Multiple sequence alignment - TraesCS2B01G610900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G610900 chr2B 100.000 2701 0 0 1 2701 790445384 790442684 0.000000e+00 4988
1 TraesCS2B01G610900 chr2B 93.923 181 10 1 176 355 656593540 656593360 3.430000e-69 272
2 TraesCS2B01G610900 chr2A 86.738 1870 117 72 904 2701 770410064 770411874 0.000000e+00 1958
3 TraesCS2B01G610900 chr2A 88.426 216 22 3 184 397 749748962 749748748 9.600000e-65 257
4 TraesCS2B01G610900 chr2A 89.855 138 5 5 396 530 451825394 451825263 4.620000e-38 169
5 TraesCS2B01G610900 chr2A 87.879 132 11 4 19 149 90575055 90574928 1.680000e-32 150
6 TraesCS2B01G610900 chr2A 75.244 307 40 29 579 855 770409636 770409936 2.200000e-21 113
7 TraesCS2B01G610900 chr2D 86.287 1247 41 64 866 2025 645044178 645045381 0.000000e+00 1236
8 TraesCS2B01G610900 chr2D 86.370 697 46 23 2038 2701 645045630 645046310 0.000000e+00 715
9 TraesCS2B01G610900 chr2D 89.928 139 6 6 396 532 644013385 644013253 3.580000e-39 172
10 TraesCS2B01G610900 chr7D 95.337 193 9 0 1105 1297 319910304 319910112 9.390000e-80 307
11 TraesCS2B01G610900 chr7D 88.745 231 15 3 176 396 102765919 102765690 3.430000e-69 272
12 TraesCS2B01G610900 chr7D 88.182 220 19 3 182 395 94668147 94667929 3.450000e-64 255
13 TraesCS2B01G610900 chr7D 90.370 135 3 5 396 528 85021464 85021590 4.620000e-38 169
14 TraesCS2B01G610900 chr5B 91.228 228 10 2 176 393 188799726 188799499 4.370000e-78 302
15 TraesCS2B01G610900 chr5B 90.476 231 13 1 176 397 203460017 203459787 2.030000e-76 296
16 TraesCS2B01G610900 chr5B 90.179 224 13 1 183 397 222460525 222460748 1.580000e-72 283
17 TraesCS2B01G610900 chr5B 90.299 134 5 4 396 528 635765107 635764981 4.620000e-38 169
18 TraesCS2B01G610900 chr4B 90.129 233 13 2 175 397 9530332 9530564 7.310000e-76 294
19 TraesCS2B01G610900 chr4B 90.583 223 12 1 184 397 570859820 570859598 1.220000e-73 287
20 TraesCS2B01G610900 chr4B 88.839 224 16 1 183 397 570830613 570830390 1.590000e-67 267
21 TraesCS2B01G610900 chr4B 92.857 126 6 3 13 137 9530025 9530148 2.140000e-41 180
22 TraesCS2B01G610900 chr4B 91.111 135 4 4 396 528 476237003 476237131 2.760000e-40 176
23 TraesCS2B01G610900 chr1D 90.171 234 12 3 175 397 209524413 209524646 7.310000e-76 294
24 TraesCS2B01G610900 chr1D 85.135 296 27 8 114 397 352405964 352405674 1.220000e-73 287
25 TraesCS2B01G610900 chr1D 91.111 135 4 4 396 528 426389779 426389651 2.760000e-40 176
26 TraesCS2B01G610900 chr1D 89.630 135 12 2 16 149 360430346 360430479 1.290000e-38 171
27 TraesCS2B01G610900 chr1D 87.879 132 14 2 19 149 192800328 192800198 1.300000e-33 154
28 TraesCS2B01G610900 chr1D 87.970 133 11 4 21 149 320181771 320181902 4.660000e-33 152
29 TraesCS2B01G610900 chr5D 89.744 234 14 2 178 401 407487976 407488209 9.460000e-75 291
30 TraesCS2B01G610900 chr5D 91.045 134 5 3 396 528 59760617 59760490 9.940000e-40 174
31 TraesCS2B01G610900 chr5D 90.370 135 5 4 396 528 98663658 98663530 1.290000e-38 171
32 TraesCS2B01G610900 chr5D 90.698 129 10 2 16 143 369336840 369336967 1.290000e-38 171
33 TraesCS2B01G610900 chrUn 89.655 232 14 2 176 397 331931805 331931574 1.220000e-73 287
34 TraesCS2B01G610900 chrUn 88.034 117 11 3 19 134 340121566 340121452 4.690000e-28 135
35 TraesCS2B01G610900 chr4A 89.655 232 14 2 176 397 653700233 653700464 1.220000e-73 287
36 TraesCS2B01G610900 chr4A 89.231 130 12 2 19 147 585087198 585087326 7.740000e-36 161
37 TraesCS2B01G610900 chr4A 87.407 135 15 2 16 149 585090838 585090971 1.300000e-33 154
38 TraesCS2B01G610900 chr3D 88.362 232 16 3 176 397 559752645 559752415 4.430000e-68 268
39 TraesCS2B01G610900 chr3D 88.636 132 13 2 19 149 41706362 41706232 2.780000e-35 159
40 TraesCS2B01G610900 chr4D 90.299 134 6 3 396 528 84465588 84465461 4.620000e-38 169
41 TraesCS2B01G610900 chr5A 88.034 117 11 3 19 134 74921158 74921272 4.690000e-28 135
42 TraesCS2B01G610900 chr5A 88.034 117 11 3 19 134 476707248 476707362 4.690000e-28 135
43 TraesCS2B01G610900 chr5A 88.034 117 11 3 19 134 688057740 688057626 4.690000e-28 135
44 TraesCS2B01G610900 chr1B 88.034 117 11 3 19 134 422542297 422542183 4.690000e-28 135
45 TraesCS2B01G610900 chr1A 88.034 117 11 3 19 134 15631537 15631423 4.690000e-28 135


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G610900 chr2B 790442684 790445384 2700 True 4988.0 4988 100.0000 1 2701 1 chr2B.!!$R2 2700
1 TraesCS2B01G610900 chr2A 770409636 770411874 2238 False 1035.5 1958 80.9910 579 2701 2 chr2A.!!$F1 2122
2 TraesCS2B01G610900 chr2D 645044178 645046310 2132 False 975.5 1236 86.3285 866 2701 2 chr2D.!!$F1 1835
3 TraesCS2B01G610900 chr4B 9530025 9530564 539 False 237.0 294 91.4930 13 397 2 chr4B.!!$F2 384

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
974 1262 0.030705 TCCCTCCAATCCCTCCTCTG 60.031 60.0 0.0 0.0 0.0 3.35 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2426 3110 0.036388 GTTCCGTTCCATCTCTGGCA 60.036 55.0 0.0 0.0 42.8 4.92 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 4.315588 GACCTTCTCTCCCGTCGA 57.684 61.111 0.00 0.00 0.00 4.20
36 37 2.603776 GGACGGGGTGGAGTCACT 60.604 66.667 0.00 0.00 43.17 3.41
66 67 2.734606 CAGCAACAAAGGAACGACGATA 59.265 45.455 0.00 0.00 0.00 2.92
122 124 0.745468 CGCTAGGGTTAGGAGACACC 59.255 60.000 0.00 0.00 39.35 4.16
124 126 1.959028 GCTAGGGTTAGGAGACACCGT 60.959 57.143 0.00 0.00 44.74 4.83
137 139 6.002704 AGGAGACACCGTACACTTATATAGG 58.997 44.000 0.00 0.00 44.74 2.57
138 140 5.767168 GGAGACACCGTACACTTATATAGGT 59.233 44.000 0.00 0.00 0.00 3.08
143 145 4.891756 ACCGTACACTTATATAGGTGCAGT 59.108 41.667 21.37 12.36 36.84 4.40
172 192 2.596338 TCCGAGTCCGTGACAGCA 60.596 61.111 6.78 0.00 34.60 4.41
257 405 4.953667 CTCCAATAGCATGTAGAAGAGCA 58.046 43.478 0.00 0.00 0.00 4.26
259 407 5.118990 TCCAATAGCATGTAGAAGAGCAAC 58.881 41.667 0.00 0.00 0.00 4.17
292 440 1.202817 GTCCGACTCCTCTTCCACTTC 59.797 57.143 0.00 0.00 0.00 3.01
337 486 2.238646 CTCCACCTAGTGCCAATAACCA 59.761 50.000 0.00 0.00 31.34 3.67
397 555 5.898972 AGGCCCATCTAAAATTTCAGCAATA 59.101 36.000 0.00 0.00 0.00 1.90
