Multiple sequence alignment - TraesCS2B01G613700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G613700 chr2B 100.000 3338 0 0 1 3338 792979338 792976001 0.000000e+00 6165.0
1 TraesCS2B01G613700 chr2B 94.360 461 26 0 3 463 705362647 705362187 0.000000e+00 708.0
2 TraesCS2B01G613700 chr2B 93.723 462 27 1 3 464 7586996 7587455 0.000000e+00 691.0
3 TraesCS2B01G613700 chr2D 94.703 2322 72 21 719 3015 644137524 644139819 0.000000e+00 3559.0
4 TraesCS2B01G613700 chr2D 82.441 598 46 32 2369 2950 644156005 644156559 5.040000e-128 468.0
5 TraesCS2B01G613700 chr2D 84.631 488 43 13 3 463 442010446 442010928 1.090000e-124 457.0
6 TraesCS2B01G613700 chr2D 80.726 358 43 10 1257 1613 638890090 638889758 4.270000e-64 255.0
7 TraesCS2B01G613700 chr2D 93.902 164 10 0 3014 3177 644139930 644140093 7.150000e-62 248.0
8 TraesCS2B01G613700 chr2D 100.000 32 0 0 3251 3282 644140117 644140148 3.600000e-05 60.2
9 TraesCS2B01G613700 chr2A 93.982 2343 90 33 692 3015 769254403 769256713 0.000000e+00 3498.0
10 TraesCS2B01G613700 chr2A 78.025 719 89 32 1270 1985 764785083 764784431 4.040000e-104 388.0
11 TraesCS2B01G613700 chr2A 93.122 189 11 1 3014 3200 769256826 769257014 3.280000e-70 276.0
12 TraesCS2B01G613700 chr2A 91.667 72 5 1 392 463 771803732 771803802 7.620000e-17 99.0
13 TraesCS2B01G613700 chr4B 89.002 491 26 7 3 467 581949598 581950086 1.730000e-162 582.0
14 TraesCS2B01G613700 chr7B 87.117 489 37 10 3 465 732585511 732585023 6.340000e-147 531.0
15 TraesCS2B01G613700 chr4D 79.466 487 70 22 3 462 9065721 9066204 5.370000e-83 318.0
16 TraesCS2B01G613700 chr7D 78.867 459 87 7 6 460 139753542 139753994 5.410000e-78 302.0
17 TraesCS2B01G613700 chr3D 77.991 468 92 10 1 463 378781247 378781708 1.960000e-72 283.0
18 TraesCS2B01G613700 chr4A 93.333 45 3 0 619 663 462219715 462219671 2.150000e-07 67.6


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G613700 chr2B 792976001 792979338 3337 True 6165.000000 6165 100.000000 1 3338 1 chr2B.!!$R2 3337
1 TraesCS2B01G613700 chr2D 644137524 644140148 2624 False 1289.066667 3559 96.201667 719 3282 3 chr2D.!!$F3 2563
2 TraesCS2B01G613700 chr2D 644156005 644156559 554 False 468.000000 468 82.441000 2369 2950 1 chr2D.!!$F2 581
3 TraesCS2B01G613700 chr2A 769254403 769257014 2611 False 1887.000000 3498 93.552000 692 3200 2 chr2A.!!$F2 2508
4 TraesCS2B01G613700 chr2A 764784431 764785083 652 True 388.000000 388 78.025000 1270 1985 1 chr2A.!!$R1 715

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
391 392 0.029567 CGAGGGAGGTTCTTCGATCG 59.97 60.0 9.36 9.36 0.0 3.69 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2341 2362 1.227645 ACGATGATCCATGCCGGTG 60.228 57.895 1.9 0.0 35.57 4.94 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 3.286407 TACGTTCCCAATCGCCGA 58.714 55.556 0.00 0.00 0.00 5.54
18 19 1.140161 TACGTTCCCAATCGCCGAG 59.860 57.895 0.00 0.00 0.00 4.63
19 20 1.314534 TACGTTCCCAATCGCCGAGA 61.315 55.000 0.00 0.00 0.00 4.04
20 21 2.165301 CGTTCCCAATCGCCGAGAC 61.165 63.158 0.00 0.00 0.00 3.36
21 22 1.079405 GTTCCCAATCGCCGAGACA 60.079 57.895 0.00 0.00 0.00 3.41
22 23 1.079405 TTCCCAATCGCCGAGACAC 60.079 57.895 0.00 0.00 0.00 3.67
23 24 1.541310 TTCCCAATCGCCGAGACACT 61.541 55.000 0.00 0.00 0.00 3.55
24 25 1.519455 CCCAATCGCCGAGACACTC 60.519 63.158 0.00 0.00 0.00 3.51
25 26 1.513158 CCAATCGCCGAGACACTCT 59.487 57.895 0.00 0.00 0.00 3.24
26 27 0.803768 CCAATCGCCGAGACACTCTG 60.804 60.000 0.00 0.00 0.00 3.35
27 28 1.153745 AATCGCCGAGACACTCTGC 60.154 57.895 0.00 0.00 37.36 4.26
28 29 2.564553 AATCGCCGAGACACTCTGCC 62.565 60.000 8.94 0.00 37.41 4.85
29 30 3.753434 CGCCGAGACACTCTGCCT 61.753 66.667 8.94 0.00 37.41 4.75
30 31 2.125753 GCCGAGACACTCTGCCTG 60.126 66.667 0.00 0.00 35.26 4.85
31 32 2.640302 GCCGAGACACTCTGCCTGA 61.640 63.158 0.00 0.00 35.26 3.86
32 33 1.967535 CCGAGACACTCTGCCTGAA 59.032 57.895 0.00 0.00 0.00 3.02
33 34 0.389166 CCGAGACACTCTGCCTGAAC 60.389 60.000 0.00 0.00 0.00 3.18
34 35 0.600557 CGAGACACTCTGCCTGAACT 59.399 55.000 0.00 0.00 0.00 3.01
35 36 1.813178 CGAGACACTCTGCCTGAACTA 59.187 52.381 0.00 0.00 0.00 2.24
36 37 2.414824 CGAGACACTCTGCCTGAACTAC 60.415 54.545 0.00 0.00 0.00 2.73
37 38 1.542030 AGACACTCTGCCTGAACTACG 59.458 52.381 0.00 0.00 0.00 3.51
38 39 1.540267 GACACTCTGCCTGAACTACGA 59.460 52.381 0.00 0.00 0.00 3.43
39 40 1.961394 ACACTCTGCCTGAACTACGAA 59.039 47.619 0.00 0.00 0.00 3.85
40 41 2.029828 ACACTCTGCCTGAACTACGAAG 60.030 50.000 0.00 0.00 0.00 3.79
41 42 2.229062 CACTCTGCCTGAACTACGAAGA 59.771 50.000 0.00 0.00 0.00 2.87
42 43 2.229302 ACTCTGCCTGAACTACGAAGAC 59.771 50.000 0.00 0.00 0.00 3.01
43 44 1.199327 TCTGCCTGAACTACGAAGACG 59.801 52.381 0.00 0.00 45.75 4.18
57 58 2.735857 GACGTTTGGTCCGACGGG 60.736 66.667 15.25 0.00 43.16 5.28
58 59 3.504524 GACGTTTGGTCCGACGGGT 62.505 63.158 15.25 1.16 43.16 5.28
59 60 2.735857 CGTTTGGTCCGACGGGTC 60.736 66.667 15.25 7.72 35.74 4.46
69 70 2.260743 GACGGGTCGGAACCTCAC 59.739 66.667 10.93 0.00 45.66 3.51
70 71 3.621892 GACGGGTCGGAACCTCACG 62.622 68.421 10.93 0.00 45.66 4.35
71 72 4.430765 CGGGTCGGAACCTCACGG 62.431 72.222 10.93 0.00 45.66 4.94
72 73 4.078516 GGGTCGGAACCTCACGGG 62.079 72.222 4.39 0.00 45.66 5.28
73 74 4.754667 GGTCGGAACCTCACGGGC 62.755 72.222 0.00 0.00 42.80 6.13
74 75 3.692406 GTCGGAACCTCACGGGCT 61.692 66.667 0.00 0.00 39.10 5.19
75 76 2.920912 TCGGAACCTCACGGGCTT 60.921 61.111 0.00 0.00 39.10 4.35
76 77 2.434359 CGGAACCTCACGGGCTTC 60.434 66.667 0.00 0.00 39.10 3.86
77 78 2.434359 GGAACCTCACGGGCTTCG 60.434 66.667 0.00 0.00 45.88 3.79
78 79 3.119096 GAACCTCACGGGCTTCGC 61.119 66.667 0.29 0.00 43.89 4.70
88 89 4.272100 GGCTTCGCCGTGTTCTAA 57.728 55.556 0.00 0.00 39.62 2.10
89 90 2.079049 GGCTTCGCCGTGTTCTAAG 58.921 57.895 0.00 0.00 39.62 2.18
90 91 1.420312 GCTTCGCCGTGTTCTAAGC 59.580 57.895 0.00 0.00 36.17 3.09
91 92 1.289109 GCTTCGCCGTGTTCTAAGCA 61.289 55.000 0.00 0.00 41.65 3.91
92 93 0.716108 CTTCGCCGTGTTCTAAGCAG 59.284 55.000 0.00 0.00 0.00 4.24
93 94 1.289109 TTCGCCGTGTTCTAAGCAGC 61.289 55.000 0.00 0.00 0.00 5.25
94 95 2.027073 CGCCGTGTTCTAAGCAGCA 61.027 57.895 0.00 0.00 0.00 4.41
95 96 1.497722 GCCGTGTTCTAAGCAGCAC 59.502 57.895 0.00 0.00 0.00 4.40
97 98 1.130613 CGTGTTCTAAGCAGCACGC 59.869 57.895 0.00 0.00 45.86 5.34
98 99 1.556591 CGTGTTCTAAGCAGCACGCA 61.557 55.000 0.00 0.00 45.86 5.24
99 100 0.798776 GTGTTCTAAGCAGCACGCAT 59.201 50.000 0.00 0.00 46.13 4.73
100 101 1.999735 GTGTTCTAAGCAGCACGCATA 59.000 47.619 0.00 0.00 46.13 3.14
101 102 2.609459 GTGTTCTAAGCAGCACGCATAT 59.391 45.455 0.00 0.00 46.13 1.78
102 103 2.866156 TGTTCTAAGCAGCACGCATATC 59.134 45.455 0.00 0.00 46.13 1.63
103 104 2.154854 TCTAAGCAGCACGCATATCC 57.845 50.000 0.00 0.00 46.13 2.59
104 105 1.688735 TCTAAGCAGCACGCATATCCT 59.311 47.619 0.00 0.00 46.13 3.24
105 106 2.103094 TCTAAGCAGCACGCATATCCTT 59.897 45.455 0.00 0.00 46.13 3.36
106 107 1.019673 AAGCAGCACGCATATCCTTG 58.980 50.000 0.00 0.00 46.13 3.61
107 108 0.107508 AGCAGCACGCATATCCTTGT 60.108 50.000 0.00 0.00 46.13 3.16
108 109 1.138859 AGCAGCACGCATATCCTTGTA 59.861 47.619 0.00 0.00 46.13 2.41
109 110 1.528586 GCAGCACGCATATCCTTGTAG 59.471 52.381 0.00 0.00 41.79 2.74
110 111 2.803133 GCAGCACGCATATCCTTGTAGA 60.803 50.000 0.00 0.00 41.79 2.59
111 112 3.457234 CAGCACGCATATCCTTGTAGAA 58.543 45.455 0.00 0.00 0.00 2.10
112 113 3.246226 CAGCACGCATATCCTTGTAGAAC 59.754 47.826 0.00 0.00 0.00 3.01
113 114 2.218759 GCACGCATATCCTTGTAGAACG 59.781 50.000 0.00 0.00 0.00 3.95
114 115 3.444916 CACGCATATCCTTGTAGAACGT 58.555 45.455 0.00 0.00 0.00 3.99
115 116 3.486108 CACGCATATCCTTGTAGAACGTC 59.514 47.826 0.00 0.00 0.00 4.34
116 117 2.719556 CGCATATCCTTGTAGAACGTCG 59.280 50.000 0.00 0.00 0.00 5.12
117 118 3.703420 GCATATCCTTGTAGAACGTCGT 58.297 45.455 0.00 0.00 0.00 4.34
118 119 3.729716 GCATATCCTTGTAGAACGTCGTC 59.270 47.826 0.00 0.00 0.00 4.20
119 120 2.539346 ATCCTTGTAGAACGTCGTCG 57.461 50.000 0.00 0.00 43.34 5.12
120 121 0.518636 TCCTTGTAGAACGTCGTCGG 59.481 55.000 7.05 0.00 41.85 4.79
121 122 0.455633 CCTTGTAGAACGTCGTCGGG 60.456 60.000 7.05 0.00 41.85 5.14
122 123 1.069378 CTTGTAGAACGTCGTCGGGC 61.069 60.000 7.05 0.00 41.85 6.13
123 124 1.518056 TTGTAGAACGTCGTCGGGCT 61.518 55.000 7.05 5.68 41.85 5.19
124 125 0.673333 TGTAGAACGTCGTCGGGCTA 60.673 55.000 7.05 4.73 41.85 3.93
125 126 0.447801 GTAGAACGTCGTCGGGCTAA 59.552 55.000 7.05 0.00 41.85 3.09
126 127 1.135689 GTAGAACGTCGTCGGGCTAAA 60.136 52.381 7.05 0.00 41.85 1.85
127 128 0.109412 AGAACGTCGTCGGGCTAAAG 60.109 55.000 7.05 0.00 41.85 1.85
128 129 1.074872 GAACGTCGTCGGGCTAAAGG 61.075 60.000 7.05 0.00 41.85 3.11
129 130 1.809567 AACGTCGTCGGGCTAAAGGT 61.810 55.000 7.05 0.00 41.85 3.50
130 131 1.080298 CGTCGTCGGGCTAAAGGTT 60.080 57.895 0.00 0.00 0.00 3.50
131 132 0.668401 CGTCGTCGGGCTAAAGGTTT 60.668 55.000 0.00 0.00 0.00 3.27
132 133 1.516161 GTCGTCGGGCTAAAGGTTTT 58.484 50.000 0.00 0.00 0.00 2.43
133 134 1.875514 GTCGTCGGGCTAAAGGTTTTT 59.124 47.619 0.00 0.00 0.00 1.94
134 135 1.874872 TCGTCGGGCTAAAGGTTTTTG 59.125 47.619 0.00 0.00 0.00 2.44
