Multiple sequence alignment - TraesCS2B01G613900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G613900 chr2B 100.000 3026 0 0 1 3026 793036075 793033050 0.000000e+00 5589.0
1 TraesCS2B01G613900 chr2B 84.447 823 120 5 1211 2029 792876972 792877790 0.000000e+00 804.0
2 TraesCS2B01G613900 chr2B 82.888 824 135 3 1210 2030 792763167 792763987 0.000000e+00 736.0
3 TraesCS2B01G613900 chr2B 79.492 590 121 0 1398 1987 793169143 793168554 1.300000e-113 420.0
4 TraesCS2B01G613900 chr2B 82.927 410 56 9 996 1395 793142146 793141741 1.030000e-94 357.0
5 TraesCS2B01G613900 chr2B 83.721 215 35 0 1000 1214 793169822 793169608 1.420000e-48 204.0
6 TraesCS2B01G613900 chr2A 89.964 2222 119 37 40 2204 769143950 769146124 0.000000e+00 2772.0
7 TraesCS2B01G613900 chr2A 82.851 863 130 11 1210 2066 769473665 769472815 0.000000e+00 758.0
8 TraesCS2B01G613900 chr2A 78.988 771 138 18 1211 1972 769094711 769095466 3.480000e-139 505.0
9 TraesCS2B01G613900 chr2A 79.022 634 125 4 1398 2030 769004014 769004640 7.750000e-116 427.0
10 TraesCS2B01G613900 chr2A 79.664 595 117 4 1398 1990 769020871 769021463 2.790000e-115 425.0
11 TraesCS2B01G613900 chr2A 84.428 411 50 8 996 1396 769020353 769020759 2.830000e-105 392.0
12 TraesCS2B01G613900 chr2A 84.091 220 26 7 2193 2408 769146224 769146438 1.420000e-48 204.0
13 TraesCS2B01G613900 chr2A 82.569 218 32 4 1000 1214 769003109 769003323 1.430000e-43 187.0
14 TraesCS2B01G613900 chr2A 76.857 350 41 28 878 1214 769094271 769094593 8.680000e-36 161.0
15 TraesCS2B01G613900 chr2A 76.420 352 41 25 881 1214 769474072 769473745 5.230000e-33 152.0
16 TraesCS2B01G613900 chr2A 98.214 56 1 0 2416 2471 49422077 49422132 6.900000e-17 99.0
17 TraesCS2B01G613900 chr2D 93.055 1843 82 15 364 2203 644015789 644017588 0.000000e+00 2652.0
18 TraesCS2B01G613900 chr2D 79.930 857 155 12 1212 2066 644219972 644219131 5.540000e-172 614.0
19 TraesCS2B01G613900 chr2D 78.822 628 125 4 1398 2024 643879102 643879722 1.680000e-112 416.0
20 TraesCS2B01G613900 chr2D 85.330 409 48 7 996 1395 643901087 643901492 2.170000e-111 412.0
21 TraesCS2B01G613900 chr2D 82.380 437 63 7 1634 2066 644185379 644184953 4.770000e-98 368.0
22 TraesCS2B01G613900 chr2D 90.040 251 14 5 117 367 644015523 644015762 6.300000e-82 315.0
23 TraesCS2B01G613900 chr2D 84.862 218 27 5 1000 1214 643878406 643878620 6.570000e-52 215.0
24 TraesCS2B01G613900 chr2D 76.899 316 59 13 1087 1395 643468531 643468223 1.870000e-37 167.0
25 TraesCS2B01G613900 chr2D 89.844 128 13 0 1268 1395 643878819 643878946 6.710000e-37 165.0
26 TraesCS2B01G613900 chr2D 76.543 324 59 15 1080 1395 643640462 643640776 8.680000e-36 161.0
27 TraesCS2B01G613900 chr2D 76.757 370 35 30 881 1227 644220394 644220053 3.120000e-35 159.0
28 TraesCS2B01G613900 chr2D 82.199 191 26 4 373 555 244233021 244233211 1.120000e-34 158.0
29 TraesCS2B01G613900 chr2D 74.171 422 87 15 1170 1576 643330490 643330904 4.040000e-34 156.0
30 TraesCS2B01G613900 chr2D 73.718 468 94 23 1165 1613 643435327 643435784 4.040000e-34 156.0
31 TraesCS2B01G613900 chr3A 98.427 572 8 1 2456 3026 492322862 492322291 0.000000e+00 1005.0
32 TraesCS2B01G613900 chr3A 98.214 56 1 0 2416 2471 31817488 31817543 6.900000e-17 99.0
33 TraesCS2B01G613900 chr1A 98.036 560 11 0 2467 3026 40987809 40988368 0.000000e+00 974.0
34 TraesCS2B01G613900 chr6B 93.739 559 28 7 2471 3026 87347581 87347027 0.000000e+00 832.0
35 TraesCS2B01G613900 chr6B 89.123 570 51 9 2460 3026 124536999 124537560 0.000000e+00 699.0
36 TraesCS2B01G613900 chr6B 95.238 63 2 1 2410 2471 199762957 199762895 6.900000e-17 99.0
37 TraesCS2B01G613900 chr3B 91.327 565 39 10 2465 3026 539661468 539662025 0.000000e+00 763.0