398 556 6.556116 AGGCCCATCTAAAATTTCAGCAATAT 59.444 34.615 0.00 0.00 0.00 1.28
399 557 6.647895 GGCCCATCTAAAATTTCAGCAATATG 59.352 38.462 0.00 0.00 0.00 1.78
400 558 7.212274 GCCCATCTAAAATTTCAGCAATATGT 58.788 34.615 0.00 0.00 0.00 2.29
401 559 7.170320 GCCCATCTAAAATTTCAGCAATATGTG 59.830 37.037 0.00 0.00 0.00 3.21
411 569 1.689959 GCAATATGTGCGCCTAATGC 58.310 50.000 4.18 6.82 45.10 3.56
412 570 1.001487 GCAATATGTGCGCCTAATGCA 60.001 47.619 15.15 0.00 45.10 3.96
413 571 2.543445 GCAATATGTGCGCCTAATGCAA 60.543 45.455 15.15 0.00 45.10 4.08
414 572 3.858129 GCAATATGTGCGCCTAATGCAAT 60.858 43.478 15.15 0.00 45.10 3.56
415 573 3.564235 ATATGTGCGCCTAATGCAATG 57.436 42.857 4.18 0.00 45.23 2.82
416 574 1.105457 ATGTGCGCCTAATGCAATGT 58.895 45.000 4.18 0.00 45.23 2.71
417 575 0.170784 TGTGCGCCTAATGCAATGTG 59.829 50.000 4.18 0.00 45.23 3.21
418 576 0.526096 GTGCGCCTAATGCAATGTGG 60.526 55.000 4.18 0.00 45.23 4.17
419 577 1.066257 GCGCCTAATGCAATGTGGG 59.934 57.895 0.00 0.00 41.33 4.61
420 578 1.066257 CGCCTAATGCAATGTGGGC 59.934 57.895 11.38 11.38 41.33 5.36
421 579 1.665264 CGCCTAATGCAATGTGGGCA 61.665 55.000 18.57 0.00 46.66 5.36
422 580 0.536260 GCCTAATGCAATGTGGGCAA 59.464 50.000 15.18 0.00 45.60 4.52
423 581 1.740043 GCCTAATGCAATGTGGGCAAC 60.740 52.381 15.18 0.00 45.60 4.17
436 594 4.337060 GCAACCAAACGCCGGGTC 62.337 66.667 2.18 0.00 36.05 4.46
437 595 2.902846 CAACCAAACGCCGGGTCA 60.903 61.111 2.18 0.00 36.05 4.02
438 596 2.124236 AACCAAACGCCGGGTCAA 60.124 55.556 2.18 0.00 36.05 3.18
439 597 1.753463 AACCAAACGCCGGGTCAAA 60.753 52.632 2.18 0.00 36.05 2.69
440 598 1.321074 AACCAAACGCCGGGTCAAAA 61.321 50.000 2.18 0.00 36.05 2.44
441 599 1.321074 ACCAAACGCCGGGTCAAAAA 61.321 50.000 2.18 0.00 29.34 1.94
468 626 2.691409 GCCTCATGCAACTAGGTACA 57.309 50.000 12.41 0.00 40.77 2.90
469 627 3.199880 GCCTCATGCAACTAGGTACAT 57.800 47.619 12.41 0.00 40.77 2.29
470 628 2.874701 GCCTCATGCAACTAGGTACATG 59.125 50.000 13.99 13.99 40.97 3.21
471 629 2.874701 CCTCATGCAACTAGGTACATGC 59.125 50.000 15.16 7.72 39.75 4.06
475 633 2.016318 TGCAACTAGGTACATGCATGC 58.984 47.619 26.53 11.82 43.32 4.06
476 634 2.016318 GCAACTAGGTACATGCATGCA 58.984 47.619 26.53 25.04 38.63 3.96
477 635 2.032550 GCAACTAGGTACATGCATGCAG 59.967 50.000 26.69 19.15 38.63 4.41
478 636 2.615447 CAACTAGGTACATGCATGCAGG 59.385 50.000 29.33 29.33 0.00 4.85
479 637 1.233019 CTAGGTACATGCATGCAGGC 58.767 55.000 30.68 18.05 0.00 4.85
486 644 3.547247 TGCATGCAGGCAACCAAA 58.453 50.000 25.72 0.00 41.65 3.28
487 645 1.069427 TGCATGCAGGCAACCAAAC 59.931 52.632 25.72 0.00 41.65 2.93
488 646 1.368579 GCATGCAGGCAACCAAACT 59.631 52.632 20.11 0.00 37.17 2.66
489 647 0.602562 GCATGCAGGCAACCAAACTA 59.397 50.000 20.11 0.00 37.17 2.24
490 648 1.205417 GCATGCAGGCAACCAAACTAT 59.795 47.619 20.11 0.00 37.17 2.12
491 649 2.883574 CATGCAGGCAACCAAACTATG 58.116 47.619 0.00 0.00 37.17 2.23
492 650 1.993956 TGCAGGCAACCAAACTATGT 58.006 45.000 0.00 0.00 37.17 2.29
493 651 1.612950 TGCAGGCAACCAAACTATGTG 59.387 47.619 0.00 0.00 37.17 3.21
494 652 1.669795 GCAGGCAACCAAACTATGTGC 60.670 52.381 0.00 0.00 31.91 4.57
495 653 1.612950 CAGGCAACCAAACTATGTGCA 59.387 47.619 0.00 0.00 33.79 4.57
496 654 2.231964 CAGGCAACCAAACTATGTGCAT 59.768 45.455 0.00 0.00 33.79 3.96
497 655 2.493278 AGGCAACCAAACTATGTGCATC 59.507 45.455 0.00 0.00 33.79 3.91
498 656 2.493278 GGCAACCAAACTATGTGCATCT 59.507 45.455 0.00 0.00 33.79 2.90
499 657 3.504863 GCAACCAAACTATGTGCATCTG 58.495 45.455 0.00 0.00 32.71 2.90
500 658 3.674138 GCAACCAAACTATGTGCATCTGG 60.674 47.826 0.00 0.00 32.71 3.86
501 659 2.726821 ACCAAACTATGTGCATCTGGG 58.273 47.619 0.00 0.00 0.00 4.45
502 660 2.041620 ACCAAACTATGTGCATCTGGGT 59.958 45.455 0.00 0.00 0.00 4.51
503 661 3.091545 CCAAACTATGTGCATCTGGGTT 58.908 45.455 0.00 0.00 0.00 4.11
504 662 3.511146 CCAAACTATGTGCATCTGGGTTT 59.489 43.478 0.00 0.00 0.00 3.27
505 663 4.021192 CCAAACTATGTGCATCTGGGTTTT 60.021 41.667 0.00 0.00 0.00 2.43
506 664 5.511202 CCAAACTATGTGCATCTGGGTTTTT 60.511 40.000 0.00 0.00 0.00 1.94
522 680 2.266070 TTTTTGCCTGCATCCCTCG 58.734 52.632 0.00 0.00 0.00 4.63
523 681 0.251121 TTTTTGCCTGCATCCCTCGA 60.251 50.000 0.00 0.00 0.00 4.04
524 682 0.251121 TTTTGCCTGCATCCCTCGAA 60.251 50.000 0.00 0.00 0.00 3.71
525 683 0.960364 TTTGCCTGCATCCCTCGAAC 60.960 55.000 0.00 0.00 0.00 3.95
526 684 2.514824 GCCTGCATCCCTCGAACC 60.515 66.667 0.00 0.00 0.00 3.62
527 685 2.202932 CCTGCATCCCTCGAACCG 60.203 66.667 0.00 0.00 0.00 4.44
528 686 2.721167 CCTGCATCCCTCGAACCGA 61.721 63.158 0.00 0.00 0.00 4.69
529 687 1.519455 CTGCATCCCTCGAACCGAC 60.519 63.158 0.00 0.00 0.00 4.79
530 688 2.202892 GCATCCCTCGAACCGACC 60.203 66.667 0.00 0.00 0.00 4.79
531 689 2.722201 GCATCCCTCGAACCGACCT 61.722 63.158 0.00 0.00 0.00 3.85
532 690 1.898154 CATCCCTCGAACCGACCTT 59.102 57.895 0.00 0.00 0.00 3.50
533 691 0.460284 CATCCCTCGAACCGACCTTG 60.460 60.000 0.00 0.00 0.00 3.61
534 692 1.614241 ATCCCTCGAACCGACCTTGG 61.614 60.000 0.00 0.00 0.00 3.61
535 693 2.434359 CCTCGAACCGACCTTGGC 60.434 66.667 0.00 0.00 0.00 4.52
536 694 2.342279 CTCGAACCGACCTTGGCA 59.658 61.111 0.00 0.00 0.00 4.92
537 695 1.301401 CTCGAACCGACCTTGGCAA 60.301 57.895 0.00 0.00 0.00 4.52
538 696 0.673644 CTCGAACCGACCTTGGCAAT 60.674 55.000 0.00 0.00 0.00 3.56
539 697 0.953471 TCGAACCGACCTTGGCAATG 60.953 55.000 0.00 0.00 0.00 2.82
540 698 1.234615 CGAACCGACCTTGGCAATGT 61.235 55.000 7.92 7.92 0.00 2.71
541 699 1.816074 GAACCGACCTTGGCAATGTA 58.184 50.000 8.17 0.00 0.00 2.29
542 700 2.156098 GAACCGACCTTGGCAATGTAA 58.844 47.619 8.17 0.00 0.00 2.41
543 701 1.530323 ACCGACCTTGGCAATGTAAC 58.470 50.000 8.17 0.00 0.00 2.50
544 702 0.808755 CCGACCTTGGCAATGTAACC 59.191 55.000 8.17 0.00 0.00 2.85
545 703 1.529226 CGACCTTGGCAATGTAACCA 58.471 50.000 8.17 0.00 0.00 3.67
546 704 1.883275 CGACCTTGGCAATGTAACCAA 59.117 47.619 8.17 0.00 43.59 3.67
547 705 2.294791 CGACCTTGGCAATGTAACCAAA 59.705 45.455 8.17 0.00 45.03 3.28
548 706 3.649073 GACCTTGGCAATGTAACCAAAC 58.351 45.455 8.17 0.00 45.03 2.93
