Multiple sequence alignment - TraesCS2B01G612100

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G612100 chr2B 100.000 4653 0 0 1 4653 791018526 791023178 0.000000e+00 8593.0
1 TraesCS2B01G612100 chr2B 99.335 451 3 0 1 451 113440127 113439677 0.000000e+00 817.0
2 TraesCS2B01G612100 chr2B 83.598 189 30 1 4301 4488 791024362 791024174 4.780000e-40 176.0
3 TraesCS2B01G612100 chr2A 96.625 3822 103 12 451 4248 769554633 769550814 0.000000e+00 6320.0
4 TraesCS2B01G612100 chr2D 97.414 3480 82 5 451 3922 644497471 644493992 0.000000e+00 5921.0
5 TraesCS2B01G612100 chr2D 97.076 171 5 0 4078 4248 644493995 644493825 5.890000e-74 289.0
6 TraesCS2B01G612100 chr2D 93.333 165 11 0 3917 4081 624881782 624881946 1.290000e-60 244.0
7 TraesCS2B01G612100 chr2D 97.222 36 1 0 4266 4301 644493394 644493359 1.400000e-05 62.1
8 TraesCS2B01G612100 chr5B 100.000 450 0 0 1 450 508060737 508061186 0.000000e+00 832.0
9 TraesCS2B01G612100 chr5B 99.111 450 4 0 1 450 635471217 635470768 0.000000e+00 809.0
10 TraesCS2B01G612100 chr6B 99.778 450 1 0 1 450 23057082 23056633 0.000000e+00 826.0
11 TraesCS2B01G612100 chr6B 93.168 161 11 0 3921 4081 450150743 450150583 2.160000e-58 237.0
12 TraesCS2B01G612100 chr6B 78.857 175 35 2 4299 4472 314564239 314564066 2.940000e-22 117.0
13 TraesCS2B01G612100 chr6B 78.409 176 33 5 4299 4472 314518691 314518519 4.920000e-20 110.0
14 TraesCS2B01G612100 chrUn 100.000 442 0 0 1 442 253261518 253261077 0.000000e+00 817.0
15 TraesCS2B01G612100 chr7B 99.335 451 3 0 1 451 60246577 60246127 0.000000e+00 817.0
16 TraesCS2B01G612100 chr7B 99.113 451 3 1 1 450 63101898 63101448 0.000000e+00 809.0
17 TraesCS2B01G612100 chr5A 99.335 451 2 1 1 450 562998165 562998615 0.000000e+00 815.0
18 TraesCS2B01G612100 chr6A 98.687 457 5 1 1 457 562293051 562293506 0.000000e+00 809.0
19 TraesCS2B01G612100 chr6A 79.167 168 35 0 4299 4466 352639341 352639174 2.940000e-22 117.0
20 TraesCS2B01G612100 chr1B 74.324 1406 323 30 1699 3091 677528276 677529656 3.140000e-156 562.0
21 TraesCS2B01G612100 chr1B 92.683 164 11 1 3920 4082 149249130 149248967 7.780000e-58 235.0
22 TraesCS2B01G612100 chr3D 93.452 168 11 0 3921 4088 418731485 418731652 2.780000e-62 250.0
23 TraesCS2B01G612100 chr7D 92.727 165 11 1 3921 4084 14440462 14440298 2.160000e-58 237.0
24 TraesCS2B01G612100 chr7D 90.608 181 13 4 3902 4081 488692580 488692757 2.160000e-58 237.0
25 TraesCS2B01G612100 chr3B 91.379 174 13 2 3909 4081 23408581 23408409 2.160000e-58 237.0
26 TraesCS2B01G612100 chr1D 92.727 165 11 1 3921 4084 415400243 415400079 2.160000e-58 237.0
27 TraesCS2B01G612100 chr6D 81.143 175 31 2 4299 4472 229414059 229413886 6.280000e-29 139.0
28 TraesCS2B01G612100 chr6D 100.000 30 0 0 3062 3091 157440231 157440202 6.500000e-04 56.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G612100 chr2B 791018526 791023178 4652 False 8593.0 8593 100.000000 1 4653 1 chr2B.!!$F1 4652
1 TraesCS2B01G612100 chr2A 769550814 769554633 3819 True 6320.0 6320 96.625000 451 4248 1 chr2A.!!$R1 3797
2 TraesCS2B01G612100 chr2D 644493359 644497471 4112 True 2090.7 5921 97.237333 451 4301 3 chr2D.!!$R1 3850
3 TraesCS2B01G612100 chr1B 677528276 677529656 1380 False 562.0 562 74.324000 1699 3091 1 chr1B.!!$F1 1392

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
393 394 0.036858 GGCATATCTCCGGAGAAGCC 60.037 60.000 38.05 38.05 41.36 4.35 F
447 448 0.106149 GTATGGCCCTGTTCCGGTAG 59.894 60.000 0.00 0.00 0.00 3.18 F
448 449 0.325860 TATGGCCCTGTTCCGGTAGT 60.326 55.000 0.00 0.00 0.00 2.73 F
792 800 1.009389 CCGTCTCGGCAGACTTCAAC 61.009 60.000 12.88 0.00 46.31 3.18 F
1506 1516 1.002544 GGTGTCCTTCCTTCCTCAGTG 59.997 57.143 0.00 0.00 0.00 3.66 F
2256 2266 2.261037 TTGCAAATTCTTCGGCGATG 57.739 45.000 11.76 14.16 0.00 3.84 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1389 1399 0.178964 TGGGTTCTTTGGCCTCAAGG 60.179 55.000 3.32 0.0 33.98 3.61 R
1395 1405 0.822121 AGTCGTTGGGTTCTTTGGCC 60.822 55.000 0.00 0.0 0.00 5.36 R
1476 1486 1.412505 GGAAGGACACCCCCAAACTTT 60.413 52.381 0.00 0.0 34.66 2.66 R
2461 2471 1.142688 ATTGGGAGGCCTTGTCTGGT 61.143 55.000 6.77 0.0 0.00 4.00 R
3172 3182 2.808244 ACACCACAACTTTTGATTGCG 58.192 42.857 0.00 0.0 0.00 4.85 R
3887 3903 2.815503 CACCAGCAAGTCATCATGAACA 59.184 45.455 0.00 0.0 0.00 3.18 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
57 58 4.683432 GGCATAGATCCGACCAGC 57.317 61.111 0.00 0.00 0.00 4.85
58 59 1.373497 GGCATAGATCCGACCAGCG 60.373 63.158 0.00 0.00 40.47 5.18
59 60 1.364171 GCATAGATCCGACCAGCGT 59.636 57.895 0.00 0.00 38.67 5.07
60 61 0.941463 GCATAGATCCGACCAGCGTG 60.941 60.000 0.00 0.00 38.67 5.34
61 62 0.941463 CATAGATCCGACCAGCGTGC 60.941 60.000 0.00 0.00 38.67 5.34
62 63 2.088674 ATAGATCCGACCAGCGTGCC 62.089 60.000 0.00 0.00 38.67 5.01
74 75 4.794439 CGTGCCGCGGATCACTGA 62.794 66.667 33.48 0.00 36.85 3.41
75 76 3.188786 GTGCCGCGGATCACTGAC 61.189 66.667 33.48 9.04 0.00 3.51
76 77 4.794439 TGCCGCGGATCACTGACG 62.794 66.667 33.48 0.00 0.00 4.35
77 78 4.796231 GCCGCGGATCACTGACGT 62.796 66.667 33.48 0.00 0.00 4.34
78 79 2.880879 CCGCGGATCACTGACGTG 60.881 66.667 24.07 0.00 42.59 4.49
79 80 2.880879 CGCGGATCACTGACGTGG 60.881 66.667 0.00 0.00 41.53 4.94
80 81 3.188786 GCGGATCACTGACGTGGC 61.189 66.667 0.00 0.00 41.53 5.01
81 82 2.261361 CGGATCACTGACGTGGCA 59.739 61.111 0.00 0.00 41.53 4.92
82 83 1.807165 CGGATCACTGACGTGGCAG 60.807 63.158 0.00 0.00 41.53 4.85
83 84 1.591703 GGATCACTGACGTGGCAGA 59.408 57.895 10.26 0.00 41.53 4.26
84 85 0.176680 GGATCACTGACGTGGCAGAT 59.823 55.000 10.26 0.97 41.53 2.90
85 86 1.409064 GGATCACTGACGTGGCAGATA 59.591 52.381 10.26 0.00 41.53 1.98
86 87 2.036475 GGATCACTGACGTGGCAGATAT 59.964 50.000 10.26 2.01 41.53 1.63
87 88 2.584492 TCACTGACGTGGCAGATATG 57.416 50.000 10.26 0.00 41.53 1.78
88 89 0.933097 CACTGACGTGGCAGATATGC 59.067 55.000 10.26 3.01 39.20 3.14
120 121 4.076244 GGCATAGCCTCTGCATGG 57.924 61.111 4.37 1.87 46.69 3.66
121 122 1.150081 GGCATAGCCTCTGCATGGT 59.850 57.895 4.37 0.00 46.69 3.55
122 123 1.170919 GGCATAGCCTCTGCATGGTG 61.171 60.000 4.37 0.63 46.69 4.17
123 124 1.793134 GCATAGCCTCTGCATGGTGC 61.793 60.000 0.00 6.12 45.29 5.01
133 134 2.903855 CATGGTGCGGCCTGGATC 60.904 66.667 0.00 0.00 38.35 3.36
134 135 3.410628 ATGGTGCGGCCTGGATCA 61.411 61.111 0.00 2.40 38.35 2.92
135 136 2.982643 ATGGTGCGGCCTGGATCAA 61.983 57.895 0.00 0.00 30.44 2.57
136 137 2.124151 GGTGCGGCCTGGATCAAT 60.124 61.111 0.00 0.00 0.00 2.57
137 138 2.484062 GGTGCGGCCTGGATCAATG 61.484 63.158 0.00 0.00 0.00 2.82
138 139 1.451927 GTGCGGCCTGGATCAATGA 60.452 57.895 0.00 0.00 0.00 2.57
139 140 1.451927 TGCGGCCTGGATCAATGAC 60.452 57.895 0.00 0.00 0.00 3.06
140 141 2.537560 GCGGCCTGGATCAATGACG 61.538 63.158 0.00 0.00 0.00 4.35
141 142 1.153369 CGGCCTGGATCAATGACGT 60.153 57.895 0.00 0.00 0.00 4.34
142 143 1.431488 CGGCCTGGATCAATGACGTG 61.431 60.000 0.00 0.00 0.00 4.49
143 144 1.097547 GGCCTGGATCAATGACGTGG 61.098 60.000 0.00 0.00 0.00 4.94
144 145 1.718757 GCCTGGATCAATGACGTGGC 61.719 60.000 0.00 0.00 0.00 5.01
145 146 1.097547 CCTGGATCAATGACGTGGCC 61.098 60.000 0.00 0.00 0.00 5.36
146 147 0.107508 CTGGATCAATGACGTGGCCT 60.108 55.000 3.32 0.00 0.00 5.19
147 148 0.392863 TGGATCAATGACGTGGCCTG 60.393 55.000 3.32 0.00 0.00 4.85
148 149 1.718757 GGATCAATGACGTGGCCTGC 61.719 60.000 3.32 0.00 0.00 4.85
149 150 2.040213 GATCAATGACGTGGCCTGCG 62.040 60.000 16.56 16.56 0.00 5.18
150 151 3.803082 CAATGACGTGGCCTGCGG 61.803 66.667 20.78 3.71 0.00 5.69
151 152 4.015406 AATGACGTGGCCTGCGGA 62.015 61.111 20.78 9.96 0.00 5.54
152 153 4.760047 ATGACGTGGCCTGCGGAC 62.760 66.667 20.78 15.18 0.00 4.79
156 157 3.849951 CGTGGCCTGCGGACCTAT 61.850 66.667 3.32 0.00 0.00 2.57
157 158 2.203070 GTGGCCTGCGGACCTATG 60.203 66.667 3.32 0.00 0.00 2.23
158 159 4.175337 TGGCCTGCGGACCTATGC 62.175 66.667 3.32 0.00 0.00 3.14
159 160 4.937431 GGCCTGCGGACCTATGCC 62.937 72.222 0.00 0.00 0.00 4.40
195 196 3.120105 CCGTCGGCATAGCTCTGA 58.880 61.111 2.78 0.00 0.00 3.27
196 197 1.299468 CCGTCGGCATAGCTCTGAC 60.299 63.158 2.78 0.00 0.00 3.51
199 200 2.659897 CGGCATAGCTCTGACGCC 60.660 66.667 14.90 7.96 41.40 5.68
200 201 2.659897 GGCATAGCTCTGACGCCG 60.660 66.667 2.78 0.00 32.14 6.46
201 202 2.105128 GCATAGCTCTGACGCCGT 59.895 61.111 2.78 0.00 0.00 5.68
202 203 1.519455 GCATAGCTCTGACGCCGTT 60.519 57.895 2.78 0.00 0.00 4.44
203 204 1.084370 GCATAGCTCTGACGCCGTTT 61.084 55.000 2.78 0.00 0.00 3.60
204 205 0.647410 CATAGCTCTGACGCCGTTTG 59.353 55.000 0.00 0.00 0.00 2.93
205 206 1.084370 ATAGCTCTGACGCCGTTTGC 61.084 55.000 0.00 0.00 0.00 3.68
206 207 4.090057 GCTCTGACGCCGTTTGCC 62.090 66.667 0.00 0.00 36.24 4.52
207 208 2.664851 CTCTGACGCCGTTTGCCA 60.665 61.111 0.00 0.00 36.24 4.92
208 209 2.664851 TCTGACGCCGTTTGCCAG 60.665 61.111 0.00 0.00 36.24 4.85
209 210 3.726517 CTGACGCCGTTTGCCAGG 61.727 66.667 0.00 0.00 36.24 4.45
233 234 4.849310 CCGGGCCCCACGTGTATG 62.849 72.222 18.66 3.27 0.00 2.39
237 238 4.460683 GCCCCACGTGTATGCCGA 62.461 66.667 15.65 0.00 0.00 5.54