38 TraesCS2B01G613900 chr3B 90.278 72 3 4 2403 2471 588418159 588418229 1.160000e-14 91.6
39 TraesCS2B01G613900 chr1B 90.175 570 38 16 2464 3026 641612482 641613040 0.000000e+00 726.0
40 TraesCS2B01G613900 chr1B 88.929 560 52 9 2471 3026 8083309 8082756 0.000000e+00 682.0
41 TraesCS2B01G613900 chr7B 87.809 566 50 15 2471 3026 533622142 533621586 0.000000e+00 645.0
42 TraesCS2B01G613900 chr3D 87.611 565 52 17 2470 3026 392033940 392034494 9.150000e-180 640.0
43 TraesCS2B01G613900 chr3D 72.894 273 52 17 1355 1613 532205434 532205170 1.160000e-09 75.0
44 TraesCS2B01G613900 chr6D 96.825 63 1 1 2410 2471 110881517 110881455 1.480000e-18 104.0
45 TraesCS2B01G613900 chr5A 100.000 55 0 0 2417 2471 480631541 480631487 5.340000e-18 102.0
46 TraesCS2B01G613900 chr7D 98.214 56 1 0 2416 2471 33478453 33478508 6.900000e-17 99.0
47 TraesCS2B01G613900 chr7A 93.846 65 4 0 2407 2471 34046182 34046246 6.900000e-17 99.0
48 TraesCS2B01G613900 chr6A 95.238 63 2 1 2410 2471 135244499 135244437 6.900000e-17 99.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G613900 chr2B 793033050 793036075 3025 True 5589.000000 5589 100.000000 1 3026 1 chr2B.!!$R1 3025
1 TraesCS2B01G613900 chr2B 792876972 792877790 818 False 804.000000 804 84.447000 1211 2029 1 chr2B.!!$F2 818
2 TraesCS2B01G613900 chr2B 792763167 792763987 820 False 736.000000 736 82.888000 1210 2030 1 chr2B.!!$F1 820
3 TraesCS2B01G613900 chr2B 793168554 793169822 1268 True 312.000000 420 81.606500 1000 1987 2 chr2B.!!$R3 987
4 TraesCS2B01G613900 chr2A 769143950 769146438 2488 False 1488.000000 2772 87.027500 40 2408 2 chr2A.!!$F5 2368
5 TraesCS2B01G613900 chr2A 769472815 769474072 1257 True 455.000000 758 79.635500 881 2066 2 chr2A.!!$R1 1185
6 TraesCS2B01G613900 chr2A 769020353 769021463 1110 False 408.500000 425 82.046000 996 1990 2 chr2A.!!$F3 994
7 TraesCS2B01G613900 chr2A 769094271 769095466 1195 False 333.000000 505 77.922500 878 1972 2 chr2A.!!$F4 1094
8 TraesCS2B01G613900 chr2A 769003109 769004640 1531 False 307.000000 427 80.795500 1000 2030 2 chr2A.!!$F2 1030
9 TraesCS2B01G613900 chr2D 644015523 644017588 2065 False 1483.500000 2652 91.547500 117 2203 2 chr2D.!!$F7 2086
10 TraesCS2B01G613900 chr2D 644219131 644220394 1263 True 386.500000 614 78.343500 881 2066 2 chr2D.!!$R3 1185
11 TraesCS2B01G613900 chr2D 643878406 643879722 1316 False 265.333333 416 84.509333 1000 2024 3 chr2D.!!$F6 1024
12 TraesCS2B01G613900 chr3A 492322291 492322862 571 True 1005.000000 1005 98.427000 2456 3026 1 chr3A.!!$R1 570
13 TraesCS2B01G613900 chr1A 40987809 40988368 559 False 974.000000 974 98.036000 2467 3026 1 chr1A.!!$F1 559
14 TraesCS2B01G613900 chr6B 87347027 87347581 554 True 832.000000 832 93.739000 2471 3026 1 chr6B.!!$R1 555
15 TraesCS2B01G613900 chr6B 124536999 124537560 561 False 699.000000 699 89.123000 2460 3026 1 chr6B.!!$F1 566
16 TraesCS2B01G613900 chr3B 539661468 539662025 557 False 763.000000 763 91.327000 2465 3026 1 chr3B.!!$F1 561
17 TraesCS2B01G613900 chr1B 641612482 641613040 558 False 726.000000 726 90.175000 2464 3026 1 chr1B.!!$F1 562
18 TraesCS2B01G613900 chr1B 8082756 8083309 553 True 682.000000 682 88.929000 2471 3026 1 chr1B.!!$R1 555
19 TraesCS2B01G613900 chr7B 533621586 533622142 556 True 645.000000 645 87.809000 2471 3026 1 chr7B.!!$R1 555
20 TraesCS2B01G613900 chr3D 392033940 392034494 554 False 640.000000 640 87.611000 2470 3026 1 chr3D.!!$F1 556

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
20 21 0.039764 AGTCTGTCCGATCACCTCCA 59.960 55.0 0.00 0.0 0.0 3.86 F
951 1008 0.107508 CCCTCCCTCAGTCGTACGTA 60.108 60.0 16.05 0.0 0.0 3.57 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1648 2348 2.048127 AGAGGTCGCGAACTTGCC 60.048 61.111 30.00 16.0 0.00 4.52 R