549 707 3.034635 ACCTTGGCAATGTAACCAAACA 58.965 40.909 6.35 0.00 45.03 2.83
550 708 3.181470 ACCTTGGCAATGTAACCAAACAC 60.181 43.478 6.35 0.00 45.03 3.32
551 709 2.783828 TGGCAATGTAACCAAACACG 57.216 45.000 0.00 0.00 31.46 4.49
552 710 1.269309 TGGCAATGTAACCAAACACGC 60.269 47.619 0.00 0.00 31.46 5.34
553 711 1.414378 GCAATGTAACCAAACACGCC 58.586 50.000 0.00 0.00 30.75 5.68
554 712 1.933052 GCAATGTAACCAAACACGCCC 60.933 52.381 0.00 0.00 30.75 6.13
555 713 1.611491 CAATGTAACCAAACACGCCCT 59.389 47.619 0.00 0.00 30.75 5.19
556 714 1.989706 ATGTAACCAAACACGCCCTT 58.010 45.000 0.00 0.00 30.75 3.95
557 715 1.310904 TGTAACCAAACACGCCCTTC 58.689 50.000 0.00 0.00 0.00 3.46
558 716 0.594602 GTAACCAAACACGCCCTTCC 59.405 55.000 0.00 0.00 0.00 3.46
559 717 0.183014 TAACCAAACACGCCCTTCCA 59.817 50.000 0.00 0.00 0.00 3.53
560 718 0.469144 AACCAAACACGCCCTTCCAT 60.469 50.000 0.00 0.00 0.00 3.41
561 719 1.178534 ACCAAACACGCCCTTCCATG 61.179 55.000 0.00 0.00 0.00 3.66
562 720 0.893270 CCAAACACGCCCTTCCATGA 60.893 55.000 0.00 0.00 0.00 3.07
563 721 0.958091 CAAACACGCCCTTCCATGAA 59.042 50.000 0.00 0.00 0.00 2.57
564 722 1.068333 CAAACACGCCCTTCCATGAAG 60.068 52.381 0.00 0.00 39.17 3.02
565 723 1.244019 AACACGCCCTTCCATGAAGC 61.244 55.000 0.00 0.00 38.24 3.86
566 724 1.675310 CACGCCCTTCCATGAAGCA 60.675 57.895 0.00 0.00 38.24 3.91
567 725 1.377725 ACGCCCTTCCATGAAGCAG 60.378 57.895 0.00 0.00 38.24 4.24
568 726 2.117156 CGCCCTTCCATGAAGCAGG 61.117 63.158 0.00 0.00 38.24 4.85
569 727 1.304282 GCCCTTCCATGAAGCAGGA 59.696 57.895 0.00 0.00 38.24 3.86
570 728 0.750911 GCCCTTCCATGAAGCAGGAG 60.751 60.000 0.00 0.00 38.24 3.69
571 729 0.750911 CCCTTCCATGAAGCAGGAGC 60.751 60.000 0.00 0.00 38.24 4.70
572 730 0.750911 CCTTCCATGAAGCAGGAGCC 60.751 60.000 0.00 0.00 43.56 4.70
573 731 0.034767 CTTCCATGAAGCAGGAGCCA 60.035 55.000 0.00 0.00 43.56 4.75
574 732 0.322816 TTCCATGAAGCAGGAGCCAC 60.323 55.000 0.00 0.00 43.56 5.01
575 733 1.001764 CCATGAAGCAGGAGCCACA 60.002 57.895 0.00 0.00 43.56 4.17
576 734 0.609957 CCATGAAGCAGGAGCCACAA 60.610 55.000 0.00 0.00 43.56 3.33
577 735 0.809385 CATGAAGCAGGAGCCACAAG 59.191 55.000 0.00 0.00 43.56 3.16
618 776 1.941294 GGATGCATTCTCAGTGCTCAG 59.059 52.381 0.00 0.00 42.92 3.35
625 783 1.986882 TCTCAGTGCTCAGAGTCACA 58.013 50.000 20.41 0.95 35.76 3.58
653 835 1.599518 TGGTTCACCACGTGCCATC 60.600 57.895 10.91 0.00 42.01 3.51
654 836 2.332654 GGTTCACCACGTGCCATCC 61.333 63.158 10.91 4.72 35.64 3.51
655 837 2.033448 TTCACCACGTGCCATCCC 59.967 61.111 10.91 0.00 32.98 3.85
656 838 2.823758 TTCACCACGTGCCATCCCA 61.824 57.895 10.91 0.00 32.98 4.37
657 839 2.045045 CACCACGTGCCATCCCAT 60.045 61.111 10.91 0.00 0.00 4.00
669 851 1.379776 CATCCCATCCCATCCCATCT 58.620 55.000 0.00 0.00 0.00 2.90
687 875 2.512515 CTGCTACGCTGCCCTTCC 60.513 66.667 0.00 0.00 0.00 3.46
691 879 4.077184 TACGCTGCCCTTCCGTGG 62.077 66.667 0.00 0.00 36.51 4.94
701 889 1.410882 CCCTTCCGTGGATCTTCTCTC 59.589 57.143 0.00 0.00 0.00 3.20
708 896 1.407258 GTGGATCTTCTCTCCTCCGTG 59.593 57.143 0.00 0.00 33.69 4.94
710 898 1.679153 GGATCTTCTCTCCTCCGTGTC 59.321 57.143 0.00 0.00 0.00 3.67
726 914 2.481449 CGTGTCCCTTTAATCTCCTCCG 60.481 54.545 0.00 0.00 0.00 4.63
743 931 6.711194 TCTCCTCCGTCTACTGTAATATTCTG 59.289 42.308 0.00 0.00 0.00 3.02
744 932 5.768662 TCCTCCGTCTACTGTAATATTCTGG 59.231 44.000 0.00 0.00 0.00 3.86
745 933 5.768662 CCTCCGTCTACTGTAATATTCTGGA 59.231 44.000 0.00 0.00 0.00 3.86
746 934 6.072397 CCTCCGTCTACTGTAATATTCTGGAG 60.072 46.154 0.00 0.00 38.23 3.86
747 935 6.363065 TCCGTCTACTGTAATATTCTGGAGT 58.637 40.000 0.00 0.00 0.00 3.85
748 936 7.512130 TCCGTCTACTGTAATATTCTGGAGTA 58.488 38.462 0.00 0.00 0.00 2.59
749 937 7.994911 TCCGTCTACTGTAATATTCTGGAGTAA 59.005 37.037 0.00 0.00 0.00 2.24
750 938 8.794553 CCGTCTACTGTAATATTCTGGAGTAAT 58.205 37.037 0.00 0.00 0.00 1.89
765 953 8.185506 TCTGGAGTAATTACTGTACTTGACAA 57.814 34.615 22.68 0.00 37.70 3.18
769 957 9.351570 GGAGTAATTACTGTACTTGACAACTAC 57.648 37.037 22.68 2.49 37.70 2.73
770 958 9.351570 GAGTAATTACTGTACTTGACAACTACC 57.648 37.037 22.68 0.00 37.70 3.18
771 959 9.086758 AGTAATTACTGTACTTGACAACTACCT 57.913 33.333 17.35 0.00 37.70 3.08
801 989 6.399639 AAAAATGAAATACTCACCACGGTT 57.600 33.333 0.00 0.00 36.69 4.44
802 990 5.371115 AAATGAAATACTCACCACGGTTG 57.629 39.130 0.00 0.00 36.69 3.77
803 991 3.478857 TGAAATACTCACCACGGTTGT 57.521 42.857 0.00 0.00 0.00 3.32
822 1020 2.047844 CACGCTCCAGTCCAGTGG 60.048 66.667 1.40 1.40 39.19 4.00
862 1067 2.789842 CATGGCCATGGACTCTGTG 58.210 57.895 34.31 10.35 35.24 3.66
863 1068 0.034767 CATGGCCATGGACTCTGTGT 60.035 55.000 34.31 0.00 35.24 3.72
864 1069 0.254178 ATGGCCATGGACTCTGTGTC 59.746 55.000 20.04 1.35 44.63 3.67
902 1149 1.059913 CTCCCCACCTTCACTTCACT 58.940 55.000 0.00 0.00 0.00 3.41
906 1186 1.417890 CCCACCTTCACTTCACTGTCT 59.582 52.381 0.00 0.00 0.00 3.41
971 1259 1.319799 CCTCCCTCCAATCCCTCCT 59.680 63.158 0.00 0.00 0.00 3.69
972 1260 0.766288 CCTCCCTCCAATCCCTCCTC 60.766 65.000 0.00 0.00 0.00 3.71
973 1261 0.267356 CTCCCTCCAATCCCTCCTCT 59.733 60.000 0.00 0.00 0.00 3.69
974 1262 0.030705 TCCCTCCAATCCCTCCTCTG 60.031 60.000 0.00 0.00 0.00 3.35
987 1275 2.242926 CTCCTCTGGAGTCAACTCACA 58.757 52.381 11.99 6.78 44.25 3.58
991 1279 2.625314 CTCTGGAGTCAACTCACAGACA 59.375 50.000 19.03 6.58 44.60 3.41
992 1280 2.362397 TCTGGAGTCAACTCACAGACAC 59.638 50.000 19.03 2.02 44.60 3.67
993 1281 2.363680 CTGGAGTCAACTCACAGACACT 59.636 50.000 16.99 0.00 44.60 3.55
994 1282 3.562182 TGGAGTCAACTCACAGACACTA 58.438 45.455 11.99 0.00 44.60 2.74
995 1283 3.570125 TGGAGTCAACTCACAGACACTAG 59.430 47.826 11.99 0.00 44.60 2.57
996 1284 3.570559 GAGTCAACTCACAGACACTAGC 58.429 50.000 5.28 0.00 42.42 3.42
997 1285 3.226777 AGTCAACTCACAGACACTAGCT 58.773 45.455 0.00 0.00 37.23 3.32
998 1286 4.399219 AGTCAACTCACAGACACTAGCTA 58.601 43.478 0.00 0.00 37.23 3.32
1258 1552 4.779966 TCGCGCTCGTCCTCTCCT 62.780 66.667 5.56 0.00 36.96 3.69
1390 1684 0.593128 CAACGGCTTCAGGTCCTTTG 59.407 55.000 0.00 0.00 0.00 2.77
1391 1685 0.182775 AACGGCTTCAGGTCCTTTGT 59.817 50.000 0.00 0.00 0.00 2.83