135 136 1.664874 CGTCGGGCTAAAGGTTTTTGC 60.665 52.381 0.41 0.41 0.00 3.68
136 137 0.963225 TCGGGCTAAAGGTTTTTGCC 59.037 50.000 15.50 15.50 38.57 4.52
137 138 0.388006 CGGGCTAAAGGTTTTTGCCG 60.388 55.000 16.68 10.66 39.39 5.69
138 139 0.677288 GGGCTAAAGGTTTTTGCCGT 59.323 50.000 16.68 0.00 39.39 5.68
139 140 1.887854 GGGCTAAAGGTTTTTGCCGTA 59.112 47.619 16.68 0.00 39.39 4.02
140 141 2.494471 GGGCTAAAGGTTTTTGCCGTAT 59.506 45.455 16.68 0.00 39.39 3.06
141 142 3.507786 GGCTAAAGGTTTTTGCCGTATG 58.492 45.455 10.35 0.00 33.76 2.39
142 143 3.191791 GGCTAAAGGTTTTTGCCGTATGA 59.808 43.478 10.35 0.00 33.76 2.15
143 144 4.321378 GGCTAAAGGTTTTTGCCGTATGAA 60.321 41.667 10.35 0.00 33.76 2.57
144 145 4.619760 GCTAAAGGTTTTTGCCGTATGAAC 59.380 41.667 0.00 0.00 0.00 3.18
145 146 3.653539 AAGGTTTTTGCCGTATGAACC 57.346 42.857 0.00 0.00 39.97 3.62
146 147 1.890489 AGGTTTTTGCCGTATGAACCC 59.110 47.619 0.00 0.00 40.42 4.11
147 148 1.890489 GGTTTTTGCCGTATGAACCCT 59.110 47.619 0.00 0.00 34.97 4.34
148 149 3.083293 GGTTTTTGCCGTATGAACCCTA 58.917 45.455 0.00 0.00 34.97 3.53
149 150 3.128068 GGTTTTTGCCGTATGAACCCTAG 59.872 47.826 0.00 0.00 34.97 3.02
150 151 2.032680 TTTGCCGTATGAACCCTAGC 57.967 50.000 0.00 0.00 0.00 3.42
151 152 0.179468 TTGCCGTATGAACCCTAGCC 59.821 55.000 0.00 0.00 0.00 3.93
152 153 0.978667 TGCCGTATGAACCCTAGCCA 60.979 55.000 0.00 0.00 0.00 4.75
153 154 0.249911 GCCGTATGAACCCTAGCCAG 60.250 60.000 0.00 0.00 0.00 4.85
154 155 0.393077 CCGTATGAACCCTAGCCAGG 59.607 60.000 0.00 0.00 42.22 4.45
172 173 2.893398 GCTAGCCAGCGTACACCT 59.107 61.111 2.29 0.00 38.22 4.00
173 174 1.218316 GCTAGCCAGCGTACACCTT 59.782 57.895 2.29 0.00 38.22 3.50
174 175 0.806492 GCTAGCCAGCGTACACCTTC 60.806 60.000 2.29 0.00 38.22 3.46
175 176 0.525668 CTAGCCAGCGTACACCTTCG 60.526 60.000 0.00 0.00 0.00 3.79
176 177 1.246056 TAGCCAGCGTACACCTTCGT 61.246 55.000 0.00 0.00 0.00 3.85
177 178 1.666872 GCCAGCGTACACCTTCGTT 60.667 57.895 0.00 0.00 0.00 3.85
178 179 1.623973 GCCAGCGTACACCTTCGTTC 61.624 60.000 0.00 0.00 0.00 3.95
179 180 0.319211 CCAGCGTACACCTTCGTTCA 60.319 55.000 0.00 0.00 0.00 3.18
180 181 0.782384 CAGCGTACACCTTCGTTCAC 59.218 55.000 0.00 0.00 0.00 3.18
181 182 0.319297 AGCGTACACCTTCGTTCACC 60.319 55.000 0.00 0.00 0.00 4.02
182 183 1.611592 GCGTACACCTTCGTTCACCG 61.612 60.000 0.00 0.00 38.13 4.94
183 184 1.611592 CGTACACCTTCGTTCACCGC 61.612 60.000 0.00 0.00 36.19 5.68
184 185 1.005867 TACACCTTCGTTCACCGCC 60.006 57.895 0.00 0.00 36.19 6.13
185 186 2.752322 TACACCTTCGTTCACCGCCG 62.752 60.000 0.00 0.00 36.19 6.46
186 187 4.675029 ACCTTCGTTCACCGCCGG 62.675 66.667 0.00 0.00 36.19 6.13
187 188 4.367023 CCTTCGTTCACCGCCGGA 62.367 66.667 11.71 0.00 36.19 5.14
188 189 2.125673 CTTCGTTCACCGCCGGAT 60.126 61.111 11.71 0.00 36.19 4.18
189 190 2.125832 TTCGTTCACCGCCGGATC 60.126 61.111 11.71 0.00 36.19 3.36
190 191 3.975083 TTCGTTCACCGCCGGATCG 62.975 63.158 11.71 8.86 36.19 3.69
191 192 4.789075 CGTTCACCGCCGGATCGT 62.789 66.667 11.71 0.00 0.00 3.73
192 193 2.884207 GTTCACCGCCGGATCGTC 60.884 66.667 11.71 0.00 0.00 4.20
193 194 4.137872 TTCACCGCCGGATCGTCC 62.138 66.667 11.71 0.00 0.00 4.79
195 196 4.570663 CACCGCCGGATCGTCCTC 62.571 72.222 11.71 0.00 33.30 3.71
196 197 4.816984 ACCGCCGGATCGTCCTCT 62.817 66.667 11.71 0.00 33.30 3.69
197 198 3.528370 CCGCCGGATCGTCCTCTT 61.528 66.667 5.05 0.00 33.30 2.85
198 199 2.026301 CGCCGGATCGTCCTCTTC 59.974 66.667 5.05 0.00 33.30 2.87
199 200 2.771639 CGCCGGATCGTCCTCTTCA 61.772 63.158 5.05 0.00 33.30 3.02
200 201 1.515954 GCCGGATCGTCCTCTTCAA 59.484 57.895 5.05 0.00 33.30 2.69
201 202 0.105039 GCCGGATCGTCCTCTTCAAT 59.895 55.000 5.05 0.00 33.30 2.57
202 203 1.870167 GCCGGATCGTCCTCTTCAATC 60.870 57.143 5.05 0.00 33.30 2.67
203 204 1.409064 CCGGATCGTCCTCTTCAATCA 59.591 52.381 0.00 0.00 33.30 2.57
204 205 2.464865 CGGATCGTCCTCTTCAATCAC 58.535 52.381 3.15 0.00 33.30 3.06
205 206 2.799917 CGGATCGTCCTCTTCAATCACC 60.800 54.545 3.15 0.00 33.30 4.02
206 207 2.168521 GGATCGTCCTCTTCAATCACCA 59.831 50.000 0.00 0.00 32.53 4.17
207 208 3.452474 GATCGTCCTCTTCAATCACCAG 58.548 50.000 0.00 0.00 0.00 4.00
208 209 2.525368 TCGTCCTCTTCAATCACCAGA 58.475 47.619 0.00 0.00 0.00 3.86
209 210 3.099905 TCGTCCTCTTCAATCACCAGAT 58.900 45.455 0.00 0.00 35.53 2.90
210 211 3.131223 TCGTCCTCTTCAATCACCAGATC 59.869 47.826 0.00 0.00 31.90 2.75
211 212 3.118992 CGTCCTCTTCAATCACCAGATCA 60.119 47.826 0.00 0.00 31.90 2.92
212 213 4.442612 CGTCCTCTTCAATCACCAGATCAT 60.443 45.833 0.00 0.00 31.90 2.45
213 214 5.055812 GTCCTCTTCAATCACCAGATCATC 58.944 45.833 0.00 0.00 31.90 2.92
214 215 4.056740 CCTCTTCAATCACCAGATCATCG 58.943 47.826 0.00 0.00 31.90 3.84
215 216 4.202192 CCTCTTCAATCACCAGATCATCGA 60.202 45.833 0.00 0.00 31.90 3.59
216 217 5.343307 TCTTCAATCACCAGATCATCGAA 57.657 39.130 0.00 0.00 31.90 3.71
217 218 5.354767 TCTTCAATCACCAGATCATCGAAG 58.645 41.667 0.00 0.00 31.90 3.79
218 219 4.743057 TCAATCACCAGATCATCGAAGT 57.257 40.909 0.00 0.00 31.90 3.01
219 220 4.686972 TCAATCACCAGATCATCGAAGTC 58.313 43.478 0.00 0.00 31.90 3.01
220 221 4.403752 TCAATCACCAGATCATCGAAGTCT 59.596 41.667 0.00 0.00 31.90 3.24
221 222 3.790152 TCACCAGATCATCGAAGTCTG 57.210 47.619 14.58 14.58 39.20 3.51
222 223 2.159184 TCACCAGATCATCGAAGTCTGC 60.159 50.000 15.59 0.00 38.38 4.26
223 224 1.827344 ACCAGATCATCGAAGTCTGCA 59.173 47.619 15.59 0.00 38.38 4.41
224 225 2.433604 ACCAGATCATCGAAGTCTGCAT 59.566 45.455 15.59 6.80 38.38 3.96
225 226 3.058450 CCAGATCATCGAAGTCTGCATC 58.942 50.000 15.59 0.29 38.38 3.91
226 227 3.243805 CCAGATCATCGAAGTCTGCATCT 60.244 47.826 15.59 2.32 38.38 2.90
227 228 4.370049 CAGATCATCGAAGTCTGCATCTT 58.630 43.478 10.75 4.33 33.72 2.40
228 229 4.445052 CAGATCATCGAAGTCTGCATCTTC 59.555 45.833 16.76 16.76 38.22 2.87
229 230 3.170791 TCATCGAAGTCTGCATCTTCC 57.829 47.619 19.25 7.93 38.31 3.46
230 231 2.497273 TCATCGAAGTCTGCATCTTCCA 59.503 45.455 19.25 11.67 38.31 3.53
231 232 2.662006 TCGAAGTCTGCATCTTCCAG 57.338 50.000 19.25 10.89 38.31 3.86
232 233 2.171003 TCGAAGTCTGCATCTTCCAGA 58.829 47.619 19.25 12.40 38.31 3.86
233 234 2.762887 TCGAAGTCTGCATCTTCCAGAT 59.237 45.455 19.25 0.00 41.01 2.90
244 245 3.703001 TCTTCCAGATGGAGTTGTTCC 57.297 47.619 1.13 0.00 46.36 3.62
254 255 3.643159 GGAGTTGTTCCATGAAACCAC 57.357 47.619 0.00 0.00 46.01 4.16
255 256 2.296190 GGAGTTGTTCCATGAAACCACC 59.704 50.000 0.00 0.00 46.01 4.61
256 257 2.955660 GAGTTGTTCCATGAAACCACCA 59.044 45.455 0.00 0.00 0.00 4.17
257 258 3.370104 AGTTGTTCCATGAAACCACCAA 58.630 40.909 0.00 0.00 0.00 3.67
258 259 3.384467 AGTTGTTCCATGAAACCACCAAG 59.616 43.478 0.00 0.00 0.00 3.61
259 260 3.304911 TGTTCCATGAAACCACCAAGA 57.695 42.857 0.00 0.00 0.00 3.02
260 261 3.843422 TGTTCCATGAAACCACCAAGAT 58.157 40.909 0.00 0.00 0.00 2.40
261 262 3.826157 TGTTCCATGAAACCACCAAGATC 59.174 43.478 0.00 0.00 0.00 2.75
262 263 4.082125 GTTCCATGAAACCACCAAGATCT 58.918 43.478 0.00 0.00 0.00 2.75
263 264 3.689347 TCCATGAAACCACCAAGATCTG 58.311 45.455 0.00 0.00 0.00 2.90
264 265 2.165030 CCATGAAACCACCAAGATCTGC 59.835 50.000 0.00 0.00 0.00 4.26
265 266 1.909700 TGAAACCACCAAGATCTGCC 58.090 50.000 0.00 0.00 0.00 4.85
266 267 0.804989 GAAACCACCAAGATCTGCCG 59.195 55.000 0.00 0.00 0.00 5.69
267 268 1.244019 AAACCACCAAGATCTGCCGC 61.244 55.000 0.00 0.00 0.00 6.53
268 269 2.825836 CCACCAAGATCTGCCGCC 60.826 66.667 0.00 0.00 0.00 6.13
269 270 2.270205 CACCAAGATCTGCCGCCT 59.730 61.111 0.00 0.00 0.00 5.52
270 271 1.377725 CACCAAGATCTGCCGCCTT 60.378 57.895 0.00 0.00 0.00 4.35
271 272 1.377725 ACCAAGATCTGCCGCCTTG 60.378 57.895 0.00 0.00 37.58 3.61
272 273 3.506108 CAAGATCTGCCGCCTTGG 58.494 61.111 0.00 0.00 42.50 3.61
294 295 4.016706 GCCGCCACCACCACTACT 62.017 66.667 0.00 0.00 0.00 2.57
295 296 2.264794 CCGCCACCACCACTACTC 59.735 66.667 0.00 0.00 0.00 2.59
296 297 2.126071 CGCCACCACCACTACTCG 60.126 66.667 0.00 0.00 0.00 4.18
297 298 2.927580 CGCCACCACCACTACTCGT 61.928 63.158 0.00 0.00 0.00 4.18
298 299 1.080025 GCCACCACCACTACTCGTC 60.080 63.158 0.00 0.00 0.00 4.20
299 300 1.590147 CCACCACCACTACTCGTCC 59.410 63.158 0.00 0.00 0.00 4.79
300 301 1.590147 CACCACCACTACTCGTCCC 59.410 63.158 0.00 0.00 0.00 4.46
301 302 1.975407 ACCACCACTACTCGTCCCG 60.975 63.158 0.00 0.00 0.00 5.14
302 303 2.707849 CCACCACTACTCGTCCCGG 61.708 68.421 0.00 0.00 0.00 5.73
303 304 1.676635 CACCACTACTCGTCCCGGA 60.677 63.158 0.73 0.00 0.00 5.14
304 305 1.676967 ACCACTACTCGTCCCGGAC 60.677 63.158 0.73 7.59 0.00 4.79
305 306 1.676635 CCACTACTCGTCCCGGACA 60.677 63.158 17.87 4.20 32.09 4.02
306 307 1.654954 CCACTACTCGTCCCGGACAG 61.655 65.000 17.87 14.91 32.09 3.51
307 308 0.675837 CACTACTCGTCCCGGACAGA 60.676 60.000 17.87 13.61 32.09 3.41
308 309 0.392729 ACTACTCGTCCCGGACAGAG 60.393 60.000 25.31 25.31 38.30 3.35
309 310 1.716826 CTACTCGTCCCGGACAGAGC 61.717 65.000 26.17 1.66 37.01 4.09
310 311 2.473891 TACTCGTCCCGGACAGAGCA 62.474 60.000 26.17 17.65 37.01 4.26
311 312 2.362503 TCGTCCCGGACAGAGCAT 60.363 61.111 17.87 0.00 32.09 3.79
312 313 2.105128 CGTCCCGGACAGAGCATC 59.895 66.667 17.87 0.00 32.09 3.91
313 314 2.710902 CGTCCCGGACAGAGCATCA 61.711 63.158 17.87 0.00 37.82 3.07