2385 3204 0.026285 GTATGCATTGACCGTCGCAC 59.974 55.000 3.54 0.0 37.17 5.34 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
19 20 0.457851 CAGTCTGTCCGATCACCTCC 59.542 60.000 0.00 0.00 0.00 4.30
20 21 0.039764 AGTCTGTCCGATCACCTCCA 59.960 55.000 0.00 0.00 0.00 3.86
21 22 0.457851 GTCTGTCCGATCACCTCCAG 59.542 60.000 0.00 0.00 0.00 3.86
22 23 1.142748 CTGTCCGATCACCTCCAGC 59.857 63.158 0.00 0.00 0.00 4.85
23 24 2.105128 GTCCGATCACCTCCAGCG 59.895 66.667 0.00 0.00 0.00 5.18
24 25 3.147595 TCCGATCACCTCCAGCGG 61.148 66.667 0.00 0.00 43.11 5.52
25 26 3.461773 CCGATCACCTCCAGCGGT 61.462 66.667 0.00 0.00 37.35 5.68
26 27 2.125326 CCGATCACCTCCAGCGGTA 61.125 63.158 0.00 0.00 37.35 4.02
27 28 1.360551 CGATCACCTCCAGCGGTAG 59.639 63.158 0.00 0.00 34.94 3.18
28 29 1.068250 GATCACCTCCAGCGGTAGC 59.932 63.158 0.00 0.00 45.58 3.58
101 102 1.134189 TGCTGATGATGCTGAAGGAGG 60.134 52.381 0.00 0.00 0.00 4.30
102 103 1.140452 GCTGATGATGCTGAAGGAGGA 59.860 52.381 0.00 0.00 0.00 3.71
103 104 2.807472 GCTGATGATGCTGAAGGAGGAG 60.807 54.545 0.00 0.00 0.00 3.69
104 105 1.767088 TGATGATGCTGAAGGAGGAGG 59.233 52.381 0.00 0.00 0.00 4.30
105 106 2.045524 GATGATGCTGAAGGAGGAGGA 58.954 52.381 0.00 0.00 0.00 3.71
106 107 1.493861 TGATGCTGAAGGAGGAGGAG 58.506 55.000 0.00 0.00 0.00 3.69
107 108 0.758123 GATGCTGAAGGAGGAGGAGG 59.242 60.000 0.00 0.00 0.00 4.30
151 152 5.332743 AGCCAATGACTTTTTGGATAGGAA 58.667 37.500 6.63 0.00 45.35 3.36
172 173 0.818938 TAGGAAAGCACGCGTCCATA 59.181 50.000 9.86 0.00 33.57 2.74
173 174 0.739813 AGGAAAGCACGCGTCCATAC 60.740 55.000 9.86 0.71 33.57 2.39
174 175 1.702491 GGAAAGCACGCGTCCATACC 61.702 60.000 9.86 7.19 0.00 2.73
175 176 2.020836 GAAAGCACGCGTCCATACCG 62.021 60.000 9.86 0.00 0.00 4.02
182 183 2.244651 GCGTCCATACCGACCATGC 61.245 63.158 0.00 0.00 0.00 4.06
228 229 2.973224 CGTACGTACGTGGCCAATATAC 59.027 50.000 33.95 15.59 44.13 1.47
241 242 4.574828 GGCCAATATACTAGTGTTGTGGTG 59.425 45.833 17.21 3.99 0.00 4.17
283 290 1.000717 GCCAACTTTCAGCGGCTTTAA 60.001 47.619 0.00 0.00 41.50 1.52
346 353 4.142881 CGAGAGATAAGACGACACTTGACA 60.143 45.833 0.00 0.00 0.00 3.58
353 360 0.463116 ACGACACTTGACACCCAACC 60.463 55.000 0.00 0.00 0.00 3.77
360 367 0.684805 TTGACACCCAACCAACCACC 60.685 55.000 0.00 0.00 0.00 4.61
368 375 1.214424 CCAACCAACCACCCCTATAGG 59.786 57.143 12.27 12.27 0.00 2.57
369 376 0.924090 AACCAACCACCCCTATAGGC 59.076 55.000 13.85 0.00 0.00 3.93
372 379 2.089581 ACCAACCACCCCTATAGGCTAT 60.090 50.000 13.85 12.41 0.00 2.97
373 380 3.145280 ACCAACCACCCCTATAGGCTATA 59.855 47.826 13.85 13.39 0.00 1.31
374 381 3.775316 CCAACCACCCCTATAGGCTATAG 59.225 52.174 27.50 27.50 38.27 1.31
375 382 3.117552 ACCACCCCTATAGGCTATAGC 57.882 52.381 28.57 16.78 37.42 2.97
379 415 4.896482 CCACCCCTATAGGCTATAGCTTAG 59.104 50.000 28.57 19.82 41.70 2.18
383 419 5.663556 CCCCTATAGGCTATAGCTTAGCTTT 59.336 44.000 28.57 7.30 40.44 3.51
385 421 6.155393 CCCTATAGGCTATAGCTTAGCTTTGT 59.845 42.308 28.57 7.54 40.44 2.83
409 445 4.460263 AGCCGCCATTAACTAATCAATCA 58.540 39.130 0.00 0.00 0.00 2.57
424 460 2.094182 TCAATCACTCAACCCGTAGCTC 60.094 50.000 0.00 0.00 0.00 4.09
441 477 1.935300 GCTCGGTGTCGTTCAGAATGT 60.935 52.381 2.18 0.00 35.93 2.71
456 492 7.201574 CGTTCAGAATGTTTCCATATCCGTTAA 60.202 37.037 0.00 0.00 37.40 2.01
457 493 7.786178 TCAGAATGTTTCCATATCCGTTAAG 57.214 36.000 0.00 0.00 37.40 1.85
458 494 7.335627 TCAGAATGTTTCCATATCCGTTAAGT 58.664 34.615 0.00 0.00 37.40 2.24
459 495 8.479689 TCAGAATGTTTCCATATCCGTTAAGTA 58.520 33.333 0.00 0.00 37.40 2.24
532 568 2.034507 GCAAGCACGTACTCGATTCATC 60.035 50.000 0.00 0.00 40.62 2.92
566 602 4.907879 CAATCTATGCCACTTTCTTCCC 57.092 45.455 0.00 0.00 0.00 3.97
663 711 0.241481 AGTTCGAGGAAGAGACACGC 59.759 55.000 0.00 0.00 0.00 5.34
