Multiple sequence alignment - TraesCS2B01G610800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G610800 chr2B 100.000 4803 0 0 1 4803 790439050 790443852 0.000000e+00 8870
1 TraesCS2B01G610800 chr2A 90.653 3124 173 64 1738 4803 770413763 770410701 0.000000e+00 4041
2 TraesCS2B01G610800 chr2A 90.057 523 25 11 607 1126 770414858 770414360 0.000000e+00 652
3 TraesCS2B01G610800 chr2A 84.054 740 46 23 442 1155 770425280 770424587 0.000000e+00 647
4 TraesCS2B01G610800 chr2A 84.840 686 46 18 484 1155 770463353 770462712 5.240000e-179 638
5 TraesCS2B01G610800 chr2A 84.533 653 44 18 484 1126 770430218 770429613 1.150000e-165 593
6 TraesCS2B01G610800 chr2A 86.542 483 31 15 1232 1714 770414203 770413755 7.180000e-138 501
7 TraesCS2B01G610800 chr2A 84.906 424 38 11 1 424 770426199 770425802 5.790000e-109 405
8 TraesCS2B01G610800 chr2A 84.198 424 39 11 1 424 770439944 770439549 2.100000e-103 387
9 TraesCS2B01G610800 chr2A 85.342 307 26 7 1 307 770464230 770463943 2.810000e-77 300
10 TraesCS2B01G610800 chr2A 83.898 118 10 2 307 424 770415440 770415332 2.360000e-18 104
11 TraesCS2B01G610800 chr2D 92.995 2598 108 40 1738 4298 645048190 645045630 0.000000e+00 3722
12 TraesCS2B01G610800 chr2D 86.697 669 39 14 518 1155 645049417 645048768 0.000000e+00 697
13 TraesCS2B01G610800 chr2D 86.957 483 34 10 1232 1714 645048635 645048182 2.560000e-142 516
14 TraesCS2B01G610800 chr2D 83.942 548 20 38 4311 4803 645045381 645044847 3.390000e-126 462


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G610800 chr2B 790439050 790443852 4802 False 8870.000000 8870 100.000000 1 4803 1 chr2B.!!$F1 4802
1 TraesCS2B01G610800 chr2A 770410701 770415440 4739 True 1324.500000 4041 87.787500 307 4803 4 chr2A.!!$R2 4496
2 TraesCS2B01G610800 chr2A 770424587 770430218 5631 True 548.333333 647 84.497667 1 1155 3 chr2A.!!$R3 1154
3 TraesCS2B01G610800 chr2A 770462712 770464230 1518 True 469.000000 638 85.091000 1 1155 2 chr2A.!!$R4 1154
4 TraesCS2B01G610800 chr2D 645044847 645049417 4570 True 1349.250000 3722 87.647750 518 4803 4 chr2D.!!$R1 4285

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
803 5366 0.035739 GGTGCGTGGGTAGGAGAAAA 59.964 55.0 0.0 0.0 0.0 2.29 F
1497 6148 0.033504 AACGACGAAGCTCCATGTGT 59.966 50.0 0.0 0.0 0.0 3.72 F