238 239 2.510691 CCCCACGTGTATGCCGAC 60.511 66.667 15.65 0.00 0.00 4.79
239 240 2.883730 CCCACGTGTATGCCGACG 60.884 66.667 15.65 0.00 41.41 5.12
240 241 2.883730 CCACGTGTATGCCGACGG 60.884 66.667 15.65 10.29 39.94 4.79
258 259 2.570181 CCTTCGTAAGCCGACGGT 59.430 61.111 16.73 0.00 46.77 4.83
259 260 1.802636 CCTTCGTAAGCCGACGGTA 59.197 57.895 16.73 0.00 46.77 4.02
260 261 0.248377 CCTTCGTAAGCCGACGGTAG 60.248 60.000 16.73 2.98 46.77 3.18
261 262 2.793946 TCGTAAGCCGACGGTAGC 59.206 61.111 16.73 0.46 41.60 3.58
262 263 1.746615 TCGTAAGCCGACGGTAGCT 60.747 57.895 16.73 3.22 41.60 3.32
263 264 1.585521 CGTAAGCCGACGGTAGCTG 60.586 63.158 16.73 0.00 39.87 4.24
264 265 1.509923 GTAAGCCGACGGTAGCTGT 59.490 57.895 16.73 0.98 39.87 4.40
265 266 0.525029 GTAAGCCGACGGTAGCTGTC 60.525 60.000 16.73 0.00 39.87 3.51
279 280 1.337821 GCTGTCGGCGTATATGTAGC 58.662 55.000 6.85 4.08 0.00 3.58
280 281 1.068472 GCTGTCGGCGTATATGTAGCT 60.068 52.381 6.85 0.00 0.00 3.32
281 282 2.161012 GCTGTCGGCGTATATGTAGCTA 59.839 50.000 6.85 0.00 0.00 3.32
282 283 3.728268 GCTGTCGGCGTATATGTAGCTAG 60.728 52.174 6.85 0.00 0.00 3.42
283 284 2.745821 TGTCGGCGTATATGTAGCTAGG 59.254 50.000 6.85 0.00 0.00 3.02
284 285 1.741706 TCGGCGTATATGTAGCTAGGC 59.258 52.381 6.85 0.00 0.00 3.93
285 286 1.202268 CGGCGTATATGTAGCTAGGCC 60.202 57.143 0.00 0.00 42.62 5.19
286 287 1.202268 GGCGTATATGTAGCTAGGCCG 60.202 57.143 0.00 0.00 38.63 6.13
287 288 1.741706 GCGTATATGTAGCTAGGCCGA 59.258 52.381 0.00 0.00 0.00 5.54
288 289 2.477525 GCGTATATGTAGCTAGGCCGAC 60.478 54.545 0.00 0.00 0.00 4.79
289 290 2.222976 CGTATATGTAGCTAGGCCGACG 60.223 54.545 0.00 0.00 0.00 5.12
290 291 1.174783 ATATGTAGCTAGGCCGACGG 58.825 55.000 10.29 10.29 0.00 4.79
300 301 2.960129 GCCGACGGCCGTTCTATG 60.960 66.667 34.65 19.22 44.06 2.23
301 302 2.960129 CCGACGGCCGTTCTATGC 60.960 66.667 34.65 17.58 36.31 3.14
302 303 2.960129 CGACGGCCGTTCTATGCC 60.960 66.667 34.65 16.77 44.41 4.40
306 307 2.960129 GGCCGTTCTATGCCGACG 60.960 66.667 0.00 0.00 38.00 5.12
309 310 2.493030 CGTTCTATGCCGACGGGT 59.507 61.111 17.22 0.00 34.97 5.28
310 311 1.876714 CGTTCTATGCCGACGGGTG 60.877 63.158 17.22 0.00 34.97 4.61
311 312 2.171725 GTTCTATGCCGACGGGTGC 61.172 63.158 17.22 1.31 34.97 5.01
312 313 3.379865 TTCTATGCCGACGGGTGCC 62.380 63.158 17.22 0.00 34.97 5.01
327 328 4.327885 GCCGTCGGCTTATCTCTG 57.672 61.111 28.98 0.00 46.69 3.35
328 329 1.951631 GCCGTCGGCTTATCTCTGC 60.952 63.158 28.98 0.00 46.69 4.26
329 330 1.658717 CCGTCGGCTTATCTCTGCG 60.659 63.158 0.00 0.00 0.00 5.18
330 331 1.064296 CGTCGGCTTATCTCTGCGT 59.936 57.895 0.00 0.00 0.00 5.24
331 332 0.306840 CGTCGGCTTATCTCTGCGTA 59.693 55.000 0.00 0.00 0.00 4.42
332 333 1.660614 CGTCGGCTTATCTCTGCGTAG 60.661 57.143 0.00 0.00 0.00 3.51
350 351 2.812178 CCCGACGGCCTTTGTACG 60.812 66.667 8.86 0.00 0.00 3.67
351 352 3.484547 CCGACGGCCTTTGTACGC 61.485 66.667 0.00 0.00 0.00 4.42
352 353 3.484547 CGACGGCCTTTGTACGCC 61.485 66.667 0.00 0.00 42.05 5.68
357 358 3.484547 GCCTTTGTACGCCGACGG 61.485 66.667 10.29 10.29 46.04 4.79
358 359 3.484547 CCTTTGTACGCCGACGGC 61.485 66.667 29.10 29.10 46.75 5.68
368 369 4.760047 CCGACGGCCAGAACCAGG 62.760 72.222 2.24 0.00 0.00 4.45
375 376 2.046892 CCAGAACCAGGCTGTCGG 60.047 66.667 14.43 6.04 0.00 4.79
376 377 2.743928 CAGAACCAGGCTGTCGGC 60.744 66.667 14.43 0.00 40.90 5.54
377 378 3.241530 AGAACCAGGCTGTCGGCA 61.242 61.111 14.43 0.00 44.01 5.69
378 379 2.045926 GAACCAGGCTGTCGGCAT 60.046 61.111 14.43 0.00 44.01 4.40
379 380 1.220749 GAACCAGGCTGTCGGCATA 59.779 57.895 14.43 0.00 44.01 3.14
380 381 0.179045 GAACCAGGCTGTCGGCATAT 60.179 55.000 14.43 0.00 44.01 1.78
381 382 0.179045 AACCAGGCTGTCGGCATATC 60.179 55.000 14.43 0.00 44.01 1.63
382 383 1.050988 ACCAGGCTGTCGGCATATCT 61.051 55.000 14.43 0.00 44.01 1.98
383 384 0.320247 CCAGGCTGTCGGCATATCTC 60.320 60.000 14.43 0.00 44.01 2.75
384 385 0.320247 CAGGCTGTCGGCATATCTCC 60.320 60.000 6.28 0.00 44.01 3.71
386 387 1.373497 GCTGTCGGCATATCTCCGG 60.373 63.158 11.70 0.00 46.43 5.14
387 388 1.806461 GCTGTCGGCATATCTCCGGA 61.806 60.000 2.93 2.93 46.43 5.14
388 389 0.242286 CTGTCGGCATATCTCCGGAG 59.758 60.000 26.32 26.32 46.43 4.63
389 390 0.179001 TGTCGGCATATCTCCGGAGA 60.179 55.000 35.29 35.29 46.43 3.71
390 391 0.959553 GTCGGCATATCTCCGGAGAA 59.040 55.000 36.58 24.83 46.43 2.87
391 392 1.068194 GTCGGCATATCTCCGGAGAAG 60.068 57.143 36.58 27.71 46.43 2.85
392 393 0.389166 CGGCATATCTCCGGAGAAGC 60.389 60.000 36.58 34.01 42.99 3.86
393 394 0.036858 GGCATATCTCCGGAGAAGCC 60.037 60.000 38.05 38.05 41.36 4.35
419 420 3.177600 CCGTCGGCATTGTTCTGG 58.822 61.111 0.00 0.00 0.00 3.86
420 421 2.480555 CGTCGGCATTGTTCTGGC 59.519 61.111 0.00 0.00 38.28 4.85
421 422 2.877691 GTCGGCATTGTTCTGGCC 59.122 61.111 0.00 0.00 44.27 5.36
424 425 2.877691 GGCATTGTTCTGGCCGTC 59.122 61.111 0.00 0.00 38.04 4.79
425 426 2.480555 GCATTGTTCTGGCCGTCG 59.519 61.111 0.00 0.00 0.00 5.12
426 427 3.039202 GCATTGTTCTGGCCGTCGG 62.039 63.158 6.99 6.99 0.00 4.79
427 428 2.046314 ATTGTTCTGGCCGTCGGG 60.046 61.111 14.38 0.00 0.00 5.14
428 429 3.622060 ATTGTTCTGGCCGTCGGGG 62.622 63.158 14.38 0.00 39.58 5.73
430 431 3.384532 GTTCTGGCCGTCGGGGTA 61.385 66.667 14.38 0.00 38.44 3.69
431 432 2.364579 TTCTGGCCGTCGGGGTAT 60.365 61.111 14.38 0.00 38.44 2.73
432 433 2.727392 TTCTGGCCGTCGGGGTATG 61.727 63.158 14.38 0.00 38.44 2.39
433 434 4.235762 CTGGCCGTCGGGGTATGG 62.236 72.222 14.38 0.00 38.44 2.74
444 445 2.192175 GGTATGGCCCTGTTCCGG 59.808 66.667 0.00 0.00 0.00 5.14
445 446 2.676265 GGTATGGCCCTGTTCCGGT 61.676 63.158 0.00 0.00 0.00 5.28
446 447 1.339644 GGTATGGCCCTGTTCCGGTA 61.340 60.000 0.00 0.00 0.00 4.02
447 448 0.106149 GTATGGCCCTGTTCCGGTAG 59.894 60.000 0.00 0.00 0.00 3.18
448 449 0.325860 TATGGCCCTGTTCCGGTAGT 60.326 55.000 0.00 0.00 0.00 2.73
449 450 1.910580 ATGGCCCTGTTCCGGTAGTG 61.911 60.000 0.00 0.00 0.00 2.74
732 733 1.458398 TCTCAGAGAGCTTGACCTCG 58.542 55.000 0.00 0.00 36.95 4.63
792 800 1.009389 CCGTCTCGGCAGACTTCAAC 61.009 60.000 12.88 0.00 46.31 3.18
853 862 3.228188 ACTGAGATTGGTGCCTTGAAA 57.772 42.857 0.00 0.00 0.00 2.69
954 963 9.226345 GCTCGAATTCTTGTTTTTATCCAATAG 57.774 33.333 3.52 0.00 0.00 1.73
976 985 6.665992 AGTAGATTATTTGGCGAGATACCA 57.334 37.500 0.00 0.00 34.65 3.25
982 991 3.836365 TTTGGCGAGATACCATCATCA 57.164 42.857 0.00 0.00 36.96 3.07
1003 1013 4.232122 TCACTAGGAACCTCTCCCTTATGA 59.768 45.833 0.00 0.00 46.81 2.15
1053 1063 2.815158 GGACCTATCCCTCCATCTCTC 58.185 57.143 0.00 0.00 39.39 3.20
1152 1162 3.454082 ACATTTCCTCTCTGATGGGTCTC 59.546 47.826 0.00 0.00 0.00 3.36
1219 1229 4.744795 TTCAGCTCACTTTCCTATCTCC 57.255 45.455 0.00 0.00 0.00 3.71
1254 1264 6.263842 TGATGGACAATAATCTCTTTCATGGC 59.736 38.462 0.00 0.00 0.00 4.40
1257 1267 3.316308 ACAATAATCTCTTTCATGGCCGC 59.684 43.478 0.00 0.00 0.00 6.53
1275 1285 1.330655 GCCTACCAGCCTCAGTAGCA 61.331 60.000 0.00 0.00 35.63 3.49
1311 1321 3.737172 CGGCTTCAGTTTGGCCCG 61.737 66.667 0.00 0.00 42.58 6.13
1500 1510 1.432023 TTGGGGGTGTCCTTCCTTCC 61.432 60.000 0.00 0.00 35.33 3.46
1506 1516 1.002544 GGTGTCCTTCCTTCCTCAGTG 59.997 57.143 0.00 0.00 0.00 3.66
1611 1621 7.342769 TCTCGCCAACTTAGAATATCTTGTA 57.657 36.000 0.00 0.00 0.00 2.41
1612 1622 7.952671 TCTCGCCAACTTAGAATATCTTGTAT 58.047 34.615 0.00 0.00 0.00 2.29
1794 1804 2.654863 AGTGGCAATATACCAAGCACC 58.345 47.619 0.00 0.00 39.39 5.01
1947 1957 6.389869 AGGGATCAATACCACAAGAAATAGGA 59.610 38.462 0.00 0.00 31.13 2.94
2133 2143 5.659048 ATCTCGACTTCTCAAACAACAAC 57.341 39.130 0.00 0.00 0.00 3.32
2256 2266 2.261037 TTGCAAATTCTTCGGCGATG 57.739 45.000 11.76 14.16 0.00 3.84
2274 2284 4.922692 GCGATGTCAATTGAAAACAATGGA 59.077 37.500 10.35 0.00 0.00 3.41
2461 2471 6.783708 AACAAAAGATACCTTCCACAACAA 57.216 33.333 0.00 0.00 0.00 2.83
2616 2626 4.632538 AAGTACAAACCTTGTTGCAGTC 57.367 40.909 0.00 0.00 42.22 3.51
3081 3091 5.885912 TCTTAGAGGAACAATTGGTTATGCC 59.114 40.000 10.83 0.12 40.63 4.40
3398 3409 4.517285 TGATAGCAGATTTGGACAAGGAC 58.483 43.478 0.00 0.00 0.00 3.85
3657 3671 5.499139 TCTTTGTCAACACAATGAAGACC 57.501 39.130 1.99 0.00 42.28 3.85
3663 3677 4.024048 GTCAACACAATGAAGACCGTGAAT 60.024 41.667 0.00 0.00 33.56 2.57
3739 3755 8.400184 TCATGGATATCATTAAGCTCCTTTTG 57.600 34.615 4.83 0.00 32.92 2.44
3872 3888 8.540492 GTGTAATTAGAATCATAACAGTGACCG 58.460 37.037 0.00 0.00 0.00 4.79
3886 3902 0.539986 TGACCGGTTCATAAGCCTCC 59.460 55.000 9.42 0.00 0.00 4.30
3887 3903 0.831307 GACCGGTTCATAAGCCTCCT 59.169 55.000 9.42 0.00 0.00 3.69
3924 3940 4.342951 TGCTGGTGTTGTAGTGTAGTACTT 59.657 41.667 0.00 0.00 40.89 2.24
3934 3950 4.031636 AGTGTAGTACTTCCTCCGTTCT 57.968 45.455 0.00 0.00 35.67 3.01
3940 3956 7.275123 GTGTAGTACTTCCTCCGTTCTTAAATG 59.725 40.741 0.00 0.00 0.00 2.32
3942 3958 7.472334 AGTACTTCCTCCGTTCTTAAATGTA 57.528 36.000 0.00 0.00 0.00 2.29
3950 3966 7.881232 TCCTCCGTTCTTAAATGTATGTCTTTT 59.119 33.333 0.00 0.00 0.00 2.27
3951 3967 9.158233 CCTCCGTTCTTAAATGTATGTCTTTTA 57.842 33.333 0.00 0.00 0.00 1.52
3965 3981 8.721478 TGTATGTCTTTTAAGAGATTTCACTGC 58.279 33.333 7.35 0.00 39.46 4.40