314 315 1.142748 GTCCCGGACAGAGCATCAG 59.857 63.158 13.05 0.00 37.82 2.90
315 316 2.202987 CCCGGACAGAGCATCAGC 60.203 66.667 0.73 0.00 37.82 4.26
316 317 2.202987 CCGGACAGAGCATCAGCC 60.203 66.667 0.00 0.00 43.56 4.85
317 318 2.580815 CGGACAGAGCATCAGCCA 59.419 61.111 0.00 0.00 43.56 4.75
318 319 1.812922 CGGACAGAGCATCAGCCAC 60.813 63.158 0.00 0.00 43.56 5.01
319 320 1.451028 GGACAGAGCATCAGCCACC 60.451 63.158 0.00 0.00 43.56 4.61
320 321 1.601171 GACAGAGCATCAGCCACCT 59.399 57.895 0.00 0.00 43.56 4.00
321 322 0.743701 GACAGAGCATCAGCCACCTG 60.744 60.000 0.00 0.00 43.56 4.00
329 330 1.825341 TCAGCCACCTGATCCATCG 59.175 57.895 0.00 0.00 42.98 3.84
330 331 0.977627 TCAGCCACCTGATCCATCGT 60.978 55.000 0.00 0.00 42.98 3.73
331 332 0.531532 CAGCCACCTGATCCATCGTC 60.532 60.000 0.00 0.00 41.77 4.20
332 333 1.227674 GCCACCTGATCCATCGTCC 60.228 63.158 0.00 0.00 0.00 4.79
333 334 1.447643 CCACCTGATCCATCGTCCC 59.552 63.158 0.00 0.00 0.00 4.46
334 335 1.447643 CACCTGATCCATCGTCCCC 59.552 63.158 0.00 0.00 0.00 4.81
335 336 2.134287 ACCTGATCCATCGTCCCCG 61.134 63.158 0.00 0.00 0.00 5.73
336 337 2.737180 CTGATCCATCGTCCCCGG 59.263 66.667 0.00 0.00 33.95 5.73
337 338 2.842462 TGATCCATCGTCCCCGGG 60.842 66.667 15.80 15.80 33.95 5.73
338 339 4.315941 GATCCATCGTCCCCGGGC 62.316 72.222 17.73 0.15 33.95 6.13
339 340 4.880426 ATCCATCGTCCCCGGGCT 62.880 66.667 17.73 0.00 33.95 5.19
342 343 4.227134 CATCGTCCCCGGGCTGAG 62.227 72.222 17.73 6.01 33.95 3.35
343 344 4.458829 ATCGTCCCCGGGCTGAGA 62.459 66.667 17.73 11.92 33.95 3.27
371 372 3.518998 GAGAGCACGCGAGCCCTA 61.519 66.667 24.84 0.00 34.23 3.53
372 373 3.759766 GAGAGCACGCGAGCCCTAC 62.760 68.421 24.84 13.57 34.23 3.18
376 377 4.554363 CACGCGAGCCCTACGAGG 62.554 72.222 15.93 0.00 35.15 4.63
387 388 0.739561 CCTACGAGGGAGGTTCTTCG 59.260 60.000 0.00 0.00 0.00 3.79
388 389 1.681166 CCTACGAGGGAGGTTCTTCGA 60.681 57.143 0.00 0.00 0.00 3.71
389 390 2.299521 CTACGAGGGAGGTTCTTCGAT 58.700 52.381 0.00 0.00 0.00 3.59
390 391 1.104630 ACGAGGGAGGTTCTTCGATC 58.895 55.000 0.00 0.00 0.00 3.69
391 392 0.029567 CGAGGGAGGTTCTTCGATCG 59.970 60.000 9.36 9.36 0.00 3.69
392 393 0.386113 GAGGGAGGTTCTTCGATCGG 59.614 60.000 16.41 0.00 0.00 4.18
393 394 0.324460 AGGGAGGTTCTTCGATCGGT 60.324 55.000 16.41 0.00 0.00 4.69
394 395 1.064166 AGGGAGGTTCTTCGATCGGTA 60.064 52.381 16.41 2.87 0.00 4.02
395 396 1.337387 GGGAGGTTCTTCGATCGGTAG 59.663 57.143 16.41 13.01 0.00 3.18
396 397 1.337387 GGAGGTTCTTCGATCGGTAGG 59.663 57.143 16.41 0.00 0.00 3.18
397 398 2.295885 GAGGTTCTTCGATCGGTAGGA 58.704 52.381 16.41 5.15 0.00 2.94
398 399 2.291190 GAGGTTCTTCGATCGGTAGGAG 59.709 54.545 16.41 6.20 0.00 3.69
399 400 1.337387 GGTTCTTCGATCGGTAGGAGG 59.663 57.143 16.41 0.00 0.00 4.30
400 401 2.295885 GTTCTTCGATCGGTAGGAGGA 58.704 52.381 16.41 0.00 0.00 3.71
401 402 1.964552 TCTTCGATCGGTAGGAGGAC 58.035 55.000 16.41 0.00 0.00 3.85
402 403 1.489649 TCTTCGATCGGTAGGAGGACT 59.510 52.381 16.41 0.00 0.00 3.85
403 404 1.874872 CTTCGATCGGTAGGAGGACTC 59.125 57.143 16.41 0.00 0.00 3.36
404 405 1.129917 TCGATCGGTAGGAGGACTCT 58.870 55.000 16.41 0.00 0.00 3.24
405 406 1.070445 TCGATCGGTAGGAGGACTCTC 59.930 57.143 16.41 0.00 39.25 3.20
406 407 1.202663 CGATCGGTAGGAGGACTCTCA 60.203 57.143 7.38 0.00 41.69 3.27
407 408 2.500229 GATCGGTAGGAGGACTCTCAG 58.500 57.143 0.00 0.00 41.69 3.35
408 409 0.547075 TCGGTAGGAGGACTCTCAGG 59.453 60.000 0.00 0.00 41.69 3.86
409 410 1.104577 CGGTAGGAGGACTCTCAGGC 61.105 65.000 0.00 0.00 41.69 4.85
410 411 1.104577 GGTAGGAGGACTCTCAGGCG 61.105 65.000 0.00 0.00 41.69 5.52
411 412 0.107116 GTAGGAGGACTCTCAGGCGA 60.107 60.000 0.00 0.00 41.69 5.54
412 413 0.847373 TAGGAGGACTCTCAGGCGAT 59.153 55.000 0.00 0.00 41.69 4.58
413 414 0.754957 AGGAGGACTCTCAGGCGATG 60.755 60.000 0.00 0.00 41.69 3.84
414 415 1.739049 GAGGACTCTCAGGCGATGG 59.261 63.158 0.00 0.00 39.74 3.51
415 416 1.743321 GAGGACTCTCAGGCGATGGG 61.743 65.000 0.00 0.00 39.74 4.00
416 417 1.758514 GGACTCTCAGGCGATGGGA 60.759 63.158 0.00 0.00 35.43 4.37
417 418 1.118356 GGACTCTCAGGCGATGGGAT 61.118 60.000 0.00 0.00 37.92 3.85
418 419 0.316841 GACTCTCAGGCGATGGGATC 59.683 60.000 0.00 0.00 37.92 3.36
428 429 0.808125 CGATGGGATCGCTAGAGAGG 59.192 60.000 11.46 0.00 46.55 3.69
429 430 1.611936 CGATGGGATCGCTAGAGAGGA 60.612 57.143 11.46 0.00 46.55 3.71
430 431 2.091541 GATGGGATCGCTAGAGAGGAG 58.908 57.143 11.46 0.00 0.00 3.69
431 432 1.141185 TGGGATCGCTAGAGAGGAGA 58.859 55.000 11.46 0.00 0.00 3.71
432 433 1.495148 TGGGATCGCTAGAGAGGAGAA 59.505 52.381 11.46 0.00 0.00 2.87
433 434 2.091830 TGGGATCGCTAGAGAGGAGAAA 60.092 50.000 11.46 0.00 0.00 2.52
434 435 2.959707 GGGATCGCTAGAGAGGAGAAAA 59.040 50.000 1.80 0.00 0.00 2.29
435 436 3.385111 GGGATCGCTAGAGAGGAGAAAAA 59.615 47.826 1.80 0.00 0.00 1.94
436 437 4.364860 GGATCGCTAGAGAGGAGAAAAAC 58.635 47.826 1.80 0.00 0.00 2.43
437 438 3.870633 TCGCTAGAGAGGAGAAAAACC 57.129 47.619 0.00 0.00 0.00 3.27
438 439 2.496470 TCGCTAGAGAGGAGAAAAACCC 59.504 50.000 0.00 0.00 0.00 4.11
439 440 2.498078 CGCTAGAGAGGAGAAAAACCCT 59.502 50.000 0.00 0.00 35.02 4.34
440 441 3.700038 CGCTAGAGAGGAGAAAAACCCTA 59.300 47.826 0.00 0.00 31.84 3.53
441 442 4.202070 CGCTAGAGAGGAGAAAAACCCTAG 60.202 50.000 0.00 0.00 31.84 3.02
442 443 4.442332 GCTAGAGAGGAGAAAAACCCTAGC 60.442 50.000 0.00 0.00 40.35 3.42
443 444 2.841266 AGAGAGGAGAAAAACCCTAGCC 59.159 50.000 0.00 0.00 31.84 3.93
444 445 2.841266 GAGAGGAGAAAAACCCTAGCCT 59.159 50.000 0.00 0.00 31.84 4.58
445 446 3.261083 AGAGGAGAAAAACCCTAGCCTT 58.739 45.455 0.00 0.00 31.84 4.35
446 447 3.009584 AGAGGAGAAAAACCCTAGCCTTG 59.990 47.826 0.00 0.00 31.84 3.61
447 448 2.041755 AGGAGAAAAACCCTAGCCTTGG 59.958 50.000 0.00 0.00 0.00 3.61
448 449 1.819288 GAGAAAAACCCTAGCCTTGGC 59.181 52.381 2.97 2.97 0.00 4.52
449 450 0.526211 GAAAAACCCTAGCCTTGGCG 59.474 55.000 5.95 0.00 0.00 5.69
450 451 0.178973 AAAAACCCTAGCCTTGGCGT 60.179 50.000 5.95 0.00 0.00 5.68
451 452 0.694196 AAAACCCTAGCCTTGGCGTA 59.306 50.000 5.95 0.00 0.00 4.42
452 453 0.252197 AAACCCTAGCCTTGGCGTAG 59.748 55.000 5.95 8.21 0.00 3.51
453 454 1.623542 AACCCTAGCCTTGGCGTAGG 61.624 60.000 20.46 20.46 38.40 3.18
454 455 2.808206 CCCTAGCCTTGGCGTAGGG 61.808 68.421 26.50 26.50 45.63 3.53
455 456 2.808206 CCTAGCCTTGGCGTAGGGG 61.808 68.421 20.01 10.86 35.74 4.79
456 457 1.760875 CTAGCCTTGGCGTAGGGGA 60.761 63.158 5.95 0.00 35.74 4.81
457 458 1.306312 TAGCCTTGGCGTAGGGGAA 60.306 57.895 5.95 0.00 35.74 3.97
458 459 0.910566 TAGCCTTGGCGTAGGGGAAA 60.911 55.000 5.95 0.00 35.74 3.13
459 460 1.303806 GCCTTGGCGTAGGGGAAAA 60.304 57.895 7.49 0.00 35.74 2.29
460 461 0.896479 GCCTTGGCGTAGGGGAAAAA 60.896 55.000 7.49 0.00 35.74 1.94
481 482 6.795098 AAAACATGCTTAGACGTTCATACA 57.205 33.333 0.00 0.00 0.00 2.29
482 483 6.985188 AAACATGCTTAGACGTTCATACAT 57.015 33.333 0.00 0.00 0.00 2.29
483 484 6.985188 AACATGCTTAGACGTTCATACATT 57.015 33.333 0.00 0.00 0.00 2.71
484 485 6.985188 ACATGCTTAGACGTTCATACATTT 57.015 33.333 0.00 0.00 0.00 2.32
485 486 7.377766 ACATGCTTAGACGTTCATACATTTT 57.622 32.000 0.00 0.00 0.00 1.82
486 487 7.243487 ACATGCTTAGACGTTCATACATTTTG 58.757 34.615 0.00 0.00 0.00 2.44
487 488 7.119116 ACATGCTTAGACGTTCATACATTTTGA 59.881 33.333 0.00 0.00 0.00 2.69
488 489 7.609760 TGCTTAGACGTTCATACATTTTGAT 57.390 32.000 0.00 0.00 0.00 2.57
489 490 7.463544 TGCTTAGACGTTCATACATTTTGATG 58.536 34.615 0.00 0.00 0.00 3.07
490 491 7.333174 TGCTTAGACGTTCATACATTTTGATGA 59.667 33.333 0.00 0.00 0.00 2.92
491 492 7.636359 GCTTAGACGTTCATACATTTTGATGAC 59.364 37.037 0.00 0.00 31.85 3.06
492 493 6.094739 AGACGTTCATACATTTTGATGACG 57.905 37.500 0.00 0.00 35.07 4.35
493 494 5.867174 AGACGTTCATACATTTTGATGACGA 59.133 36.000 0.00 0.00 34.09 4.20
494 495 6.367695 AGACGTTCATACATTTTGATGACGAA 59.632 34.615 0.00 0.00 34.09 3.85
495 496 6.893759 ACGTTCATACATTTTGATGACGAAA 58.106 32.000 0.00 0.00 34.09 3.46
496 497 7.356540 ACGTTCATACATTTTGATGACGAAAA 58.643 30.769 0.00 0.00 34.09 2.29
497 498 8.020819 ACGTTCATACATTTTGATGACGAAAAT 58.979 29.630 0.00 0.00 34.10 1.82
498 499 8.849490 CGTTCATACATTTTGATGACGAAAATT 58.151 29.630 0.00 0.00 31.96 1.82
584 585 9.643735 ACTTATACTGAAATAGTGCTAGGTAGT 57.356 33.333 0.00 0.00 40.65 2.73
585 586 9.900710 CTTATACTGAAATAGTGCTAGGTAGTG 57.099 37.037 0.00 0.00 40.65 2.74
586 587 7.899648 ATACTGAAATAGTGCTAGGTAGTGT 57.100 36.000 0.00 0.00 40.65 3.55
587 588 6.210287 ACTGAAATAGTGCTAGGTAGTGTC 57.790 41.667 0.00 0.00 38.49 3.67
588 589 5.127356 ACTGAAATAGTGCTAGGTAGTGTCC 59.873 44.000 0.00 0.00 38.49 4.02
589 590 4.097437 TGAAATAGTGCTAGGTAGTGTCCG 59.903 45.833 0.00 0.00 0.00 4.79
590 591 1.386533 TAGTGCTAGGTAGTGTCCGC 58.613 55.000 0.00 0.00 0.00 5.54
591 592 1.226603 GTGCTAGGTAGTGTCCGCG 60.227 63.158 0.00 0.00 0.00 6.46
592 593 1.377594 TGCTAGGTAGTGTCCGCGA 60.378 57.895 8.23 0.00 0.00 5.87
593 594 1.355916 GCTAGGTAGTGTCCGCGAG 59.644 63.158 8.23 0.00 0.00 5.03
633 634 6.952935 AGATAAATTCGACGATAAGATGCC 57.047 37.500 0.00 0.00 0.00 4.40
634 635 6.692486 AGATAAATTCGACGATAAGATGCCT 58.308 36.000 0.00 0.00 0.00 4.75