2395 7050 0.038890 AGAAGGAAAGAAGGCCCTGC 59.961 55.0 0.0 0.0 0.0 4.85 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1819 6470 0.178975 GGTGGTGGTCATGTTCCCAA 60.179 55.0 3.63 0.0 31.17 4.12 R
3457 8122 1.444119 GCAACGGTGGCAGAGACAAA 61.444 55.0 0.90 0.0 0.00 2.83 R
4298 9019 0.027194 CGCATCACACATGCACTAGC 59.973 55.0 7.32 0.0 44.75 3.42 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
44 4064 2.210116 CCTGTGCCGGTGTTATGTATC 58.790 52.381 1.90 0.00 0.00 2.24
50 4070 4.393680 GTGCCGGTGTTATGTATCTTTGAA 59.606 41.667 1.90 0.00 0.00 2.69
51 4071 5.004448 TGCCGGTGTTATGTATCTTTGAAA 58.996 37.500 1.90 0.00 0.00 2.69
52 4072 5.123186 TGCCGGTGTTATGTATCTTTGAAAG 59.877 40.000 1.90 0.00 0.00 2.62
57 4077 9.840427 CGGTGTTATGTATCTTTGAAAGAAAAT 57.160 29.630 12.10 8.34 41.63 1.82
81 4101 2.863809 ACAAGAGTTCGCCAGGAAAAT 58.136 42.857 0.00 0.00 36.14 1.82
96 4116 4.216257 CAGGAAAATCCAGACAACGAATGT 59.784 41.667 0.00 0.00 41.88 2.71
118 4138 6.568869 TGTGTTACACATTTTTGGAGAAAGG 58.431 36.000 14.73 0.00 39.62 3.11
123 4143 9.157104 GTTACACATTTTTGGAGAAAGGAAAAA 57.843 29.630 0.00 0.00 34.13 1.94
156 4176 0.238553 GGAAAAGCCAGACAGCGAAC 59.761 55.000 0.00 0.00 38.01 3.95
187 4207 4.920112 CGACGTGGTGTTGCCCCA 62.920 66.667 0.00 0.00 36.04 4.96
204 4224 3.404978 CATGTGTTGGAATGCGTGG 57.595 52.632 0.00 0.00 0.00 4.94
205 4225 0.109179 CATGTGTTGGAATGCGTGGG 60.109 55.000 0.00 0.00 0.00 4.61
206 4226 0.251121 ATGTGTTGGAATGCGTGGGA 60.251 50.000 0.00 0.00 0.00 4.37
207 4227 1.169661 TGTGTTGGAATGCGTGGGAC 61.170 55.000 0.00 0.00 0.00 4.46
208 4228 1.963855 TGTTGGAATGCGTGGGACG 60.964 57.895 0.00 0.00 45.88 4.79
209 4229 2.359354 TTGGAATGCGTGGGACGG 60.359 61.111 0.00 0.00 42.82 4.79
210 4230 3.185299 TTGGAATGCGTGGGACGGT 62.185 57.895 0.00 0.00 42.82 4.83
211 4231 3.124921 GGAATGCGTGGGACGGTG 61.125 66.667 0.00 0.00 42.82 4.94
212 4232 2.358247 GAATGCGTGGGACGGTGT 60.358 61.111 0.00 0.00 42.82 4.16
213 4233 1.079681 GAATGCGTGGGACGGTGTA 60.080 57.895 0.00 0.00 42.82 2.90
214 4234 0.461339 GAATGCGTGGGACGGTGTAT 60.461 55.000 0.00 0.00 42.82 2.29
215 4235 0.825410 AATGCGTGGGACGGTGTATA 59.175 50.000 0.00 0.00 42.82 1.47
216 4236 0.387929 ATGCGTGGGACGGTGTATAG 59.612 55.000 0.00 0.00 42.82 1.31
217 4237 1.066918 GCGTGGGACGGTGTATAGG 59.933 63.158 0.00 0.00 42.82 2.57
233 4253 1.461091 TAGGGCATTCGCTAGGGTCG 61.461 60.000 6.70 0.00 38.60 4.79
267 4287 5.170625 CGAACATTCGCCGGTTATAATTTTG 59.829 40.000 1.90 0.00 44.26 2.44