3967 3983 7.566760 TGTCTTTTAAGAGATTTCACTGCAA 57.433 32.000 0.00 0.00 35.32 4.08
3976 3993 7.602517 AGAGATTTCACTGCAAACTACATAC 57.397 36.000 0.00 0.00 0.00 2.39
3985 4002 6.921307 CACTGCAAACTACATACGGATGTATA 59.079 38.462 20.64 1.71 45.42 1.47
4033 4051 5.351465 CACTCATTTTGCTCCGTATGTAGTT 59.649 40.000 0.00 0.00 0.00 2.24
4034 4052 5.581085 ACTCATTTTGCTCCGTATGTAGTTC 59.419 40.000 0.00 0.00 0.00 3.01
4035 4053 5.483811 TCATTTTGCTCCGTATGTAGTTCA 58.516 37.500 0.00 0.00 0.00 3.18
4037 4055 7.269316 TCATTTTGCTCCGTATGTAGTTCATA 58.731 34.615 0.00 0.00 37.91 2.15
4040 4058 5.183014 TGCTCCGTATGTAGTTCATAGTG 57.817 43.478 0.00 0.00 39.36 2.74
4044 4062 6.516860 GCTCCGTATGTAGTTCATAGTGGAAT 60.517 42.308 10.20 0.00 40.80 3.01
4045 4063 6.978338 TCCGTATGTAGTTCATAGTGGAATC 58.022 40.000 7.73 0.00 39.60 2.52
4046 4064 6.776116 TCCGTATGTAGTTCATAGTGGAATCT 59.224 38.462 7.73 0.00 39.60 2.40
4048 4066 7.040340 CCGTATGTAGTTCATAGTGGAATCTCT 60.040 40.741 3.20 0.00 39.36 3.10
4049 4067 9.000486 CGTATGTAGTTCATAGTGGAATCTCTA 58.000 37.037 0.00 0.00 39.36 2.43
4054 4072 9.959749 GTAGTTCATAGTGGAATCTCTAAAGAG 57.040 37.037 0.25 0.25 43.36 2.85
4076 4095 7.239438 AGAGACATATATTTAGGAACGGAGGA 58.761 38.462 0.00 0.00 0.00 3.71
4096 4115 4.223255 AGGAAGTAGAAGTTTAGTCCCTGC 59.777 45.833 0.00 0.00 0.00 4.85
4156 4181 0.810648 TTGTCAGCGATGGGAAATGC 59.189 50.000 0.00 0.00 0.00 3.56
4198 4223 8.898761 TCAAGAGCTGAGTTAAACATGTTTTAA 58.101 29.630 27.66 16.44 34.23 1.52
4254 4321 2.026542 GGGAGTCCAACCGATTAAAGGT 60.027 50.000 12.30 0.61 45.29 3.50
4272 4710 8.561738 TTAAAGGTCTGAATGTCCATTAACTC 57.438 34.615 0.00 0.00 27.93 3.01
4301 4739 8.667076 TGGTGTAATGATCTCATGATGTAAAG 57.333 34.615 0.00 0.00 36.56 1.85
4302 4740 8.485392 TGGTGTAATGATCTCATGATGTAAAGA 58.515 33.333 0.00 0.00 36.56 2.52
4303 4741 8.986847 GGTGTAATGATCTCATGATGTAAAGAG 58.013 37.037 0.00 0.00 36.56 2.85
4304 4742 9.755804 GTGTAATGATCTCATGATGTAAAGAGA 57.244 33.333 0.00 0.00 40.96 3.10
4309 4747 9.902684 ATGATCTCATGATGTAAAGAGAAAAGT 57.097 29.630 0.00 0.00 40.19 2.66
4310 4748 9.376075 TGATCTCATGATGTAAAGAGAAAAGTC 57.624 33.333 0.00 0.00 40.19 3.01
4311 4749 8.729805 ATCTCATGATGTAAAGAGAAAAGTCC 57.270 34.615 0.00 0.00 40.19 3.85
4312 4750 7.679783 TCTCATGATGTAAAGAGAAAAGTCCA 58.320 34.615 0.00 0.00 34.45 4.02
4313 4751 8.324306 TCTCATGATGTAAAGAGAAAAGTCCAT 58.676 33.333 0.00 0.00 34.45 3.41
4314 4752 8.272545 TCATGATGTAAAGAGAAAAGTCCATG 57.727 34.615 0.00 0.00 0.00 3.66
4315 4753 7.884877 TCATGATGTAAAGAGAAAAGTCCATGT 59.115 33.333 0.00 0.00 0.00 3.21
4316 4754 8.517878 CATGATGTAAAGAGAAAAGTCCATGTT 58.482 33.333 0.00 0.00 0.00 2.71
4317 4755 9.739276 ATGATGTAAAGAGAAAAGTCCATGTTA 57.261 29.630 0.00 0.00 0.00 2.41
4318 4756 8.999431 TGATGTAAAGAGAAAAGTCCATGTTAC 58.001 33.333 0.00 0.00 0.00 2.50
4319 4757 8.918202 ATGTAAAGAGAAAAGTCCATGTTACA 57.082 30.769 0.00 0.00 34.50 2.41
4320 4758 8.740123 TGTAAAGAGAAAAGTCCATGTTACAA 57.260 30.769 0.00 0.00 0.00 2.41
4321 4759 9.349713 TGTAAAGAGAAAAGTCCATGTTACAAT 57.650 29.630 0.00 0.00 0.00 2.71
4322 4760 9.827411 GTAAAGAGAAAAGTCCATGTTACAATC 57.173 33.333 0.00 0.00 0.00 2.67
4323 4761 7.454260 AAGAGAAAAGTCCATGTTACAATCC 57.546 36.000 0.00 0.00 0.00 3.01
4324 4762 6.784031 AGAGAAAAGTCCATGTTACAATCCT 58.216 36.000 0.00 0.00 0.00 3.24
4325 4763 7.918076 AGAGAAAAGTCCATGTTACAATCCTA 58.082 34.615 0.00 0.00 0.00 2.94
4326 4764 8.383175 AGAGAAAAGTCCATGTTACAATCCTAA 58.617 33.333 0.00 0.00 0.00 2.69
4327 4765 8.934023 AGAAAAGTCCATGTTACAATCCTAAA 57.066 30.769 0.00 0.00 0.00 1.85
4328 4766 8.793592 AGAAAAGTCCATGTTACAATCCTAAAC 58.206 33.333 0.00 0.00 0.00 2.01
4329 4767 8.706322 AAAAGTCCATGTTACAATCCTAAACT 57.294 30.769 0.00 0.00 0.00 2.66
4330 4768 9.802039 AAAAGTCCATGTTACAATCCTAAACTA 57.198 29.630 0.00 0.00 0.00 2.24
4331 4769 9.802039 AAAGTCCATGTTACAATCCTAAACTAA 57.198 29.630 0.00 0.00 0.00 2.24
4332 4770 8.788325 AGTCCATGTTACAATCCTAAACTAAC 57.212 34.615 0.00 0.00 0.00 2.34
4333 4771 7.827729 AGTCCATGTTACAATCCTAAACTAACC 59.172 37.037 0.00 0.00 0.00 2.85
4334 4772 7.608761 GTCCATGTTACAATCCTAAACTAACCA 59.391 37.037 0.00 0.00 0.00 3.67
4335 4773 7.608761 TCCATGTTACAATCCTAAACTAACCAC 59.391 37.037 0.00 0.00 0.00 4.16
4336 4774 7.413657 CCATGTTACAATCCTAAACTAACCACG 60.414 40.741 0.00 0.00 0.00 4.94
4337 4775 6.523840 TGTTACAATCCTAAACTAACCACGT 58.476 36.000 0.00 0.00 0.00 4.49
4338 4776 6.424509 TGTTACAATCCTAAACTAACCACGTG 59.575 38.462 9.08 9.08 0.00 4.49
4339 4777 4.320870 ACAATCCTAAACTAACCACGTGG 58.679 43.478 32.83 32.83 42.17 4.94
4353 4791 4.091453 CCACGTGGTTTGATATTCAACC 57.909 45.455 26.95 9.20 35.89 3.77
4354 4792 3.119637 CCACGTGGTTTGATATTCAACCC 60.120 47.826 26.95 0.00 39.14 4.11
4355 4793 3.086282 ACGTGGTTTGATATTCAACCCC 58.914 45.455 12.32 3.08 38.06 4.95
4356 4794 2.096819 CGTGGTTTGATATTCAACCCCG 59.903 50.000 12.32 9.79 38.06 5.73
4357 4795 3.349022 GTGGTTTGATATTCAACCCCGA 58.651 45.455 12.32 0.00 38.06 5.14
4358 4796 3.759618 GTGGTTTGATATTCAACCCCGAA 59.240 43.478 12.32 0.00 38.06 4.30
4359 4797 4.401202 GTGGTTTGATATTCAACCCCGAAT 59.599 41.667 12.32 0.00 38.06 3.34
4360 4798 5.020132 TGGTTTGATATTCAACCCCGAATT 58.980 37.500 12.32 0.00 38.06 2.17
4361 4799 5.482175 TGGTTTGATATTCAACCCCGAATTT 59.518 36.000 12.32 0.00 38.06 1.82
4362 4800 6.040247 GGTTTGATATTCAACCCCGAATTTC 58.960 40.000 5.92 0.00 33.38 2.17
4363 4801 6.350612 GGTTTGATATTCAACCCCGAATTTCA 60.351 38.462 5.92 0.00 39.81 2.69
4364 4802 6.842437 TTGATATTCAACCCCGAATTTCAA 57.158 33.333 12.48 12.48 44.18 2.69
4365 4803 6.842437 TGATATTCAACCCCGAATTTCAAA 57.158 33.333 4.88 0.00 39.12 2.69
4366 4804 7.233389 TGATATTCAACCCCGAATTTCAAAA 57.767 32.000 4.88 0.00 39.12 2.44
4367 4805 7.093992 TGATATTCAACCCCGAATTTCAAAAC 58.906 34.615 4.88 0.00 39.12 2.43
4368 4806 3.737032 TCAACCCCGAATTTCAAAACC 57.263 42.857 0.00 0.00 0.00 3.27
4369 4807 2.034812 TCAACCCCGAATTTCAAAACCG 59.965 45.455 0.00 0.00 0.00 4.44
4370 4808 0.963225 ACCCCGAATTTCAAAACCGG 59.037 50.000 0.00 0.00 37.27 5.28
4371 4809 0.963225 CCCCGAATTTCAAAACCGGT 59.037 50.000 0.00 0.00 36.40 5.28
4372 4810 1.068125 CCCCGAATTTCAAAACCGGTC 60.068 52.381 8.04 0.00 36.40 4.79
4373 4811 1.609555 CCCGAATTTCAAAACCGGTCA 59.390 47.619 8.04 0.00 36.40 4.02
4374 4812 2.034812 CCCGAATTTCAAAACCGGTCAA 59.965 45.455 8.04 0.00 36.40 3.18
4375 4813 3.047093 CCGAATTTCAAAACCGGTCAAC 58.953 45.455 8.04 0.00 34.66 3.18
4376 4814 3.047093 CGAATTTCAAAACCGGTCAACC 58.953 45.455 8.04 0.00 0.00 3.77
4377 4815 3.243267 CGAATTTCAAAACCGGTCAACCT 60.243 43.478 8.04 0.00 0.00 3.50
4378 4816 4.023878 CGAATTTCAAAACCGGTCAACCTA 60.024 41.667 8.04 0.00 0.00 3.08
4379 4817 4.841443 ATTTCAAAACCGGTCAACCTAC 57.159 40.909 8.04 0.00 0.00 3.18
4380 4818 3.278668 TTCAAAACCGGTCAACCTACA 57.721 42.857 8.04 0.00 0.00 2.74
4381 4819 2.563702 TCAAAACCGGTCAACCTACAC 58.436 47.619 8.04 0.00 0.00 2.90
4382 4820 1.605232 CAAAACCGGTCAACCTACACC 59.395 52.381 8.04 0.00 0.00 4.16
4383 4821 0.109153 AAACCGGTCAACCTACACCC 59.891 55.000 8.04 0.00 0.00 4.61
4384 4822 0.765519 AACCGGTCAACCTACACCCT 60.766 55.000 8.04 0.00 0.00 4.34
4385 4823 1.190178 ACCGGTCAACCTACACCCTC 61.190 60.000 0.00 0.00 0.00 4.30
4386 4824 1.189524 CCGGTCAACCTACACCCTCA 61.190 60.000 0.00 0.00 0.00 3.86
4387 4825 0.682852 CGGTCAACCTACACCCTCAA 59.317 55.000 0.00 0.00 0.00 3.02
4388 4826 1.607251 CGGTCAACCTACACCCTCAAC 60.607 57.143 0.00 0.00 0.00 3.18
4389 4827 1.697982 GGTCAACCTACACCCTCAACT 59.302 52.381 0.00 0.00 0.00 3.16
4390 4828 2.901839 GGTCAACCTACACCCTCAACTA 59.098 50.000 0.00 0.00 0.00 2.24
4391 4829 3.518303 GGTCAACCTACACCCTCAACTAT 59.482 47.826 0.00 0.00 0.00 2.12
4392 4830 4.382793 GGTCAACCTACACCCTCAACTATC 60.383 50.000 0.00 0.00 0.00 2.08
4393 4831 3.773119 TCAACCTACACCCTCAACTATCC 59.227 47.826 0.00 0.00 0.00 2.59
4394 4832 3.484953 ACCTACACCCTCAACTATCCA 57.515 47.619 0.00 0.00 0.00 3.41
4395 4833 3.105283 ACCTACACCCTCAACTATCCAC 58.895 50.000 0.00 0.00 0.00 4.02
4396 4834 3.246021 ACCTACACCCTCAACTATCCACT 60.246 47.826 0.00 0.00 0.00 4.00
4397 4835 3.775316 CCTACACCCTCAACTATCCACTT 59.225 47.826 0.00 0.00 0.00 3.16
4398 4836 3.703001 ACACCCTCAACTATCCACTTG 57.297 47.619 0.00 0.00 0.00 3.16
4399 4837 2.305927 ACACCCTCAACTATCCACTTGG 59.694 50.000 0.00 0.00 0.00 3.61
4400 4838 2.305927 CACCCTCAACTATCCACTTGGT 59.694 50.000 0.00 0.00 36.34 3.67
4401 4839 2.572104 ACCCTCAACTATCCACTTGGTC 59.428 50.000 0.00 0.00 36.34 4.02
4402 4840 2.092914 CCCTCAACTATCCACTTGGTCC 60.093 54.545 0.00 0.00 36.34 4.46
4403 4841 2.571653 CCTCAACTATCCACTTGGTCCA 59.428 50.000 0.00 0.00 36.34 4.02
4404 4842 3.369892 CCTCAACTATCCACTTGGTCCAG 60.370 52.174 0.00 0.00 36.34 3.86
4405 4843 3.515502 CTCAACTATCCACTTGGTCCAGA 59.484 47.826 0.00 0.00 36.34 3.86
4406 4844 3.907474 TCAACTATCCACTTGGTCCAGAA 59.093 43.478 0.00 0.00 36.34 3.02
4407 4845 4.349636 TCAACTATCCACTTGGTCCAGAAA 59.650 41.667 0.00 0.00 36.34 2.52
4408 4846 5.014123 TCAACTATCCACTTGGTCCAGAAAT 59.986 40.000 0.00 0.00 36.34 2.17
4409 4847 5.104259 ACTATCCACTTGGTCCAGAAATC 57.896 43.478 0.00 0.00 36.34 2.17