1392 1686 0.182775 ACGGCTTCAGGTCCTTTGTT 59.817 50.000 0.00 0.00 0.00 2.83
1393 1687 0.875059 CGGCTTCAGGTCCTTTGTTC 59.125 55.000 0.00 0.00 0.00 3.18
1394 1688 1.813862 CGGCTTCAGGTCCTTTGTTCA 60.814 52.381 0.00 0.00 0.00 3.18
1395 1689 2.519013 GGCTTCAGGTCCTTTGTTCAT 58.481 47.619 0.00 0.00 0.00 2.57
1396 1690 2.893489 GGCTTCAGGTCCTTTGTTCATT 59.107 45.455 0.00 0.00 0.00 2.57
1397 1691 3.057245 GGCTTCAGGTCCTTTGTTCATTC 60.057 47.826 0.00 0.00 0.00 2.67
1402 1696 3.507622 CAGGTCCTTTGTTCATTCCTTCC 59.492 47.826 0.00 0.00 0.00 3.46
1412 1706 6.639632 TGTTCATTCCTTCCTTCTTTCTTG 57.360 37.500 0.00 0.00 0.00 3.02
1441 1760 3.710326 TCGATTTCGATTCGATCTGGT 57.290 42.857 9.96 0.00 44.22 4.00
1589 1921 3.009115 GTGCCCTACCAGGAGCCA 61.009 66.667 0.00 0.00 37.67 4.75
1704 2036 0.689412 AGTCCTCTGCTTCTAGCCCC 60.689 60.000 0.00 0.00 41.51 5.80
1764 2125 3.099141 CTCCTCCTCTCTGCTTCTTCTT 58.901 50.000 0.00 0.00 0.00 2.52
1765 2126 3.096092 TCCTCCTCTCTGCTTCTTCTTC 58.904 50.000 0.00 0.00 0.00 2.87
1766 2127 3.099141 CCTCCTCTCTGCTTCTTCTTCT 58.901 50.000 0.00 0.00 0.00 2.85
1767 2128 3.515104 CCTCCTCTCTGCTTCTTCTTCTT 59.485 47.826 0.00 0.00 0.00 2.52
1768 2129 4.381932 CCTCCTCTCTGCTTCTTCTTCTTC 60.382 50.000 0.00 0.00 0.00 2.87
1769 2130 4.415596 TCCTCTCTGCTTCTTCTTCTTCT 58.584 43.478 0.00 0.00 0.00 2.85
1770 2131 4.837860 TCCTCTCTGCTTCTTCTTCTTCTT 59.162 41.667 0.00 0.00 0.00 2.52
1771 2132 5.047377 TCCTCTCTGCTTCTTCTTCTTCTTC 60.047 44.000 0.00 0.00 0.00 2.87
1775 2136 6.267471 TCTCTGCTTCTTCTTCTTCTTCTTCT 59.733 38.462 0.00 0.00 0.00 2.85
1778 2139 6.825610 TGCTTCTTCTTCTTCTTCTTCTTCT 58.174 36.000 0.00 0.00 0.00 2.85
1779 2140 7.278875 TGCTTCTTCTTCTTCTTCTTCTTCTT 58.721 34.615 0.00 0.00 0.00 2.52
1780 2141 7.440856 TGCTTCTTCTTCTTCTTCTTCTTCTTC 59.559 37.037 0.00 0.00 0.00 2.87
1782 2143 8.885494 TTCTTCTTCTTCTTCTTCTTCTTCAG 57.115 34.615 0.00 0.00 0.00 3.02
1783 2144 7.441017 TCTTCTTCTTCTTCTTCTTCTTCAGG 58.559 38.462 0.00 0.00 0.00 3.86
1785 2146 7.552050 TCTTCTTCTTCTTCTTCTTCAGGAT 57.448 36.000 0.00 0.00 0.00 3.24
1792 2163 9.930693 TTCTTCTTCTTCTTCAGGATTAGTAAC 57.069 33.333 0.00 0.00 0.00 2.50
1797 2168 6.273825 TCTTCTTCAGGATTAGTAACATCGC 58.726 40.000 0.00 0.00 0.00 4.58
1831 2207 2.095059 GTGTTCCACCATTAGCAAGCAG 60.095 50.000 0.00 0.00 0.00 4.24
1832 2208 1.135286 GTTCCACCATTAGCAAGCAGC 60.135 52.381 0.00 0.00 46.19 5.25
1852 2239 2.162408 GCACCAAAGAATGTCCTACAGC 59.838 50.000 0.00 0.00 0.00 4.40
1853 2240 3.411446 CACCAAAGAATGTCCTACAGCA 58.589 45.455 0.00 0.00 0.00 4.41
1854 2241 3.438087 CACCAAAGAATGTCCTACAGCAG 59.562 47.826 0.00 0.00 0.00 4.24
1855 2242 2.421424 CCAAAGAATGTCCTACAGCAGC 59.579 50.000 0.00 0.00 0.00 5.25
1856 2243 3.076621 CAAAGAATGTCCTACAGCAGCA 58.923 45.455 0.00 0.00 0.00 4.41
1857 2244 2.393271 AGAATGTCCTACAGCAGCAC 57.607 50.000 0.00 0.00 0.00 4.40
1858 2245 1.625315 AGAATGTCCTACAGCAGCACA 59.375 47.619 0.00 0.00 0.00 4.57
1859 2246 2.038952 AGAATGTCCTACAGCAGCACAA 59.961 45.455 0.00 0.00 0.00 3.33
1877 2281 2.302445 ACAAGAGTGAGATCTGCTTGCT 59.698 45.455 17.42 3.56 39.51 3.91
1878 2282 3.244491 ACAAGAGTGAGATCTGCTTGCTT 60.244 43.478 17.42 7.57 39.51 3.91
1879 2283 2.975266 AGAGTGAGATCTGCTTGCTTG 58.025 47.619 0.00 0.00 0.00 4.01
1880 2284 1.397692 GAGTGAGATCTGCTTGCTTGC 59.602 52.381 0.00 0.00 0.00 4.01
1921 2325 7.390440 TCATTAATGTCAAAGATCTTCGTTGGT 59.610 33.333 14.97 0.00 36.68 3.67
1922 2326 5.362556 AATGTCAAAGATCTTCGTTGGTG 57.637 39.130 8.78 2.22 36.68 4.17
1923 2327 3.804036 TGTCAAAGATCTTCGTTGGTGT 58.196 40.909 8.78 0.00 36.68 4.16
1924 2328 3.807622 TGTCAAAGATCTTCGTTGGTGTC 59.192 43.478 8.78 0.99 36.68 3.67
1925 2329 3.807622 GTCAAAGATCTTCGTTGGTGTCA 59.192 43.478 8.78 0.00 36.68 3.58
1926 2330 4.452455 GTCAAAGATCTTCGTTGGTGTCAT 59.548 41.667 8.78 0.00 36.68 3.06
1927 2331 4.452114 TCAAAGATCTTCGTTGGTGTCATG 59.548 41.667 8.78 0.00 36.68 3.07
1928 2332 2.350522 AGATCTTCGTTGGTGTCATGC 58.649 47.619 0.00 0.00 0.00 4.06
1929 2333 2.027745 AGATCTTCGTTGGTGTCATGCT 60.028 45.455 0.00 0.00 0.00 3.79
1964 2378 3.205784 ACTCTGCTTTGCTTTCACTCT 57.794 42.857 0.00 0.00 0.00 3.24
1966 2380 2.224606 TCTGCTTTGCTTTCACTCTGG 58.775 47.619 0.00 0.00 0.00 3.86
1968 2382 0.038801 GCTTTGCTTTCACTCTGGCC 60.039 55.000 0.00 0.00 0.00 5.36
1969 2383 1.613836 CTTTGCTTTCACTCTGGCCT 58.386 50.000 3.32 0.00 0.00 5.19
1971 2385 2.949177 TTGCTTTCACTCTGGCCTAA 57.051 45.000 3.32 0.00 0.00 2.69
1972 2386 3.439857 TTGCTTTCACTCTGGCCTAAT 57.560 42.857 3.32 0.00 0.00 1.73
1973 2387 2.991250 TGCTTTCACTCTGGCCTAATC 58.009 47.619 3.32 0.00 0.00 1.75
1974 2388 2.305635 TGCTTTCACTCTGGCCTAATCA 59.694 45.455 3.32 0.00 0.00 2.57
1975 2389 3.054139 TGCTTTCACTCTGGCCTAATCAT 60.054 43.478 3.32 0.00 0.00 2.45
1976 2390 3.563390 GCTTTCACTCTGGCCTAATCATC 59.437 47.826 3.32 0.00 0.00 2.92
1977 2391 4.774124 CTTTCACTCTGGCCTAATCATCA 58.226 43.478 3.32 0.00 0.00 3.07
2004 2418 3.326836 TCATCATAACGCAACTGTCCA 57.673 42.857 0.00 0.00 0.00 4.02
2006 2420 3.871006 TCATCATAACGCAACTGTCCATC 59.129 43.478 0.00 0.00 0.00 3.51
2029 2443 3.064271 TCAATCACATCGCATCACACATG 59.936 43.478 0.00 0.00 0.00 3.21
2030 2444 0.728542 TCACATCGCATCACACATGC 59.271 50.000 0.00 0.00 41.35 4.06
2031 2445 0.448593 CACATCGCATCACACATGCA 59.551 50.000 7.32 0.00 44.75 3.96
2032 2446 0.448990 ACATCGCATCACACATGCAC 59.551 50.000 7.32 0.00 44.75 4.57
2035 2449 1.643880 TCGCATCACACATGCACTAG 58.356 50.000 7.32 0.00 44.75 2.57
2036 2450 0.027194 CGCATCACACATGCACTAGC 59.973 55.000 7.32 0.00 44.75 3.42
2057 2709 4.100035 AGCAGTCTAGCAGTATAATGTGCA 59.900 41.667 11.97 0.00 42.47 4.57
2139 2810 6.527057 TCTAAGAGTACTAACAAGGAAGCC 57.473 41.667 0.00 0.00 0.00 4.35
2186 2857 7.370383 TGCATTCAGACAAGTTCCTTTTATTC 58.630 34.615 0.00 0.00 0.00 1.75
2192 2863 4.416516 ACAAGTTCCTTTTATTCCCCCTG 58.583 43.478 0.00 0.00 0.00 4.45
2199 2870 3.442625 CCTTTTATTCCCCCTGTCGAAAC 59.557 47.826 0.00 0.00 0.00 2.78
2203 2874 0.109723 TTCCCCCTGTCGAAACCAAG 59.890 55.000 0.00 0.00 0.00 3.61
2204 2875 0.765135 TCCCCCTGTCGAAACCAAGA 60.765 55.000 0.00 0.00 0.00 3.02