697 749 1.146263 CCTACCCGGCCAGTTGATC 59.854 63.158 2.24 0.00 0.00 2.92
701 753 1.452108 CCCGGCCAGTTGATCTTCC 60.452 63.158 2.24 0.00 0.00 3.46
765 817 8.055790 CCCCTTTAATTTCCAATTAGTCTCTCT 58.944 37.037 0.00 0.00 0.00 3.10
766 818 9.114952 CCCTTTAATTTCCAATTAGTCTCTCTC 57.885 37.037 0.00 0.00 0.00 3.20
807 859 9.614792 GTCTTCTCTCTTCTCTAGTTAATCTCT 57.385 37.037 0.00 0.00 0.00 3.10
810 862 9.841295 TTCTCTCTTCTCTAGTTAATCTCTACC 57.159 37.037 0.00 0.00 0.00 3.18
870 926 1.516423 GGAGGTGACTAGCCGTTCC 59.484 63.158 0.00 0.00 44.43 3.62
871 927 1.516423 GAGGTGACTAGCCGTTCCC 59.484 63.158 0.00 0.00 44.43 3.97
872 928 1.957765 GAGGTGACTAGCCGTTCCCC 61.958 65.000 0.00 0.00 44.43 4.81
873 929 1.988406 GGTGACTAGCCGTTCCCCT 60.988 63.158 0.00 0.00 0.00 4.79
874 930 1.551019 GGTGACTAGCCGTTCCCCTT 61.551 60.000 0.00 0.00 0.00 3.95
875 931 0.323957 GTGACTAGCCGTTCCCCTTT 59.676 55.000 0.00 0.00 0.00 3.11
938 995 4.862823 CGACCCTCCCTCCCTCCC 62.863 77.778 0.00 0.00 0.00 4.30
939 996 3.369388 GACCCTCCCTCCCTCCCT 61.369 72.222 0.00 0.00 0.00 4.20
941 998 3.368501 CCCTCCCTCCCTCCCTCA 61.369 72.222 0.00 0.00 0.00 3.86
942 999 2.285180 CCTCCCTCCCTCCCTCAG 59.715 72.222 0.00 0.00 0.00 3.35
943 1000 2.641746 CCTCCCTCCCTCCCTCAGT 61.642 68.421 0.00 0.00 0.00 3.41
944 1001 1.075600 CTCCCTCCCTCCCTCAGTC 60.076 68.421 0.00 0.00 0.00 3.51
945 1002 2.443016 CCCTCCCTCCCTCAGTCG 60.443 72.222 0.00 0.00 0.00 4.18
946 1003 2.360980 CCTCCCTCCCTCAGTCGT 59.639 66.667 0.00 0.00 0.00 4.34
947 1004 1.613610 CCTCCCTCCCTCAGTCGTA 59.386 63.158 0.00 0.00 0.00 3.43
948 1005 0.752376 CCTCCCTCCCTCAGTCGTAC 60.752 65.000 0.00 0.00 0.00 3.67
949 1006 1.077930 TCCCTCCCTCAGTCGTACG 60.078 63.158 9.53 9.53 0.00 3.67
950 1007 1.378250 CCCTCCCTCAGTCGTACGT 60.378 63.158 16.05 0.00 0.00 3.57
951 1008 0.107508 CCCTCCCTCAGTCGTACGTA 60.108 60.000 16.05 0.00 0.00 3.57
952 1009 1.297664 CCTCCCTCAGTCGTACGTAG 58.702 60.000 16.05 8.66 0.00 3.51
953 1010 0.656785 CTCCCTCAGTCGTACGTAGC 59.343 60.000 16.05 7.12 0.00 3.58
954 1011 0.251354 TCCCTCAGTCGTACGTAGCT 59.749 55.000 16.05 9.32 0.00 3.32
955 1012 1.482182 TCCCTCAGTCGTACGTAGCTA 59.518 52.381 16.05 0.00 0.00 3.32
1501 2200 1.244019 GGCGCCCTTCTTCAATGTGT 61.244 55.000 18.11 0.00 0.00 3.72
1510 2209 1.067846 TCTTCAATGTGTCGACCCTCG 60.068 52.381 14.12 0.00 42.10 4.63
1855 2555 2.125512 CCCGCTTCTCCCTCAACG 60.126 66.667 0.00 0.00 0.00 4.10
1917 2617 1.067295 TGAGCAACATGGACCTCCTT 58.933 50.000 0.00 0.00 36.82 3.36
2030 2733 1.517257 CCGCCGACATGTGAGAGAC 60.517 63.158 1.15 0.00 0.00 3.36
2031 2734 1.212751 CGCCGACATGTGAGAGACA 59.787 57.895 1.15 0.00 39.53 3.41
2066 2770 4.517832 TGTAACGTAGTGTGAGTGAGTGAT 59.482 41.667 0.00 0.00 45.00 3.06
2125 2829 5.049474 TGTGCAAGCATGTTGTCTTAGTTAG 60.049 40.000 0.00 0.00 0.00 2.34
2126 2830 5.049405 GTGCAAGCATGTTGTCTTAGTTAGT 60.049 40.000 0.00 0.00 0.00 2.24
2127 2831 6.147164 GTGCAAGCATGTTGTCTTAGTTAGTA 59.853 38.462 0.00 0.00 0.00 1.82
2169 2873 1.297664 ATGCATCTTCTTCTCAGCGC 58.702 50.000 0.00 0.00 0.00 5.92
2207 3022 4.801330 AACATCGTAATGTCTGACTGGA 57.199 40.909 9.51 0.07 45.48 3.86
2224 3039 4.583871 ACTGGATCAGCTTTAAGACCAAG 58.416 43.478 0.00 0.00 34.37 3.61
2239 3055 3.808174 AGACCAAGAGAAACGCAAAGTAC 59.192 43.478 0.00 0.00 0.00 2.73
2240 3056 3.537580 ACCAAGAGAAACGCAAAGTACA 58.462 40.909 0.00 0.00 0.00 2.90
2241 3057 4.134563 ACCAAGAGAAACGCAAAGTACAT 58.865 39.130 0.00 0.00 0.00 2.29
2249 3065 3.878086 ACGCAAAGTACATTGTCACTG 57.122 42.857 12.07 1.48 32.80 3.66
2253 3069 4.260579 CGCAAAGTACATTGTCACTGTCAA 60.261 41.667 12.07 0.00 32.80 3.18
2255 3071 6.347321 CGCAAAGTACATTGTCACTGTCAATA 60.347 38.462 12.07 0.00 34.34 1.90
2257 3073 8.664798 GCAAAGTACATTGTCACTGTCAATATA 58.335 33.333 12.07 0.00 34.34 0.86