4410 4848 4.536090 ACTATCCACTTGGTCCAGAAATCA 59.464 41.667 0.00 0.00 36.34 2.57
4411 4849 3.874383 TCCACTTGGTCCAGAAATCAA 57.126 42.857 0.00 0.00 36.34 2.57
4412 4850 3.486383 TCCACTTGGTCCAGAAATCAAC 58.514 45.455 0.00 0.00 36.34 3.18
4413 4851 2.558359 CCACTTGGTCCAGAAATCAACC 59.442 50.000 0.00 0.00 0.00 3.77
4414 4852 2.558359 CACTTGGTCCAGAAATCAACCC 59.442 50.000 0.00 0.00 0.00 4.11
4415 4853 2.447047 ACTTGGTCCAGAAATCAACCCT 59.553 45.455 0.00 0.00 0.00 4.34
4416 4854 3.655777 ACTTGGTCCAGAAATCAACCCTA 59.344 43.478 0.00 0.00 0.00 3.53
4417 4855 3.713826 TGGTCCAGAAATCAACCCTAC 57.286 47.619 0.00 0.00 0.00 3.18
4418 4856 3.256704 TGGTCCAGAAATCAACCCTACT 58.743 45.455 0.00 0.00 0.00 2.57
4419 4857 3.263425 TGGTCCAGAAATCAACCCTACTC 59.737 47.826 0.00 0.00 0.00 2.59
4420 4858 3.519913 GGTCCAGAAATCAACCCTACTCT 59.480 47.826 0.00 0.00 0.00 3.24
4421 4859 4.383226 GGTCCAGAAATCAACCCTACTCTC 60.383 50.000 0.00 0.00 0.00 3.20
4422 4860 3.447586 TCCAGAAATCAACCCTACTCTCG 59.552 47.826 0.00 0.00 0.00 4.04
4423 4861 3.195825 CCAGAAATCAACCCTACTCTCGT 59.804 47.826 0.00 0.00 0.00 4.18
4424 4862 4.322801 CCAGAAATCAACCCTACTCTCGTT 60.323 45.833 0.00 0.00 0.00 3.85
4425 4863 5.238583 CAGAAATCAACCCTACTCTCGTTT 58.761 41.667 0.00 0.00 0.00 3.60
4426 4864 5.701290 CAGAAATCAACCCTACTCTCGTTTT 59.299 40.000 0.00 0.00 0.00 2.43
4427 4865 6.204882 CAGAAATCAACCCTACTCTCGTTTTT 59.795 38.462 0.00 0.00 0.00 1.94
4428 4866 7.386848 CAGAAATCAACCCTACTCTCGTTTTTA 59.613 37.037 0.00 0.00 0.00 1.52
4429 4867 7.935210 AGAAATCAACCCTACTCTCGTTTTTAA 59.065 33.333 0.00 0.00 0.00 1.52
4430 4868 7.430992 AATCAACCCTACTCTCGTTTTTAAC 57.569 36.000 0.00 0.00 0.00 2.01
4431 4869 6.165700 TCAACCCTACTCTCGTTTTTAACT 57.834 37.500 0.00 0.00 0.00 2.24
4432 4870 6.218746 TCAACCCTACTCTCGTTTTTAACTC 58.781 40.000 0.00 0.00 0.00 3.01
4433 4871 5.796424 ACCCTACTCTCGTTTTTAACTCA 57.204 39.130 0.00 0.00 0.00 3.41
4434 4872 5.780984 ACCCTACTCTCGTTTTTAACTCAG 58.219 41.667 0.00 0.00 0.00 3.35
4435 4873 5.303845 ACCCTACTCTCGTTTTTAACTCAGT 59.696 40.000 0.00 0.00 0.00 3.41
4436 4874 5.862860 CCCTACTCTCGTTTTTAACTCAGTC 59.137 44.000 0.00 0.00 0.00 3.51
4437 4875 6.444633 CCTACTCTCGTTTTTAACTCAGTCA 58.555 40.000 0.00 0.00 0.00 3.41
4438 4876 6.921857 CCTACTCTCGTTTTTAACTCAGTCAA 59.078 38.462 0.00 0.00 0.00 3.18
4439 4877 6.830114 ACTCTCGTTTTTAACTCAGTCAAG 57.170 37.500 0.00 0.00 0.00 3.02
4440 4878 6.338937 ACTCTCGTTTTTAACTCAGTCAAGT 58.661 36.000 0.00 0.00 0.00 3.16
4441 4879 6.255887 ACTCTCGTTTTTAACTCAGTCAAGTG 59.744 38.462 0.00 0.00 0.00 3.16
4442 4880 5.522460 TCTCGTTTTTAACTCAGTCAAGTGG 59.478 40.000 0.00 0.00 0.00 4.00
4443 4881 5.180271 TCGTTTTTAACTCAGTCAAGTGGT 58.820 37.500 0.00 0.00 0.00 4.16
4444 4882 5.644636 TCGTTTTTAACTCAGTCAAGTGGTT 59.355 36.000 0.00 0.00 0.00 3.67
4445 4883 6.149807 TCGTTTTTAACTCAGTCAAGTGGTTT 59.850 34.615 0.00 0.00 0.00 3.27
4446 4884 6.804783 CGTTTTTAACTCAGTCAAGTGGTTTT 59.195 34.615 0.00 0.00 0.00 2.43
4447 4885 7.201316 CGTTTTTAACTCAGTCAAGTGGTTTTG 60.201 37.037 0.00 0.00 0.00 2.44
4448 4886 7.455641 TTTTAACTCAGTCAAGTGGTTTTGA 57.544 32.000 0.00 0.00 34.83 2.69
4453 4891 2.018544 TCAAGTGGTTTTGACCGCG 58.981 52.632 0.00 0.00 44.50 6.46
4454 4892 0.745128 TCAAGTGGTTTTGACCGCGT 60.745 50.000 4.92 0.00 44.50 6.01
4455 4893 0.099791 CAAGTGGTTTTGACCGCGTT 59.900 50.000 4.92 0.00 44.50 4.84
4456 4894 0.099791 AAGTGGTTTTGACCGCGTTG 59.900 50.000 4.92 0.00 44.50 4.10
4457 4895 0.745128 AGTGGTTTTGACCGCGTTGA 60.745 50.000 4.92 0.00 44.50 3.18
4458 4896 0.590481 GTGGTTTTGACCGCGTTGAC 60.590 55.000 4.92 0.00 0.00 3.18
4459 4897 0.745128 TGGTTTTGACCGCGTTGACT 60.745 50.000 4.92 0.00 0.00 3.41
4460 4898 0.316689 GGTTTTGACCGCGTTGACTG 60.317 55.000 4.92 0.00 0.00 3.51
4461 4899 0.928451 GTTTTGACCGCGTTGACTGC 60.928 55.000 4.92 0.00 0.00 4.40
4462 4900 1.092921 TTTTGACCGCGTTGACTGCT 61.093 50.000 4.92 0.00 0.00 4.24
4463 4901 1.771073 TTTGACCGCGTTGACTGCTG 61.771 55.000 4.92 0.00 0.00 4.41
4464 4902 2.355837 GACCGCGTTGACTGCTGA 60.356 61.111 4.92 0.00 0.00 4.26
4465 4903 2.658707 GACCGCGTTGACTGCTGAC 61.659 63.158 4.92 0.00 0.00 3.51
4466 4904 2.356313 CCGCGTTGACTGCTGACT 60.356 61.111 4.92 0.00 0.00 3.41
4467 4905 1.080772 CCGCGTTGACTGCTGACTA 60.081 57.895 4.92 0.00 0.00 2.59
4468 4906 1.073216 CCGCGTTGACTGCTGACTAG 61.073 60.000 4.92 0.00 0.00 2.57
4469 4907 1.073216 CGCGTTGACTGCTGACTAGG 61.073 60.000 0.00 0.00 0.00 3.02
4470 4908 1.355066 GCGTTGACTGCTGACTAGGC 61.355 60.000 0.00 2.12 0.00 3.93
4471 4909 0.038251 CGTTGACTGCTGACTAGGCA 60.038 55.000 0.00 0.00 38.10 4.75
4472 4910 1.433534 GTTGACTGCTGACTAGGCAC 58.566 55.000 0.00 0.00 31.65 5.01
4473 4911 1.001406 GTTGACTGCTGACTAGGCACT 59.999 52.381 0.00 0.00 46.37 4.40
4474 4912 1.342074 TGACTGCTGACTAGGCACTT 58.658 50.000 0.00 0.00 41.75 3.16
4475 4913 1.694150 TGACTGCTGACTAGGCACTTT 59.306 47.619 0.00 0.00 41.75 2.66
4476 4914 2.289072 TGACTGCTGACTAGGCACTTTC 60.289 50.000 0.00 0.00 41.75 2.62
4477 4915 1.694150 ACTGCTGACTAGGCACTTTCA 59.306 47.619 0.00 0.00 41.75 2.69
4478 4916 2.304180 ACTGCTGACTAGGCACTTTCAT 59.696 45.455 0.00 0.00 41.75 2.57
4479 4917 2.676839 CTGCTGACTAGGCACTTTCATG 59.323 50.000 0.00 0.00 41.75 3.07
4480 4918 2.038952 TGCTGACTAGGCACTTTCATGT 59.961 45.455 0.00 0.00 41.75 3.21
4481 4919 2.675348 GCTGACTAGGCACTTTCATGTC 59.325 50.000 0.00 0.00 41.75 3.06
4482 4920 3.866066 GCTGACTAGGCACTTTCATGTCA 60.866 47.826 0.00 0.00 41.75 3.58
4483 4921 3.664107 TGACTAGGCACTTTCATGTCAC 58.336 45.455 0.00 0.00 41.75 3.67
4484 4922 3.003480 GACTAGGCACTTTCATGTCACC 58.997 50.000 0.00 0.00 41.75 4.02
4485 4923 2.290323 ACTAGGCACTTTCATGTCACCC 60.290 50.000 0.00 0.00 41.75 4.61
4486 4924 0.773644 AGGCACTTTCATGTCACCCT 59.226 50.000 0.00 0.00 27.25 4.34
4487 4925 1.145738 AGGCACTTTCATGTCACCCTT 59.854 47.619 0.00 0.00 27.25 3.95
4488 4926 2.375174 AGGCACTTTCATGTCACCCTTA 59.625 45.455 0.00 0.00 27.25 2.69
4489 4927 2.749621 GGCACTTTCATGTCACCCTTAG 59.250 50.000 0.00 0.00 0.00 2.18
4490 4928 3.559171 GGCACTTTCATGTCACCCTTAGA 60.559 47.826 0.00 0.00 0.00 2.10
4491 4929 3.437049 GCACTTTCATGTCACCCTTAGAC 59.563 47.826 0.00 0.00 36.55 2.59
4492 4930 4.003648 CACTTTCATGTCACCCTTAGACC 58.996 47.826 0.00 0.00 35.15 3.85
4493 4931 3.650942 ACTTTCATGTCACCCTTAGACCA 59.349 43.478 0.00 0.00 35.15 4.02
4494 4932 4.289672 ACTTTCATGTCACCCTTAGACCAT 59.710 41.667 0.00 0.00 35.15 3.55
4495 4933 4.487714 TTCATGTCACCCTTAGACCATC 57.512 45.455 0.00 0.00 35.15 3.51
4496 4934 3.724478 TCATGTCACCCTTAGACCATCT 58.276 45.455 0.00 0.00 35.15 2.90
4497 4935 3.452264 TCATGTCACCCTTAGACCATCTG 59.548 47.826 0.00 0.00 35.15 2.90
4498 4936 2.187958 TGTCACCCTTAGACCATCTGG 58.812 52.381 0.00 0.00 42.17 3.86
4499 4937 1.486726 GTCACCCTTAGACCATCTGGG 59.513 57.143 0.54 0.00 43.26 4.45
4500 4938 1.364678 TCACCCTTAGACCATCTGGGA 59.635 52.381 7.97 0.00 40.23 4.37
4501 4939 2.022035 TCACCCTTAGACCATCTGGGAT 60.022 50.000 7.97 0.00 40.23 3.85
4502 4940 2.370189 CACCCTTAGACCATCTGGGATC 59.630 54.545 7.97 0.00 40.23 3.36
4503 4941 1.981495 CCCTTAGACCATCTGGGATCC 59.019 57.143 1.92 1.92 40.23 3.36
4504 4942 2.694397 CCTTAGACCATCTGGGATCCA 58.306 52.381 15.23 0.00 41.15 3.41
4505 4943 3.254960 CCTTAGACCATCTGGGATCCAT 58.745 50.000 15.23 0.00 41.15 3.41
4506 4944 4.429505 CCTTAGACCATCTGGGATCCATA 58.570 47.826 15.23 0.38 41.15 2.74
4507 4945 4.223923 CCTTAGACCATCTGGGATCCATAC 59.776 50.000 15.23 0.00 41.15 2.39
4508 4946 3.350992 AGACCATCTGGGATCCATACA 57.649 47.619 15.23 1.11 41.15 2.29
4509 4947 3.668821 AGACCATCTGGGATCCATACAA 58.331 45.455 15.23 0.00 41.15 2.41
4510 4948 3.649981 AGACCATCTGGGATCCATACAAG 59.350 47.826 15.23 2.82 41.15 3.16
4511 4949 3.648067 GACCATCTGGGATCCATACAAGA 59.352 47.826 15.23 8.29 41.15 3.02
4512 4950 4.047166 ACCATCTGGGATCCATACAAGAA 58.953 43.478 15.23 0.00 41.15 2.52
4513 4951 4.478317 ACCATCTGGGATCCATACAAGAAA 59.522 41.667 15.23 0.00 41.15 2.52
4514 4952 5.044179 ACCATCTGGGATCCATACAAGAAAA 60.044 40.000 15.23 0.00 41.15 2.29
4515 4953 5.893255 CCATCTGGGATCCATACAAGAAAAA 59.107 40.000 15.23 0.00 40.01 1.94
4548 4986 2.416680 AATGCCCTCTCTTTCTCTGC 57.583 50.000 0.00 0.00 0.00 4.26
4549 4987 1.582389 ATGCCCTCTCTTTCTCTGCT 58.418 50.000 0.00 0.00 0.00 4.24
4550 4988 0.901124 TGCCCTCTCTTTCTCTGCTC 59.099 55.000 0.00 0.00 0.00 4.26
4551 4989 0.179113 GCCCTCTCTTTCTCTGCTCG 60.179 60.000 0.00 0.00 0.00 5.03
4552 4990 0.459489 CCCTCTCTTTCTCTGCTCGG 59.541 60.000 0.00 0.00 0.00 4.63
4553 4991 0.179113 CCTCTCTTTCTCTGCTCGGC 60.179 60.000 0.00 0.00 0.00 5.54
4554 4992 0.179113 CTCTCTTTCTCTGCTCGGCC 60.179 60.000 0.00 0.00 0.00 6.13
4555 4993 1.153469 CTCTTTCTCTGCTCGGCCC 60.153 63.158 0.00 0.00 0.00 5.80
4556 4994 2.124942 CTTTCTCTGCTCGGCCCC 60.125 66.667 0.00 0.00 0.00 5.80
4557 4995 2.927856 TTTCTCTGCTCGGCCCCA 60.928 61.111 0.00 0.00 0.00 4.96
4558 4996 2.866085 CTTTCTCTGCTCGGCCCCAG 62.866 65.000 0.00 1.25 0.00 4.45
4573 5011 4.127040 CAGCAGCGCCGTCTCTCT 62.127 66.667 2.29 0.00 0.00 3.10
4574 5012 3.821055 AGCAGCGCCGTCTCTCTC 61.821 66.667 2.29 0.00 0.00 3.20