635 636 7.827701 AGATAAATTCGACGATAAGATGCCTA 58.172 34.615 0.00 0.00 0.00 3.93
636 637 7.755822 AGATAAATTCGACGATAAGATGCCTAC 59.244 37.037 0.00 0.00 0.00 3.18
637 638 4.848562 ATTCGACGATAAGATGCCTACA 57.151 40.909 0.00 0.00 0.00 2.74
638 639 3.898517 TCGACGATAAGATGCCTACAG 57.101 47.619 0.00 0.00 0.00 2.74
639 640 3.211865 TCGACGATAAGATGCCTACAGT 58.788 45.455 0.00 0.00 0.00 3.55
640 641 3.003378 TCGACGATAAGATGCCTACAGTG 59.997 47.826 0.00 0.00 0.00 3.66
641 642 3.003378 CGACGATAAGATGCCTACAGTGA 59.997 47.826 0.00 0.00 0.00 3.41
642 643 4.291783 GACGATAAGATGCCTACAGTGAC 58.708 47.826 0.00 0.00 0.00 3.67
643 644 3.954904 ACGATAAGATGCCTACAGTGACT 59.045 43.478 0.00 0.00 0.00 3.41
644 645 4.402793 ACGATAAGATGCCTACAGTGACTT 59.597 41.667 0.00 0.00 0.00 3.01
645 646 4.979197 CGATAAGATGCCTACAGTGACTTC 59.021 45.833 0.00 0.00 0.00 3.01
646 647 2.949451 AGATGCCTACAGTGACTTCG 57.051 50.000 0.00 0.00 0.00 3.79
647 648 2.171840 AGATGCCTACAGTGACTTCGT 58.828 47.619 0.00 0.00 0.00 3.85
648 649 2.094494 AGATGCCTACAGTGACTTCGTG 60.094 50.000 0.00 0.00 0.00 4.35
649 650 1.324383 TGCCTACAGTGACTTCGTGA 58.676 50.000 0.00 0.00 0.00 4.35
650 651 1.684450 TGCCTACAGTGACTTCGTGAA 59.316 47.619 0.00 0.00 0.00 3.18
651 652 2.299013 TGCCTACAGTGACTTCGTGAAT 59.701 45.455 0.00 0.00 0.00 2.57
652 653 2.924290 GCCTACAGTGACTTCGTGAATC 59.076 50.000 0.00 0.00 0.00 2.52
653 654 3.367498 GCCTACAGTGACTTCGTGAATCT 60.367 47.826 0.00 0.00 0.00 2.40
654 655 4.416620 CCTACAGTGACTTCGTGAATCTC 58.583 47.826 0.00 0.00 0.00 2.75
655 656 4.082733 CCTACAGTGACTTCGTGAATCTCA 60.083 45.833 0.00 0.00 0.00 3.27
656 657 4.322080 ACAGTGACTTCGTGAATCTCAA 57.678 40.909 0.00 0.00 0.00 3.02
657 658 4.302455 ACAGTGACTTCGTGAATCTCAAG 58.698 43.478 0.00 0.00 0.00 3.02
658 659 4.038042 ACAGTGACTTCGTGAATCTCAAGA 59.962 41.667 0.00 0.00 33.23 3.02
659 660 5.167121 CAGTGACTTCGTGAATCTCAAGAT 58.833 41.667 0.00 0.00 35.00 2.40
660 661 5.061933 CAGTGACTTCGTGAATCTCAAGATG 59.938 44.000 0.00 4.66 35.00 2.90
661 662 5.047731 AGTGACTTCGTGAATCTCAAGATGA 60.048 40.000 10.79 0.00 35.00 2.92
662 663 5.809562 GTGACTTCGTGAATCTCAAGATGAT 59.190 40.000 10.79 0.00 35.00 2.45
663 664 5.809051 TGACTTCGTGAATCTCAAGATGATG 59.191 40.000 10.79 0.00 35.00 3.07
664 665 4.569966 ACTTCGTGAATCTCAAGATGATGC 59.430 41.667 10.79 0.00 35.00 3.91
665 666 4.397481 TCGTGAATCTCAAGATGATGCT 57.603 40.909 0.00 0.00 34.49 3.79
666 667 5.520376 TCGTGAATCTCAAGATGATGCTA 57.480 39.130 0.00 0.00 34.49 3.49
667 668 5.906073 TCGTGAATCTCAAGATGATGCTAA 58.094 37.500 0.00 0.00 34.49 3.09
668 669 6.340522 TCGTGAATCTCAAGATGATGCTAAA 58.659 36.000 0.00 0.00 34.49 1.85
669 670 6.818142 TCGTGAATCTCAAGATGATGCTAAAA 59.182 34.615 0.00 0.00 34.49 1.52
670 671 7.334171 TCGTGAATCTCAAGATGATGCTAAAAA 59.666 33.333 0.00 0.00 34.49 1.94
694 695 7.751768 AAGTCAGAGGAGGAAAATAGTTTTG 57.248 36.000 0.00 0.00 31.94 2.44
696 697 6.937465 AGTCAGAGGAGGAAAATAGTTTTGAC 59.063 38.462 6.36 6.36 31.94 3.18
700 701 8.633561 CAGAGGAGGAAAATAGTTTTGACTTTT 58.366 33.333 0.00 0.00 31.94 2.27
765 769 4.074526 GGAGCAGACGCCAGCAGA 62.075 66.667 0.00 0.00 39.83 4.26
766 770 2.813042 GAGCAGACGCCAGCAGAC 60.813 66.667 0.00 0.00 39.83 3.51
767 771 4.731612 AGCAGACGCCAGCAGACG 62.732 66.667 0.00 0.00 39.83 4.18
768 772 4.724602 GCAGACGCCAGCAGACGA 62.725 66.667 0.00 0.00 0.00 4.20
769 773 2.807045 CAGACGCCAGCAGACGAC 60.807 66.667 0.00 0.00 0.00 4.34
770 774 3.295273 AGACGCCAGCAGACGACA 61.295 61.111 0.00 0.00 0.00 4.35
771 775 2.807045 GACGCCAGCAGACGACAG 60.807 66.667 0.00 0.00 0.00 3.51
772 776 3.559657 GACGCCAGCAGACGACAGT 62.560 63.158 0.00 0.00 0.00 3.55
825 839 2.596338 ACGCCTTTTTCACCCCCG 60.596 61.111 0.00 0.00 0.00 5.73
826 840 2.596338 CGCCTTTTTCACCCCCGT 60.596 61.111 0.00 0.00 0.00 5.28
830 844 1.605451 CTTTTTCACCCCCGTCCCC 60.605 63.158 0.00 0.00 0.00 4.81
879 894 0.252197 CGGATTCCCTCCTTCCGTTT 59.748 55.000 2.55 0.00 45.64 3.60
889 904 1.654023 CCTTCCGTTTCCCATTCCGC 61.654 60.000 0.00 0.00 0.00 5.54
901 916 1.614317 CCATTCCGCTCACCTTCCTTT 60.614 52.381 0.00 0.00 0.00 3.11
903 918 0.036306 TTCCGCTCACCTTCCTTTCC 59.964 55.000 0.00 0.00 0.00 3.13
911 926 2.505819 TCACCTTCCTTTCCCTCATAGC 59.494 50.000 0.00 0.00 0.00 2.97
914 929 2.570135 CTTCCTTTCCCTCATAGCTGC 58.430 52.381 0.00 0.00 0.00 5.25
921 936 1.630126 CCCTCATAGCTGCTGGTGGT 61.630 60.000 13.43 0.00 0.00 4.16
922 937 0.254178 CCTCATAGCTGCTGGTGGTT 59.746 55.000 13.43 0.00 0.00 3.67
923 938 1.661341 CTCATAGCTGCTGGTGGTTC 58.339 55.000 13.43 0.00 0.00 3.62
924 939 0.253044 TCATAGCTGCTGGTGGTTCC 59.747 55.000 13.43 0.00 0.00 3.62
932 947 4.323477 TGGTGGTTCCCGGAAGCG 62.323 66.667 21.48 0.00 42.15 4.68
938 953 4.060038 TTCCCGGAAGCGGACGAC 62.060 66.667 0.73 0.00 31.52 4.34
953 968 1.227853 CGACCCATTCCGGATTCCC 60.228 63.158 4.15 0.00 36.56 3.97
984 1005 1.595357 GACCGGTAGTCCAACCCTG 59.405 63.158 7.34 0.00 39.84 4.45
1049 1070 4.514585 GCACCACCACCACCACCA 62.515 66.667 0.00 0.00 0.00 4.17
2003 2024 4.020617 CGTGCCCAGGAGCTTCCA 62.021 66.667 5.21 0.00 39.61 3.53
2164 2185 4.760047 CGCAGTTCCCCCTGGACG 62.760 72.222 0.00 0.00 41.57 4.79
2416 2437 2.754552 TCAAAATGCAGGTGGTATGCTC 59.245 45.455 0.00 0.00 44.17 4.26
2417 2438 1.767759 AAATGCAGGTGGTATGCTCC 58.232 50.000 0.00 0.00 44.17 4.70
2418 2439 0.625316 AATGCAGGTGGTATGCTCCA 59.375 50.000 0.00 0.00 44.17 3.86
2427 2451 1.768275 TGGTATGCTCCACCGATGATT 59.232 47.619 0.00 0.00 39.04 2.57
2454 2478 2.194271 CGGTTGAAATCGAGGTAGCTC 58.806 52.381 12.04 12.04 0.00 4.09
2484 2508 8.040727 TCTGCATAAGTTATACATGTGTCTTGT 58.959 33.333 9.11 0.00 0.00 3.16
2519 2543 3.364964 GGCGTGGCCTTATGATAAAATCG 60.365 47.826 3.32 0.00 46.69 3.34
2638 2669 9.860898 ACTATTGTTTTATTCTTGAAATCTGGC 57.139 29.630 0.00 0.00 0.00 4.85
2643 2674 6.916360 TTTATTCTTGAAATCTGGCTTGGT 57.084 33.333 0.00 0.00 0.00 3.67
2730 2762 1.581447 GCTGTACAGGGCTTGTTGC 59.419 57.895 23.95 6.93 41.29 4.17
2823 2862 0.108851 TGTCGATGGTCATGGTGTCG 60.109 55.000 0.00 0.00 0.00 4.35
2842 2881 2.086869 CGATGAGATGTTTGGGCAACT 58.913 47.619 0.00 0.00 36.21 3.16
3002 3049 2.160205 CTGATGGCCAGATAGCATTGG 58.840 52.381 13.05 0.00 45.78 3.16
3015 3062 7.255977 CCAGATAGCATTGGTAGTACTGTATGT 60.256 40.741 5.39 0.00 0.00 2.29
3016 3063 8.144478 CAGATAGCATTGGTAGTACTGTATGTT 58.856 37.037 5.39 4.62 0.00 2.71
3042 3206 0.461516 TTGTTGGTACGACGGTTGCA 60.462 50.000 0.00 0.00 0.00 4.08
3044 3208 0.598158 GTTGGTACGACGGTTGCAGA 60.598 55.000 0.00 0.00 0.00 4.26
3098 3264 0.323725 AGTTGGGTGCATGCTAAGGG 60.324 55.000 20.33 0.00 0.00 3.95
3114 3280 0.541863 AGGGGCTCTGTTAATGGTCG 59.458 55.000 0.00 0.00 0.00 4.79
3185 3351 2.554370 TTGTAGTTGGCTGTGTACCC 57.446 50.000 0.00 0.00 0.00 3.69
3200 3366 2.240921 TGTACCCAGCATGCATTTCCTA 59.759 45.455 21.98 0.00 31.97 2.94
3201 3367 1.767759 ACCCAGCATGCATTTCCTAC 58.232 50.000 21.98 0.00 31.97 3.18
3202 3368 0.664761 CCCAGCATGCATTTCCTACG 59.335 55.000 21.98 0.00 31.97 3.51
3203 3369 1.382522 CCAGCATGCATTTCCTACGT 58.617 50.000 21.98 0.00 31.97 3.57
3204 3370 1.745087 CCAGCATGCATTTCCTACGTT 59.255 47.619 21.98 0.00 31.97 3.99
3205 3371 2.223340 CCAGCATGCATTTCCTACGTTC 60.223 50.000 21.98 0.00 31.97 3.95
3206 3372 2.679837 CAGCATGCATTTCCTACGTTCT 59.320 45.455 21.98 0.00 0.00 3.01
3207 3373 3.127548 CAGCATGCATTTCCTACGTTCTT 59.872 43.478 21.98 0.00 0.00 2.52
3208 3374 3.758554 AGCATGCATTTCCTACGTTCTTT 59.241 39.130 21.98 0.00 0.00 2.52
3209 3375 3.853671 GCATGCATTTCCTACGTTCTTTG 59.146 43.478 14.21 0.00 0.00 2.77
3210 3376 4.414852 CATGCATTTCCTACGTTCTTTGG 58.585 43.478 0.00 0.00 0.00 3.28
3211 3377 2.817258 TGCATTTCCTACGTTCTTTGGG 59.183 45.455 0.00 0.00 0.00 4.12
3212 3378 2.415491 GCATTTCCTACGTTCTTTGGGC 60.415 50.000 0.00 0.00 0.00 5.36
3213 3379 1.515081 TTTCCTACGTTCTTTGGGCG 58.485 50.000 0.00 0.00 0.00 6.13
3214 3380 0.952010 TTCCTACGTTCTTTGGGCGC 60.952 55.000 0.00 0.00 0.00 6.53
3215 3381 1.669760 CCTACGTTCTTTGGGCGCA 60.670 57.895 10.83 0.00 0.00 6.09
3216 3382 1.495951 CTACGTTCTTTGGGCGCAC 59.504 57.895 10.83 6.04 0.00 5.34
3217 3383 1.225376 CTACGTTCTTTGGGCGCACA 61.225 55.000 9.15 9.15 0.00 4.57
3218 3384 0.604243 TACGTTCTTTGGGCGCACAT 60.604 50.000 15.98 0.00 0.00 3.21
3219 3385 1.285641 CGTTCTTTGGGCGCACATT 59.714 52.632 15.98 0.00 0.00 2.71
3220 3386 0.519519 CGTTCTTTGGGCGCACATTA 59.480 50.000 15.98 3.51 0.00 1.90
3221 3387 1.132262 CGTTCTTTGGGCGCACATTAT 59.868 47.619 15.98 0.00 0.00 1.28
3222 3388 2.791158 CGTTCTTTGGGCGCACATTATC 60.791 50.000 15.98 2.50 0.00 1.75
3223 3389 2.121291 TCTTTGGGCGCACATTATCA 57.879 45.000 15.98 0.00 0.00 2.15
3224 3390 2.016318 TCTTTGGGCGCACATTATCAG 58.984 47.619 15.98 5.00 0.00 2.90
3225 3391 1.745087 CTTTGGGCGCACATTATCAGT 59.255 47.619 15.98 0.00 0.00 3.41
3226 3392 1.093972 TTGGGCGCACATTATCAGTG 58.906 50.000 15.98 0.00 39.92 3.66
3227 3393 0.747644 TGGGCGCACATTATCAGTGG 60.748 55.000 9.15 0.00 37.46 4.00
3229 3395 1.447317 GGCGCACATTATCAGTGGGG 61.447 60.000 10.83 0.00 46.34 4.96
3230 3396 1.447317 GCGCACATTATCAGTGGGGG 61.447 60.000 0.30 0.00 46.34 5.40
3231 3397 0.107214 CGCACATTATCAGTGGGGGT 60.107 55.000 0.00 0.00 43.65 4.95