285 4305 9.793252 ATAATTTTGGAAGAAGATTTCATCACG 57.207 29.630 0.00 0.00 0.00 4.35
299 4319 4.391405 TCATCACGTCATGCTCATAACT 57.609 40.909 0.00 0.00 0.00 2.24
322 4342 0.447011 CGGATCGAGCCGTAGTATCC 59.553 60.000 32.79 9.89 46.07 2.59
327 4347 0.317603 CGAGCCGTAGTATCCGTTGG 60.318 60.000 0.00 0.00 0.00 3.77
353 4373 8.175069 GTGTATGTTGTTACATGTGTCCAATAG 58.825 37.037 9.11 0.00 44.56 1.73
354 4374 6.757897 ATGTTGTTACATGTGTCCAATAGG 57.242 37.500 9.11 0.00 43.29 2.57
355 4375 4.457603 TGTTGTTACATGTGTCCAATAGGC 59.542 41.667 9.11 0.00 33.74 3.93
356 4376 4.293662 TGTTACATGTGTCCAATAGGCA 57.706 40.909 9.11 0.00 33.74 4.75
357 4377 4.657013 TGTTACATGTGTCCAATAGGCAA 58.343 39.130 9.11 0.00 33.74 4.52
358 4378 4.457603 TGTTACATGTGTCCAATAGGCAAC 59.542 41.667 9.11 0.62 33.74 4.17
359 4379 3.153369 ACATGTGTCCAATAGGCAACA 57.847 42.857 0.00 0.00 41.41 3.33
363 4383 6.600388 ACATGTGTCCAATAGGCAACATATA 58.400 36.000 0.00 0.00 38.09 0.86
370 4390 9.860650 TGTCCAATAGGCAACATATATAACTTT 57.139 29.630 0.00 0.00 41.41 2.66
414 4434 1.070445 GATGGGAGGCTCCATGTCG 59.930 63.158 33.27 0.00 46.67 4.35
417 4437 1.758514 GGGAGGCTCCATGTCGAGA 60.759 63.158 33.27 0.00 38.64 4.04
421 4441 2.094286 GGAGGCTCCATGTCGAGATATG 60.094 54.545 28.55 3.28 36.28 1.78
424 4444 1.674221 GCTCCATGTCGAGATATGCCC 60.674 57.143 0.00 0.00 30.97 5.36
425 4445 1.620323 CTCCATGTCGAGATATGCCCA 59.380 52.381 0.00 0.00 30.97 5.36
431 4923 1.597663 GTCGAGATATGCCCAAAACCG 59.402 52.381 0.00 0.00 0.00 4.44
434 4926 2.031683 CGAGATATGCCCAAAACCGAAC 59.968 50.000 0.00 0.00 0.00 3.95
439 4931 1.313812 TGCCCAAAACCGAACGTGTT 61.314 50.000 0.00 0.00 0.00 3.32
443 4935 1.268335 CCAAAACCGAACGTGTTCCAG 60.268 52.381 7.13 2.15 36.27 3.86
479 5005 2.169789 CAGAGACGGCATGGCTTCG 61.170 63.158 18.25 5.67 0.00 3.79
482 5008 2.203070 GACGGCATGGCTTCGGAT 60.203 61.111 18.09 0.00 0.00 4.18
515 5052 1.189403 GAGGTTGCTATTCGACGACG 58.811 55.000 0.00 0.00 41.26 5.12
536 5073 1.469703 ACGACGACGACAACATGGATA 59.530 47.619 15.32 0.00 42.66 2.59
549 5086 5.707298 ACAACATGGATAGGTTTCTCACTTG 59.293 40.000 0.00 0.00 0.00 3.16
554 5091 6.633500 TGGATAGGTTTCTCACTTGTTTTG 57.367 37.500 0.00 0.00 0.00 2.44
603 5141 1.491670 CGATTCGGCTCGTCAATGAT 58.508 50.000 0.00 0.00 34.00 2.45
604 5142 1.860950 CGATTCGGCTCGTCAATGATT 59.139 47.619 0.00 0.00 34.00 2.57
680 5237 1.070914 GAGGGGCCTAATCTACAGCAC 59.929 57.143 0.84 0.00 0.00 4.40