4575 5013 3.821055 GCAGCGCCGTCTCTCTCT 61.821 66.667 2.29 0.00 0.00 3.10
4576 5014 2.407210 CAGCGCCGTCTCTCTCTC 59.593 66.667 2.29 0.00 0.00 3.20
4577 5015 2.112198 CAGCGCCGTCTCTCTCTCT 61.112 63.158 2.29 0.00 0.00 3.10
4578 5016 1.817941 AGCGCCGTCTCTCTCTCTC 60.818 63.158 2.29 0.00 0.00 3.20
4579 5017 1.817941 GCGCCGTCTCTCTCTCTCT 60.818 63.158 0.00 0.00 0.00 3.10
4580 5018 1.772063 GCGCCGTCTCTCTCTCTCTC 61.772 65.000 0.00 0.00 0.00 3.20
4581 5019 0.179084 CGCCGTCTCTCTCTCTCTCT 60.179 60.000 0.00 0.00 0.00 3.10
4582 5020 1.583054 GCCGTCTCTCTCTCTCTCTC 58.417 60.000 0.00 0.00 0.00 3.20
4583 5021 1.852942 CCGTCTCTCTCTCTCTCTCG 58.147 60.000 0.00 0.00 0.00 4.04
4584 5022 1.136305 CCGTCTCTCTCTCTCTCTCGT 59.864 57.143 0.00 0.00 0.00 4.18
4585 5023 2.418197 CCGTCTCTCTCTCTCTCTCGTT 60.418 54.545 0.00 0.00 0.00 3.85
4586 5024 2.858344 CGTCTCTCTCTCTCTCTCGTTC 59.142 54.545 0.00 0.00 0.00 3.95
4587 5025 3.428999 CGTCTCTCTCTCTCTCTCGTTCT 60.429 52.174 0.00 0.00 0.00 3.01
4588 5026 4.504858 GTCTCTCTCTCTCTCTCGTTCTT 58.495 47.826 0.00 0.00 0.00 2.52
4589 5027 5.657474 GTCTCTCTCTCTCTCTCGTTCTTA 58.343 45.833 0.00 0.00 0.00 2.10
4590 5028 6.281405 GTCTCTCTCTCTCTCTCGTTCTTAT 58.719 44.000 0.00 0.00 0.00 1.73
4591 5029 6.421202 GTCTCTCTCTCTCTCTCGTTCTTATC 59.579 46.154 0.00 0.00 0.00 1.75
4592 5030 5.607477 TCTCTCTCTCTCTCGTTCTTATCC 58.393 45.833 0.00 0.00 0.00 2.59
4593 5031 4.710324 TCTCTCTCTCTCGTTCTTATCCC 58.290 47.826 0.00 0.00 0.00 3.85
4594 5032 3.818773 CTCTCTCTCTCGTTCTTATCCCC 59.181 52.174 0.00 0.00 0.00 4.81
4595 5033 3.460340 TCTCTCTCTCGTTCTTATCCCCT 59.540 47.826 0.00 0.00 0.00 4.79
4596 5034 3.556999 TCTCTCTCGTTCTTATCCCCTG 58.443 50.000 0.00 0.00 0.00 4.45
4597 5035 2.625790 CTCTCTCGTTCTTATCCCCTGG 59.374 54.545 0.00 0.00 0.00 4.45
4598 5036 1.689273 CTCTCGTTCTTATCCCCTGGG 59.311 57.143 5.50 5.50 0.00 4.45
4608 5046 3.066944 TCCCCTGGGATCTCTCTCT 57.933 57.895 16.20 0.00 39.76 3.10
4609 5047 0.856982 TCCCCTGGGATCTCTCTCTC 59.143 60.000 16.20 0.00 39.76 3.20
4610 5048 0.859760 CCCCTGGGATCTCTCTCTCT 59.140 60.000 16.20 0.00 37.50 3.10
4611 5049 1.220236 CCCCTGGGATCTCTCTCTCTT 59.780 57.143 16.20 0.00 37.50 2.85
4612 5050 2.597455 CCCTGGGATCTCTCTCTCTTC 58.403 57.143 7.01 0.00 0.00 2.87
4613 5051 2.597455 CCTGGGATCTCTCTCTCTTCC 58.403 57.143 0.00 0.00 0.00 3.46
4614 5052 2.597455 CTGGGATCTCTCTCTCTTCCC 58.403 57.143 0.00 0.00 45.28 3.97
4615 5053 2.765689 GGGATCTCTCTCTCTTCCCA 57.234 55.000 1.42 0.00 44.58 4.37
4616 5054 3.039252 GGGATCTCTCTCTCTTCCCAA 57.961 52.381 1.42 0.00 44.58 4.12
4617 5055 3.586429 GGGATCTCTCTCTCTTCCCAAT 58.414 50.000 1.42 0.00 44.58 3.16
4618 5056 3.578282 GGGATCTCTCTCTCTTCCCAATC 59.422 52.174 1.42 0.00 44.58 2.67
4619 5057 3.578282 GGATCTCTCTCTCTTCCCAATCC 59.422 52.174 0.00 0.00 0.00 3.01
4620 5058 3.039252 TCTCTCTCTCTTCCCAATCCC 57.961 52.381 0.00 0.00 0.00 3.85
4621 5059 1.686052 CTCTCTCTCTTCCCAATCCCG 59.314 57.143 0.00 0.00 0.00 5.14
4622 5060 1.007238 TCTCTCTCTTCCCAATCCCGT 59.993 52.381 0.00 0.00 0.00 5.28
4623 5061 1.137872 CTCTCTCTTCCCAATCCCGTG 59.862 57.143 0.00 0.00 0.00 4.94
4624 5062 1.195115 CTCTCTTCCCAATCCCGTGA 58.805 55.000 0.00 0.00 0.00 4.35
4625 5063 0.902531 TCTCTTCCCAATCCCGTGAC 59.097 55.000 0.00 0.00 0.00 3.67
4626 5064 0.107654 CTCTTCCCAATCCCGTGACC 60.108 60.000 0.00 0.00 0.00 4.02
4627 5065 1.449601 CTTCCCAATCCCGTGACCG 60.450 63.158 0.00 0.00 0.00 4.79
4628 5066 3.615509 TTCCCAATCCCGTGACCGC 62.616 63.158 0.00 0.00 0.00 5.68
4647 5085 3.462678 GGAGACCCAGCCTCCGTC 61.463 72.222 0.00 0.00 40.58 4.79
4648 5086 3.462678 GAGACCCAGCCTCCGTCC 61.463 72.222 0.00 0.00 0.00 4.79
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
40 41 1.373497 CGCTGGTCGGATCTATGCC 60.373 63.158 0.00 0.00 33.78 4.40
41 42 0.941463 CACGCTGGTCGGATCTATGC 60.941 60.000 0.00 0.00 43.86 3.14
42 43 0.941463 GCACGCTGGTCGGATCTATG 60.941 60.000 0.00 0.00 43.86 2.23
43 44 1.364171 GCACGCTGGTCGGATCTAT 59.636 57.895 0.00 0.00 43.86 1.98
44 45 2.782222 GGCACGCTGGTCGGATCTA 61.782 63.158 0.00 0.00 43.86 1.98
45 46 4.148825 GGCACGCTGGTCGGATCT 62.149 66.667 0.00 0.00 43.86 2.75
58 59 3.188786 GTCAGTGATCCGCGGCAC 61.189 66.667 23.51 23.48 35.30 5.01
59 60 4.794439 CGTCAGTGATCCGCGGCA 62.794 66.667 23.51 11.48 0.00 5.69
60 61 4.796231 ACGTCAGTGATCCGCGGC 62.796 66.667 23.51 8.29 0.00 6.53
70 71 3.369381 GCATATCTGCCACGTCAGT 57.631 52.632 4.38 0.00 42.88 3.41
104 105 1.793134 GCACCATGCAGAGGCTATGC 61.793 60.000 26.30 26.30 44.26 3.14
105 106 1.504647 CGCACCATGCAGAGGCTATG 61.505 60.000 4.40 4.40 45.36 2.23
106 107 1.227764 CGCACCATGCAGAGGCTAT 60.228 57.895 7.84 0.00 45.36 2.97
107 108 2.187685 CGCACCATGCAGAGGCTA 59.812 61.111 7.84 0.00 45.36 3.93
108 109 4.790962 CCGCACCATGCAGAGGCT 62.791 66.667 7.84 0.00 45.36 4.58
111 112 4.790962 AGGCCGCACCATGCAGAG 62.791 66.667 0.00 0.00 45.36 3.35
116 117 2.903855 GATCCAGGCCGCACCATG 60.904 66.667 0.00 0.00 43.14 3.66
117 118 2.288642 ATTGATCCAGGCCGCACCAT 62.289 55.000 0.00 0.00 43.14 3.55
118 119 2.982643 ATTGATCCAGGCCGCACCA 61.983 57.895 0.00 0.00 43.14 4.17
119 120 2.124151 ATTGATCCAGGCCGCACC 60.124 61.111 0.00 0.00 39.61 5.01
120 121 1.451927 TCATTGATCCAGGCCGCAC 60.452 57.895 0.00 0.00 0.00 5.34
121 122 1.451927 GTCATTGATCCAGGCCGCA 60.452 57.895 0.00 0.00 0.00 5.69
122 123 2.537560 CGTCATTGATCCAGGCCGC 61.538 63.158 0.00 0.00 0.00 6.53
123 124 1.153369 ACGTCATTGATCCAGGCCG 60.153 57.895 0.00 0.00 0.00 6.13
124 125 1.097547 CCACGTCATTGATCCAGGCC 61.098 60.000 0.00 0.00 0.00 5.19
125 126 1.718757 GCCACGTCATTGATCCAGGC 61.719 60.000 6.62 6.62 0.00 4.85
126 127 1.097547 GGCCACGTCATTGATCCAGG 61.098 60.000 0.00 0.00 0.00 4.45
127 128 0.107508 AGGCCACGTCATTGATCCAG 60.108 55.000 5.01 0.00 0.00 3.86
128 129 0.392863 CAGGCCACGTCATTGATCCA 60.393 55.000 5.01 0.00 0.00 3.41
129 130 1.718757 GCAGGCCACGTCATTGATCC 61.719 60.000 5.01 0.00 0.00 3.36
130 131 1.723870 GCAGGCCACGTCATTGATC 59.276 57.895 5.01 0.00 0.00 2.92
131 132 2.108514 CGCAGGCCACGTCATTGAT 61.109 57.895 5.01 0.00 0.00 2.57
132 133 2.741985 CGCAGGCCACGTCATTGA 60.742 61.111 5.01 0.00 0.00 2.57
133 134 3.803082 CCGCAGGCCACGTCATTG 61.803 66.667 15.92 0.00 46.14 2.82
145 146 2.279517 GTCGGCATAGGTCCGCAG 60.280 66.667 5.55 0.00 46.05 5.18
146 147 4.201679 CGTCGGCATAGGTCCGCA 62.202 66.667 5.55 0.00 46.05 5.69
147 148 4.944372 CCGTCGGCATAGGTCCGC 62.944 72.222 0.00 1.58 46.05 5.54
178 179 1.299468 GTCAGAGCTATGCCGACGG 60.299 63.158 10.29 10.29 0.00 4.79
179 180 1.655654 CGTCAGAGCTATGCCGACG 60.656 63.158 5.77 6.30 42.79 5.12
180 181 1.946650 GCGTCAGAGCTATGCCGAC 60.947 63.158 16.81 3.22 0.00 4.79
181 182 2.413351 GCGTCAGAGCTATGCCGA 59.587 61.111 16.81 0.00 0.00 5.54
182 183 2.659897 GGCGTCAGAGCTATGCCG 60.660 66.667 7.52 7.52 39.14 5.69
183 184 2.659897 CGGCGTCAGAGCTATGCC 60.660 66.667 2.68 5.76 44.19 4.40
184 185 1.084370 AAACGGCGTCAGAGCTATGC 61.084 55.000 15.17 0.00 37.29 3.14
185 186 0.647410 CAAACGGCGTCAGAGCTATG 59.353 55.000 15.17 0.69 37.29 2.23
186 187 1.084370 GCAAACGGCGTCAGAGCTAT 61.084 55.000 15.17 0.00 37.29 2.97
187 188 1.736645 GCAAACGGCGTCAGAGCTA 60.737 57.895 15.17 0.00 37.29 3.32
188 189 3.044305 GCAAACGGCGTCAGAGCT 61.044 61.111 15.17 0.00 37.29 4.09
189 190 4.090057 GGCAAACGGCGTCAGAGC 62.090 66.667 15.17 14.84 46.16 4.09
190 191 2.664851 TGGCAAACGGCGTCAGAG 60.665 61.111 15.17 4.71 46.16 3.35
191 192 2.664851 CTGGCAAACGGCGTCAGA 60.665 61.111 15.17 0.00 46.16 3.27
192 193 3.726517 CCTGGCAAACGGCGTCAG 61.727 66.667 15.17 16.17 46.16 3.51
216 217 4.849310 CATACACGTGGGGCCCGG 62.849 72.222 21.57 15.28 0.00 5.73
220 221 4.460683 TCGGCATACACGTGGGGC 62.461 66.667 21.57 18.79 0.00 5.80
221 222 2.510691 GTCGGCATACACGTGGGG 60.511 66.667 21.57 9.70 0.00 4.96
222 223 2.883730 CGTCGGCATACACGTGGG 60.884 66.667 21.57 10.08 0.00 4.61
223 224 2.883730 CCGTCGGCATACACGTGG 60.884 66.667 21.57 2.89 34.06 4.94
245 246 1.585521 CAGCTACCGTCGGCTTACG 60.586 63.158 12.28 4.67 46.11 3.18
246 247 0.525029 GACAGCTACCGTCGGCTTAC 60.525 60.000 12.28 0.00 36.59 2.34
247 248 1.805254 GACAGCTACCGTCGGCTTA 59.195 57.895 12.28 0.00 36.59 3.09
248 249 2.572284 GACAGCTACCGTCGGCTT 59.428 61.111 12.28 0.00 36.59 4.35
253 254 2.056481 ATACGCCGACAGCTACCGTC 62.056 60.000 0.00 0.00 40.39 4.79
254 255 0.815213 TATACGCCGACAGCTACCGT 60.815 55.000 0.00 4.40 40.39 4.83
255 256 0.520404 ATATACGCCGACAGCTACCG 59.480 55.000 0.00 0.00 40.39 4.02
256 257 1.268899 ACATATACGCCGACAGCTACC 59.731 52.381 0.00 0.00 40.39 3.18
257 258 2.701073 ACATATACGCCGACAGCTAC 57.299 50.000 0.00 0.00 40.39 3.58
258 259 2.161012 GCTACATATACGCCGACAGCTA 59.839 50.000 0.00 0.00 40.39 3.32
259 260 1.068472 GCTACATATACGCCGACAGCT 60.068 52.381 0.00 0.00 40.39 4.24
260 261 1.068472 AGCTACATATACGCCGACAGC 60.068 52.381 0.00 0.00 38.52 4.40
261 262 2.991434 AGCTACATATACGCCGACAG 57.009 50.000 0.00 0.00 0.00 3.51
262 263 2.745821 CCTAGCTACATATACGCCGACA 59.254 50.000 0.00 0.00 0.00 4.35
263 264 2.477525 GCCTAGCTACATATACGCCGAC 60.478 54.545 0.00 0.00 0.00 4.79
264 265 1.741706 GCCTAGCTACATATACGCCGA 59.258 52.381 0.00 0.00 0.00 5.54