2205 2876 0.328258 CCCCCTGTCGAAACCAAGAT 59.672 55.000 0.00 0.00 0.00 2.40
2206 2877 1.557832 CCCCCTGTCGAAACCAAGATA 59.442 52.381 0.00 0.00 0.00 1.98
2207 2878 2.629051 CCCCTGTCGAAACCAAGATAC 58.371 52.381 0.00 0.00 0.00 2.24
2255 2927 4.226761 GTTGTTACAGCTTGCAATGGTAC 58.773 43.478 0.00 0.05 0.00 3.34
2256 2928 2.482336 TGTTACAGCTTGCAATGGTACG 59.518 45.455 0.00 0.00 0.00 3.67
2257 2929 1.083489 TACAGCTTGCAATGGTACGC 58.917 50.000 0.00 0.00 0.00 4.42
2351 3023 7.667219 TGGCTCAAATCTCTAGTGAAAGAAAAT 59.333 33.333 0.00 0.00 0.00 1.82
2401 3077 0.753848 GCGGGGAAGAGAGCTCTAGT 60.754 60.000 18.25 7.35 39.39 2.57
2429 3113 4.432741 GAGCCCCAACTCCCTGCC 62.433 72.222 0.00 0.00 0.00 4.85
2436 3120 0.107312 CCAACTCCCTGCCAGAGATG 60.107 60.000 0.00 0.91 34.79 2.90
2437 3121 0.107312 CAACTCCCTGCCAGAGATGG 60.107 60.000 0.00 0.00 35.27 3.51
2438 3122 0.252881 AACTCCCTGCCAGAGATGGA 60.253 55.000 0.00 0.00 35.27 3.41
2439 3123 0.252881 ACTCCCTGCCAGAGATGGAA 60.253 55.000 0.00 0.00 35.27 3.53
2440 3124 0.179936 CTCCCTGCCAGAGATGGAAC 59.820 60.000 0.00 0.00 32.86 3.62
2497 3195 1.002366 GGTGCTGATAGCGTTCACAG 58.998 55.000 0.00 0.00 46.26 3.66
2528 3230 3.382832 ACGCGTGGAGGAAGAGGG 61.383 66.667 12.93 0.00 0.00 4.30
2544 3246 2.469516 GGGTTATCACGCGGCCTTG 61.470 63.158 12.47 0.00 0.00 3.61
2604 3306 1.919240 TGAACTTCTCCTCGGCTACA 58.081 50.000 0.00 0.00 0.00 2.74
2675 3377 6.195244 GCATATGTGTTTTCGCAAGTTGATAG 59.805 38.462 7.16 0.00 43.76 2.08
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 1.801983 GTCGACGGGAGAGAAGGTC 59.198 63.158 0.00 0.00 0.00 3.85
1 2 2.039405 CGTCGACGGGAGAGAAGGT 61.039 63.158 29.70 0.00 35.37 3.50
2 3 2.792599 CGTCGACGGGAGAGAAGG 59.207 66.667 29.70 0.00 35.37 3.46
16 17 3.756727 GACTCCACCCCGTCCGTC 61.757 72.222 0.00 0.00 0.00 4.79
17 18 4.608774 TGACTCCACCCCGTCCGT 62.609 66.667 0.00 0.00 0.00 4.69
26 27 4.314440 TGCCGCCAGTGACTCCAC 62.314 66.667 0.00 0.00 43.50 4.02
100 101 1.041447 GTCTCCTAACCCTAGCGCCA 61.041 60.000 2.29 0.00 0.00 5.69
122 124 5.145059 CGACTGCACCTATATAAGTGTACG 58.855 45.833 12.09 5.97 36.35 3.67
124 126 4.319984 CGCGACTGCACCTATATAAGTGTA 60.320 45.833 0.00 7.53 42.97 2.90
253 401 3.181453 GGACCTCCTTATAAGGGTTGCTC 60.181 52.174 27.65 15.80 46.47 4.26
257 405 3.036819 GTCGGACCTCCTTATAAGGGTT 58.963 50.000 27.65 14.29 46.47 4.11
259 407 2.892215 GAGTCGGACCTCCTTATAAGGG 59.108 54.545 27.65 18.78 46.47 3.95
276 424 0.533032 CCGGAAGTGGAAGAGGAGTC 59.467 60.000 0.00 0.00 0.00 3.36
292 440 0.035725 GAAGTTTAGTCCCACCCCGG 60.036 60.000 0.00 0.00 0.00 5.73
337 486 4.026052 CAATTTCTCTAAGGGCCCATGTT 58.974 43.478 27.56 12.81 0.00 2.71
403 561 0.536260 TTGCCCACATTGCATTAGGC 59.464 50.000 6.76 6.76 45.13 3.93
404 562 1.134729 GGTTGCCCACATTGCATTAGG 60.135 52.381 0.00 0.00 38.76 2.69
405 563 1.549620 TGGTTGCCCACATTGCATTAG 59.450 47.619 0.00 0.00 38.76 1.73
406 564 1.637338 TGGTTGCCCACATTGCATTA 58.363 45.000 0.00 0.00 38.76 1.90
407 565 0.763652 TTGGTTGCCCACATTGCATT 59.236 45.000 0.00 0.00 41.67 3.56
408 566 0.763652 TTTGGTTGCCCACATTGCAT 59.236 45.000 0.00 0.00 41.67 3.96
409 567 0.179062 GTTTGGTTGCCCACATTGCA 60.179 50.000 0.00 0.00 41.67 4.08
410 568 1.220817 CGTTTGGTTGCCCACATTGC 61.221 55.000 0.00 0.00 41.67 3.56
411 569 1.220817 GCGTTTGGTTGCCCACATTG 61.221 55.000 0.00 0.00 41.67 2.82
412 570 1.068921 GCGTTTGGTTGCCCACATT 59.931 52.632 0.00 0.00 41.67 2.71
413 571 2.733945 GCGTTTGGTTGCCCACAT 59.266 55.556 0.00 0.00 41.67 3.21
414 572 3.532155 GGCGTTTGGTTGCCCACA 61.532 61.111 0.00 0.00 45.73 4.17
419 577 4.337060 GACCCGGCGTTTGGTTGC 62.337 66.667 6.01 0.00 34.20 4.17
420 578 2.005960 TTTGACCCGGCGTTTGGTTG 62.006 55.000 6.01 0.00 34.20 3.77
421 579 1.321074 TTTTGACCCGGCGTTTGGTT 61.321 50.000 6.01 0.00 34.20 3.67
422 580 1.321074 TTTTTGACCCGGCGTTTGGT 61.321 50.000 6.01 6.00 37.64 3.67
423 581 1.437986 TTTTTGACCCGGCGTTTGG 59.562 52.632 6.01 2.01 0.00 3.28
449 607 2.691409 TGTACCTAGTTGCATGAGGC 57.309 50.000 0.00 0.00 45.13 4.70
450 608 2.874701 GCATGTACCTAGTTGCATGAGG 59.125 50.000 19.95 7.36 40.61 3.86
451 609 3.534554 TGCATGTACCTAGTTGCATGAG 58.465 45.455 19.95 0.00 39.98 2.90
452 610 3.625649 TGCATGTACCTAGTTGCATGA 57.374 42.857 19.95 4.88 39.98 3.07
456 614 2.016318 TGCATGCATGTACCTAGTTGC 58.984 47.619 26.79 11.36 35.67 4.17
457 615 2.615447 CCTGCATGCATGTACCTAGTTG 59.385 50.000 26.79 9.44 0.00 3.16
458 616 2.923121 CCTGCATGCATGTACCTAGTT 58.077 47.619 26.79 0.00 0.00 2.24
459 617 1.475751 GCCTGCATGCATGTACCTAGT 60.476 52.381 26.79 0.00 0.00 2.57
460 618 1.233019 GCCTGCATGCATGTACCTAG 58.767 55.000 26.79 16.30 0.00 3.02
461 619 0.545646 TGCCTGCATGCATGTACCTA 59.454 50.000 26.79 9.42 36.04 3.08
462 620 0.323633 TTGCCTGCATGCATGTACCT 60.324 50.000 26.79 0.00 41.70 3.08
463 621 0.179129 GTTGCCTGCATGCATGTACC 60.179 55.000 26.79 14.62 41.70 3.34
464 622 0.179129 GGTTGCCTGCATGCATGTAC 60.179 55.000 26.79 18.67 41.70 2.90
465 623 0.611340 TGGTTGCCTGCATGCATGTA 60.611 50.000 26.79 21.99 41.70 2.29
466 624 1.473497 TTGGTTGCCTGCATGCATGT 61.473 50.000 26.79 0.00 41.70 3.21
467 625 0.320858 TTTGGTTGCCTGCATGCATG 60.321 50.000 22.97 22.70 41.70 4.06
468 626 0.320946 GTTTGGTTGCCTGCATGCAT 60.321 50.000 22.97 0.00 41.70 3.96
469 627 1.069427 GTTTGGTTGCCTGCATGCA 59.931 52.632 21.29 21.29 40.07 3.96
470 628 0.602562 TAGTTTGGTTGCCTGCATGC 59.397 50.000 11.82 11.82 0.00 4.06
471 629 2.231964 ACATAGTTTGGTTGCCTGCATG 59.768 45.455 0.00 0.00 0.00 4.06
472 630 2.231964 CACATAGTTTGGTTGCCTGCAT 59.768 45.455 0.00 0.00 0.00 3.96
473 631 1.612950 CACATAGTTTGGTTGCCTGCA 59.387 47.619 0.00 0.00 0.00 4.41
474 632 1.669795 GCACATAGTTTGGTTGCCTGC 60.670 52.381 0.00 0.00 0.00 4.85
475 633 1.612950 TGCACATAGTTTGGTTGCCTG 59.387 47.619 0.00 0.00 0.00 4.85
476 634 1.993956 TGCACATAGTTTGGTTGCCT 58.006 45.000 0.00 0.00 0.00 4.75
477 635 2.493278 AGATGCACATAGTTTGGTTGCC 59.507 45.455 0.00 0.00 0.00 4.52
478 636 3.504863 CAGATGCACATAGTTTGGTTGC 58.495 45.455 0.00 0.00 0.00 4.17
479 637 3.119388 CCCAGATGCACATAGTTTGGTTG 60.119 47.826 0.00 0.00 0.00 3.77