727 5284 1.740718 GCCCGTCCAACATTCTCTCTC 60.741 57.143 0.00 0.00 0.00 3.20
728 5285 1.827969 CCCGTCCAACATTCTCTCTCT 59.172 52.381 0.00 0.00 0.00 3.10
729 5286 2.159170 CCCGTCCAACATTCTCTCTCTC 60.159 54.545 0.00 0.00 0.00 3.20
730 5287 2.757868 CCGTCCAACATTCTCTCTCTCT 59.242 50.000 0.00 0.00 0.00 3.10
731 5288 3.181491 CCGTCCAACATTCTCTCTCTCTC 60.181 52.174 0.00 0.00 0.00 3.20
732 5289 3.694072 CGTCCAACATTCTCTCTCTCTCT 59.306 47.826 0.00 0.00 0.00 3.10
733 5290 4.201910 CGTCCAACATTCTCTCTCTCTCTC 60.202 50.000 0.00 0.00 0.00 3.20
741 5298 3.994317 TCTCTCTCTCTCTCTCTCAGGA 58.006 50.000 0.00 0.00 0.00 3.86
764 5321 2.792890 CGTGCTCTCTGTGATTAGGACG 60.793 54.545 0.00 0.00 44.99 4.79
765 5322 2.423892 GTGCTCTCTGTGATTAGGACGA 59.576 50.000 0.00 0.00 0.00 4.20
766 5323 2.685388 TGCTCTCTGTGATTAGGACGAG 59.315 50.000 0.00 0.00 0.00 4.18
767 5324 2.946329 GCTCTCTGTGATTAGGACGAGA 59.054 50.000 0.00 0.00 0.00 4.04
768 5325 3.378742 GCTCTCTGTGATTAGGACGAGAA 59.621 47.826 0.00 0.00 0.00 2.87
769 5326 4.142359 GCTCTCTGTGATTAGGACGAGAAA 60.142 45.833 0.00 0.00 0.00 2.52
770 5327 5.622460 GCTCTCTGTGATTAGGACGAGAAAA 60.622 44.000 0.00 0.00 0.00 2.29
771 5328 6.340962 TCTCTGTGATTAGGACGAGAAAAA 57.659 37.500 0.00 0.00 0.00 1.94
802 5365 0.834687 AGGTGCGTGGGTAGGAGAAA 60.835 55.000 0.00 0.00 0.00 2.52
803 5366 0.035739 GGTGCGTGGGTAGGAGAAAA 59.964 55.000 0.00 0.00 0.00 2.29
804 5367 1.543871 GGTGCGTGGGTAGGAGAAAAA 60.544 52.381 0.00 0.00 0.00 1.94
845 5410 4.507916 CGAGAGAGGCGGAGGGGA 62.508 72.222 0.00 0.00 0.00 4.81
846 5411 2.520741 GAGAGAGGCGGAGGGGAG 60.521 72.222 0.00 0.00 0.00 4.30
950 5530 2.194271 CAGCTAAATCCTCGTCGTTCC 58.806 52.381 0.00 0.00 0.00 3.62
1115 5695 0.537371 AAGTGGAAGGGCAAGTTCGG 60.537 55.000 0.00 0.00 0.00 4.30
1155 5746 1.006400 CCTCTTTCCCCATTTCCAGCT 59.994 52.381 0.00 0.00 0.00 4.24
1157 5748 3.282885 CTCTTTCCCCATTTCCAGCTAC 58.717 50.000 0.00 0.00 0.00 3.58
1159 5750 3.333680 TCTTTCCCCATTTCCAGCTACTT 59.666 43.478 0.00 0.00 0.00 2.24
1160 5751 2.806945 TCCCCATTTCCAGCTACTTG 57.193 50.000 0.00 0.00 0.00 3.16
1161 5752 1.284785 TCCCCATTTCCAGCTACTTGG 59.715 52.381 0.00 0.00 39.70 3.61
1162 5753 1.284785 CCCCATTTCCAGCTACTTGGA 59.715 52.381 0.00 0.00 45.34 3.53
1163 5754 2.091665 CCCCATTTCCAGCTACTTGGAT 60.092 50.000 0.00 0.00 46.22 3.41