265 266 1.202268 GGCCTAGCTACATATACGCCG 60.202 57.143 0.00 0.00 0.00 6.46
266 267 1.202268 CGGCCTAGCTACATATACGCC 60.202 57.143 0.00 0.00 0.00 5.68
267 268 1.741706 TCGGCCTAGCTACATATACGC 59.258 52.381 0.00 0.00 0.00 4.42
268 269 2.222976 CGTCGGCCTAGCTACATATACG 60.223 54.545 0.00 0.00 0.00 3.06
269 270 2.097142 CCGTCGGCCTAGCTACATATAC 59.903 54.545 0.00 0.00 0.00 1.47
270 271 2.362736 CCGTCGGCCTAGCTACATATA 58.637 52.381 0.00 0.00 0.00 0.86
271 272 1.174783 CCGTCGGCCTAGCTACATAT 58.825 55.000 0.00 0.00 0.00 1.78
272 273 1.521450 GCCGTCGGCCTAGCTACATA 61.521 60.000 26.23 0.00 44.06 2.29
273 274 2.857744 GCCGTCGGCCTAGCTACAT 61.858 63.158 26.23 0.00 44.06 2.29
274 275 3.524606 GCCGTCGGCCTAGCTACA 61.525 66.667 26.23 0.00 44.06 2.74
284 285 2.960129 GCATAGAACGGCCGTCGG 60.960 66.667 34.29 19.49 44.45 4.79
285 286 2.960129 GGCATAGAACGGCCGTCG 60.960 66.667 34.29 18.28 40.93 5.12
289 290 2.960129 CGTCGGCATAGAACGGCC 60.960 66.667 0.00 0.00 46.80 6.13
290 291 2.960129 CCGTCGGCATAGAACGGC 60.960 66.667 0.00 0.00 37.16 5.68
291 292 2.279252 CCCGTCGGCATAGAACGG 60.279 66.667 5.50 6.20 42.91 4.44
292 293 1.876714 CACCCGTCGGCATAGAACG 60.877 63.158 5.50 0.00 0.00 3.95
293 294 2.171725 GCACCCGTCGGCATAGAAC 61.172 63.158 5.50 0.00 0.00 3.01
294 295 2.185867 GCACCCGTCGGCATAGAA 59.814 61.111 5.50 0.00 0.00 2.10
295 296 3.845259 GGCACCCGTCGGCATAGA 61.845 66.667 5.50 0.00 0.00 1.98
311 312 1.658717 CGCAGAGATAAGCCGACGG 60.659 63.158 10.29 10.29 0.00 4.79
312 313 0.306840 TACGCAGAGATAAGCCGACG 59.693 55.000 0.00 0.00 0.00 5.12
313 314 1.926827 GCTACGCAGAGATAAGCCGAC 60.927 57.143 0.00 0.00 0.00 4.79
314 315 0.311165 GCTACGCAGAGATAAGCCGA 59.689 55.000 0.00 0.00 0.00 5.54
315 316 0.664767 GGCTACGCAGAGATAAGCCG 60.665 60.000 0.00 0.00 42.98 5.52
316 317 3.202923 GGCTACGCAGAGATAAGCC 57.797 57.895 0.00 0.00 45.37 4.35
317 318 0.664767 CGGGCTACGCAGAGATAAGC 60.665 60.000 0.00 0.00 34.82 3.09
318 319 0.952280 TCGGGCTACGCAGAGATAAG 59.048 55.000 0.00 0.00 43.86 1.73
319 320 0.666913 GTCGGGCTACGCAGAGATAA 59.333 55.000 0.00 0.00 43.86 1.75
320 321 1.504647 CGTCGGGCTACGCAGAGATA 61.505 60.000 0.37 0.00 43.86 1.98
321 322 2.835705 CGTCGGGCTACGCAGAGAT 61.836 63.158 0.37 0.00 43.86 2.75
322 323 3.506096 CGTCGGGCTACGCAGAGA 61.506 66.667 0.37 0.00 43.86 3.10
323 324 4.554363 CCGTCGGGCTACGCAGAG 62.554 72.222 2.34 0.00 43.86 3.35
333 334 2.812178 CGTACAAAGGCCGTCGGG 60.812 66.667 14.38 0.00 0.00 5.14
334 335 3.484547 GCGTACAAAGGCCGTCGG 61.485 66.667 6.99 6.99 0.00 4.79
335 336 3.484547 GGCGTACAAAGGCCGTCG 61.485 66.667 0.00 0.00 45.99 5.12
340 341 3.484547 CCGTCGGCGTACAAAGGC 61.485 66.667 9.28 0.00 36.15 4.35
341 342 3.484547 GCCGTCGGCGTACAAAGG 61.485 66.667 22.50 0.00 39.62 3.11
351 352 4.760047 CCTGGTTCTGGCCGTCGG 62.760 72.222 6.99 6.99 0.00 4.79
357 358 2.743928 CGACAGCCTGGTTCTGGC 60.744 66.667 7.59 7.59 46.61 4.85
358 359 2.046892 CCGACAGCCTGGTTCTGG 60.047 66.667 0.00 0.00 35.94 3.86
359 360 2.743928 GCCGACAGCCTGGTTCTG 60.744 66.667 0.00 0.00 37.56 3.02
360 361 1.264749 TATGCCGACAGCCTGGTTCT 61.265 55.000 0.00 0.00 42.71 3.01
361 362 0.179045 ATATGCCGACAGCCTGGTTC 60.179 55.000 0.00 0.00 42.71 3.62
362 363 0.179045 GATATGCCGACAGCCTGGTT 60.179 55.000 0.00 0.00 42.71 3.67
363 364 1.050988 AGATATGCCGACAGCCTGGT 61.051 55.000 0.00 0.00 42.71 4.00
364 365 0.320247 GAGATATGCCGACAGCCTGG 60.320 60.000 0.00 0.00 42.71 4.45
365 366 0.320247 GGAGATATGCCGACAGCCTG 60.320 60.000 0.00 0.00 42.71 4.85
366 367 2.053618 GGAGATATGCCGACAGCCT 58.946 57.895 0.00 0.00 42.71 4.58
367 368 4.683432 GGAGATATGCCGACAGCC 57.317 61.111 0.00 0.00 42.71 4.85
374 375 0.036858 GGCTTCTCCGGAGATATGCC 60.037 60.000 35.99 35.99 39.52 4.40
375 376 3.523806 GGCTTCTCCGGAGATATGC 57.476 57.895 33.97 31.73 37.29 3.14
402 403 3.039202 GCCAGAACAATGCCGACGG 62.039 63.158 10.29 10.29 0.00 4.79
403 404 2.480555 GCCAGAACAATGCCGACG 59.519 61.111 0.00 0.00 0.00 5.12
404 405 2.877691 GGCCAGAACAATGCCGAC 59.122 61.111 0.00 0.00 35.08 4.79
407 408 2.877691 GACGGCCAGAACAATGCC 59.122 61.111 2.24 0.00 41.85 4.40
408 409 2.480555 CGACGGCCAGAACAATGC 59.519 61.111 2.24 0.00 0.00 3.56
409 410 2.398554 CCCGACGGCCAGAACAATG 61.399 63.158 8.86 0.00 0.00 2.82
410 411 2.046314 CCCGACGGCCAGAACAAT 60.046 61.111 8.86 0.00 0.00 2.71
411 412 4.323477 CCCCGACGGCCAGAACAA 62.323 66.667 8.86 0.00 0.00 2.83
413 414 2.728435 ATACCCCGACGGCCAGAAC 61.728 63.158 8.86 0.00 33.26 3.01
414 415 2.364579 ATACCCCGACGGCCAGAA 60.365 61.111 8.86 0.00 33.26 3.02
415 416 3.151710 CATACCCCGACGGCCAGA 61.152 66.667 8.86 0.00 33.26 3.86
416 417 4.235762 CCATACCCCGACGGCCAG 62.236 72.222 8.86 1.45 33.26 4.85
427 428 1.339644 TACCGGAACAGGGCCATACC 61.340 60.000 9.46 0.73 35.02 2.73
428 429 0.106149 CTACCGGAACAGGGCCATAC 59.894 60.000 9.46 0.00 35.02 2.39
429 430 0.325860 ACTACCGGAACAGGGCCATA 60.326 55.000 9.46 0.00 35.02 2.74
430 431 1.615424 ACTACCGGAACAGGGCCAT 60.615 57.895 9.46 0.00 35.02 4.40
431 432 2.203877 ACTACCGGAACAGGGCCA 60.204 61.111 9.46 0.00 35.02 5.36
432 433 2.120737 AACACTACCGGAACAGGGCC 62.121 60.000 9.46 0.00 35.02 5.80
433 434 0.672711 GAACACTACCGGAACAGGGC 60.673 60.000 9.46 0.00 35.02 5.19
434 435 0.974383 AGAACACTACCGGAACAGGG 59.026 55.000 9.46 5.74 35.02 4.45
435 436 1.067071 GGAGAACACTACCGGAACAGG 60.067 57.143 9.46 0.00 37.30 4.00
436 437 1.893801 AGGAGAACACTACCGGAACAG 59.106 52.381 9.46 4.49 0.00 3.16
437 438 2.005370 AGGAGAACACTACCGGAACA 57.995 50.000 9.46 0.00 0.00 3.18
438 439 2.036862 ACAAGGAGAACACTACCGGAAC 59.963 50.000 9.46 0.00 0.00 3.62
439 440 2.298163 GACAAGGAGAACACTACCGGAA 59.702 50.000 9.46 0.00 0.00 4.30
440 441 1.891150 GACAAGGAGAACACTACCGGA 59.109 52.381 9.46 0.00 0.00 5.14
441 442 1.402456 CGACAAGGAGAACACTACCGG 60.402 57.143 0.00 0.00 0.00 5.28
442 443 1.268899 ACGACAAGGAGAACACTACCG 59.731 52.381 0.00 0.00 0.00 4.02
443 444 2.673833 CACGACAAGGAGAACACTACC 58.326 52.381 0.00 0.00 0.00 3.18
444 445 2.059541 GCACGACAAGGAGAACACTAC 58.940 52.381 0.00 0.00 0.00 2.73
445 446 1.684450 TGCACGACAAGGAGAACACTA 59.316 47.619 0.00 0.00 0.00 2.74
446 447 0.464036 TGCACGACAAGGAGAACACT 59.536 50.000 0.00 0.00 0.00 3.55
447 448 1.512926 ATGCACGACAAGGAGAACAC 58.487 50.000 0.00 0.00 0.00 3.32
448 449 3.261580 CATATGCACGACAAGGAGAACA 58.738 45.455 0.00 0.00 0.00 3.18
449 450 2.030946 GCATATGCACGACAAGGAGAAC 59.969 50.000 22.84 0.00 41.59 3.01
732 733 2.456119 CGATGAGCTGGTTGTCGCC 61.456 63.158 0.00 0.00 0.00 5.54
792 800 0.790207 TTCGCGCTAAAGTTGAGCAG 59.210 50.000 12.86 5.77 40.09 4.24
853 862 8.375506 TCTTGTAGGTTCAAGATGTACAGATTT 58.624 33.333 0.33 0.00 45.62 2.17
927 936 5.627172 TGGATAAAAACAAGAATTCGAGCG 58.373 37.500 0.00 0.00 0.00 5.03
954 963 7.097192 TGATGGTATCTCGCCAAATAATCTAC 58.903 38.462 0.00 0.00 39.72 2.59
976 985 3.208692 AGGGAGAGGTTCCTAGTGATGAT 59.791 47.826 0.00 0.00 45.98 2.45
982 991 4.901785 TCATAAGGGAGAGGTTCCTAGT 57.098 45.455 0.00 0.00 45.98 2.57
1003 1013 5.888161 GGTTGTTACCCATGAGATCAAGATT 59.112 40.000 0.00 0.00 38.60 2.40
1053 1063 3.732212 TGATAAGCTGGACATCATTCCG 58.268 45.455 0.00 0.00 38.69 4.30
1254 1264 1.739338 CTACTGAGGCTGGTAGGCGG 61.739 65.000 13.37 0.00 46.58 6.13
1257 1267 1.195115 TTGCTACTGAGGCTGGTAGG 58.805 55.000 19.29 7.40 36.76 3.18
1299 1309 0.472471 AGAAGTTCGGGCCAAACTGA 59.528 50.000 20.00 0.00 37.06 3.41
1311 1321 2.919971 AGTGCCGCTGAAGAAGTTC 58.080 52.632 0.00 0.00 0.00 3.01
1356 1366 5.074377 TGAGAGCTCTAGGGACAAGAGATAT 59.926 44.000 18.25 0.00 39.71 1.63
1389 1399 0.178964 TGGGTTCTTTGGCCTCAAGG 60.179 55.000 3.32 0.00 33.98 3.61
1395 1405 0.822121 AGTCGTTGGGTTCTTTGGCC 60.822 55.000 0.00 0.00 0.00 5.36
1476 1486 1.412505 GGAAGGACACCCCCAAACTTT 60.413 52.381 0.00 0.00 34.66 2.66
1500 1510 4.608948 AGTGGAAAGGTTAGACACTGAG 57.391 45.455 0.00 0.00 40.56 3.35
1506 1516 3.041508 AGCGAAGTGGAAAGGTTAGAC 57.958 47.619 0.00 0.00 0.00 2.59
1665 1675 6.851222 TCTACAGAGAAAAGCTGAAGTTTG 57.149 37.500 0.00 0.00 36.86 2.93
1794 1804 2.806244 CAACTTGGTCAGGTTTCCTACG 59.194 50.000 0.00 0.00 29.64 3.51
2204 2214 3.605664 GCACTTGGCCGGCAAAGT 61.606 61.111 38.35 38.35 40.57 2.66
2256 2266 8.330302 CAGAGTTTTCCATTGTTTTCAATTGAC 58.670 33.333 7.89 0.00 46.94 3.18
2298 2308 4.098914 TGAACAAGGAGGCAAATGTAGT 57.901 40.909 0.00 0.00 0.00 2.73
2461 2471 1.142688 ATTGGGAGGCCTTGTCTGGT 61.143 55.000 6.77 0.00 0.00 4.00
2616 2626 4.438744 GGAGTGTGAACTTTCAACACCTTG 60.439 45.833 15.24 0.00 39.21 3.61
3172 3182 2.808244 ACACCACAACTTTTGATTGCG 58.192 42.857 0.00 0.00 0.00 4.85
3398 3409 3.883489 TCGACATACTCACATAGACCCAG 59.117 47.826 0.00 0.00 0.00 4.45
3657 3671 9.858247 ATTACATTAACACGCTTAATATTCACG 57.142 29.630 0.00 0.00 0.00 4.35
3872 3888 3.350219 TGAACAGGAGGCTTATGAACC 57.650 47.619 6.87 0.00 0.00 3.62
3886 3902 3.079578 ACCAGCAAGTCATCATGAACAG 58.920 45.455 0.00 0.00 0.00 3.16
3887 3903 2.815503 CACCAGCAAGTCATCATGAACA 59.184 45.455 0.00 0.00 0.00 3.18
3924 3940 6.540438 AGACATACATTTAAGAACGGAGGA 57.460 37.500 0.00 0.00 0.00 3.71
3940 3956 8.721478 TGCAGTGAAATCTCTTAAAAGACATAC 58.279 33.333 0.00 0.00 0.00 2.39