2264 3080 8.248253 ACATTGTCACTGTCAATATAACGTCTA 58.752 33.333 1.79 0.00 34.34 2.59
2267 3083 7.470079 TGTCACTGTCAATATAACGTCTAGTC 58.530 38.462 0.00 0.00 0.00 2.59
2268 3084 7.120138 TGTCACTGTCAATATAACGTCTAGTCA 59.880 37.037 0.00 0.00 0.00 3.41
2269 3085 7.966753 GTCACTGTCAATATAACGTCTAGTCAA 59.033 37.037 0.00 0.00 0.00 3.18
2299 3118 7.956420 AAAAGAAATATGTCAGTGTCACGTA 57.044 32.000 0.00 0.00 0.00 3.57
2304 3123 3.728076 ATGTCAGTGTCACGTACTGTT 57.272 42.857 14.84 1.82 44.49 3.16
2345 3164 1.373435 CGGATAATTAGGCCGCCCA 59.627 57.895 14.29 0.00 38.46 5.36
2380 3199 3.898517 TCTCTCACTGTCAGTGTTACG 57.101 47.619 27.97 16.64 46.03 3.18
2381 3200 3.211865 TCTCTCACTGTCAGTGTTACGT 58.788 45.455 27.97 0.00 46.03 3.57
2382 3201 4.383173 TCTCTCACTGTCAGTGTTACGTA 58.617 43.478 27.97 10.56 46.03 3.57
2383 3202 4.212847 TCTCTCACTGTCAGTGTTACGTAC 59.787 45.833 27.97 0.00 46.03 3.67
2385 3204 4.024302 TCTCACTGTCAGTGTTACGTACTG 60.024 45.833 27.97 10.15 46.03 2.74
2386 3205 3.628942 TCACTGTCAGTGTTACGTACTGT 59.371 43.478 27.97 3.48 46.03 3.55
2387 3206 3.729217 CACTGTCAGTGTTACGTACTGTG 59.271 47.826 22.62 11.10 44.49 3.66
2388 3207 2.724690 CTGTCAGTGTTACGTACTGTGC 59.275 50.000 14.84 10.50 44.49 4.57
2399 3218 0.713883 GTACTGTGCGACGGTCAATG 59.286 55.000 9.10 0.00 38.84 2.82
2421 3240 3.921021 GCATACAGCATACGTGATACTCC 59.079 47.826 0.00 0.00 44.79 3.85
2422 3241 4.486090 CATACAGCATACGTGATACTCCC 58.514 47.826 0.00 0.00 0.00 4.30
2423 3242 2.667470 ACAGCATACGTGATACTCCCT 58.333 47.619 0.00 0.00 0.00 4.20
2424 3243 2.623889 ACAGCATACGTGATACTCCCTC 59.376 50.000 0.00 0.00 0.00 4.30
2425 3244 2.029828 CAGCATACGTGATACTCCCTCC 60.030 54.545 0.00 0.00 0.00 4.30
2426 3245 1.068472 GCATACGTGATACTCCCTCCG 60.068 57.143 0.00 0.00 0.00 4.63
2427 3246 2.228059 CATACGTGATACTCCCTCCGT 58.772 52.381 0.00 0.00 0.00 4.69
2428 3247 1.959042 TACGTGATACTCCCTCCGTC 58.041 55.000 0.00 0.00 0.00 4.79
2429 3248 0.750911 ACGTGATACTCCCTCCGTCC 60.751 60.000 0.00 0.00 0.00 4.79
2430 3249 1.783031 CGTGATACTCCCTCCGTCCG 61.783 65.000 0.00 0.00 0.00 4.79
2431 3250 1.152819 TGATACTCCCTCCGTCCGG 60.153 63.158 0.00 0.00 0.00 5.14
2432 3251 1.150081 GATACTCCCTCCGTCCGGA 59.850 63.158 0.00 0.00 42.90 5.14
2433 3252 0.466922 GATACTCCCTCCGTCCGGAA 60.467 60.000 5.23 0.00 44.66 4.30
2434 3253 0.032813 ATACTCCCTCCGTCCGGAAA 60.033 55.000 5.23 0.00 44.66 3.13
2435 3254 0.032813 TACTCCCTCCGTCCGGAAAT 60.033 55.000 5.23 0.00 44.66 2.17
2436 3255 0.032813 ACTCCCTCCGTCCGGAAATA 60.033 55.000 5.23 0.00 44.66 1.40
2437 3256 0.388294 CTCCCTCCGTCCGGAAATAC 59.612 60.000 5.23 0.00 44.66 1.89
2438 3257 0.032813 TCCCTCCGTCCGGAAATACT 60.033 55.000 5.23 0.00 44.66 2.12
2439 3258 0.828677 CCCTCCGTCCGGAAATACTT 59.171 55.000 5.23 0.00 44.66 2.24
2440 3259 1.472728 CCCTCCGTCCGGAAATACTTG 60.473 57.143 5.23 0.00 44.66 3.16
2441 3260 1.206371 CCTCCGTCCGGAAATACTTGT 59.794 52.381 5.23 0.00 44.66 3.16
2442 3261 2.537401 CTCCGTCCGGAAATACTTGTC 58.463 52.381 5.23 0.00 44.66 3.18
2443 3262 1.135315 TCCGTCCGGAAATACTTGTCG 60.135 52.381 5.23 1.25 42.05 4.35
2444 3263 1.274596 CGTCCGGAAATACTTGTCGG 58.725 55.000 5.23 0.00 41.80 4.79
2445 3264 1.135315 CGTCCGGAAATACTTGTCGGA 60.135 52.381 5.23 0.00 46.06 4.55
2446 3265 2.953466 TCCGGAAATACTTGTCGGAG 57.047 50.000 0.00 0.00 43.84 4.63
2447 3266 2.449464 TCCGGAAATACTTGTCGGAGA 58.551 47.619 0.00 0.00 43.84 3.71
2448 3267 2.827322 TCCGGAAATACTTGTCGGAGAA 59.173 45.455 0.00 0.00 43.84 2.87
2449 3268 3.258872 TCCGGAAATACTTGTCGGAGAAA 59.741 43.478 0.00 0.00 43.84 2.52
2450 3269 4.081309 TCCGGAAATACTTGTCGGAGAAAT 60.081 41.667 0.00 0.00 43.84 2.17
2451 3270 4.034048 CCGGAAATACTTGTCGGAGAAATG 59.966 45.833 0.00 0.00 42.94 2.32