480 638 3.091545 CCCAGATGCACATAGTTTGGTT 58.908 45.455 0.00 0.00 0.00 3.67
481 639 2.041620 ACCCAGATGCACATAGTTTGGT 59.958 45.455 0.00 0.00 0.00 3.67
482 640 2.726821 ACCCAGATGCACATAGTTTGG 58.273 47.619 0.00 0.00 0.00 3.28
483 641 4.789012 AAACCCAGATGCACATAGTTTG 57.211 40.909 0.00 0.00 0.00 2.93
484 642 5.806654 AAAAACCCAGATGCACATAGTTT 57.193 34.783 0.00 0.00 0.00 2.66
504 662 0.251121 TCGAGGGATGCAGGCAAAAA 60.251 50.000 0.00 0.00 0.00 1.94
505 663 0.251121 TTCGAGGGATGCAGGCAAAA 60.251 50.000 0.00 0.00 0.00 2.44
506 664 0.960364 GTTCGAGGGATGCAGGCAAA 60.960 55.000 0.00 0.00 0.00 3.68
507 665 1.377202 GTTCGAGGGATGCAGGCAA 60.377 57.895 0.00 0.00 0.00 4.52
508 666 2.268920 GTTCGAGGGATGCAGGCA 59.731 61.111 0.00 0.00 0.00 4.75
509 667 2.514824 GGTTCGAGGGATGCAGGC 60.515 66.667 0.00 0.00 0.00 4.85
510 668 2.202932 CGGTTCGAGGGATGCAGG 60.203 66.667 0.00 0.00 0.00 4.85
511 669 1.519455 GTCGGTTCGAGGGATGCAG 60.519 63.158 0.00 0.00 36.23 4.41
512 670 2.577059 GTCGGTTCGAGGGATGCA 59.423 61.111 0.00 0.00 36.23 3.96
513 671 2.202892 GGTCGGTTCGAGGGATGC 60.203 66.667 0.00 0.00 36.23 3.91
514 672 0.460284 CAAGGTCGGTTCGAGGGATG 60.460 60.000 0.00 0.00 36.23 3.51
515 673 1.614241 CCAAGGTCGGTTCGAGGGAT 61.614 60.000 0.00 0.00 36.23 3.85
516 674 2.280552 CCAAGGTCGGTTCGAGGGA 61.281 63.158 0.00 0.00 36.23 4.20
517 675 2.264794 CCAAGGTCGGTTCGAGGG 59.735 66.667 0.00 0.00 36.23 4.30
518 676 2.434359 GCCAAGGTCGGTTCGAGG 60.434 66.667 0.00 0.00 36.23 4.63
519 677 0.673644 ATTGCCAAGGTCGGTTCGAG 60.674 55.000 0.00 0.00 36.23 4.04
520 678 0.953471 CATTGCCAAGGTCGGTTCGA 60.953 55.000 0.00 0.00 0.00 3.71
521 679 1.234615 ACATTGCCAAGGTCGGTTCG 61.235 55.000 0.00 0.00 0.00 3.95
522 680 1.816074 TACATTGCCAAGGTCGGTTC 58.184 50.000 0.00 0.00 0.00 3.62
523 681 1.883926 GTTACATTGCCAAGGTCGGTT 59.116 47.619 0.00 0.00 0.00 4.44
524 682 1.530323 GTTACATTGCCAAGGTCGGT 58.470 50.000 0.00 0.00 0.00 4.69
525 683 0.808755 GGTTACATTGCCAAGGTCGG 59.191 55.000 0.00 0.00 0.00 4.79
526 684 1.529226 TGGTTACATTGCCAAGGTCG 58.471 50.000 0.00 0.00 0.00 4.79
527 685 3.068873 TGTTTGGTTACATTGCCAAGGTC 59.931 43.478 0.00 0.00 44.43 3.85
528 686 3.034635 TGTTTGGTTACATTGCCAAGGT 58.965 40.909 0.00 0.00 44.43 3.50
529 687 3.389221 GTGTTTGGTTACATTGCCAAGG 58.611 45.455 0.00 0.00 44.43 3.61
530 688 3.049206 CGTGTTTGGTTACATTGCCAAG 58.951 45.455 0.00 0.00 44.43 3.61
531 689 2.799917 GCGTGTTTGGTTACATTGCCAA 60.800 45.455 0.00 0.00 42.38 4.52
532 690 1.269309 GCGTGTTTGGTTACATTGCCA 60.269 47.619 0.00 0.00 0.00 4.92
533 691 1.414378 GCGTGTTTGGTTACATTGCC 58.586 50.000 0.00 0.00 0.00 4.52
534 692 1.414378 GGCGTGTTTGGTTACATTGC 58.586 50.000 0.00 0.00 33.88 3.56
535 693 1.611491 AGGGCGTGTTTGGTTACATTG 59.389 47.619 0.00 0.00 0.00 2.82
536 694 1.989706 AGGGCGTGTTTGGTTACATT 58.010 45.000 0.00 0.00 0.00 2.71
537 695 1.883926 GAAGGGCGTGTTTGGTTACAT 59.116 47.619 0.00 0.00 0.00 2.29
538 696 1.310904 GAAGGGCGTGTTTGGTTACA 58.689 50.000 0.00 0.00 0.00 2.41
539 697 0.594602 GGAAGGGCGTGTTTGGTTAC 59.405 55.000 0.00 0.00 0.00 2.50
540 698 0.183014 TGGAAGGGCGTGTTTGGTTA 59.817 50.000 0.00 0.00 0.00 2.85
541 699 0.469144 ATGGAAGGGCGTGTTTGGTT 60.469 50.000 0.00 0.00 0.00 3.67
542 700 1.152830 ATGGAAGGGCGTGTTTGGT 59.847 52.632 0.00 0.00 0.00 3.67
543 701 0.893270 TCATGGAAGGGCGTGTTTGG 60.893 55.000 0.00 0.00 0.00 3.28
544 702 0.958091 TTCATGGAAGGGCGTGTTTG 59.042 50.000 0.00 0.00 0.00 2.93
545 703 1.247567 CTTCATGGAAGGGCGTGTTT 58.752 50.000 0.00 0.00 36.16 2.83
546 704 1.244019 GCTTCATGGAAGGGCGTGTT 61.244 55.000 7.97 0.00 39.76 3.32
547 705 1.675641 GCTTCATGGAAGGGCGTGT 60.676 57.895 7.97 0.00 39.76 4.49
548 706 1.651240 CTGCTTCATGGAAGGGCGTG 61.651 60.000 7.97 0.00 39.76 5.34
549 707 1.377725 CTGCTTCATGGAAGGGCGT 60.378 57.895 7.97 0.00 39.76 5.68
550 708 2.117156 CCTGCTTCATGGAAGGGCG 61.117 63.158 7.97 0.00 39.76 6.13
551 709 0.750911 CTCCTGCTTCATGGAAGGGC 60.751 60.000 7.97 0.00 39.76 5.19
552 710 0.750911 GCTCCTGCTTCATGGAAGGG 60.751 60.000 7.97 2.28 39.76 3.95
553 711 0.750911 GGCTCCTGCTTCATGGAAGG 60.751 60.000 7.97 0.00 39.76 3.46
554 712 0.034767 TGGCTCCTGCTTCATGGAAG 60.035 55.000 1.67 1.67 42.03 3.46
555 713 0.322816 GTGGCTCCTGCTTCATGGAA 60.323 55.000 0.00 0.00 39.59 3.53
556 714 1.300963 GTGGCTCCTGCTTCATGGA 59.699 57.895 0.00 0.00 39.59 3.41
557 715 0.609957 TTGTGGCTCCTGCTTCATGG 60.610 55.000 0.00 0.00 39.59 3.66
558 716 0.809385 CTTGTGGCTCCTGCTTCATG 59.191 55.000 0.00 0.00 39.59 3.07
559 717 0.964358 GCTTGTGGCTCCTGCTTCAT 60.964 55.000 0.00 0.00 39.59 2.57
560 718 1.601759 GCTTGTGGCTCCTGCTTCA 60.602 57.895 0.00 0.00 39.59 3.02
561 719 2.684843 CGCTTGTGGCTCCTGCTTC 61.685 63.158 0.00 0.00 39.59 3.86
562 720 2.670934 CGCTTGTGGCTCCTGCTT 60.671 61.111 0.00 0.00 39.59 3.91
563 721 3.890936 GACGCTTGTGGCTCCTGCT 62.891 63.158 0.00 0.00 39.59 4.24
564 722 3.426568 GACGCTTGTGGCTCCTGC 61.427 66.667 0.00 0.00 39.13 4.85
565 723 2.743928 GGACGCTTGTGGCTCCTG 60.744 66.667 0.00 0.00 39.13 3.86
566 724 3.241530 TGGACGCTTGTGGCTCCT 61.242 61.111 0.00 0.00 38.32 3.69
567 725 3.050275 GTGGACGCTTGTGGCTCC 61.050 66.667 0.00 0.00 38.13 4.70
568 726 2.031163 AGTGGACGCTTGTGGCTC 59.969 61.111 0.00 0.00 39.13 4.70
569 727 1.754380 TACAGTGGACGCTTGTGGCT 61.754 55.000 0.00 0.00 39.13 4.75
570 728 1.301401 TACAGTGGACGCTTGTGGC 60.301 57.895 0.00 0.00 37.64 5.01
571 729 0.249699 TGTACAGTGGACGCTTGTGG 60.250 55.000 0.00 0.00 0.00 4.17
572 730 0.859232 GTGTACAGTGGACGCTTGTG 59.141 55.000 11.99 0.00 0.00 3.33
573 731 0.462375 TGTGTACAGTGGACGCTTGT 59.538 50.000 19.57 0.00 0.00 3.16
574 732 1.460743 CATGTGTACAGTGGACGCTTG 59.539 52.381 19.57 18.52 0.00 4.01
575 733 1.608025 CCATGTGTACAGTGGACGCTT 60.608 52.381 19.57 10.92 34.94 4.68
576 734 0.037326 CCATGTGTACAGTGGACGCT 60.037 55.000 19.57 3.15 34.94 5.07
577 735 0.037697 TCCATGTGTACAGTGGACGC 60.038 55.000 20.63 12.37 37.12 5.19
618 776 2.733956 ACCATCTCTCCTCTGTGACTC 58.266 52.381 0.00 0.00 0.00 3.36
625 783 2.630889 TGGTGAACCATCTCTCCTCT 57.369 50.000 0.00 0.00 42.01 3.69
653 835 0.697079 CAGAGATGGGATGGGATGGG 59.303 60.000 0.00 0.00 0.00 4.00
