0.00 41.58 2.74
2189 2578 1.003116 GCATACTGATTTGCTGAGCCG 60.003 52.381 0.23 0.00 35.95 5.52
2213 2602 1.414181 CTGTCTGGGTTGTGTCTGACT 59.586 52.381 9.51 0.00 34.40 3.41
2292 2681 4.555511 GCTGAACTCGATGTTGCTTCTTTT 60.556 41.667 5.20 0.00 39.30 2.27
2309 2698 1.153025 GTAATCCCCGGGGCTGAAC 60.153 63.158 36.68 24.27 34.68 3.18
2321 2710 1.202486 TGGATCCAACGAGCGTAATCC 60.202 52.381 13.46 17.78 34.83 3.01
2324 2713 1.179152 TCTGGATCCAACGAGCGTAA 58.821 50.000 17.00 0.00 0.00 3.18
2367 2756 1.560146 TGTGTTGGGTGTGGACTTGTA 59.440 47.619 0.00 0.00 0.00 2.41
2372 2761 0.951558 GATGTGTGTTGGGTGTGGAC 59.048 55.000 0.00 0.00 0.00 4.02
2405 2805 3.776969 AGGATAGCAGTCTCCACATGAAA 59.223 43.478 0.00 0.00 33.75 2.69
2406 2806 3.133542 CAGGATAGCAGTCTCCACATGAA 59.866 47.826 0.00 0.00 33.75 2.57
2409 2809 2.756907 ACAGGATAGCAGTCTCCACAT 58.243 47.619 0.00 0.00 33.75 3.21
2427 2828 3.953712 TGGAAGACTAGATCGCAAACA 57.046 42.857 0.00 0.00 0.00 2.83
2431 2832 7.230712 TCAGTTATTATGGAAGACTAGATCGCA 59.769 37.037 0.00 0.00 0.00 5.10
2432 2833 7.594714 TCAGTTATTATGGAAGACTAGATCGC 58.405 38.462 0.00 0.00 0.00 4.58
2433 2834 9.004717 TCTCAGTTATTATGGAAGACTAGATCG 57.995 37.037 0.00 0.00 0.00 3.69
2437 2838 9.349713 AGACTCTCAGTTATTATGGAAGACTAG 57.650 37.037 0.00 0.00 0.00 2.57
2455 2856 4.038522 GCCTGCAATGTAGATAGACTCTCA 59.961 45.833 0.00 0.00 35.28 3.27
2456 2857 4.280677 AGCCTGCAATGTAGATAGACTCTC 59.719 45.833 0.00 0.00 35.28 3.20
2479 2882 1.500474 CCCATCCTAGTGGAGAAGCA 58.500 55.000 0.91 0.00 46.91 3.91
2489 2892 3.118261 TGCTCTTTTAGTGCCCATCCTAG 60.118 47.826 0.00 0.00 34.08 3.02
2594 2997 8.003784 CGAAATTGGTCTTGCAAAATAAACTTC 58.996 33.333 0.00 0.00 0.00 3.01
2607 3010 2.030274 GGTGTTCCCGAAATTGGTCTTG 60.030 50.000 0.00 0.00 0.00 3.02
2608 3011 2.235891 GGTGTTCCCGAAATTGGTCTT 58.764 47.619 0.00 0.00 0.00 3.01
2639 3042 3.267860 GGAAGCGCGATCAGCTGG 61.268 66.667 12.10 0.00 45.31 4.85
2642 3045 4.873129 TCCGGAAGCGCGATCAGC 62.873 66.667 12.10 0.00 43.95 4.26
2645 3048 3.262686 GGTTCCGGAAGCGCGATC 61.263 66.667 28.91 10.26 0.00 3.69
2654 3057 2.613474 CGACACCTTTTATGGTTCCGGA 60.613 50.000 0.00 0.00 38.45 5.14
2664 3067 1.375013 GAGCCGCCGACACCTTTTA 60.375 57.895 0.00 0.00 0.00 1.52