2452 3271 4.034048 CGGAAATACTTGTCGGAGAAATGG 59.966 45.833 0.00 0.00 39.69 3.16
2453 3272 5.183228 GGAAATACTTGTCGGAGAAATGGA 58.817 41.667 0.00 0.00 39.69 3.41
2454 3273 5.823045 GGAAATACTTGTCGGAGAAATGGAT 59.177 40.000 0.00 0.00 39.69 3.41
2462 3281 8.028938 ACTTGTCGGAGAAATGGATAAAAATTG 58.971 33.333 0.00 0.00 39.69 2.32
2465 3284 8.190122 TGTCGGAGAAATGGATAAAAATTGATG 58.810 33.333 0.00 0.00 39.69 3.07
2467 3286 9.402320 TCGGAGAAATGGATAAAAATTGATGTA 57.598 29.630 0.00 0.00 0.00 2.29
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 0.457851 GGAGGTGATCGGACAGACTG 59.542 60.000 0.00 0.00 0.00 3.51
4 5 1.142748 GCTGGAGGTGATCGGACAG 59.857 63.158 0.00 0.00 0.00 3.51
6 7 2.105128 CGCTGGAGGTGATCGGAC 59.895 66.667 0.00 0.00 0.00 4.79
8 9 2.076622 CTACCGCTGGAGGTGATCGG 62.077 65.000 6.28 0.00 45.54 4.18
9 10 1.360551 CTACCGCTGGAGGTGATCG 59.639 63.158 6.28 0.00 45.54 3.69
10 11 1.068250 GCTACCGCTGGAGGTGATC 59.932 63.158 6.28 0.00 45.54 2.92
11 12 1.381872 AGCTACCGCTGGAGGTGAT 60.382 57.895 6.28 0.00 46.86 3.06
12 13 2.037367 AGCTACCGCTGGAGGTGA 59.963 61.111 6.28 0.00 46.86 4.02
21 22 0.320421 TGTCCACTGAAAGCTACCGC 60.320 55.000 0.00 0.00 37.60 5.68
22 23 2.002586 CATGTCCACTGAAAGCTACCG 58.997 52.381 0.00 0.00 37.60 4.02
23 24 1.740025 GCATGTCCACTGAAAGCTACC 59.260 52.381 0.00 0.00 37.60 3.18
24 25 2.426522 TGCATGTCCACTGAAAGCTAC 58.573 47.619 0.00 0.00 37.60 3.58
25 26 2.857186 TGCATGTCCACTGAAAGCTA 57.143 45.000 0.00 0.00 37.60 3.32
26 27 1.985473 TTGCATGTCCACTGAAAGCT 58.015 45.000 0.00 0.00 37.60 3.74
27 28 2.294233 TCTTTGCATGTCCACTGAAAGC 59.706 45.455 0.00 0.00 37.60 3.51
28 29 4.276678 TCTTCTTTGCATGTCCACTGAAAG 59.723 41.667 0.00 0.00 42.29 2.62
29 30 4.206375 TCTTCTTTGCATGTCCACTGAAA 58.794 39.130 0.00 0.00 0.00 2.69
30 31 3.819368 TCTTCTTTGCATGTCCACTGAA 58.181 40.909 0.00 0.00 0.00 3.02
31 32 3.490439 TCTTCTTTGCATGTCCACTGA 57.510 42.857 0.00 0.00 0.00 3.41
32 33 3.316029 TGTTCTTCTTTGCATGTCCACTG 59.684 43.478 0.00 0.00 0.00 3.66
33 34 3.554934 TGTTCTTCTTTGCATGTCCACT 58.445 40.909 0.00 0.00 0.00 4.00
34 35 3.988379 TGTTCTTCTTTGCATGTCCAC 57.012 42.857 0.00 0.00 0.00 4.02
35 36 3.953612 ACTTGTTCTTCTTTGCATGTCCA 59.046 39.130 0.00 0.00 0.00 4.02
36 37 4.276926 AGACTTGTTCTTCTTTGCATGTCC 59.723 41.667 0.00 0.00 36.98 4.02
37 38 5.429957 AGACTTGTTCTTCTTTGCATGTC 57.570 39.130 0.00 0.00 36.73 3.06
38 39 5.841957 AAGACTTGTTCTTCTTTGCATGT 57.158 34.783 0.00 0.00 40.98 3.21
92 93 0.633921 TCCTCCTCCTCCTCCTTCAG 59.366 60.000 0.00 0.00 0.00 3.02
101 102 2.043852 TCGCACCTCCTCCTCCTC 60.044 66.667 0.00 0.00 0.00 3.71
102 103 2.363147 GTCGCACCTCCTCCTCCT 60.363 66.667 0.00 0.00 0.00 3.69
103 104 3.827898 CGTCGCACCTCCTCCTCC 61.828 72.222 0.00 0.00 0.00 4.30
104 105 0.818445 TATCGTCGCACCTCCTCCTC 60.818 60.000 0.00 0.00 0.00 3.71
105 106 0.820074 CTATCGTCGCACCTCCTCCT 60.820 60.000 0.00 0.00 0.00 3.69
106 107 0.818445 TCTATCGTCGCACCTCCTCC 60.818 60.000 0.00 0.00 0.00 4.30
107 108 1.002251 CTTCTATCGTCGCACCTCCTC 60.002 57.143 0.00 0.00 0.00 3.71
151 152 1.080025 GGACGCGTGCTTTCCTAGT 60.080 57.895 24.37 0.00 0.00 2.57
172 173 2.272146 GTCATGGGCATGGTCGGT 59.728 61.111 0.00 0.00 39.24 4.69
173 174 1.820906 CAGTCATGGGCATGGTCGG 60.821 63.158 0.00 0.00 39.24 4.79
174 175 1.091771 GTCAGTCATGGGCATGGTCG 61.092 60.000 0.00 0.00 39.24 4.79
175 176 0.749454 GGTCAGTCATGGGCATGGTC 60.749 60.000 0.00 0.00 39.24 4.02
182 183 1.337384 TGGATCGGGTCAGTCATGGG 61.337 60.000 0.00 0.00 0.00 4.00
215 216 4.270084 CACAACACTAGTATATTGGCCACG 59.730 45.833 3.88 0.00 0.00 4.94
216 217 4.574828 CCACAACACTAGTATATTGGCCAC 59.425 45.833 3.88 0.00 0.00 5.01
218 219 4.574828 CACCACAACACTAGTATATTGGCC 59.425 45.833 14.72 0.00 0.00 5.36
219 220 4.035208 GCACCACAACACTAGTATATTGGC 59.965 45.833 14.72 7.38 0.00 4.52