654 836 0.037877 GCAGAGATGGGATGGGATGG 59.962 60.000 0.00 0.00 0.00 3.51
655 837 1.065647 AGCAGAGATGGGATGGGATG 58.934 55.000 0.00 0.00 0.00 3.51
656 838 2.264455 GTAGCAGAGATGGGATGGGAT 58.736 52.381 0.00 0.00 0.00 3.85
657 839 1.722034 GTAGCAGAGATGGGATGGGA 58.278 55.000 0.00 0.00 0.00 4.37
687 875 0.665835 CGGAGGAGAGAAGATCCACG 59.334 60.000 0.00 0.00 39.47 4.94
691 879 1.679153 GGACACGGAGGAGAGAAGATC 59.321 57.143 0.00 0.00 0.00 2.75
701 889 2.158943 GGAGATTAAAGGGACACGGAGG 60.159 54.545 0.00 0.00 0.00 4.30
708 896 3.032459 AGACGGAGGAGATTAAAGGGAC 58.968 50.000 0.00 0.00 0.00 4.46
710 898 4.038162 CAGTAGACGGAGGAGATTAAAGGG 59.962 50.000 0.00 0.00 0.00 3.95
743 931 9.351570 GTAGTTGTCAAGTACAGTAATTACTCC 57.648 37.037 20.94 6.74 39.87 3.85
744 932 9.351570 GGTAGTTGTCAAGTACAGTAATTACTC 57.648 37.037 25.08 5.02 39.87 2.59
745 933 9.086758 AGGTAGTTGTCAAGTACAGTAATTACT 57.913 33.333 25.08 12.50 39.87 2.24
778 966 6.183360 ACAACCGTGGTGAGTATTTCATTTTT 60.183 34.615 0.00 0.00 38.29 1.94
779 967 5.300792 ACAACCGTGGTGAGTATTTCATTTT 59.699 36.000 0.00 0.00 38.29 1.82
781 969 4.394729 ACAACCGTGGTGAGTATTTCATT 58.605 39.130 0.00 0.00 38.29 2.57
782 970 4.015872 ACAACCGTGGTGAGTATTTCAT 57.984 40.909 0.00 0.00 38.29 2.57
783 971 3.478857 ACAACCGTGGTGAGTATTTCA 57.521 42.857 0.00 0.00 0.00 2.69
785 973 3.562557 GTGAACAACCGTGGTGAGTATTT 59.437 43.478 0.00 0.00 0.00 1.40
787 975 2.762745 GTGAACAACCGTGGTGAGTAT 58.237 47.619 0.00 0.00 0.00 2.12
788 976 1.536496 CGTGAACAACCGTGGTGAGTA 60.536 52.381 0.00 0.00 0.00 2.59
793 981 1.885850 GAGCGTGAACAACCGTGGT 60.886 57.895 0.00 0.00 0.00 4.16
801 989 1.367471 CTGGACTGGAGCGTGAACA 59.633 57.895 0.00 0.00 0.00 3.18
802 990 0.946221 CACTGGACTGGAGCGTGAAC 60.946 60.000 0.00 0.00 0.00 3.18
803 991 1.367471 CACTGGACTGGAGCGTGAA 59.633 57.895 0.00 0.00 0.00 3.18
822 1020 3.317430 GGTGGATCATTGGATGCTTCTTC 59.683 47.826 0.00 0.00 41.94 2.87
855 1060 0.390860 GGCACAGACAGACACAGAGT 59.609 55.000 0.00 0.00 0.00 3.24
856 1061 0.390492 TGGCACAGACAGACACAGAG 59.610 55.000 0.00 0.00 0.00 3.35
858 1063 0.105593 AGTGGCACAGACAGACACAG 59.894 55.000 21.41 0.00 41.80 3.66
859 1064 0.179076 CAGTGGCACAGACAGACACA 60.179 55.000 21.41 0.00 41.80 3.72
860 1065 1.502163 GCAGTGGCACAGACAGACAC 61.502 60.000 21.41 0.00 41.80 3.67
862 1067 0.948141 GAGCAGTGGCACAGACAGAC 60.948 60.000 21.41 0.00 41.80 3.51
863 1068 1.368950 GAGCAGTGGCACAGACAGA 59.631 57.895 21.41 0.00 41.80 3.41
864 1069 1.070275 TGAGCAGTGGCACAGACAG 59.930 57.895 21.41 5.12 41.80 3.51
902 1149 2.853235 TCGGTACTGAGACTGAGACA 57.147 50.000 0.00 0.00 31.00 3.41
906 1186 1.679336 GGAGCTCGGTACTGAGACTGA 60.679 57.143 31.69 0.00 38.28 3.41
971 1259 2.362397 GTGTCTGTGAGTTGACTCCAGA 59.638 50.000 19.44 19.44 42.48 3.86
972 1260 2.363680 AGTGTCTGTGAGTTGACTCCAG 59.636 50.000 16.77 16.77 42.20 3.86
973 1261 2.388735 AGTGTCTGTGAGTTGACTCCA 58.611 47.619 8.56 5.65 42.20 3.86
974 1262 3.612955 GCTAGTGTCTGTGAGTTGACTCC 60.613 52.174 8.56 1.57 42.20 3.85
984 1272 4.320129 CGATCCATCTAGCTAGTGTCTGTG 60.320 50.000 20.10 10.23 0.00 3.66
987 1275 3.417101 CCGATCCATCTAGCTAGTGTCT 58.583 50.000 20.10 7.40 0.00 3.41
991 1279 1.889829 GTGCCGATCCATCTAGCTAGT 59.110 52.381 20.10 5.41 0.00 2.57
992 1280 1.135546 CGTGCCGATCCATCTAGCTAG 60.136 57.143 15.01 15.01 0.00 3.42
993 1281 0.881796 CGTGCCGATCCATCTAGCTA 59.118 55.000 0.00 0.00 0.00 3.32
994 1282 1.662608 CGTGCCGATCCATCTAGCT 59.337 57.895 0.00 0.00 0.00 3.32
995 1283 1.373497 CCGTGCCGATCCATCTAGC 60.373 63.158 0.00 0.00 0.00 3.42
996 1284 1.290324 CCCGTGCCGATCCATCTAG 59.710 63.158 0.00 0.00 0.00 2.43
997 1285 2.867855 GCCCGTGCCGATCCATCTA 61.868 63.158 0.00 0.00 0.00 1.98
998 1286 4.241555 GCCCGTGCCGATCCATCT 62.242 66.667 0.00 0.00 0.00 2.90
1065 1353 4.143333 GCGTAGGAGGAAGCCGCA 62.143 66.667 0.00 0.00 43.53 5.69
1390 1684 6.442112 CACAAGAAAGAAGGAAGGAATGAAC 58.558 40.000 0.00 0.00 0.00 3.18
1391 1685 5.010012 GCACAAGAAAGAAGGAAGGAATGAA 59.990 40.000 0.00 0.00 0.00 2.57
1392 1686 4.520492 GCACAAGAAAGAAGGAAGGAATGA 59.480 41.667 0.00 0.00 0.00 2.57
1393 1687 4.522022 AGCACAAGAAAGAAGGAAGGAATG 59.478 41.667 0.00 0.00 0.00 2.67
1394 1688 4.734266 AGCACAAGAAAGAAGGAAGGAAT 58.266 39.130 0.00 0.00 0.00 3.01
1395 1689 4.170468 AGCACAAGAAAGAAGGAAGGAA 57.830 40.909 0.00 0.00 0.00 3.36
1396 1690 3.864789 AGCACAAGAAAGAAGGAAGGA 57.135 42.857 0.00 0.00 0.00 3.36
1397 1691 4.389374 TGTAGCACAAGAAAGAAGGAAGG 58.611 43.478 0.00 0.00 0.00 3.46
1402 1696 5.845985 TCGATTGTAGCACAAGAAAGAAG 57.154 39.130 7.58 0.00 41.94 2.85
1438 1757 5.067153 CAGTTCATTGTTACTCAACCAACCA 59.933 40.000 0.00 0.00 38.97 3.67
1439 1758 5.519722 CAGTTCATTGTTACTCAACCAACC 58.480 41.667 0.00 0.00 38.97 3.77
1440 1759 4.976116 GCAGTTCATTGTTACTCAACCAAC 59.024 41.667 0.00 0.00 38.97 3.77
1441 1760 4.642437 TGCAGTTCATTGTTACTCAACCAA 59.358 37.500 0.00 0.00 38.97 3.67
1704 2036 0.178929 CTAGGCTAGGGGTAGGGGTG 60.179 65.000 13.92 0.00 0.00 4.61
1764 2125 8.429237 ACTAATCCTGAAGAAGAAGAAGAAGA 57.571 34.615 0.00 0.00 0.00 2.87
1766 2127 9.930693 GTTACTAATCCTGAAGAAGAAGAAGAA 57.069 33.333 0.00 0.00 0.00 2.52
1767 2128 9.090103 TGTTACTAATCCTGAAGAAGAAGAAGA 57.910 33.333 0.00 0.00 0.00 2.87
1768 2129 9.883142 ATGTTACTAATCCTGAAGAAGAAGAAG 57.117 33.333 0.00 0.00 0.00 2.85
1769 2130 9.877178 GATGTTACTAATCCTGAAGAAGAAGAA 57.123 33.333 0.00 0.00 0.00 2.52
1770 2131 8.191446 CGATGTTACTAATCCTGAAGAAGAAGA 58.809 37.037 0.00 0.00 0.00 2.87
1771 2132 7.043059 GCGATGTTACTAATCCTGAAGAAGAAG 60.043 40.741 0.00 0.00 0.00 2.85
1775 2136 5.972935 TGCGATGTTACTAATCCTGAAGAA 58.027 37.500 0.00 0.00 0.00 2.52
1778 2139 4.982295 CGATGCGATGTTACTAATCCTGAA 59.018 41.667 0.00 0.00 0.00 3.02
1779 2140 4.277423 TCGATGCGATGTTACTAATCCTGA 59.723 41.667 0.00 0.00 0.00 3.86
1780 2141 4.546570 TCGATGCGATGTTACTAATCCTG 58.453 43.478 0.00 0.00 0.00 3.86
1782 2143 5.405571 ACAATCGATGCGATGTTACTAATCC 59.594 40.000 0.00 0.00 46.30 3.01
1783 2144 6.292129 CACAATCGATGCGATGTTACTAATC 58.708 40.000 0.00 0.00 46.30 1.75