3942 3958 7.750229 TGCAGTGAAATCTCTTAAAAGACAT 57.250 32.000 0.00 0.00 0.00 3.06
3950 3966 9.151471 GTATGTAGTTTGCAGTGAAATCTCTTA 57.849 33.333 0.00 0.00 0.00 2.10
3951 3967 7.148573 CGTATGTAGTTTGCAGTGAAATCTCTT 60.149 37.037 0.00 0.00 0.00 2.85
3955 3971 5.350365 TCCGTATGTAGTTTGCAGTGAAATC 59.650 40.000 0.00 0.00 0.00 2.17
4049 4067 8.368668 CCTCCGTTCCTAAATATATGTCTCTTT 58.631 37.037 0.00 0.00 0.00 2.52
4051 4069 7.239438 TCCTCCGTTCCTAAATATATGTCTCT 58.761 38.462 0.00 0.00 0.00 3.10
4052 4070 7.463961 TCCTCCGTTCCTAAATATATGTCTC 57.536 40.000 0.00 0.00 0.00 3.36
4054 4072 7.668492 ACTTCCTCCGTTCCTAAATATATGTC 58.332 38.462 0.00 0.00 0.00 3.06
4055 4073 7.613551 ACTTCCTCCGTTCCTAAATATATGT 57.386 36.000 0.00 0.00 0.00 2.29
4056 4074 9.021807 TCTACTTCCTCCGTTCCTAAATATATG 57.978 37.037 0.00 0.00 0.00 1.78
4057 4075 9.597681 TTCTACTTCCTCCGTTCCTAAATATAT 57.402 33.333 0.00 0.00 0.00 0.86
4058 4076 9.075678 CTTCTACTTCCTCCGTTCCTAAATATA 57.924 37.037 0.00 0.00 0.00 0.86
4076 4095 5.827326 AAGCAGGGACTAAACTTCTACTT 57.173 39.130 0.00 0.00 36.02 2.24
4096 4115 8.994429 AGAATGATCACTGACAAGTAGTAAAG 57.006 34.615 0.00 0.00 33.79 1.85
4198 4223 5.923204 AGTTGATCTCAGTCTGTCAAAAGT 58.077 37.500 6.07 0.00 32.93 2.66
4248 4273 7.685481 TGAGTTAATGGACATTCAGACCTTTA 58.315 34.615 0.03 0.00 33.06 1.85
4249 4274 6.542821 TGAGTTAATGGACATTCAGACCTTT 58.457 36.000 0.03 0.00 34.70 3.11
4252 4319 5.940470 AGTTGAGTTAATGGACATTCAGACC 59.060 40.000 0.03 0.00 32.50 3.85
4254 4321 5.939883 CCAGTTGAGTTAATGGACATTCAGA 59.060 40.000 0.03 0.00 34.60 3.27
4272 4710 6.541278 ACATCATGAGATCATTACACCAGTTG 59.459 38.462 0.09 0.00 33.61 3.16
4301 4739 8.561738 TTAGGATTGTAACATGGACTTTTCTC 57.438 34.615 0.00 0.00 0.00 2.87
4302 4740 8.793592 GTTTAGGATTGTAACATGGACTTTTCT 58.206 33.333 0.00 0.00 0.00 2.52
4303 4741 8.793592 AGTTTAGGATTGTAACATGGACTTTTC 58.206 33.333 0.00 0.00 0.00 2.29
4304 4742 8.706322 AGTTTAGGATTGTAACATGGACTTTT 57.294 30.769 0.00 0.00 0.00 2.27
4305 4743 9.802039 TTAGTTTAGGATTGTAACATGGACTTT 57.198 29.630 0.00 0.00 0.00 2.66
4306 4744 9.227777 GTTAGTTTAGGATTGTAACATGGACTT 57.772 33.333 0.00 0.00 0.00 3.01
4307 4745 7.827729 GGTTAGTTTAGGATTGTAACATGGACT 59.172 37.037 0.00 0.00 0.00 3.85
4308 4746 7.608761 TGGTTAGTTTAGGATTGTAACATGGAC 59.391 37.037 0.00 0.00 0.00 4.02
4309 4747 7.608761 GTGGTTAGTTTAGGATTGTAACATGGA 59.391 37.037 0.00 0.00 0.00 3.41
4310 4748 7.413657 CGTGGTTAGTTTAGGATTGTAACATGG 60.414 40.741 0.00 0.00 0.00 3.66
4311 4749 7.118680 ACGTGGTTAGTTTAGGATTGTAACATG 59.881 37.037 0.00 0.00 0.00 3.21
4312 4750 7.118680 CACGTGGTTAGTTTAGGATTGTAACAT 59.881 37.037 7.95 0.00 0.00 2.71
4313 4751 6.424509 CACGTGGTTAGTTTAGGATTGTAACA 59.575 38.462 7.95 0.00 0.00 2.41
4314 4752 6.128472 CCACGTGGTTAGTTTAGGATTGTAAC 60.128 42.308 26.95 0.00 0.00 2.50
4315 4753 5.933463 CCACGTGGTTAGTTTAGGATTGTAA 59.067 40.000 26.95 0.00 0.00 2.41
4316 4754 5.481105 CCACGTGGTTAGTTTAGGATTGTA 58.519 41.667 26.95 0.00 0.00 2.41
4317 4755 4.320870 CCACGTGGTTAGTTTAGGATTGT 58.679 43.478 26.95 0.00 0.00 2.71
4318 4756 4.939509 CCACGTGGTTAGTTTAGGATTG 57.060 45.455 26.95 0.00 0.00 2.67
4332 4770 4.091453 GGTTGAATATCAAACCACGTGG 57.909 45.455 32.83 32.83 38.10 4.94
4339 4777 6.626302 TGAAATTCGGGGTTGAATATCAAAC 58.374 36.000 0.00 0.00 43.10 2.93
4340 4778 6.842437 TGAAATTCGGGGTTGAATATCAAA 57.158 33.333 0.00 0.00 38.22 2.69
4341 4779 6.842437 TTGAAATTCGGGGTTGAATATCAA 57.158 33.333 0.00 0.00 37.59 2.57
4342 4780 6.842437 TTTGAAATTCGGGGTTGAATATCA 57.158 33.333 0.00 0.00 37.59 2.15
4343 4781 6.533723 GGTTTTGAAATTCGGGGTTGAATATC 59.466 38.462 0.00 0.00 37.59 1.63
4344 4782 6.403049 GGTTTTGAAATTCGGGGTTGAATAT 58.597 36.000 0.00 0.00 37.59 1.28
4345 4783 5.565045 CGGTTTTGAAATTCGGGGTTGAATA 60.565 40.000 0.00 0.00 37.59 1.75
4346 4784 4.637276 GGTTTTGAAATTCGGGGTTGAAT 58.363 39.130 0.00 0.00 40.22 2.57
4347 4785 3.491104 CGGTTTTGAAATTCGGGGTTGAA 60.491 43.478 0.00 0.00 0.00 2.69
4348 4786 2.034812 CGGTTTTGAAATTCGGGGTTGA 59.965 45.455 0.00 0.00 0.00 3.18
4349 4787 2.399448 CGGTTTTGAAATTCGGGGTTG 58.601 47.619 0.00 0.00 0.00 3.77
4350 4788 1.341852 CCGGTTTTGAAATTCGGGGTT 59.658 47.619 10.31 0.00 35.46 4.11
4351 4789 0.963225 CCGGTTTTGAAATTCGGGGT 59.037 50.000 10.31 0.00 35.46 4.95
4352 4790 0.963225 ACCGGTTTTGAAATTCGGGG 59.037 50.000 18.63 6.26 39.87 5.73
4353 4791 1.609555 TGACCGGTTTTGAAATTCGGG 59.390 47.619 9.42 12.35 39.87 5.14
4354 4792 3.047093 GTTGACCGGTTTTGAAATTCGG 58.953 45.455 9.42 14.76 40.70 4.30
4355 4793 3.047093 GGTTGACCGGTTTTGAAATTCG 58.953 45.455 9.42 0.00 0.00 3.34
4356 4794 4.316205 AGGTTGACCGGTTTTGAAATTC 57.684 40.909 9.42 0.00 42.08 2.17
4357 4795 4.645588 TGTAGGTTGACCGGTTTTGAAATT 59.354 37.500 9.42 0.00 42.08 1.82
4358 4796 4.037089 GTGTAGGTTGACCGGTTTTGAAAT 59.963 41.667 9.42 0.00 42.08 2.17
4359 4797 3.377798 GTGTAGGTTGACCGGTTTTGAAA 59.622 43.478 9.42 0.00 42.08 2.69
4360 4798 2.944349 GTGTAGGTTGACCGGTTTTGAA 59.056 45.455 9.42 0.00 42.08 2.69
4361 4799 2.563702 GTGTAGGTTGACCGGTTTTGA 58.436 47.619 9.42 0.00 42.08 2.69
4362 4800 1.605232 GGTGTAGGTTGACCGGTTTTG 59.395 52.381 9.42 0.00 42.08 2.44
4363 4801 1.477377 GGGTGTAGGTTGACCGGTTTT 60.477 52.381 9.42 0.00 42.08 2.43
4364 4802 0.109153 GGGTGTAGGTTGACCGGTTT 59.891 55.000 9.42 0.00 42.08 3.27
4365 4803 0.765519 AGGGTGTAGGTTGACCGGTT 60.766 55.000 9.42 0.00 42.08 4.44
4366 4804 1.152183 AGGGTGTAGGTTGACCGGT 60.152 57.895 6.92 6.92 42.08 5.28
4367 4805 1.189524 TGAGGGTGTAGGTTGACCGG 61.190 60.000 0.00 0.00 42.08 5.28
4368 4806 0.682852 TTGAGGGTGTAGGTTGACCG 59.317 55.000 0.00 0.00 42.08 4.79
4369 4807 1.697982 AGTTGAGGGTGTAGGTTGACC 59.302 52.381 0.00 0.00 0.00 4.02
4370 4808 4.382793 GGATAGTTGAGGGTGTAGGTTGAC 60.383 50.000 0.00 0.00 0.00 3.18
4371 4809 3.773119 GGATAGTTGAGGGTGTAGGTTGA 59.227 47.826 0.00 0.00 0.00 3.18
4372 4810 3.517901 TGGATAGTTGAGGGTGTAGGTTG 59.482 47.826 0.00 0.00 0.00 3.77
4373 4811 3.518303 GTGGATAGTTGAGGGTGTAGGTT 59.482 47.826 0.00 0.00 0.00 3.50
4374 4812 3.105283 GTGGATAGTTGAGGGTGTAGGT 58.895 50.000 0.00 0.00 0.00 3.08
4375 4813 3.375699 AGTGGATAGTTGAGGGTGTAGG 58.624 50.000 0.00 0.00 0.00 3.18
4376 4814 4.383118 CCAAGTGGATAGTTGAGGGTGTAG 60.383 50.000 0.00 0.00 39.16 2.74
4377 4815 3.517901 CCAAGTGGATAGTTGAGGGTGTA 59.482 47.826 0.00 0.00 39.16 2.90
4378 4816 2.305927 CCAAGTGGATAGTTGAGGGTGT 59.694 50.000 0.00 0.00 39.16 4.16
4379 4817 2.305927 ACCAAGTGGATAGTTGAGGGTG 59.694 50.000 3.83 0.00 39.16 4.61
4380 4818 2.572104 GACCAAGTGGATAGTTGAGGGT 59.428 50.000 3.83 0.00 39.16 4.34
4381 4819 2.092914 GGACCAAGTGGATAGTTGAGGG 60.093 54.545 3.83 0.00 39.16 4.30
4382 4820 2.571653 TGGACCAAGTGGATAGTTGAGG 59.428 50.000 3.83 0.00 39.16 3.86
4383 4821 3.515502 TCTGGACCAAGTGGATAGTTGAG 59.484 47.826 3.83 0.00 39.16 3.02
4384 4822 3.516586 TCTGGACCAAGTGGATAGTTGA 58.483 45.455 3.83 0.00 39.16 3.18
4385 4823 3.981071 TCTGGACCAAGTGGATAGTTG 57.019 47.619 3.83 0.00 38.94 3.16
4386 4824 4.993705 TTTCTGGACCAAGTGGATAGTT 57.006 40.909 3.83 0.00 38.94 2.24
4387 4825 4.536090 TGATTTCTGGACCAAGTGGATAGT 59.464 41.667 3.83 0.00 38.94 2.12
4388 4826 5.102953 TGATTTCTGGACCAAGTGGATAG 57.897 43.478 3.83 0.00 38.94 2.08
4389 4827 5.253330 GTTGATTTCTGGACCAAGTGGATA 58.747 41.667 3.83 0.00 38.94 2.59
4390 4828 4.082125 GTTGATTTCTGGACCAAGTGGAT 58.918 43.478 3.83 0.00 38.94 3.41
4391 4829 3.486383 GTTGATTTCTGGACCAAGTGGA 58.514 45.455 3.83 0.00 38.94 4.02
4392 4830 2.558359 GGTTGATTTCTGGACCAAGTGG 59.442 50.000 0.00 0.00 42.17 4.00
4393 4831 2.558359 GGGTTGATTTCTGGACCAAGTG 59.442 50.000 0.00 0.00 33.81 3.16
4394 4832 2.447047 AGGGTTGATTTCTGGACCAAGT 59.553 45.455 0.00 0.00 33.81 3.16
4395 4833 3.160679 AGGGTTGATTTCTGGACCAAG 57.839 47.619 0.00 0.00 33.81 3.61
4396 4834 3.655777 AGTAGGGTTGATTTCTGGACCAA 59.344 43.478 0.00 0.00 33.81 3.67
4397 4835 3.256704 AGTAGGGTTGATTTCTGGACCA 58.743 45.455 0.00 0.00 33.81 4.02
4398 4836 3.519913 AGAGTAGGGTTGATTTCTGGACC 59.480 47.826 0.00 0.00 0.00 4.46
4399 4837 4.678309 CGAGAGTAGGGTTGATTTCTGGAC 60.678 50.000 0.00 0.00 0.00 4.02
4400 4838 3.447586 CGAGAGTAGGGTTGATTTCTGGA 59.552 47.826 0.00 0.00 0.00 3.86
4401 4839 3.195825 ACGAGAGTAGGGTTGATTTCTGG 59.804 47.826 0.00 0.00 46.88 3.86
4402 4840 4.457834 ACGAGAGTAGGGTTGATTTCTG 57.542 45.455 0.00 0.00 46.88 3.02
4417 4855 6.292381 CCACTTGACTGAGTTAAAAACGAGAG 60.292 42.308 0.00 0.00 36.23 3.20
4418 4856 5.522460 CCACTTGACTGAGTTAAAAACGAGA 59.478 40.000 0.00 0.00 36.23 4.04
4419 4857 5.293569 ACCACTTGACTGAGTTAAAAACGAG 59.706 40.000 0.00 0.00 36.23 4.18
4420 4858 5.180271 ACCACTTGACTGAGTTAAAAACGA 58.820 37.500 0.00 0.00 36.23 3.85
4421 4859 5.479716 ACCACTTGACTGAGTTAAAAACG 57.520 39.130 0.00 0.00 36.23 3.60
4422 4860 7.810759 TCAAAACCACTTGACTGAGTTAAAAAC 59.189 33.333 0.00 0.00 30.31 2.43
4423 4861 7.887381 TCAAAACCACTTGACTGAGTTAAAAA 58.113 30.769 0.00 0.00 30.31 1.94
4424 4862 7.455641 TCAAAACCACTTGACTGAGTTAAAA 57.544 32.000 0.00 0.00 30.31 1.52
4435 4873 0.745128 ACGCGGTCAAAACCACTTGA 60.745 50.000 12.47 0.00 46.86 3.02