3232 3398 1.140052 CGCACATTATCAGTGGGGGTA 59.860 52.381 0.00 0.00 43.65 3.69
3246 3412 2.092323 GGGGGTAGCATTGTTCTGTTC 58.908 52.381 0.00 0.00 0.00 3.18
3282 3456 8.284693 AGTTTTTGATCTGTAAATGCATTTTGC 58.715 29.630 28.45 20.83 45.29 3.68
3283 3457 7.966246 TTTTGATCTGTAAATGCATTTTGCT 57.034 28.000 28.45 8.28 45.31 3.91
3284 3458 6.954616 TTGATCTGTAAATGCATTTTGCTG 57.045 33.333 28.45 22.25 45.31 4.41
3285 3459 6.028146 TGATCTGTAAATGCATTTTGCTGT 57.972 33.333 28.45 13.17 45.31 4.40
3286 3460 5.865013 TGATCTGTAAATGCATTTTGCTGTG 59.135 36.000 28.45 13.44 45.31 3.66
3287 3461 4.558178 TCTGTAAATGCATTTTGCTGTGG 58.442 39.130 28.45 12.49 45.31 4.17
3288 3462 3.065655 TGTAAATGCATTTTGCTGTGGC 58.934 40.909 28.45 10.20 45.31 5.01
3289 3463 1.525941 AAATGCATTTTGCTGTGGCC 58.474 45.000 18.99 0.00 45.31 5.36
3290 3464 0.671163 AATGCATTTTGCTGTGGCCG 60.671 50.000 5.99 0.00 45.31 6.13
3291 3465 3.113979 GCATTTTGCTGTGGCCGC 61.114 61.111 10.11 10.11 40.96 6.53
3292 3466 2.432972 CATTTTGCTGTGGCCGCC 60.433 61.111 15.15 1.04 37.74 6.13
3293 3467 4.054825 ATTTTGCTGTGGCCGCCG 62.055 61.111 15.15 8.91 37.74 6.46
3307 3481 3.443045 GCCGCCCAGACAACCATG 61.443 66.667 0.00 0.00 0.00 3.66
3308 3482 3.443045 CCGCCCAGACAACCATGC 61.443 66.667 0.00 0.00 0.00 4.06
3309 3483 2.360350 CGCCCAGACAACCATGCT 60.360 61.111 0.00 0.00 0.00 3.79
3310 3484 2.693762 CGCCCAGACAACCATGCTG 61.694 63.158 0.00 0.00 33.33 4.41
3311 3485 1.604593 GCCCAGACAACCATGCTGT 60.605 57.895 0.00 0.00 32.33 4.40
3312 3486 1.870055 GCCCAGACAACCATGCTGTG 61.870 60.000 3.61 0.00 32.33 3.66
3313 3487 1.582968 CCAGACAACCATGCTGTGC 59.417 57.895 3.61 0.00 32.33 4.57
3314 3488 0.892358 CCAGACAACCATGCTGTGCT 60.892 55.000 3.61 0.00 32.33 4.40
3315 3489 0.956633 CAGACAACCATGCTGTGCTT 59.043 50.000 3.61 0.00 0.00 3.91
3316 3490 0.956633 AGACAACCATGCTGTGCTTG 59.043 50.000 3.61 0.00 34.20 4.01
3322 3496 1.753930 CCATGCTGTGCTTGGTATGA 58.246 50.000 14.01 0.00 45.15 2.15
3323 3497 2.093890 CCATGCTGTGCTTGGTATGAA 58.906 47.619 14.01 0.00 45.15 2.57
3324 3498 2.492881 CCATGCTGTGCTTGGTATGAAA 59.507 45.455 14.01 0.00 45.15 2.69
3325 3499 3.504863 CATGCTGTGCTTGGTATGAAAC 58.495 45.455 0.00 0.00 31.40 2.78
3326 3500 2.580962 TGCTGTGCTTGGTATGAAACA 58.419 42.857 0.00 0.00 0.00 2.83
3327 3501 2.553602 TGCTGTGCTTGGTATGAAACAG 59.446 45.455 0.00 0.00 38.41 3.16
3328 3502 2.554032 GCTGTGCTTGGTATGAAACAGT 59.446 45.455 0.00 0.00 37.83 3.55
3329 3503 3.365364 GCTGTGCTTGGTATGAAACAGTC 60.365 47.826 0.00 0.00 37.83 3.51
3330 3504 3.814625 TGTGCTTGGTATGAAACAGTCA 58.185 40.909 0.00 0.00 41.67 3.41
3332 3506 4.216042 TGTGCTTGGTATGAAACAGTCATG 59.784 41.667 0.00 0.00 46.85 3.07
3333 3507 4.216257 GTGCTTGGTATGAAACAGTCATGT 59.784 41.667 0.00 0.00 46.85 3.21
3334 3508 4.216042 TGCTTGGTATGAAACAGTCATGTG 59.784 41.667 0.00 0.00 46.85 3.21
3335 3509 4.455533 GCTTGGTATGAAACAGTCATGTGA 59.544 41.667 0.00 0.00 46.85 3.58
3336 3510 5.048782 GCTTGGTATGAAACAGTCATGTGAA 60.049 40.000 0.00 0.00 46.85 3.18
3337 3511 6.558771 TTGGTATGAAACAGTCATGTGAAG 57.441 37.500 0.00 0.00 46.85 3.02
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 1.140161 CTCGGCGATTGGGAACGTA 59.860 57.895 11.27 0.00 0.00 3.57
1 2 2.125673 CTCGGCGATTGGGAACGT 60.126 61.111 11.27 0.00 0.00 3.99
3 4 1.079405 TGTCTCGGCGATTGGGAAC 60.079 57.895 11.27 3.03 0.00 3.62
4 5 1.079405 GTGTCTCGGCGATTGGGAA 60.079 57.895 11.27 0.00 0.00 3.97
5 6 1.945354 GAGTGTCTCGGCGATTGGGA 61.945 60.000 11.27 0.14 0.00 4.37
8 9 1.416813 GCAGAGTGTCTCGGCGATTG 61.417 60.000 11.27 0.00 41.14 2.67
9 10 1.153745 GCAGAGTGTCTCGGCGATT 60.154 57.895 11.27 0.00 41.14 3.34
10 11 2.492090 GCAGAGTGTCTCGGCGAT 59.508 61.111 11.27 0.00 41.14 4.58
14 15 0.389166 GTTCAGGCAGAGTGTCTCGG 60.389 60.000 0.00 0.00 35.36 4.63
15 16 0.600557 AGTTCAGGCAGAGTGTCTCG 59.399 55.000 0.00 0.00 35.36 4.04
16 17 2.414824 CGTAGTTCAGGCAGAGTGTCTC 60.415 54.545 0.00 0.00 23.66 3.36
17 18 1.542030 CGTAGTTCAGGCAGAGTGTCT 59.458 52.381 0.00 0.00 28.47 3.41
18 19 1.540267 TCGTAGTTCAGGCAGAGTGTC 59.460 52.381 0.00 0.00 0.00 3.67
19 20 1.617322 TCGTAGTTCAGGCAGAGTGT 58.383 50.000 0.00 0.00 0.00 3.55
20 21 2.229062 TCTTCGTAGTTCAGGCAGAGTG 59.771 50.000 0.00 0.00 0.00 3.51
21 22 2.229302 GTCTTCGTAGTTCAGGCAGAGT 59.771 50.000 0.00 0.00 0.00 3.24
22 23 2.729467 CGTCTTCGTAGTTCAGGCAGAG 60.729 54.545 0.00 0.00 0.00 3.35
23 24 1.199327 CGTCTTCGTAGTTCAGGCAGA 59.801 52.381 0.00 0.00 0.00 4.26
24 25 1.618861 CGTCTTCGTAGTTCAGGCAG 58.381 55.000 0.00 0.00 0.00 4.85
25 26 3.786809 CGTCTTCGTAGTTCAGGCA 57.213 52.632 0.00 0.00 0.00 4.75
36 37 1.602877 CGTCGGACCAAACGTCTTCG 61.603 60.000 1.91 0.00 41.64 3.79
37 38 1.280206 CCGTCGGACCAAACGTCTTC 61.280 60.000 4.91 0.00 41.64 2.87
38 39 1.300388 CCGTCGGACCAAACGTCTT 60.300 57.895 4.91 0.00 41.64 3.01
39 40 2.337532 CCGTCGGACCAAACGTCT 59.662 61.111 4.91 0.00 41.64 4.18
40 41 2.735857 CCCGTCGGACCAAACGTC 60.736 66.667 14.39 0.00 41.15 4.34
41 42 3.504524 GACCCGTCGGACCAAACGT 62.505 63.158 14.39 0.00 37.19 3.99
42 43 2.735857 GACCCGTCGGACCAAACG 60.736 66.667 14.39 8.99 38.58 3.60
73 74 0.716108 CTGCTTAGAACACGGCGAAG 59.284 55.000 16.62 8.41 0.00 3.79
74 75 1.289109 GCTGCTTAGAACACGGCGAA 61.289 55.000 16.62 0.00 0.00 4.70
75 76 1.736645 GCTGCTTAGAACACGGCGA 60.737 57.895 16.62 0.00 0.00 5.54
76 77 2.027073 TGCTGCTTAGAACACGGCG 61.027 57.895 4.80 4.80 38.56 6.46
77 78 1.497722 GTGCTGCTTAGAACACGGC 59.502 57.895 0.00 0.00 36.21 5.68
80 81 0.798776 ATGCGTGCTGCTTAGAACAC 59.201 50.000 0.00 0.00 46.63 3.32
81 82 2.378445 TATGCGTGCTGCTTAGAACA 57.622 45.000 0.00 0.00 46.63 3.18
82 83 2.221981 GGATATGCGTGCTGCTTAGAAC 59.778 50.000 0.00 0.00 46.63 3.01
83 84 2.103094 AGGATATGCGTGCTGCTTAGAA 59.897 45.455 0.00 0.00 46.63 2.10
84 85 1.688735 AGGATATGCGTGCTGCTTAGA 59.311 47.619 0.00 0.00 46.63 2.10
85 86 2.160822 AGGATATGCGTGCTGCTTAG 57.839 50.000 0.00 0.00 46.63 2.18
86 87 2.212652 CAAGGATATGCGTGCTGCTTA 58.787 47.619 0.00 2.01 46.63 3.09
87 88 1.019673 CAAGGATATGCGTGCTGCTT 58.980 50.000 0.00 0.00 46.63 3.91
88 89 0.107508 ACAAGGATATGCGTGCTGCT 60.108 50.000 9.94 0.00 46.63 4.24
89 90 1.528586 CTACAAGGATATGCGTGCTGC 59.471 52.381 9.94 0.00 46.70 5.25
90 91 3.097877 TCTACAAGGATATGCGTGCTG 57.902 47.619 9.94 3.82 0.00 4.41
91 92 3.458189 GTTCTACAAGGATATGCGTGCT 58.542 45.455 9.94 1.21 0.00 4.40
92 93 2.218759 CGTTCTACAAGGATATGCGTGC 59.781 50.000 9.94 0.00 0.00 5.34
93 94 3.444916 ACGTTCTACAAGGATATGCGTG 58.555 45.455 8.54 8.54 0.00 5.34
94 95 3.703420 GACGTTCTACAAGGATATGCGT 58.297 45.455 0.00 0.00 0.00 5.24
95 96 2.719556 CGACGTTCTACAAGGATATGCG 59.280 50.000 0.00 0.00 0.00 4.73
96 97 3.703420 ACGACGTTCTACAAGGATATGC 58.297 45.455 0.00 0.00 0.00 3.14
97 98 3.966844 CGACGACGTTCTACAAGGATATG 59.033 47.826 0.13 0.00 34.56 1.78
98 99 3.003068 CCGACGACGTTCTACAAGGATAT 59.997 47.826 0.13 0.00 37.88 1.63
99 100 2.352651 CCGACGACGTTCTACAAGGATA 59.647 50.000 0.13 0.00 37.88 2.59
100 101 1.131883 CCGACGACGTTCTACAAGGAT 59.868 52.381 0.13 0.00 37.88 3.24
101 102 0.518636 CCGACGACGTTCTACAAGGA 59.481 55.000 0.13 0.00 37.88 3.36
102 103 0.455633 CCCGACGACGTTCTACAAGG 60.456 60.000 0.13 0.00 37.88 3.61
103 104 1.069378 GCCCGACGACGTTCTACAAG 61.069 60.000 0.13 0.00 37.88 3.16
104 105 1.081242 GCCCGACGACGTTCTACAA 60.081 57.895 0.13 0.00 37.88 2.41
105 106 0.673333 TAGCCCGACGACGTTCTACA 60.673 55.000 0.13 0.00 37.88 2.74
106 107 0.447801 TTAGCCCGACGACGTTCTAC 59.552 55.000 0.13 0.00 37.88 2.59
107 108 1.131126 CTTTAGCCCGACGACGTTCTA 59.869 52.381 0.13 4.34 37.88 2.10
108 109 0.109412 CTTTAGCCCGACGACGTTCT 60.109 55.000 0.13 5.29 37.88 3.01
109 110 1.074872 CCTTTAGCCCGACGACGTTC 61.075 60.000 0.13 0.00 37.88 3.95
110 111 1.080298 CCTTTAGCCCGACGACGTT 60.080 57.895 0.13 0.00 37.88 3.99
111 112 1.809567 AACCTTTAGCCCGACGACGT 61.810 55.000 0.00 0.00 37.88 4.34
112 113 0.668401 AAACCTTTAGCCCGACGACG 60.668 55.000 0.00 0.00 39.43 5.12
113 114 1.516161 AAAACCTTTAGCCCGACGAC 58.484 50.000 0.00 0.00 0.00 4.34
114 115 1.874872 CAAAAACCTTTAGCCCGACGA 59.125 47.619 0.00 0.00 0.00 4.20
115 116 1.664874 GCAAAAACCTTTAGCCCGACG 60.665 52.381 0.00 0.00 0.00 5.12
116 117 1.336517 GGCAAAAACCTTTAGCCCGAC 60.337 52.381 0.00 0.00 34.90 4.79
117 118 0.963225 GGCAAAAACCTTTAGCCCGA 59.037 50.000 0.00 0.00 34.90 5.14
118 119 0.388006 CGGCAAAAACCTTTAGCCCG 60.388 55.000 0.00 0.00 36.31 6.13
119 120 0.677288 ACGGCAAAAACCTTTAGCCC 59.323 50.000 0.00 0.00 36.31 5.19
120 121 3.191791 TCATACGGCAAAAACCTTTAGCC 59.808 43.478 0.00 0.00 36.32 3.93
121 122 4.428615 TCATACGGCAAAAACCTTTAGC 57.571 40.909 0.00 0.00 0.00 3.09
122 123 5.158494 GGTTCATACGGCAAAAACCTTTAG 58.842 41.667 0.00 0.00 37.10 1.85
123 124 4.022155 GGGTTCATACGGCAAAAACCTTTA 60.022 41.667 0.00 0.00 39.45 1.85
124 125 3.243941 GGGTTCATACGGCAAAAACCTTT 60.244 43.478 0.00 0.00 39.45 3.11
125 126 2.297880 GGGTTCATACGGCAAAAACCTT 59.702 45.455 0.00 0.00 39.45 3.50
126 127 1.890489 GGGTTCATACGGCAAAAACCT 59.110 47.619 0.00 0.00 39.45 3.50
127 128 1.890489 AGGGTTCATACGGCAAAAACC 59.110 47.619 0.00 0.00 38.90 3.27
128 129 3.427098 GCTAGGGTTCATACGGCAAAAAC 60.427 47.826 0.00 0.00 0.00 2.43