220 221 5.182487 TGCACCACAACACTAGTATATTGG 58.818 41.667 14.72 12.45 0.00 3.16
221 222 5.874810 ACTGCACCACAACACTAGTATATTG 59.125 40.000 0.00 3.65 0.00 1.90
228 229 0.588252 GCACTGCACCACAACACTAG 59.412 55.000 0.00 0.00 0.00 2.57
265 272 4.744631 ACAAATTAAAGCCGCTGAAAGTTG 59.255 37.500 18.96 18.96 35.30 3.16
283 290 3.146066 ACGTACCACTTGCATGACAAAT 58.854 40.909 6.60 0.00 37.96 2.32
346 353 0.778479 ATAGGGGTGGTTGGTTGGGT 60.778 55.000 0.00 0.00 0.00 4.51
353 360 3.197983 GCTATAGCCTATAGGGGTGGTTG 59.802 52.174 20.58 3.80 46.46 3.77
360 367 6.155393 ACAAAGCTAAGCTATAGCCTATAGGG 59.845 42.308 21.17 7.80 43.38 3.53
383 419 4.771903 TGATTAGTTAATGGCGGCTAACA 58.228 39.130 19.00 4.41 31.65 2.41
385 421 6.017440 GTGATTGATTAGTTAATGGCGGCTAA 60.017 38.462 11.43 0.00 0.00 3.09
424 460 2.096417 GGAAACATTCTGAACGACACCG 60.096 50.000 0.00 0.00 42.50 4.94
441 477 7.606135 TGGATCTACTTAACGGATATGGAAA 57.394 36.000 0.00 0.00 0.00 3.13
697 749 1.815003 GCATGGACAAAGGTCAGGAAG 59.185 52.381 0.00 0.00 46.17 3.46
701 753 2.233271 AGTTGCATGGACAAAGGTCAG 58.767 47.619 0.00 0.00 46.17 3.51
741 793 9.898152 AGAGAGAGACTAATTGGAAATTAAAGG 57.102 33.333 0.00 0.00 0.00 3.11
765 817 4.328536 AGAAGACTAGTCGCAGAAAGAGA 58.671 43.478 17.07 0.00 39.69 3.10
766 818 4.394920 AGAGAAGACTAGTCGCAGAAAGAG 59.605 45.833 17.07 0.00 39.69 2.85
807 859 4.071423 CCACATGTGATGTTCAAGTGGTA 58.929 43.478 27.46 0.00 42.70 3.25
810 862 4.436451 CGATCCACATGTGATGTTCAAGTG 60.436 45.833 27.46 6.26 42.70 3.16
870 926 5.301805 CCCTTGCTATTTATACACCAAAGGG 59.698 44.000 2.45 2.45 41.29 3.95
871 927 5.301805 CCCCTTGCTATTTATACACCAAAGG 59.698 44.000 0.00 0.00 0.00 3.11
872 928 5.891551 ACCCCTTGCTATTTATACACCAAAG 59.108 40.000 0.00 0.00 0.00 2.77
873 929 5.833340 ACCCCTTGCTATTTATACACCAAA 58.167 37.500 0.00 0.00 0.00 3.28
874 930 5.459982 ACCCCTTGCTATTTATACACCAA 57.540 39.130 0.00 0.00 0.00 3.67
875 931 5.668535 ACTACCCCTTGCTATTTATACACCA 59.331 40.000 0.00 0.00 0.00 4.17
938 995 2.608546 AGCTTAGCTACGTACGACTGAG 59.391 50.000 24.41 20.26 36.99 3.35
939 996 2.625737 AGCTTAGCTACGTACGACTGA 58.374 47.619 24.41 11.52 36.99 3.41
1062 1155 4.154347 GACAGCTGGCCCTCCGAG 62.154 72.222 19.93 0.00 34.14 4.63
1264 1795 2.301738 GGAGGGTCTGGTTGGGGAG 61.302 68.421 0.00 0.00 0.00 4.30
1456 2155 3.637273 GCCGACCTGGTCCTTGGT 61.637 66.667 20.68 6.81 41.21 3.67
1648 2348 2.048127 AGAGGTCGCGAACTTGCC 60.048 61.111 30.00 16.00 0.00 4.52
1855 2555 2.202810 CTCGAAGAAGGCGCCCTC 60.203 66.667 26.15 21.67 34.09 4.30
2066 2770 1.666054 AAAACACACCGGCTTAACGA 58.334 45.000 0.00 0.00 35.47 3.85
2127 2831 8.844244 GCATACAATTTGACCTCTCATCTTATT 58.156 33.333 2.79 0.00 0.00 1.40
2147 2851 3.451526 CGCTGAGAAGAAGATGCATACA 58.548 45.455 0.00 0.00 0.00 2.29
2169 2873 4.027377 CGATGTTACTGATGATCACACACG 60.027 45.833 0.00 0.00 0.00 4.49
2207 3022 5.409826 CGTTTCTCTTGGTCTTAAAGCTGAT 59.590 40.000 0.00 0.00 0.00 2.90
2215 3030 4.448210 ACTTTGCGTTTCTCTTGGTCTTA 58.552 39.130 0.00 0.00 0.00 2.10
2224 3039 4.904154 GTGACAATGTACTTTGCGTTTCTC 59.096 41.667 18.59 9.88 0.00 2.87
2239 3055 7.525688 AGACGTTATATTGACAGTGACAATG 57.474 36.000 24.84 13.55 38.25 2.82
2240 3056 8.467598 ACTAGACGTTATATTGACAGTGACAAT 58.532 33.333 21.44 21.44 40.40 2.71
2241 3057 7.823665 ACTAGACGTTATATTGACAGTGACAA 58.176 34.615 10.38 10.38 0.00 3.18
2273 3092 7.352739 ACGTGACACTGACATATTTCTTTTTC 58.647 34.615 3.68 0.00 0.00 2.29
2278 3097 6.093404 CAGTACGTGACACTGACATATTTCT 58.907 40.000 10.80 0.00 45.10 2.52
2279 3098 5.862323 ACAGTACGTGACACTGACATATTTC 59.138 40.000 20.84 0.00 45.10 2.17
2280 3099 5.779922 ACAGTACGTGACACTGACATATTT 58.220 37.500 20.84 0.00 45.10 1.40
2283 3102 4.841443 AACAGTACGTGACACTGACATA 57.159 40.909 20.84 0.00 45.10 2.29