2713 3116 0.882474 TTTTTATTGACCACGGGCGG 59.118 50.000 0.00 0.00 0.00 6.13
2740 3149 2.290641 GACATGTATGCGGAAATGGACC 59.709 50.000 0.00 0.00 0.00 4.46
2749 3158 3.684305 TGAAACTTCAGACATGTATGCGG 59.316 43.478 15.67 12.19 32.50 5.69
2750 3159 4.926860 TGAAACTTCAGACATGTATGCG 57.073 40.909 15.67 11.11 32.50 4.73
2769 3179 1.885887 GCCCTGCATAACAACACTTGA 59.114 47.619 0.00 0.00 0.00 3.02
2775 3185 0.243636 GTGTGGCCCTGCATAACAAC 59.756 55.000 0.00 0.00 0.00 3.32
2777 3187 0.178978 TTGTGTGGCCCTGCATAACA 60.179 50.000 0.00 0.00 0.00 2.41
2778 3188 1.135024 CATTGTGTGGCCCTGCATAAC 60.135 52.381 0.00 0.00 0.00 1.89
2788 3198 1.200020 GGTGCTTCTACATTGTGTGGC 59.800 52.381 0.00 0.00 0.00 5.01
2809 3219 1.378762 GTGCAGGGGGAGTTTGCTA 59.621 57.895 0.00 0.00 38.60 3.49
2814 3224 1.004745 CAACTATGTGCAGGGGGAGTT 59.995 52.381 0.00 0.00 0.00 3.01
2819 3229 1.281867 TCTTCCAACTATGTGCAGGGG 59.718 52.381 0.00 0.00 0.00 4.79
2823 3233 2.040278 AGCCTTCTTCCAACTATGTGCA 59.960 45.455 0.00 0.00 0.00 4.57
2875 3285 0.309612 CCACTGGTTTAGCGCGTTTT 59.690 50.000 8.43 0.00 0.00 2.43
2884 3294 2.039348 GGTAGGCAAGACCACTGGTTTA 59.961 50.000 1.13 0.00 43.14 2.01
2902 3312 2.345760 GGAGAAGTGGTCGGCGGTA 61.346 63.158 7.21 0.00 0.00 4.02
2914 3324 3.195825 CCCTAGTAGGTGTTGTGGAGAAG 59.804 52.174 15.26 0.00 31.93 2.85
2917 3327 1.831736 CCCCTAGTAGGTGTTGTGGAG 59.168 57.143 15.26 0.00 31.93 3.86
2943 3353 1.267932 CGTCGTCTATCCTTGGTCGTC 60.268 57.143 0.00 0.00 0.00 4.20
2955 3365 1.378882 ATTACCTGGCGCGTCGTCTA 61.379 55.000 6.09 0.00 30.55 2.59
3018 3428 6.805713 ACTTGCATTGGGTTTACATATAAGC 58.194 36.000 0.00 0.00 0.00 3.09
3021 3431 8.988546 ATGTACTTGCATTGGGTTTACATATA 57.011 30.769 0.00 0.00 0.00 0.86
3048 3458 6.044046 TGAGCATTGGTGATTTAATTGCATC 58.956 36.000 0.00 0.00 0.00 3.91
3049 3459 5.979993 TGAGCATTGGTGATTTAATTGCAT 58.020 33.333 0.00 0.00 0.00 3.96
3073 3483 2.165641 AGTTCGAATGATGGTGCGTCTA 59.834 45.455 0.00 0.00 0.00 2.59
3109 3519 2.474712 GCGTACTGGCTTCGTTGC 59.525 61.111 0.00 0.00 0.00 4.17
3140 3550 2.798445 AAATCGGGGTGGCCTTTCCC 62.798 60.000 18.59 18.59 42.73 3.97
3166 3576 2.290641 GAGTGTGTCTTTGTCGCCAAAT 59.709 45.455 0.00 0.00 39.72 2.32


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.