129 130 2.750712 GCTAGGGTTCATACGGCAAAAA 59.249 45.455 0.00 0.00 0.00 1.94
130 131 2.361789 GCTAGGGTTCATACGGCAAAA 58.638 47.619 0.00 0.00 0.00 2.44
131 132 1.407712 GGCTAGGGTTCATACGGCAAA 60.408 52.381 0.00 0.00 0.00 3.68
132 133 0.179468 GGCTAGGGTTCATACGGCAA 59.821 55.000 0.00 0.00 0.00 4.52
133 134 0.978667 TGGCTAGGGTTCATACGGCA 60.979 55.000 0.00 0.00 0.00 5.69
134 135 0.249911 CTGGCTAGGGTTCATACGGC 60.250 60.000 0.00 0.00 0.00 5.68
135 136 0.393077 CCTGGCTAGGGTTCATACGG 59.607 60.000 8.57 0.00 40.63 4.02
136 137 3.989104 CCTGGCTAGGGTTCATACG 57.011 57.895 8.57 0.00 40.63 3.06
155 156 0.806492 GAAGGTGTACGCTGGCTAGC 60.806 60.000 12.81 12.81 46.62 3.42
156 157 0.525668 CGAAGGTGTACGCTGGCTAG 60.526 60.000 6.35 0.00 0.00 3.42
157 158 1.246056 ACGAAGGTGTACGCTGGCTA 61.246 55.000 6.35 0.00 0.00 3.93
158 159 2.095978 AACGAAGGTGTACGCTGGCT 62.096 55.000 6.35 0.00 0.00 4.75
159 160 1.623973 GAACGAAGGTGTACGCTGGC 61.624 60.000 6.35 0.00 0.00 4.85
160 161 0.319211 TGAACGAAGGTGTACGCTGG 60.319 55.000 6.35 0.00 0.00 4.85
161 162 0.782384 GTGAACGAAGGTGTACGCTG 59.218 55.000 6.35 0.00 0.00 5.18
162 163 0.319297 GGTGAACGAAGGTGTACGCT 60.319 55.000 6.35 0.00 0.00 5.07
163 164 2.147820 GGTGAACGAAGGTGTACGC 58.852 57.895 0.00 0.00 0.00 4.42
175 176 2.884207 GACGATCCGGCGGTGAAC 60.884 66.667 27.32 14.09 35.12 3.18
176 177 4.137872 GGACGATCCGGCGGTGAA 62.138 66.667 27.32 7.13 34.63 3.18
178 179 4.570663 GAGGACGATCCGGCGGTG 62.571 72.222 27.32 18.87 42.75 4.94
179 180 4.816984 AGAGGACGATCCGGCGGT 62.817 66.667 27.32 13.58 42.75 5.68
180 181 3.486252 GAAGAGGACGATCCGGCGG 62.486 68.421 22.51 22.51 42.75 6.13
181 182 2.026301 GAAGAGGACGATCCGGCG 59.974 66.667 0.00 0.00 42.75 6.46
182 183 0.105039 ATTGAAGAGGACGATCCGGC 59.895 55.000 0.00 0.00 42.75 6.13
183 184 1.409064 TGATTGAAGAGGACGATCCGG 59.591 52.381 0.00 0.00 42.75 5.14
184 185 2.464865 GTGATTGAAGAGGACGATCCG 58.535 52.381 0.00 0.00 42.75 4.18
185 186 2.168521 TGGTGATTGAAGAGGACGATCC 59.831 50.000 0.00 0.00 36.58 3.36
186 187 3.131223 TCTGGTGATTGAAGAGGACGATC 59.869 47.826 0.00 0.00 0.00 3.69
187 188 3.099905 TCTGGTGATTGAAGAGGACGAT 58.900 45.455 0.00 0.00 0.00 3.73
188 189 2.525368 TCTGGTGATTGAAGAGGACGA 58.475 47.619 0.00 0.00 0.00 4.20
189 190 3.118992 TGATCTGGTGATTGAAGAGGACG 60.119 47.826 0.00 0.00 32.19 4.79
190 191 4.478206 TGATCTGGTGATTGAAGAGGAC 57.522 45.455 0.00 0.00 32.19 3.85
191 192 4.202192 CGATGATCTGGTGATTGAAGAGGA 60.202 45.833 0.00 0.00 32.19 3.71
192 193 4.056740 CGATGATCTGGTGATTGAAGAGG 58.943 47.826 0.00 0.00 32.19 3.69
193 194 4.941657 TCGATGATCTGGTGATTGAAGAG 58.058 43.478 0.00 0.00 32.19 2.85
194 195 5.105187 ACTTCGATGATCTGGTGATTGAAGA 60.105 40.000 20.02 0.00 35.06 2.87
195 196 5.114780 ACTTCGATGATCTGGTGATTGAAG 58.885 41.667 13.74 13.74 35.95 3.02
196 197 5.089970 ACTTCGATGATCTGGTGATTGAA 57.910 39.130 5.16 0.00 32.19 2.69
197 198 4.403752 AGACTTCGATGATCTGGTGATTGA 59.596 41.667 5.16 0.00 32.19 2.57
198 199 4.507021 CAGACTTCGATGATCTGGTGATTG 59.493 45.833 16.28 0.00 36.92 2.67
199 200 4.691175 CAGACTTCGATGATCTGGTGATT 58.309 43.478 16.28 0.00 36.92 2.57
200 201 3.492309 GCAGACTTCGATGATCTGGTGAT 60.492 47.826 21.18 0.00 40.23 3.06
201 202 2.159184 GCAGACTTCGATGATCTGGTGA 60.159 50.000 21.18 0.00 40.23 4.02
202 203 2.200067 GCAGACTTCGATGATCTGGTG 58.800 52.381 21.18 7.81 40.23 4.17
203 204 1.827344 TGCAGACTTCGATGATCTGGT 59.173 47.619 21.18 2.18 40.23 4.00
204 205 2.591571 TGCAGACTTCGATGATCTGG 57.408 50.000 21.18 10.95 40.23 3.86
205 206 3.979948 AGATGCAGACTTCGATGATCTG 58.020 45.455 18.20 18.20 42.33 2.90
206 207 4.501229 GGAAGATGCAGACTTCGATGATCT 60.501 45.833 21.68 0.00 42.96 2.75
207 208 3.740321 GGAAGATGCAGACTTCGATGATC 59.260 47.826 21.68 9.70 42.96 2.92
208 209 3.133542 TGGAAGATGCAGACTTCGATGAT 59.866 43.478 21.68 0.00 42.96 2.45
209 210 2.497273 TGGAAGATGCAGACTTCGATGA 59.503 45.455 21.68 9.50 42.96 2.92
210 211 2.864946 CTGGAAGATGCAGACTTCGATG 59.135 50.000 21.68 14.05 42.96 3.84
211 212 2.762887 TCTGGAAGATGCAGACTTCGAT 59.237 45.455 21.68 0.00 39.98 3.59
212 213 2.171003 TCTGGAAGATGCAGACTTCGA 58.829 47.619 21.68 18.80 39.98 3.71
213 214 2.662006 TCTGGAAGATGCAGACTTCG 57.338 50.000 21.68 13.64 39.98 3.79
224 225 3.703001 GGAACAACTCCATCTGGAAGA 57.297 47.619 0.00 0.00 44.91 2.87
240 241 4.082125 AGATCTTGGTGGTTTCATGGAAC 58.918 43.478 8.50 8.50 0.00 3.62
241 242 4.081406 CAGATCTTGGTGGTTTCATGGAA 58.919 43.478 0.00 0.00 0.00 3.53
242 243 3.689347 CAGATCTTGGTGGTTTCATGGA 58.311 45.455 0.00 0.00 0.00 3.41
243 244 2.165030 GCAGATCTTGGTGGTTTCATGG 59.835 50.000 0.00 0.00 0.00 3.66
244 245 2.165030 GGCAGATCTTGGTGGTTTCATG 59.835 50.000 0.00 0.00 0.00 3.07
245 246 2.450476 GGCAGATCTTGGTGGTTTCAT 58.550 47.619 0.00 0.00 0.00 2.57
246 247 1.881925 CGGCAGATCTTGGTGGTTTCA 60.882 52.381 0.00 0.00 0.00 2.69
247 248 0.804989 CGGCAGATCTTGGTGGTTTC 59.195 55.000 0.00 0.00 0.00 2.78
248 249 1.244019 GCGGCAGATCTTGGTGGTTT 61.244 55.000 0.00 0.00 0.00 3.27
249 250 1.675641 GCGGCAGATCTTGGTGGTT 60.676 57.895 0.00 0.00 0.00 3.67
250 251 2.045926 GCGGCAGATCTTGGTGGT 60.046 61.111 0.00 0.00 0.00 4.16
251 252 2.825836 GGCGGCAGATCTTGGTGG 60.826 66.667 3.07 0.00 0.00 4.61
252 253 1.377725 AAGGCGGCAGATCTTGGTG 60.378 57.895 13.08 0.00 0.00 4.17
253 254 1.377725 CAAGGCGGCAGATCTTGGT 60.378 57.895 13.08 0.00 35.53 3.67
254 255 3.506108 CAAGGCGGCAGATCTTGG 58.494 61.111 13.08 0.00 35.53 3.61
255 256 3.506108 CCAAGGCGGCAGATCTTG 58.494 61.111 13.08 6.32 38.01 3.02
277 278 3.952628 GAGTAGTGGTGGTGGCGGC 62.953 68.421 0.00 0.00 0.00 6.53
278 279 2.264794 GAGTAGTGGTGGTGGCGG 59.735 66.667 0.00 0.00 0.00 6.13
279 280 2.126071 CGAGTAGTGGTGGTGGCG 60.126 66.667 0.00 0.00 0.00 5.69
280 281 1.080025 GACGAGTAGTGGTGGTGGC 60.080 63.158 0.00 0.00 0.00 5.01
281 282 1.590147 GGACGAGTAGTGGTGGTGG 59.410 63.158 0.00 0.00 0.00 4.61
282 283 1.590147 GGGACGAGTAGTGGTGGTG 59.410 63.158 0.00 0.00 0.00 4.17
283 284 4.108673 GGGACGAGTAGTGGTGGT 57.891 61.111 0.00 0.00 0.00 4.16
296 297 1.142748 CTGATGCTCTGTCCGGGAC 59.857 63.158 20.36 20.36 0.00 4.46
297 298 2.725312 GCTGATGCTCTGTCCGGGA 61.725 63.158 0.00 0.00 36.03 5.14
298 299 2.202987 GCTGATGCTCTGTCCGGG 60.203 66.667 0.00 0.00 36.03 5.73
299 300 2.202987 GGCTGATGCTCTGTCCGG 60.203 66.667 0.00 0.00 39.59 5.14
300 301 1.812922 GTGGCTGATGCTCTGTCCG 60.813 63.158 0.00 0.00 39.59 4.79
301 302 1.451028 GGTGGCTGATGCTCTGTCC 60.451 63.158 0.00 0.00 39.59 4.02
302 303 0.743701 CAGGTGGCTGATGCTCTGTC 60.744 60.000 0.00 0.00 39.59 3.51
303 304 1.196766 TCAGGTGGCTGATGCTCTGT 61.197 55.000 0.00 0.00 39.59 3.41
304 305 0.180642 ATCAGGTGGCTGATGCTCTG 59.819 55.000 0.00 0.00 41.95 3.35
305 306 0.469070 GATCAGGTGGCTGATGCTCT 59.531 55.000 0.00 0.00 43.38 4.09
306 307 0.534652 GGATCAGGTGGCTGATGCTC 60.535 60.000 0.00 0.00 45.01 4.26
307 308 1.530771 GGATCAGGTGGCTGATGCT 59.469 57.895 0.00 0.00 45.01 3.79
308 309 4.154296 GGATCAGGTGGCTGATGC 57.846 61.111 0.00 0.00 43.38 3.91
309 310 1.876837 CGATGGATCAGGTGGCTGATG 60.877 57.143 0.00 0.00 43.38 3.07
310 311 0.395686 CGATGGATCAGGTGGCTGAT 59.604 55.000 0.00 0.00 45.71 2.90
311 312 0.977627 ACGATGGATCAGGTGGCTGA 60.978 55.000 0.00 0.00 37.79 4.26
312 313 0.531532 GACGATGGATCAGGTGGCTG 60.532 60.000 0.00 0.00 0.00 4.85
313 314 1.690219 GGACGATGGATCAGGTGGCT 61.690 60.000 0.00 0.00 0.00 4.75
314 315 1.227674 GGACGATGGATCAGGTGGC 60.228 63.158 0.00 0.00 0.00 5.01
315 316 1.447643 GGGACGATGGATCAGGTGG 59.552 63.158 0.00 0.00 0.00 4.61
316 317 1.447643 GGGGACGATGGATCAGGTG 59.552 63.158 0.00 0.00 0.00 4.00
317 318 3.971894 GGGGACGATGGATCAGGT 58.028 61.111 0.00 0.00 0.00 4.00
354 355 3.518998 TAGGGCTCGCGTGCTCTC 61.519 66.667 35.99 22.05 40.13 3.20
355 356 3.827898 GTAGGGCTCGCGTGCTCT 61.828 66.667 34.56 34.56 46.73 4.09
359 360 4.554363 CCTCGTAGGGCTCGCGTG 62.554 72.222 5.77 4.44 0.00 5.34
368 369 0.739561 CGAAGAACCTCCCTCGTAGG 59.260 60.000 0.00 0.00 40.20 3.18
369 370 1.747709 TCGAAGAACCTCCCTCGTAG 58.252 55.000 0.00 0.00 0.00 3.51
370 371 2.295885 GATCGAAGAACCTCCCTCGTA 58.704 52.381 0.00 0.00 43.58 3.43
371 372 1.104630 GATCGAAGAACCTCCCTCGT 58.895 55.000 0.00 0.00 43.58 4.18
372 373 0.029567 CGATCGAAGAACCTCCCTCG 59.970 60.000 10.26 0.00 43.58 4.63
373 374 0.386113 CCGATCGAAGAACCTCCCTC 59.614 60.000 18.66 0.00 43.58 4.30
374 375 0.324460 ACCGATCGAAGAACCTCCCT 60.324 55.000 18.66 0.00 43.58 4.20
375 376 1.337387 CTACCGATCGAAGAACCTCCC 59.663 57.143 18.66 0.00 43.58 4.30
376 377 1.337387 CCTACCGATCGAAGAACCTCC 59.663 57.143 18.66 0.00 43.58 4.30
377 378 2.291190 CTCCTACCGATCGAAGAACCTC 59.709 54.545 18.66 0.00 43.58 3.85
378 379 2.299521 CTCCTACCGATCGAAGAACCT 58.700 52.381 18.66 0.00 43.58 3.50
379 380 1.337387 CCTCCTACCGATCGAAGAACC 59.663 57.143 18.66 0.00 43.58 3.62
380 381 2.033174 GTCCTCCTACCGATCGAAGAAC 59.967 54.545 18.66 6.58 43.58 3.01
381 382 2.092538 AGTCCTCCTACCGATCGAAGAA 60.093 50.000 18.66 0.00 43.58 2.52
382 383 1.489649 AGTCCTCCTACCGATCGAAGA 59.510 52.381 18.66 6.44 45.75 2.87
383 384 1.874872 GAGTCCTCCTACCGATCGAAG 59.125 57.143 18.66 13.26 0.00 3.79
384 385 1.489649 AGAGTCCTCCTACCGATCGAA 59.510 52.381 18.66 3.06 0.00 3.71