1177 5782 4.541973 ACTTGGATTTGGATTTTGCCTC 57.458 40.909 0.00 0.00 0.00 4.70
1206 5820 4.674281 AGCTAGCTACCTGTGGTTAATC 57.326 45.455 17.69 0.00 37.09 1.75
1208 5822 4.100189 AGCTAGCTACCTGTGGTTAATCAG 59.900 45.833 17.69 0.00 37.09 2.90
1221 5839 6.605594 TGTGGTTAATCAGGGATGGAAAATAC 59.394 38.462 0.00 0.00 0.00 1.89
1222 5840 6.833933 GTGGTTAATCAGGGATGGAAAATACT 59.166 38.462 0.00 0.00 0.00 2.12
1223 5841 6.833416 TGGTTAATCAGGGATGGAAAATACTG 59.167 38.462 0.00 0.00 0.00 2.74
1224 5842 6.833933 GGTTAATCAGGGATGGAAAATACTGT 59.166 38.462 0.00 0.00 0.00 3.55
1225 5843 7.342026 GGTTAATCAGGGATGGAAAATACTGTT 59.658 37.037 0.00 0.00 0.00 3.16
1229 5847 9.492730 AATCAGGGATGGAAAATACTGTTATTT 57.507 29.630 0.00 0.00 39.22 1.40
1230 5848 8.893563 TCAGGGATGGAAAATACTGTTATTTT 57.106 30.769 2.71 2.71 46.30 1.82
1254 5905 8.547967 TTTCTTTCTTGTCCATACATACTGTC 57.452 34.615 0.00 0.00 34.97 3.51
1261 5912 4.881273 TGTCCATACATACTGTCCAATTGC 59.119 41.667 0.00 0.00 0.00 3.56
1271 5922 2.816087 CTGTCCAATTGCAAGCTGTAGT 59.184 45.455 4.94 0.00 0.00 2.73
1272 5923 4.002982 CTGTCCAATTGCAAGCTGTAGTA 58.997 43.478 4.94 0.00 0.00 1.82
1273 5924 4.002982 TGTCCAATTGCAAGCTGTAGTAG 58.997 43.478 4.94 0.00 0.00 2.57
1274 5925 4.253685 GTCCAATTGCAAGCTGTAGTAGA 58.746 43.478 4.94 0.00 0.00 2.59
1275 5926 4.878397 GTCCAATTGCAAGCTGTAGTAGAT 59.122 41.667 4.94 0.00 0.00 1.98
1292 5943 6.857777 AGTAGATTAGATGCACATTTCAGC 57.142 37.500 0.00 0.00 0.00 4.26
1309 5960 0.108207 AGCAGATAGATGGTGCTGGC 59.892 55.000 0.00 0.00 45.81 4.85
1312 5963 0.108207 AGATAGATGGTGCTGGCAGC 59.892 55.000 31.91 31.91 43.90 5.25
1321 5972 1.605451 TGCTGGCAGCTGCTGATTT 60.605 52.632 36.50 0.00 42.97 2.17
1322 5973 1.139095 GCTGGCAGCTGCTGATTTC 59.861 57.895 35.82 19.78 38.45 2.17
1323 5974 1.313812 GCTGGCAGCTGCTGATTTCT 61.314 55.000 35.82 0.00 38.45 2.52
1329 5980 2.748532 GCAGCTGCTGATTTCTTCTTCT 59.251 45.455 32.30 0.00 38.21 2.85
1353 6004 6.272318 TGCAACAAATAGTTTTGAGTTCTGG 58.728 36.000 5.52 0.00 44.11 3.86
1368 6019 1.048724 TCTGGGACTAAGCATCCGGG 61.049 60.000 0.00 0.00 37.08 5.73
1372 6023 1.883084 GACTAAGCATCCGGGCACG 60.883 63.158 0.00 0.00 40.55 5.34
1373 6024 2.292794 GACTAAGCATCCGGGCACGA 62.293 60.000 11.66 0.00 44.60 4.35
1389 6040 0.822164 ACGAATTCTAGGTGGACGGG 59.178 55.000 3.52 0.00 0.00 5.28
1397 6048 1.541310 TAGGTGGACGGGCACTTGAG 61.541 60.000 0.00 0.00 0.00 3.02