4436 4874 0.099791 AACGCGGTCAAAACCACTTG 59.900 50.000 12.47 0.00 46.86 3.16
4437 4875 0.099791 CAACGCGGTCAAAACCACTT 59.900 50.000 12.47 0.00 46.86 3.16
4438 4876 0.745128 TCAACGCGGTCAAAACCACT 60.745 50.000 12.47 0.00 46.86 4.00
4439 4877 0.590481 GTCAACGCGGTCAAAACCAC 60.590 55.000 12.47 0.00 46.86 4.16
4440 4878 0.745128 AGTCAACGCGGTCAAAACCA 60.745 50.000 12.47 0.00 46.86 3.67
4441 4879 0.316689 CAGTCAACGCGGTCAAAACC 60.317 55.000 12.47 0.00 42.66 3.27
4442 4880 0.928451 GCAGTCAACGCGGTCAAAAC 60.928 55.000 12.47 0.00 0.00 2.43
4443 4881 1.092921 AGCAGTCAACGCGGTCAAAA 61.093 50.000 12.47 0.00 0.00 2.44
4444 4882 1.522806 AGCAGTCAACGCGGTCAAA 60.523 52.632 12.47 0.00 0.00 2.69
4445 4883 2.108157 AGCAGTCAACGCGGTCAA 59.892 55.556 12.47 0.00 0.00 3.18
4446 4884 2.661537 CAGCAGTCAACGCGGTCA 60.662 61.111 12.47 0.00 0.00 4.02
4447 4885 2.355837 TCAGCAGTCAACGCGGTC 60.356 61.111 12.47 0.00 0.00 4.79
4448 4886 1.802337 TAGTCAGCAGTCAACGCGGT 61.802 55.000 12.47 0.00 0.00 5.68
4449 4887 1.073216 CTAGTCAGCAGTCAACGCGG 61.073 60.000 12.47 0.00 0.00 6.46
4450 4888 1.073216 CCTAGTCAGCAGTCAACGCG 61.073 60.000 3.53 3.53 0.00 6.01
4451 4889 1.355066 GCCTAGTCAGCAGTCAACGC 61.355 60.000 0.00 0.00 0.00 4.84
4452 4890 0.038251 TGCCTAGTCAGCAGTCAACG 60.038 55.000 0.00 0.00 34.69 4.10
4453 4891 1.001406 AGTGCCTAGTCAGCAGTCAAC 59.999 52.381 0.00 0.00 39.74 3.18
4454 4892 1.342074 AGTGCCTAGTCAGCAGTCAA 58.658 50.000 0.00 0.00 39.74 3.18
4455 4893 1.342074 AAGTGCCTAGTCAGCAGTCA 58.658 50.000 0.95 0.00 43.03 3.41
4456 4894 2.289072 TGAAAGTGCCTAGTCAGCAGTC 60.289 50.000 0.95 0.00 43.03 3.51
4457 4895 1.694150 TGAAAGTGCCTAGTCAGCAGT 59.306 47.619 0.00 0.00 45.73 4.40
4458 4896 2.462456 TGAAAGTGCCTAGTCAGCAG 57.538 50.000 0.00 0.00 41.87 4.24
4459 4897 2.038952 ACATGAAAGTGCCTAGTCAGCA 59.961 45.455 0.00 0.00 38.08 4.41
4460 4898 2.675348 GACATGAAAGTGCCTAGTCAGC 59.325 50.000 0.00 0.00 0.00 4.26
4461 4899 3.681897 GTGACATGAAAGTGCCTAGTCAG 59.318 47.826 0.00 0.00 35.48 3.51
4462 4900 3.557054 GGTGACATGAAAGTGCCTAGTCA 60.557 47.826 0.00 0.00 32.70 3.41
4463 4901 3.003480 GGTGACATGAAAGTGCCTAGTC 58.997 50.000 0.00 0.00 0.00 2.59
4464 4902 2.290323 GGGTGACATGAAAGTGCCTAGT 60.290 50.000 0.00 0.00 0.00 2.57
4465 4903 2.026822 AGGGTGACATGAAAGTGCCTAG 60.027 50.000 0.00 0.00 0.00 3.02
4466 4904 1.985159 AGGGTGACATGAAAGTGCCTA 59.015 47.619 0.00 0.00 0.00 3.93
4467 4905 0.773644 AGGGTGACATGAAAGTGCCT 59.226 50.000 0.00 0.00 0.00 4.75
4468 4906 1.620822 AAGGGTGACATGAAAGTGCC 58.379 50.000 0.00 0.00 0.00 5.01
4469 4907 3.437049 GTCTAAGGGTGACATGAAAGTGC 59.563 47.826 0.00 0.00 34.80 4.40
4470 4908 4.003648 GGTCTAAGGGTGACATGAAAGTG 58.996 47.826 0.00 0.00 36.26 3.16
4471 4909 3.650942 TGGTCTAAGGGTGACATGAAAGT 59.349 43.478 0.00 0.00 36.26 2.66
4472 4910 4.286297 TGGTCTAAGGGTGACATGAAAG 57.714 45.455 0.00 0.00 36.26 2.62
4473 4911 4.536090 AGATGGTCTAAGGGTGACATGAAA 59.464 41.667 0.00 0.00 36.26 2.69
4474 4912 4.080919 CAGATGGTCTAAGGGTGACATGAA 60.081 45.833 0.00 0.00 36.26 2.57
4475 4913 3.452264 CAGATGGTCTAAGGGTGACATGA 59.548 47.826 0.00 0.00 36.26 3.07
4476 4914 3.432749 CCAGATGGTCTAAGGGTGACATG 60.433 52.174 0.00 0.00 36.26 3.21
4477 4915 2.774234 CCAGATGGTCTAAGGGTGACAT 59.226 50.000 0.00 0.00 36.26 3.06
4478 4916 2.187958 CCAGATGGTCTAAGGGTGACA 58.812 52.381 0.00 0.00 36.26 3.58
4479 4917 1.486726 CCCAGATGGTCTAAGGGTGAC 59.513 57.143 0.00 0.00 34.75 3.67
4480 4918 1.364678 TCCCAGATGGTCTAAGGGTGA 59.635 52.381 0.00 0.00 40.48 4.02
4481 4919 1.879575 TCCCAGATGGTCTAAGGGTG 58.120 55.000 0.00 0.00 40.48 4.61
4482 4920 2.695585 GATCCCAGATGGTCTAAGGGT 58.304 52.381 0.00 0.00 40.48 4.34
4483 4921 1.981495 GGATCCCAGATGGTCTAAGGG 59.019 57.143 0.00 0.00 40.98 3.95
4484 4922 2.694397 TGGATCCCAGATGGTCTAAGG 58.306 52.381 9.90 0.00 34.77 2.69
4485 4923 4.840680 TGTATGGATCCCAGATGGTCTAAG 59.159 45.833 9.90 0.00 36.75 2.18
4486 4924 4.826616 TGTATGGATCCCAGATGGTCTAA 58.173 43.478 9.90 0.00 36.75 2.10
4487 4925 4.485653 TGTATGGATCCCAGATGGTCTA 57.514 45.455 9.90 0.00 36.75 2.59
4488 4926 3.350992 TGTATGGATCCCAGATGGTCT 57.649 47.619 9.90 0.00 36.75 3.85
4489 4927 3.648067 TCTTGTATGGATCCCAGATGGTC 59.352 47.826 9.90 0.00 36.75 4.02
4490 4928 3.668821 TCTTGTATGGATCCCAGATGGT 58.331 45.455 9.90 0.00 36.75 3.55
4491 4929 4.712051 TTCTTGTATGGATCCCAGATGG 57.288 45.455 9.90 0.00 36.75 3.51
4526 4964 3.509184 GCAGAGAAAGAGAGGGCATTTTT 59.491 43.478 0.00 0.00 0.00 1.94
4527 4965 3.087781 GCAGAGAAAGAGAGGGCATTTT 58.912 45.455 0.00 0.00 0.00 1.82
4528 4966 2.308275 AGCAGAGAAAGAGAGGGCATTT 59.692 45.455 0.00 0.00 0.00 2.32
4529 4967 1.914798 AGCAGAGAAAGAGAGGGCATT 59.085 47.619 0.00 0.00 0.00 3.56
4530 4968 1.485895 GAGCAGAGAAAGAGAGGGCAT 59.514 52.381 0.00 0.00 0.00 4.40
4531 4969 0.901124 GAGCAGAGAAAGAGAGGGCA 59.099 55.000 0.00 0.00 0.00 5.36
4532 4970 0.179113 CGAGCAGAGAAAGAGAGGGC 60.179 60.000 0.00 0.00 0.00 5.19
4533 4971 0.459489 CCGAGCAGAGAAAGAGAGGG 59.541 60.000 0.00 0.00 0.00 4.30
4534 4972 0.179113 GCCGAGCAGAGAAAGAGAGG 60.179 60.000 0.00 0.00 0.00 3.69
4535 4973 0.179113 GGCCGAGCAGAGAAAGAGAG 60.179 60.000 0.00 0.00 0.00 3.20
4536 4974 1.608717 GGGCCGAGCAGAGAAAGAGA 61.609 60.000 0.00 0.00 0.00 3.10
4537 4975 1.153469 GGGCCGAGCAGAGAAAGAG 60.153 63.158 0.00 0.00 0.00 2.85
4538 4976 2.660064 GGGGCCGAGCAGAGAAAGA 61.660 63.158 0.00 0.00 0.00 2.52
4539 4977 2.124942 GGGGCCGAGCAGAGAAAG 60.125 66.667 0.00 0.00 0.00 2.62
4540 4978 2.927856 TGGGGCCGAGCAGAGAAA 60.928 61.111 0.00 0.00 0.00 2.52
4541 4979 3.393970 CTGGGGCCGAGCAGAGAA 61.394 66.667 1.48 0.00 0.00 2.87
4556 4994 4.127040 AGAGAGACGGCGCTGCTG 62.127 66.667 18.15 7.65 41.29 4.41
4557 4995 3.821055 GAGAGAGACGGCGCTGCT 61.821 66.667 18.15 14.64 0.00 4.24
4558 4996 3.749735 GAGAGAGAGACGGCGCTGC 62.750 68.421 18.15 9.47 0.00 5.25
4559 4997 2.047151 GAGAGAGAGAGACGGCGCTG 62.047 65.000 16.39 16.39 0.00 5.18
4560 4998 1.817941 GAGAGAGAGAGACGGCGCT 60.818 63.158 6.90 0.00 0.00 5.92
4561 4999 1.772063 GAGAGAGAGAGAGACGGCGC 61.772 65.000 6.90 0.00 0.00 6.53
4562 5000 0.179084 AGAGAGAGAGAGAGACGGCG 60.179 60.000 4.80 4.80 0.00 6.46
4563 5001 1.583054 GAGAGAGAGAGAGAGACGGC 58.417 60.000 0.00 0.00 0.00 5.68
4564 5002 1.136305 ACGAGAGAGAGAGAGAGACGG 59.864 57.143 0.00 0.00 0.00 4.79
4565 5003 2.579207 ACGAGAGAGAGAGAGAGACG 57.421 55.000 0.00 0.00 0.00 4.18
4566 5004 4.124851 AGAACGAGAGAGAGAGAGAGAC 57.875 50.000 0.00 0.00 0.00 3.36
4567 5005 4.819105 AAGAACGAGAGAGAGAGAGAGA 57.181 45.455 0.00 0.00 0.00 3.10
4568 5006 5.696724 GGATAAGAACGAGAGAGAGAGAGAG 59.303 48.000 0.00 0.00 0.00 3.20
4569 5007 5.454187 GGGATAAGAACGAGAGAGAGAGAGA 60.454 48.000 0.00 0.00 0.00 3.10
4570 5008 4.755123 GGGATAAGAACGAGAGAGAGAGAG 59.245 50.000 0.00 0.00 0.00 3.20
4571 5009 4.445162 GGGGATAAGAACGAGAGAGAGAGA 60.445 50.000 0.00 0.00 0.00 3.10
4572 5010 3.818773 GGGGATAAGAACGAGAGAGAGAG 59.181 52.174 0.00 0.00 0.00 3.20
4573 5011 3.460340 AGGGGATAAGAACGAGAGAGAGA 59.540 47.826 0.00 0.00 0.00 3.10
4574 5012 3.568007 CAGGGGATAAGAACGAGAGAGAG 59.432 52.174 0.00 0.00 0.00 3.20
4575 5013 3.556999 CAGGGGATAAGAACGAGAGAGA 58.443 50.000 0.00 0.00 0.00 3.10
4576 5014 2.625790 CCAGGGGATAAGAACGAGAGAG 59.374 54.545 0.00 0.00 0.00 3.20
4577 5015 2.667470 CCAGGGGATAAGAACGAGAGA 58.333 52.381 0.00 0.00 0.00 3.10
4578 5016 1.689273 CCCAGGGGATAAGAACGAGAG 59.311 57.143 0.00 0.00 37.50 3.20
4579 5017 1.289830 TCCCAGGGGATAAGAACGAGA 59.710 52.381 5.33 0.00 39.76 4.04
4580 5018 1.789523 TCCCAGGGGATAAGAACGAG 58.210 55.000 5.33 0.00 39.76 4.18
4591 5029 0.859760 AGAGAGAGAGATCCCAGGGG 59.140 60.000 5.33 0.92 0.00 4.79
4592 5030 2.597455 GAAGAGAGAGAGATCCCAGGG 58.403 57.143 0.00 0.00 0.00 4.45
4593 5031 2.597455 GGAAGAGAGAGAGATCCCAGG 58.403 57.143 0.00 0.00 0.00 4.45
4597 5035 3.578282 GGATTGGGAAGAGAGAGAGATCC 59.422 52.174 0.00 0.00 0.00 3.36
4598 5036 3.578282 GGGATTGGGAAGAGAGAGAGATC 59.422 52.174 0.00 0.00 0.00 2.75
4599 5037 3.586429 GGGATTGGGAAGAGAGAGAGAT 58.414 50.000 0.00 0.00 0.00 2.75
4600 5038 2.688214 CGGGATTGGGAAGAGAGAGAGA 60.688 54.545 0.00 0.00 0.00 3.10
4601 5039 1.686052 CGGGATTGGGAAGAGAGAGAG 59.314 57.143 0.00 0.00 0.00 3.20
4602 5040 1.007238 ACGGGATTGGGAAGAGAGAGA 59.993 52.381 0.00 0.00 0.00 3.10
4603 5041 1.137872 CACGGGATTGGGAAGAGAGAG 59.862 57.143 0.00 0.00 0.00 3.20
4604 5042 1.195115 CACGGGATTGGGAAGAGAGA 58.805 55.000 0.00 0.00 0.00 3.10
4605 5043 1.134670 GTCACGGGATTGGGAAGAGAG 60.135 57.143 0.00 0.00 0.00 3.20
4606 5044 0.902531 GTCACGGGATTGGGAAGAGA 59.097 55.000 0.00 0.00 0.00 3.10
4607 5045 0.107654 GGTCACGGGATTGGGAAGAG 60.108 60.000 0.00 0.00 0.00 2.85
4608 5046 1.895020 CGGTCACGGGATTGGGAAGA 61.895 60.000 0.00 0.00 36.18 2.87
4609 5047 1.449601 CGGTCACGGGATTGGGAAG 60.450 63.158 0.00 0.00 36.18 3.46
4610 5048 2.666207 CGGTCACGGGATTGGGAA 59.334 61.111 0.00 0.00 36.18 3.97
4611 5049 4.090588 GCGGTCACGGGATTGGGA 62.091 66.667 0.00 0.00 41.36 4.37
4631 5069 3.462678 GGACGGAGGCTGGGTCTC 61.463 72.222 12.61 0.00 32.92 3.36


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.