385 386 1.070445 GAGAGTCCTCCTACCGATCGA 59.930 57.143 18.66 0.00 33.30 3.59
386 387 1.202663 TGAGAGTCCTCCTACCGATCG 60.203 57.143 8.51 8.51 38.66 3.69
387 388 2.500229 CTGAGAGTCCTCCTACCGATC 58.500 57.143 0.00 0.00 38.66 3.69
388 389 1.144093 CCTGAGAGTCCTCCTACCGAT 59.856 57.143 0.00 0.00 38.66 4.18
389 390 0.547075 CCTGAGAGTCCTCCTACCGA 59.453 60.000 0.00 0.00 38.66 4.69
390 391 1.104577 GCCTGAGAGTCCTCCTACCG 61.105 65.000 0.00 0.00 38.66 4.02
391 392 1.104577 CGCCTGAGAGTCCTCCTACC 61.105 65.000 0.00 0.00 38.66 3.18
392 393 0.107116 TCGCCTGAGAGTCCTCCTAC 60.107 60.000 0.00 0.00 38.66 3.18
393 394 0.847373 ATCGCCTGAGAGTCCTCCTA 59.153 55.000 0.00 0.00 38.66 2.94
394 395 0.754957 CATCGCCTGAGAGTCCTCCT 60.755 60.000 0.00 0.00 38.66 3.69
395 396 1.739049 CATCGCCTGAGAGTCCTCC 59.261 63.158 0.00 0.00 38.66 4.30
396 397 1.739049 CCATCGCCTGAGAGTCCTC 59.261 63.158 0.00 0.00 39.86 3.71
397 398 1.760086 CCCATCGCCTGAGAGTCCT 60.760 63.158 0.00 0.00 0.00 3.85
398 399 1.118356 ATCCCATCGCCTGAGAGTCC 61.118 60.000 0.00 0.00 0.00 3.85
399 400 0.316841 GATCCCATCGCCTGAGAGTC 59.683 60.000 0.00 0.00 0.00 3.36
400 401 1.459455 CGATCCCATCGCCTGAGAGT 61.459 60.000 0.00 0.00 46.55 3.24
401 402 1.288439 CGATCCCATCGCCTGAGAG 59.712 63.158 0.00 0.00 46.55 3.20
402 403 3.448194 CGATCCCATCGCCTGAGA 58.552 61.111 0.00 0.00 46.55 3.27
410 411 2.091541 CTCCTCTCTAGCGATCCCATC 58.908 57.143 0.00 0.00 0.00 3.51
411 412 1.707989 TCTCCTCTCTAGCGATCCCAT 59.292 52.381 0.00 0.00 0.00 4.00
412 413 1.141185 TCTCCTCTCTAGCGATCCCA 58.859 55.000 0.00 0.00 0.00 4.37
413 414 2.279935 TTCTCCTCTCTAGCGATCCC 57.720 55.000 0.00 0.00 0.00 3.85
414 415 4.364860 GTTTTTCTCCTCTCTAGCGATCC 58.635 47.826 0.00 0.00 0.00 3.36
415 416 4.364860 GGTTTTTCTCCTCTCTAGCGATC 58.635 47.826 0.00 0.00 0.00 3.69
416 417 3.133183 GGGTTTTTCTCCTCTCTAGCGAT 59.867 47.826 0.00 0.00 0.00 4.58
417 418 2.496470 GGGTTTTTCTCCTCTCTAGCGA 59.504 50.000 0.00 0.00 0.00 4.93
418 419 2.498078 AGGGTTTTTCTCCTCTCTAGCG 59.502 50.000 0.00 0.00 0.00 4.26
419 420 4.442332 GCTAGGGTTTTTCTCCTCTCTAGC 60.442 50.000 7.07 7.07 40.69 3.42
420 421 4.100344 GGCTAGGGTTTTTCTCCTCTCTAG 59.900 50.000 0.00 0.00 34.75 2.43
421 422 4.031611 GGCTAGGGTTTTTCTCCTCTCTA 58.968 47.826 0.00 0.00 34.75 2.43
422 423 2.841266 GGCTAGGGTTTTTCTCCTCTCT 59.159 50.000 0.00 0.00 34.75 3.10
423 424 2.841266 AGGCTAGGGTTTTTCTCCTCTC 59.159 50.000 0.00 0.00 34.75 3.20
424 425 2.922564 AGGCTAGGGTTTTTCTCCTCT 58.077 47.619 0.00 0.00 34.75 3.69
425 426 3.348119 CAAGGCTAGGGTTTTTCTCCTC 58.652 50.000 0.00 0.00 34.75 3.71
426 427 2.041755 CCAAGGCTAGGGTTTTTCTCCT 59.958 50.000 0.00 0.00 37.18 3.69
427 428 2.447443 CCAAGGCTAGGGTTTTTCTCC 58.553 52.381 0.00 0.00 0.00 3.71
428 429 1.819288 GCCAAGGCTAGGGTTTTTCTC 59.181 52.381 3.29 0.00 38.26 2.87
429 430 1.886655 CGCCAAGGCTAGGGTTTTTCT 60.887 52.381 9.73 0.00 39.32 2.52
430 431 0.526211 CGCCAAGGCTAGGGTTTTTC 59.474 55.000 9.73 0.00 39.32 2.29
431 432 0.178973 ACGCCAAGGCTAGGGTTTTT 60.179 50.000 9.73 0.00 39.32 1.94
432 433 0.694196 TACGCCAAGGCTAGGGTTTT 59.306 50.000 9.73 0.00 39.32 2.43
433 434 0.252197 CTACGCCAAGGCTAGGGTTT 59.748 55.000 9.73 0.57 39.32 3.27
434 435 1.623542 CCTACGCCAAGGCTAGGGTT 61.624 60.000 20.10 0.87 37.84 4.11
435 436 2.064581 CCTACGCCAAGGCTAGGGT 61.065 63.158 20.10 11.14 37.84 4.34
436 437 2.808206 CCCTACGCCAAGGCTAGGG 61.808 68.421 26.78 26.78 45.84 3.53
437 438 2.808206 CCCCTACGCCAAGGCTAGG 61.808 68.421 20.56 20.56 39.48 3.02
438 439 1.335132 TTCCCCTACGCCAAGGCTAG 61.335 60.000 9.73 9.47 39.32 3.42
439 440 0.910566 TTTCCCCTACGCCAAGGCTA 60.911 55.000 9.73 0.35 39.32 3.93
440 441 1.785353 TTTTCCCCTACGCCAAGGCT 61.785 55.000 9.73 0.00 39.32 4.58
441 442 0.896479 TTTTTCCCCTACGCCAAGGC 60.896 55.000 0.00 0.00 35.09 4.35
442 443 3.349879 TTTTTCCCCTACGCCAAGG 57.650 52.632 0.00 0.00 36.30 3.61
457 458 7.197071 TGTATGAACGTCTAAGCATGTTTTT 57.803 32.000 0.00 0.00 0.00 1.94
458 459 6.795098 TGTATGAACGTCTAAGCATGTTTT 57.205 33.333 0.00 0.00 0.00 2.43
459 460 6.985188 ATGTATGAACGTCTAAGCATGTTT 57.015 33.333 0.00 0.00 0.00 2.83
460 461 6.985188 AATGTATGAACGTCTAAGCATGTT 57.015 33.333 0.00 0.00 0.00 2.71
461 462 6.985188 AAATGTATGAACGTCTAAGCATGT 57.015 33.333 0.00 0.00 0.00 3.21
462 463 7.463544 TCAAAATGTATGAACGTCTAAGCATG 58.536 34.615 0.00 0.00 0.00 4.06
463 464 7.609760 TCAAAATGTATGAACGTCTAAGCAT 57.390 32.000 0.00 0.00 0.00 3.79
464 465 7.333174 TCATCAAAATGTATGAACGTCTAAGCA 59.667 33.333 0.00 0.00 34.32 3.91
465 466 7.636359 GTCATCAAAATGTATGAACGTCTAAGC 59.364 37.037 0.00 0.00 34.06 3.09
466 467 7.841277 CGTCATCAAAATGTATGAACGTCTAAG 59.159 37.037 0.00 0.00 34.06 2.18
467 468 7.542824 TCGTCATCAAAATGTATGAACGTCTAA 59.457 33.333 0.00 0.00 34.06 2.10
468 469 7.030768 TCGTCATCAAAATGTATGAACGTCTA 58.969 34.615 0.00 0.00 34.06 2.59
469 470 5.867174 TCGTCATCAAAATGTATGAACGTCT 59.133 36.000 0.00 0.00 34.06 4.18
470 471 6.089920 TCGTCATCAAAATGTATGAACGTC 57.910 37.500 0.00 0.00 34.06 4.34
471 472 6.474819 TTCGTCATCAAAATGTATGAACGT 57.525 33.333 0.00 0.00 34.06 3.99
472 473 7.774224 TTTTCGTCATCAAAATGTATGAACG 57.226 32.000 0.00 0.00 34.06 3.95
558 559 9.643735 ACTACCTAGCACTATTTCAGTATAAGT 57.356 33.333 0.00 0.00 34.98 2.24
559 560 9.900710 CACTACCTAGCACTATTTCAGTATAAG 57.099 37.037 0.00 0.00 34.98 1.73
560 561 9.417561 ACACTACCTAGCACTATTTCAGTATAA 57.582 33.333 0.00 0.00 34.98 0.98
561 562 8.991783 ACACTACCTAGCACTATTTCAGTATA 57.008 34.615 0.00 0.00 34.98 1.47
562 563 7.014422 GGACACTACCTAGCACTATTTCAGTAT 59.986 40.741 0.00 0.00 34.98 2.12
563 564 6.320672 GGACACTACCTAGCACTATTTCAGTA 59.679 42.308 0.00 0.00 34.98 2.74
564 565 5.127356 GGACACTACCTAGCACTATTTCAGT 59.873 44.000 0.00 0.00 38.32 3.41
565 566 5.593010 GGACACTACCTAGCACTATTTCAG 58.407 45.833 0.00 0.00 0.00 3.02
566 567 4.097437 CGGACACTACCTAGCACTATTTCA 59.903 45.833 0.00 0.00 0.00 2.69
567 568 4.608951 CGGACACTACCTAGCACTATTTC 58.391 47.826 0.00 0.00 0.00 2.17
568 569 3.181478 GCGGACACTACCTAGCACTATTT 60.181 47.826 0.00 0.00 0.00 1.40
569 570 2.361438 GCGGACACTACCTAGCACTATT 59.639 50.000 0.00 0.00 0.00 1.73
570 571 1.955080 GCGGACACTACCTAGCACTAT 59.045 52.381 0.00 0.00 0.00 2.12
571 572 1.386533 GCGGACACTACCTAGCACTA 58.613 55.000 0.00 0.00 0.00 2.74
572 573 1.654954 CGCGGACACTACCTAGCACT 61.655 60.000 0.00 0.00 0.00 4.40
573 574 1.226603 CGCGGACACTACCTAGCAC 60.227 63.158 0.00 0.00 0.00 4.40
574 575 1.374343 CTCGCGGACACTACCTAGCA 61.374 60.000 6.13 0.00 0.00 3.49
575 576 1.355916 CTCGCGGACACTACCTAGC 59.644 63.158 6.13 0.00 0.00 3.42
576 577 0.463295 TCCTCGCGGACACTACCTAG 60.463 60.000 6.13 0.00 33.30 3.02
577 578 0.182061 ATCCTCGCGGACACTACCTA 59.818 55.000 6.13 0.00 43.51 3.08
578 579 0.182061 TATCCTCGCGGACACTACCT 59.818 55.000 6.13 0.00 43.51 3.08
579 580 1.027357 TTATCCTCGCGGACACTACC 58.973 55.000 6.13 0.00 43.51 3.18
580 581 2.857592 TTTATCCTCGCGGACACTAC 57.142 50.000 6.13 0.00 43.51 2.73
581 582 4.395959 AAATTTATCCTCGCGGACACTA 57.604 40.909 6.13 0.00 43.51 2.74
582 583 2.981859 AATTTATCCTCGCGGACACT 57.018 45.000 6.13 0.00 43.51 3.55
583 584 3.372822 TCAAAATTTATCCTCGCGGACAC 59.627 43.478 6.13 0.00 43.51 3.67
584 585 3.601435 TCAAAATTTATCCTCGCGGACA 58.399 40.909 6.13 0.00 43.51 4.02
585 586 4.813296 ATCAAAATTTATCCTCGCGGAC 57.187 40.909 6.13 0.00 43.51 4.79
586 587 5.828299 AAATCAAAATTTATCCTCGCGGA 57.172 34.783 6.13 0.00 45.16 5.54
587 588 7.414436 TCTTAAATCAAAATTTATCCTCGCGG 58.586 34.615 6.13 0.00 37.23 6.46
607 608 8.922676 GGCATCTTATCGTCGAATTTATCTTAA 58.077 33.333 0.00 0.00 0.00 1.85
608 609 8.304596 AGGCATCTTATCGTCGAATTTATCTTA 58.695 33.333 0.00 0.00 0.00 2.10
609 610 7.155328 AGGCATCTTATCGTCGAATTTATCTT 58.845 34.615 0.00 0.00 0.00 2.40
610 611 6.692486 AGGCATCTTATCGTCGAATTTATCT 58.308 36.000 0.00 0.00 0.00 1.98
611 612 6.952935 AGGCATCTTATCGTCGAATTTATC 57.047 37.500 0.00 0.00 0.00 1.75
612 613 7.375834 TGTAGGCATCTTATCGTCGAATTTAT 58.624 34.615 0.00 0.00 0.00 1.40
613 614 6.741109 TGTAGGCATCTTATCGTCGAATTTA 58.259 36.000 0.00 0.00 0.00 1.40
614 615 5.597806 TGTAGGCATCTTATCGTCGAATTT 58.402 37.500 0.00 0.00 0.00 1.82
615 616 5.196341 TGTAGGCATCTTATCGTCGAATT 57.804 39.130 0.00 0.00 0.00 2.17
616 617 4.278669 ACTGTAGGCATCTTATCGTCGAAT 59.721 41.667 0.00 0.00 0.00 3.34
617 618 3.630769 ACTGTAGGCATCTTATCGTCGAA 59.369 43.478 0.00 0.00 0.00 3.71
618 619 3.003378 CACTGTAGGCATCTTATCGTCGA 59.997 47.826 0.00 0.00 0.00 4.20
619 620 3.003378 TCACTGTAGGCATCTTATCGTCG 59.997 47.826 0.00 0.00 0.00 5.12
620 621 4.036971 AGTCACTGTAGGCATCTTATCGTC 59.963 45.833 0.00 0.00 0.00 4.20
621 622 3.954904 AGTCACTGTAGGCATCTTATCGT 59.045 43.478 0.00 0.00 0.00 3.73
622 623 4.576216 AGTCACTGTAGGCATCTTATCG 57.424 45.455 0.00 0.00 0.00 2.92
623 624 4.979197 CGAAGTCACTGTAGGCATCTTATC 59.021 45.833 0.00 0.00 0.00 1.75
624 625 4.402793 ACGAAGTCACTGTAGGCATCTTAT 59.597 41.667 0.00 0.00 29.74 1.73
625 626 3.762288 ACGAAGTCACTGTAGGCATCTTA 59.238 43.478 0.00 0.00 29.74 2.10
626 627 2.563179 ACGAAGTCACTGTAGGCATCTT 59.437 45.455 0.00 0.00 29.74 2.40
627 628 2.094494 CACGAAGTCACTGTAGGCATCT 60.094 50.000 0.00 0.00 41.61 2.90