1435 6086 4.520111 TCATGGACCACAAACTTCTTGATG 59.480 41.667 0.00 0.00 0.00 3.07
1436 6087 4.163441 TGGACCACAAACTTCTTGATGA 57.837 40.909 0.00 0.00 0.00 2.92
1437 6088 4.728772 TGGACCACAAACTTCTTGATGAT 58.271 39.130 0.00 0.00 0.00 2.45
1442 6093 5.221303 ACCACAAACTTCTTGATGATTGGTG 60.221 40.000 9.84 0.00 32.39 4.17
1497 6148 0.033504 AACGACGAAGCTCCATGTGT 59.966 50.000 0.00 0.00 0.00 3.72
1498 6149 0.033504 ACGACGAAGCTCCATGTGTT 59.966 50.000 0.00 0.00 0.00 3.32
1499 6150 0.439985 CGACGAAGCTCCATGTGTTG 59.560 55.000 0.00 0.00 0.00 3.33
1500 6151 1.512926 GACGAAGCTCCATGTGTTGT 58.487 50.000 0.00 0.00 0.00 3.32
1501 6152 1.873591 GACGAAGCTCCATGTGTTGTT 59.126 47.619 0.00 0.00 0.00 2.83
1502 6153 3.064207 GACGAAGCTCCATGTGTTGTTA 58.936 45.455 0.00 0.00 0.00 2.41
1503 6154 3.472652 ACGAAGCTCCATGTGTTGTTAA 58.527 40.909 0.00 0.00 0.00 2.01
1504 6155 3.250040 ACGAAGCTCCATGTGTTGTTAAC 59.750 43.478 0.00 0.00 0.00 2.01
1505 6156 3.498397 CGAAGCTCCATGTGTTGTTAACT 59.502 43.478 7.22 0.00 0.00 2.24
1506 6157 4.611355 CGAAGCTCCATGTGTTGTTAACTG 60.611 45.833 7.22 0.00 0.00 3.16
1507 6158 2.554032 AGCTCCATGTGTTGTTAACTGC 59.446 45.455 7.22 0.30 0.00 4.40
1508 6159 2.554032 GCTCCATGTGTTGTTAACTGCT 59.446 45.455 7.22 0.00 0.00 4.24
1509 6160 3.751175 GCTCCATGTGTTGTTAACTGCTA 59.249 43.478 7.22 0.00 0.00 3.49
1510 6161 4.378459 GCTCCATGTGTTGTTAACTGCTAC 60.378 45.833 7.22 2.09 0.00 3.58
1511 6162 3.743911 TCCATGTGTTGTTAACTGCTACG 59.256 43.478 7.22 0.00 0.00 3.51
1527 6178 0.907704 TACGCATCTGGGGTGTCCTT 60.908 55.000 0.00 0.00 43.36 3.36
1563 6214 2.227388 CTGTGCTGTGATTTCAGTTCCC 59.773 50.000 0.00 0.00 37.70 3.97
1592 6243 5.918426 ACTAGTTCTAGCCTGTAAAGGAC 57.082 43.478 1.93 0.00 0.00 3.85
1593 6244 4.710865 ACTAGTTCTAGCCTGTAAAGGACC 59.289 45.833 1.93 0.00 0.00 4.46
1634 6285 8.997323 CATTTGGCAATTAATTTGTTCTTGGTA 58.003 29.630 0.00 0.00 37.65 3.25
1637 6288 7.901029 TGGCAATTAATTTGTTCTTGGTATCA 58.099 30.769 0.00 0.00 37.65 2.15
1648 6299 6.884832 TGTTCTTGGTATCAGTAGGGTTATG 58.115 40.000 0.00 0.00 0.00 1.90
1663 6314 7.777910 AGTAGGGTTATGCATATGCTTTACAAA 59.222 33.333 27.13 10.28 42.66 2.83
1665 6316 8.704849 AGGGTTATGCATATGCTTTACAAATA 57.295 30.769 27.13 12.47 42.66 1.40
1674 6325 8.471457 GCATATGCTTTACAAATAACAACATCG 58.529 33.333 20.64 0.00 38.21 3.84
1685 6336 1.800805 ACAACATCGCTCCTGTTCAG 58.199 50.000 0.00 0.00 34.69 3.02