1785 2146 4.026062 GCACAATCGATGCGATGTTACTAA 60.026 41.667 0.00 0.00 46.30 2.24
1791 2162 0.654160 CAGCACAATCGATGCGATGT 59.346 50.000 0.00 0.00 46.30 3.06
1792 2163 0.654160 ACAGCACAATCGATGCGATG 59.346 50.000 0.00 2.01 46.30 3.84
1797 2168 1.805943 TGGAACACAGCACAATCGATG 59.194 47.619 0.00 0.00 0.00 3.84
1831 2207 2.162408 GCTGTAGGACATTCTTTGGTGC 59.838 50.000 0.00 0.00 0.00 5.01
1832 2208 3.411446 TGCTGTAGGACATTCTTTGGTG 58.589 45.455 0.00 0.00 0.00 4.17
1833 2209 3.679389 CTGCTGTAGGACATTCTTTGGT 58.321 45.455 0.00 0.00 0.00 3.67
1834 2210 2.421424 GCTGCTGTAGGACATTCTTTGG 59.579 50.000 0.00 0.00 0.00 3.28
1835 2211 3.076621 TGCTGCTGTAGGACATTCTTTG 58.923 45.455 0.00 0.00 0.00 2.77
1852 2239 2.001159 GCAGATCTCACTCTTGTGCTG 58.999 52.381 0.00 0.00 43.49 4.41
1853 2240 1.901159 AGCAGATCTCACTCTTGTGCT 59.099 47.619 0.00 0.00 43.49 4.40
1854 2241 2.383368 AGCAGATCTCACTCTTGTGC 57.617 50.000 0.00 0.00 43.49 4.57
1855 2242 2.415857 GCAAGCAGATCTCACTCTTGTG 59.584 50.000 17.58 6.45 45.07 3.33
1856 2243 2.302445 AGCAAGCAGATCTCACTCTTGT 59.698 45.455 17.58 8.06 37.17 3.16
1857 2244 2.975266 AGCAAGCAGATCTCACTCTTG 58.025 47.619 14.45 14.45 37.70 3.02
1858 2245 3.336468 CAAGCAAGCAGATCTCACTCTT 58.664 45.455 0.00 0.00 0.00 2.85
1859 2246 2.936114 GCAAGCAAGCAGATCTCACTCT 60.936 50.000 0.00 0.00 0.00 3.24
1872 2268 4.065281 GGCAGGCAGGCAAGCAAG 62.065 66.667 12.49 0.00 43.51 4.01
1879 2283 1.610554 ATGAATGTTGGCAGGCAGGC 61.611 55.000 0.00 0.00 44.50 4.85
1880 2284 0.899720 AATGAATGTTGGCAGGCAGG 59.100 50.000 0.00 0.00 0.00 4.85
1908 2312 2.027745 AGCATGACACCAACGAAGATCT 60.028 45.455 0.00 0.00 0.00 2.75
1924 2328 0.816421 TGGTCGCCATCATGAGCATG 60.816 55.000 0.09 4.10 37.66 4.06
1925 2329 0.107066 TTGGTCGCCATCATGAGCAT 60.107 50.000 0.09 0.00 41.67 3.79
1926 2330 1.026182 GTTGGTCGCCATCATGAGCA 61.026 55.000 0.09 0.00 40.52 4.26
1927 2331 0.745845 AGTTGGTCGCCATCATGAGC 60.746 55.000 0.09 0.00 31.53 4.26
1928 2332 1.134580 AGAGTTGGTCGCCATCATGAG 60.135 52.381 0.09 0.00 31.53 2.90
1929 2333 0.904649 AGAGTTGGTCGCCATCATGA 59.095 50.000 0.00 0.00 31.53 3.07
1936 2340 1.576421 CAAAGCAGAGTTGGTCGCC 59.424 57.895 0.00 0.00 32.95 5.54
1938 2342 0.947244 AAGCAAAGCAGAGTTGGTCG 59.053 50.000 0.00 0.00 35.73 4.79
1964 2378 6.778559 TGATGAATTGATTGATGATTAGGCCA 59.221 34.615 5.01 0.00 0.00 5.36
1969 2383 9.830294 GCGTTATGATGAATTGATTGATGATTA 57.170 29.630 0.00 0.00 0.00 1.75
1971 2385 7.878036 TGCGTTATGATGAATTGATTGATGAT 58.122 30.769 0.00 0.00 0.00 2.45
1972 2386 7.261829 TGCGTTATGATGAATTGATTGATGA 57.738 32.000 0.00 0.00 0.00 2.92
1973 2387 7.646526 AGTTGCGTTATGATGAATTGATTGATG 59.353 33.333 0.00 0.00 0.00 3.07
1974 2388 7.646526 CAGTTGCGTTATGATGAATTGATTGAT 59.353 33.333 0.00 0.00 0.00 2.57
1975 2389 6.968335 CAGTTGCGTTATGATGAATTGATTGA 59.032 34.615 0.00 0.00 0.00 2.57
1976 2390 6.748658 ACAGTTGCGTTATGATGAATTGATTG 59.251 34.615 0.00 0.00 0.00 2.67
1977 2391 6.855836 ACAGTTGCGTTATGATGAATTGATT 58.144 32.000 0.00 0.00 0.00 2.57
2004 2418 3.558829 GTGTGATGCGATGTGATTGAGAT 59.441 43.478 0.00 0.00 0.00 2.75
2006 2420 2.674357 TGTGTGATGCGATGTGATTGAG 59.326 45.455 0.00 0.00 0.00 3.02
2029 2443 5.440234 TTATACTGCTAGACTGCTAGTGC 57.560 43.478 0.00 0.00 44.84 4.40
2030 2444 6.860539 CACATTATACTGCTAGACTGCTAGTG 59.139 42.308 0.00 0.00 44.84 2.74
2031 2445 6.515862 GCACATTATACTGCTAGACTGCTAGT 60.516 42.308 0.00 0.00 44.84 2.57
2032 2446 5.861251 GCACATTATACTGCTAGACTGCTAG 59.139 44.000 0.00 0.00 45.63 3.42
2035 2449 4.371786 TGCACATTATACTGCTAGACTGC 58.628 43.478 0.00 0.00 34.29 4.40
2036 2450 6.045318 AGTTGCACATTATACTGCTAGACTG 58.955 40.000 0.00 0.00 34.29 3.51
2037 2451 6.227298 AGTTGCACATTATACTGCTAGACT 57.773 37.500 0.00 0.00 34.29 3.24
2038 2452 8.085296 AGATAGTTGCACATTATACTGCTAGAC 58.915 37.037 0.00 0.00 34.29 2.59
2039 2453 8.084684 CAGATAGTTGCACATTATACTGCTAGA 58.915 37.037 0.00 0.00 34.29 2.43
2089 2742 8.900781 TGTGATTCTTATCCTACTGTAGTGTAC 58.099 37.037 13.42 0.00 0.00 2.90
2090 2743 9.642343 ATGTGATTCTTATCCTACTGTAGTGTA 57.358 33.333 13.42 3.71 0.00 2.90
2091 2744 7.956328 TGTGATTCTTATCCTACTGTAGTGT 57.044 36.000 13.42 4.60 0.00 3.55
2119 2777 5.307196 TGAAGGCTTCCTTGTTAGTACTCTT 59.693 40.000 23.68 0.00 44.82 2.85
2139 2810 4.871993 ACAATTAAGCAGCGAGATGAAG 57.128 40.909 0.00 0.00 0.00 3.02
2186 2857 0.328258 ATCTTGGTTTCGACAGGGGG 59.672 55.000 0.00 0.00 0.00 5.40
2192 2863 4.669318 TCATCTCGTATCTTGGTTTCGAC 58.331 43.478 0.00 0.00 0.00 4.20
2199 2870 9.869844 GTTATTTCATTTCATCTCGTATCTTGG 57.130 33.333 0.00 0.00 0.00 3.61
2204 2875 9.559732 TGATGGTTATTTCATTTCATCTCGTAT 57.440 29.630 0.00 0.00 34.03 3.06
2205 2876 8.956533 TGATGGTTATTTCATTTCATCTCGTA 57.043 30.769 0.00 0.00 34.03 3.43
2206 2877 7.864108 TGATGGTTATTTCATTTCATCTCGT 57.136 32.000 0.00 0.00 34.03 4.18
2207 2878 9.177304 CAATGATGGTTATTTCATTTCATCTCG 57.823 33.333 0.00 0.00 39.84 4.04
2255 2927 5.809464 TGTAGAAGCACAATCATATTTGCG 58.191 37.500 0.00 0.00 40.04 4.85
2256 2928 7.198390 ACATGTAGAAGCACAATCATATTTGC 58.802 34.615 0.00 0.00 35.08 3.68
2351 3023 7.873719 TGTTTGTTCCTTTCTTCAGTATTCA 57.126 32.000 0.00 0.00 0.00 2.57
2359 3031 5.460091 GCATCTGTTGTTTGTTCCTTTCTTC 59.540 40.000 0.00 0.00 0.00 2.87
2401 3077 1.065410 TTGGGGCTCCTGAACTGGAA 61.065 55.000 3.07 0.00 35.43 3.53
2426 3110 0.036388 GTTCCGTTCCATCTCTGGCA 60.036 55.000 0.00 0.00 42.80 4.92
2429 3113 0.246635 ACCGTTCCGTTCCATCTCTG 59.753 55.000 0.00 0.00 0.00 3.35
2436 3120 1.598676 GCAAGAAAACCGTTCCGTTCC 60.599 52.381 0.00 0.00 0.00 3.62
2437 3121 1.598676 GGCAAGAAAACCGTTCCGTTC 60.599 52.381 0.00 0.00 0.00 3.95
2438 3122 0.382873 GGCAAGAAAACCGTTCCGTT 59.617 50.000 0.00 0.00 0.00 4.44
2439 3123 0.748729 TGGCAAGAAAACCGTTCCGT 60.749 50.000 0.00 0.00 0.00 4.69
2440 3124 0.382515 TTGGCAAGAAAACCGTTCCG 59.617 50.000 0.00 0.00 0.00 4.30
2447 3131 2.097444 CGCGTGAATTTGGCAAGAAAAC 60.097 45.455 0.00 0.00 0.00 2.43
2497 3195 2.946762 GCGTGGTGTTCTGAAGCC 59.053 61.111 0.00 0.00 0.00 4.35
2528 3230 1.429148 CCTCAAGGCCGCGTGATAAC 61.429 60.000 4.92 0.00 0.00 1.89


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.