628 629 2.094700 TCACGAAGTCACTGTAGGCATC 60.095 50.000 0.00 0.00 41.61 3.91
629 630 1.893137 TCACGAAGTCACTGTAGGCAT 59.107 47.619 0.00 0.00 41.61 4.40
630 631 1.324383 TCACGAAGTCACTGTAGGCA 58.676 50.000 0.00 0.00 41.61 4.75
631 632 2.433868 TTCACGAAGTCACTGTAGGC 57.566 50.000 0.00 0.00 41.61 3.93
632 633 4.082733 TGAGATTCACGAAGTCACTGTAGG 60.083 45.833 0.00 0.00 41.61 3.18
633 634 5.048153 TGAGATTCACGAAGTCACTGTAG 57.952 43.478 0.00 0.00 41.61 2.74
634 635 5.240844 TCTTGAGATTCACGAAGTCACTGTA 59.759 40.000 0.00 0.00 41.61 2.74
635 636 4.038042 TCTTGAGATTCACGAAGTCACTGT 59.962 41.667 0.00 0.00 41.61 3.55
636 637 4.550422 TCTTGAGATTCACGAAGTCACTG 58.450 43.478 0.00 0.00 41.61 3.66
637 638 4.855715 TCTTGAGATTCACGAAGTCACT 57.144 40.909 0.00 0.00 41.61 3.41
638 639 5.164233 TCATCTTGAGATTCACGAAGTCAC 58.836 41.667 0.00 0.00 31.78 3.67
639 640 5.391312 TCATCTTGAGATTCACGAAGTCA 57.609 39.130 0.00 0.00 31.78 3.41
640 641 5.276773 GCATCATCTTGAGATTCACGAAGTC 60.277 44.000 0.00 0.00 31.78 3.01
641 642 4.569966 GCATCATCTTGAGATTCACGAAGT 59.430 41.667 0.00 0.00 34.16 3.01
642 643 4.809958 AGCATCATCTTGAGATTCACGAAG 59.190 41.667 0.00 0.00 28.30 3.79
643 644 4.763073 AGCATCATCTTGAGATTCACGAA 58.237 39.130 0.00 0.00 28.30 3.85
644 645 4.397481 AGCATCATCTTGAGATTCACGA 57.603 40.909 0.00 0.00 31.21 4.35
645 646 6.594284 TTTAGCATCATCTTGAGATTCACG 57.406 37.500 0.00 0.00 31.21 4.35
667 668 8.768501 AAACTATTTTCCTCCTCTGACTTTTT 57.231 30.769 0.00 0.00 0.00 1.94
668 669 8.633561 CAAAACTATTTTCCTCCTCTGACTTTT 58.366 33.333 0.00 0.00 0.00 2.27
669 670 7.998964 TCAAAACTATTTTCCTCCTCTGACTTT 59.001 33.333 0.00 0.00 0.00 2.66
670 671 7.445707 GTCAAAACTATTTTCCTCCTCTGACTT 59.554 37.037 0.00 0.00 0.00 3.01
671 672 6.937465 GTCAAAACTATTTTCCTCCTCTGACT 59.063 38.462 0.00 0.00 0.00 3.41
672 673 6.937465 AGTCAAAACTATTTTCCTCCTCTGAC 59.063 38.462 0.00 0.00 32.59 3.51
673 674 7.079451 AGTCAAAACTATTTTCCTCCTCTGA 57.921 36.000 0.00 0.00 32.59 3.27
674 675 7.751768 AAGTCAAAACTATTTTCCTCCTCTG 57.248 36.000 0.00 0.00 33.48 3.35
675 676 8.768501 AAAAGTCAAAACTATTTTCCTCCTCT 57.231 30.769 0.00 0.00 33.48 3.69
707 708 2.282603 TGCTGGGGCGGGTAAAAC 60.283 61.111 0.00 0.00 42.25 2.43
708 709 2.034999 CTGCTGGGGCGGGTAAAA 59.965 61.111 0.00 0.00 40.90 1.52
766 770 4.680237 TTGGCCGCCTGACTGTCG 62.680 66.667 11.61 0.00 0.00 4.35
767 771 2.743928 CTTGGCCGCCTGACTGTC 60.744 66.667 11.61 0.00 0.00 3.51
768 772 4.335647 CCTTGGCCGCCTGACTGT 62.336 66.667 11.61 0.00 0.00 3.55
769 773 4.335647 ACCTTGGCCGCCTGACTG 62.336 66.667 11.61 0.00 0.00 3.51
770 774 4.335647 CACCTTGGCCGCCTGACT 62.336 66.667 11.61 0.00 0.00 3.41
777 781 2.046892 CTGTCTCCACCTTGGCCG 60.047 66.667 0.00 0.00 37.47 6.13
778 782 1.003233 GTCTGTCTCCACCTTGGCC 60.003 63.158 0.00 0.00 37.47 5.36
839 853 0.178767 GGGCTGGAATGGGATTTTGC 59.821 55.000 0.00 0.00 0.00 3.68
841 855 0.326522 GGGGGCTGGAATGGGATTTT 60.327 55.000 0.00 0.00 0.00 1.82
876 891 0.322546 AGGTGAGCGGAATGGGAAAC 60.323 55.000 0.00 0.00 0.00 2.78
879 894 1.602237 GAAGGTGAGCGGAATGGGA 59.398 57.895 0.00 0.00 0.00 4.37
889 904 3.432890 GCTATGAGGGAAAGGAAGGTGAG 60.433 52.174 0.00 0.00 0.00 3.51
901 916 1.340399 CCACCAGCAGCTATGAGGGA 61.340 60.000 7.32 0.00 0.00 4.20
903 918 0.254178 AACCACCAGCAGCTATGAGG 59.746 55.000 7.32 6.71 0.00 3.86
932 947 0.532196 GAATCCGGAATGGGTCGTCC 60.532 60.000 9.01 0.00 38.76 4.79
938 953 1.456287 GAGGGGAATCCGGAATGGG 59.544 63.158 9.01 0.00 41.52 4.00
1145 1166 3.992641 GGGAGGGGTTGGGGTTGG 61.993 72.222 0.00 0.00 0.00 3.77
1146 1167 3.992641 GGGGAGGGGTTGGGGTTG 61.993 72.222 0.00 0.00 0.00 3.77
2164 2185 2.776913 CCTCGGCGTCCTTCTCCTC 61.777 68.421 6.85 0.00 0.00 3.71
2221 2242 2.932234 CGAGCCCGTCCTTGAGTGT 61.932 63.158 0.00 0.00 0.00 3.55
2341 2362 1.227645 ACGATGATCCATGCCGGTG 60.228 57.895 1.90 0.00 35.57 4.94
2427 2451 0.108567 TCGATTTCAACCGGCGATCA 60.109 50.000 9.30 0.00 0.00 2.92
2454 2478 7.212976 ACACATGTATAACTTATGCAGAGGAG 58.787 38.462 0.00 0.00 34.31 3.69
2484 2508 3.781307 ACGCCGGCCTCTATGCAA 61.781 61.111 23.46 0.00 0.00 4.08
2638 2669 3.342377 ACCAAACCAAACCAAACCAAG 57.658 42.857 0.00 0.00 0.00 3.61
2643 2674 3.790089 ACCAAACCAAACCAAACCAAA 57.210 38.095 0.00 0.00 0.00 3.28
2823 2862 4.022068 TCAAAGTTGCCCAAACATCTCATC 60.022 41.667 0.00 0.00 41.61 2.92
2842 2881 7.888021 ACTAGGATAACATGACCAACAATCAAA 59.112 33.333 0.00 0.00 0.00 2.69
3002 3049 5.109903 CAAGCCCTGAACATACAGTACTAC 58.890 45.833 0.00 0.00 36.30 2.73
3015 3062 0.759959 TCGTACCAACAAGCCCTGAA 59.240 50.000 0.00 0.00 0.00 3.02
3016 3063 0.034337 GTCGTACCAACAAGCCCTGA 59.966 55.000 0.00 0.00 0.00 3.86
3042 3206 4.152402 GGATCACATAAATTACGCGCATCT 59.848 41.667 5.73 0.00 0.00 2.90
3044 3208 3.812609 TGGATCACATAAATTACGCGCAT 59.187 39.130 5.73 0.00 0.00 4.73
3098 3264 2.380084 TCACGACCATTAACAGAGCC 57.620 50.000 0.00 0.00 0.00 4.70
3114 3280 3.367703 CCCAAACAGCTCATGGAAATCAC 60.368 47.826 9.93 0.00 36.27 3.06
3185 3351 2.679837 AGAACGTAGGAAATGCATGCTG 59.320 45.455 20.33 0.13 0.00 4.41
3200 3366 1.452145 AATGTGCGCCCAAAGAACGT 61.452 50.000 4.18 0.00 0.00 3.99
3201 3367 0.519519 TAATGTGCGCCCAAAGAACG 59.480 50.000 4.18 0.00 0.00 3.95
3202 3368 2.163412 TGATAATGTGCGCCCAAAGAAC 59.837 45.455 4.18 0.00 0.00 3.01
3203 3369 2.423185 CTGATAATGTGCGCCCAAAGAA 59.577 45.455 4.18 0.00 0.00 2.52
3204 3370 2.016318 CTGATAATGTGCGCCCAAAGA 58.984 47.619 4.18 0.00 0.00 2.52
3205 3371 1.745087 ACTGATAATGTGCGCCCAAAG 59.255 47.619 4.18 0.00 0.00 2.77
3206 3372 1.472082 CACTGATAATGTGCGCCCAAA 59.528 47.619 4.18 0.00 0.00 3.28
3207 3373 1.093972 CACTGATAATGTGCGCCCAA 58.906 50.000 4.18 0.00 0.00 4.12
3208 3374 0.747644 CCACTGATAATGTGCGCCCA 60.748 55.000 4.18 0.00 34.38 5.36
3209 3375 1.447317 CCCACTGATAATGTGCGCCC 61.447 60.000 4.18 0.00 34.38 6.13
3210 3376 1.447317 CCCCACTGATAATGTGCGCC 61.447 60.000 4.18 0.00 34.38 6.53
3211 3377 1.447317 CCCCCACTGATAATGTGCGC 61.447 60.000 0.00 0.00 34.38 6.09
3212 3378 0.107214 ACCCCCACTGATAATGTGCG 60.107 55.000 0.00 0.00 34.38 5.34
3213 3379 2.851195 CTACCCCCACTGATAATGTGC 58.149 52.381 0.00 0.00 34.38 4.57
3214 3380 2.172505 TGCTACCCCCACTGATAATGTG 59.827 50.000 0.00 0.00 35.39 3.21
3215 3381 2.487775 TGCTACCCCCACTGATAATGT 58.512 47.619 0.00 0.00 0.00 2.71
3216 3382 3.795688 ATGCTACCCCCACTGATAATG 57.204 47.619 0.00 0.00 0.00 1.90
3217 3383 3.463329 ACAATGCTACCCCCACTGATAAT 59.537 43.478 0.00 0.00 0.00 1.28
3218 3384 2.849943 ACAATGCTACCCCCACTGATAA 59.150 45.455 0.00 0.00 0.00 1.75
3219 3385 2.487775 ACAATGCTACCCCCACTGATA 58.512 47.619 0.00 0.00 0.00 2.15
3220 3386 1.298953 ACAATGCTACCCCCACTGAT 58.701 50.000 0.00 0.00 0.00 2.90
3221 3387 1.004277 GAACAATGCTACCCCCACTGA 59.996 52.381 0.00 0.00 0.00 3.41
3222 3388 1.004745 AGAACAATGCTACCCCCACTG 59.995 52.381 0.00 0.00 0.00 3.66
3223 3389 1.004745 CAGAACAATGCTACCCCCACT 59.995 52.381 0.00 0.00 0.00 4.00
3224 3390 1.271926 ACAGAACAATGCTACCCCCAC 60.272 52.381 0.00 0.00 0.00 4.61
3225 3391 1.072266 ACAGAACAATGCTACCCCCA 58.928 50.000 0.00 0.00 0.00 4.96
3226 3392 2.092323 GAACAGAACAATGCTACCCCC 58.908 52.381 0.00 0.00 0.00 5.40
3227 3393 3.010420 GAGAACAGAACAATGCTACCCC 58.990 50.000 0.00 0.00 0.00 4.95
3228 3394 3.686726 CAGAGAACAGAACAATGCTACCC 59.313 47.826 0.00 0.00 0.00 3.69
3229 3395 4.153117 CACAGAGAACAGAACAATGCTACC 59.847 45.833 0.00 0.00 0.00 3.18
3230 3396 4.752101 ACACAGAGAACAGAACAATGCTAC 59.248 41.667 0.00 0.00 0.00 3.58
3231 3397 4.751600 CACACAGAGAACAGAACAATGCTA 59.248 41.667 0.00 0.00 0.00 3.49
3232 3398 3.562973 CACACAGAGAACAGAACAATGCT 59.437 43.478 0.00 0.00 0.00 3.79
3246 3412 6.369059 ACAGATCAAAAACTTCACACAGAG 57.631 37.500 0.00 0.00 0.00 3.35
3290 3464 3.443045 CATGGTTGTCTGGGCGGC 61.443 66.667 0.00 0.00 0.00 6.53
3291 3465 3.443045 GCATGGTTGTCTGGGCGG 61.443 66.667 0.00 0.00 0.00 6.13
3292 3466 2.360350 AGCATGGTTGTCTGGGCG 60.360 61.111 0.00 0.00 0.00 6.13
3293 3467 1.604593 ACAGCATGGTTGTCTGGGC 60.605 57.895 0.00 0.00 43.62 5.36
3294 3468 1.870055 GCACAGCATGGTTGTCTGGG 61.870 60.000 0.00 0.00 43.62 4.45
3295 3469 0.892358 AGCACAGCATGGTTGTCTGG 60.892 55.000 0.00 0.00 43.62 3.86
3296 3470 2.637521 AGCACAGCATGGTTGTCTG 58.362 52.632 0.00 0.00 43.62 3.51
3304 3478 3.057386 TGTTTCATACCAAGCACAGCATG 60.057 43.478 0.00 0.00 46.00 4.06
3305 3479 3.156293 TGTTTCATACCAAGCACAGCAT 58.844 40.909 0.00 0.00 0.00 3.79
3306 3480 2.553602 CTGTTTCATACCAAGCACAGCA 59.446 45.455 0.00 0.00 0.00 4.41
3307 3481 2.554032 ACTGTTTCATACCAAGCACAGC 59.446 45.455 0.00 0.00 35.98 4.40
3308 3482 3.814842 TGACTGTTTCATACCAAGCACAG 59.185 43.478 0.00 0.00 38.09 3.66
3309 3483 3.814625 TGACTGTTTCATACCAAGCACA 58.185 40.909 0.00 0.00 0.00 4.57
3310 3484 4.216257 ACATGACTGTTTCATACCAAGCAC 59.784 41.667 0.00 0.00 43.68 4.40
3311 3485 4.216042 CACATGACTGTTTCATACCAAGCA 59.784 41.667 0.00 0.00 43.68 3.91
3312 3486 4.455533 TCACATGACTGTTTCATACCAAGC 59.544 41.667 0.00 0.00 43.68 4.01
3313 3487 6.558771 TTCACATGACTGTTTCATACCAAG 57.441 37.500 0.00 0.00 43.68 3.61
3314 3488 6.558771 CTTCACATGACTGTTTCATACCAA 57.441 37.500 0.00 0.00 43.68 3.67


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.