2284 3103 3.728076 AACAGTACGTGACACTGACAT 57.272 42.857 20.84 6.45 45.10 3.06
2285 3104 4.276431 TCATAACAGTACGTGACACTGACA 59.724 41.667 20.84 9.85 45.10 3.58
2289 3108 4.219944 ACCATCATAACAGTACGTGACACT 59.780 41.667 0.00 0.00 0.00 3.55
2299 3118 3.861840 CCGTCTTGACCATCATAACAGT 58.138 45.455 0.00 0.00 0.00 3.55
2304 3123 4.377021 GTTATGCCGTCTTGACCATCATA 58.623 43.478 0.00 0.00 0.00 2.15
2380 3199 0.713883 CATTGACCGTCGCACAGTAC 59.286 55.000 0.00 0.00 0.00 2.73
2381 3200 1.011968 GCATTGACCGTCGCACAGTA 61.012 55.000 0.00 0.00 0.00 2.74
2382 3201 2.317609 GCATTGACCGTCGCACAGT 61.318 57.895 0.00 0.00 0.00 3.55
2383 3202 1.638388 ATGCATTGACCGTCGCACAG 61.638 55.000 0.00 0.00 37.17 3.66
2385 3204 0.026285 GTATGCATTGACCGTCGCAC 59.974 55.000 3.54 0.00 37.17 5.34
2386 3205 0.390472 TGTATGCATTGACCGTCGCA 60.390 50.000 3.54 2.59 39.01 5.10
2387 3206 0.301687 CTGTATGCATTGACCGTCGC 59.698 55.000 3.54 0.00 0.00 5.19
2388 3207 0.301687 GCTGTATGCATTGACCGTCG 59.698 55.000 3.54 0.00 42.31 5.12
2399 3218 3.921021 GGAGTATCACGTATGCTGTATGC 59.079 47.826 0.00 0.00 38.71 3.14
2412 3231 1.453762 CCGGACGGAGGGAGTATCAC 61.454 65.000 4.40 0.00 40.51 3.06
2413 3232 1.152819 CCGGACGGAGGGAGTATCA 60.153 63.158 4.40 0.00 34.77 2.15
2414 3233 0.466922 TTCCGGACGGAGGGAGTATC 60.467 60.000 13.64 0.00 46.06 2.24
2415 3234 0.032813 TTTCCGGACGGAGGGAGTAT 60.033 55.000 13.64 0.00 46.06 2.12
2416 3235 0.032813 ATTTCCGGACGGAGGGAGTA 60.033 55.000 13.64 0.00 46.06 2.59
2417 3236 0.032813 TATTTCCGGACGGAGGGAGT 60.033 55.000 13.64 0.00 46.06 3.85
2418 3237 0.388294 GTATTTCCGGACGGAGGGAG 59.612 60.000 13.64 0.00 46.06 4.30
2419 3238 0.032813 AGTATTTCCGGACGGAGGGA 60.033 55.000 13.64 4.95 46.06 4.20
2420 3239 0.828677 AAGTATTTCCGGACGGAGGG 59.171 55.000 13.64 0.00 46.06 4.30
2421 3240 1.206371 ACAAGTATTTCCGGACGGAGG 59.794 52.381 13.64 0.00 46.06 4.30
2422 3241 2.537401 GACAAGTATTTCCGGACGGAG 58.463 52.381 13.64 3.15 46.06 4.63
2423 3242 1.135315 CGACAAGTATTTCCGGACGGA 60.135 52.381 1.83 9.76 43.52 4.69
2424 3243 1.274596 CGACAAGTATTTCCGGACGG 58.725 55.000 1.83 3.96 0.00 4.79
2425 3244 1.135315 TCCGACAAGTATTTCCGGACG 60.135 52.381 1.83 0.00 43.47 4.79
2426 3245 2.165030 TCTCCGACAAGTATTTCCGGAC 59.835 50.000 1.83 0.00 43.47 4.79
2427 3246 2.449464 TCTCCGACAAGTATTTCCGGA 58.551 47.619 0.00 0.00 45.74 5.14
2428 3247 2.953466 TCTCCGACAAGTATTTCCGG 57.047 50.000 0.00 0.00 41.36 5.14
2429 3248 4.034048 CCATTTCTCCGACAAGTATTTCCG 59.966 45.833 0.00 0.00 0.00 4.30
2430 3249 5.183228 TCCATTTCTCCGACAAGTATTTCC 58.817 41.667 0.00 0.00 0.00 3.13
2431 3250 6.927294 ATCCATTTCTCCGACAAGTATTTC 57.073 37.500 0.00 0.00 0.00 2.17
2432 3251 8.801882 TTTATCCATTTCTCCGACAAGTATTT 57.198 30.769 0.00 0.00 0.00 1.40
2433 3252 8.801882 TTTTATCCATTTCTCCGACAAGTATT 57.198 30.769 0.00 0.00 0.00 1.89
2434 3253 8.801882 TTTTTATCCATTTCTCCGACAAGTAT 57.198 30.769 0.00 0.00 0.00 2.12
2435 3254 8.801882 ATTTTTATCCATTTCTCCGACAAGTA 57.198 30.769 0.00 0.00 0.00 2.24
2436 3255 7.703058 ATTTTTATCCATTTCTCCGACAAGT 57.297 32.000 0.00 0.00 0.00 3.16
2437 3256 8.243426 TCAATTTTTATCCATTTCTCCGACAAG 58.757 33.333 0.00 0.00 0.00 3.16
2438 3257 8.116651 TCAATTTTTATCCATTTCTCCGACAA 57.883 30.769 0.00 0.00 0.00 3.18
2439 3258 7.695480 TCAATTTTTATCCATTTCTCCGACA 57.305 32.000 0.00 0.00 0.00 4.35
2440 3259 8.190784 ACATCAATTTTTATCCATTTCTCCGAC 58.809 33.333 0.00 0.00 0.00 4.79
2441 3260 8.292444 ACATCAATTTTTATCCATTTCTCCGA 57.708 30.769 0.00 0.00 0.00 4.55
2462 3281 7.490725 CCATCGATCCAATCTAACAGATACATC 59.509 40.741 0.00 0.00 32.89 3.06
2465 3284 6.925211 TCCATCGATCCAATCTAACAGATAC 58.075 40.000 0.00 0.00 32.89 2.24
2467 3286 6.425210 TTCCATCGATCCAATCTAACAGAT 57.575 37.500 0.00 0.00 36.28 2.90


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.