1686 6337 1.070758 ACAACATCGCTCCTGTTCAGT 59.929 47.619 0.00 0.00 34.69 3.41
1689 6340 2.851195 ACATCGCTCCTGTTCAGTTTT 58.149 42.857 0.00 0.00 0.00 2.43
1715 6366 7.637631 TTTTTCCATATATGTGTAGCTTGCA 57.362 32.000 11.73 0.00 0.00 4.08
1716 6367 7.822161 TTTTCCATATATGTGTAGCTTGCAT 57.178 32.000 11.73 0.00 0.00 3.96
1717 6368 6.806388 TTCCATATATGTGTAGCTTGCATG 57.194 37.500 11.73 0.00 0.00 4.06
1718 6369 4.696877 TCCATATATGTGTAGCTTGCATGC 59.303 41.667 16.37 16.37 0.00 4.06
1719 6370 4.698780 CCATATATGTGTAGCTTGCATGCT 59.301 41.667 27.70 27.70 46.11 3.79
1720 6371 5.391629 CCATATATGTGTAGCTTGCATGCTG 60.392 44.000 31.20 14.58 43.87 4.41
1721 6372 2.118313 ATGTGTAGCTTGCATGCTGA 57.882 45.000 31.20 17.82 43.87 4.26
1722 6373 1.159285 TGTGTAGCTTGCATGCTGAC 58.841 50.000 31.20 25.94 43.87 3.51
1723 6374 1.159285 GTGTAGCTTGCATGCTGACA 58.841 50.000 31.20 25.65 43.87 3.58
1724 6375 1.135859 GTGTAGCTTGCATGCTGACAC 60.136 52.381 31.20 29.95 43.87 3.67
1725 6376 1.271001 TGTAGCTTGCATGCTGACACT 60.271 47.619 31.20 11.39 43.87 3.55
1726 6377 2.028203 TGTAGCTTGCATGCTGACACTA 60.028 45.455 31.20 12.09 43.87 2.74
1727 6378 1.446907 AGCTTGCATGCTGACACTAC 58.553 50.000 24.83 0.00 42.33 2.73
1728 6379 1.159285 GCTTGCATGCTGACACTACA 58.841 50.000 20.33 0.00 0.00 2.74
1729 6380 1.536766 GCTTGCATGCTGACACTACAA 59.463 47.619 20.33 0.00 0.00 2.41
1730 6381 2.163010 GCTTGCATGCTGACACTACAAT 59.837 45.455 20.33 0.00 0.00 2.71
1731 6382 3.366679 GCTTGCATGCTGACACTACAATT 60.367 43.478 20.33 0.00 0.00 2.32
1732 6383 4.409570 CTTGCATGCTGACACTACAATTC 58.590 43.478 20.33 0.00 0.00 2.17
1733 6384 3.410508 TGCATGCTGACACTACAATTCA 58.589 40.909 20.33 0.00 0.00 2.57
1734 6385 4.011698 TGCATGCTGACACTACAATTCAT 58.988 39.130 20.33 0.00 0.00 2.57
1735 6386 4.460034 TGCATGCTGACACTACAATTCATT 59.540 37.500 20.33 0.00 0.00 2.57
1736 6387 5.032863 GCATGCTGACACTACAATTCATTC 58.967 41.667 11.37 0.00 0.00 2.67
1781 6432 5.428184 GAAGCTATCCAAGGTATATGCCT 57.572 43.478 6.53 6.53 41.41 4.75
1791 6442 5.636903 AAGGTATATGCCTTGACACATCT 57.363 39.130 22.73 0.00 46.28 2.90
1792 6443 5.220710 AGGTATATGCCTTGACACATCTC 57.779 43.478 6.53 0.00 34.71 2.75
1793 6444 4.904251 AGGTATATGCCTTGACACATCTCT 59.096 41.667 6.53 0.00 34.71 3.10
1794 6445 5.011533 AGGTATATGCCTTGACACATCTCTC 59.988 44.000 6.53 0.00 34.71 3.20
1813 6464 4.206375 TCTCTCTCTCAGCTGTAATCTGG 58.794 47.826 14.67 1.40 32.63 3.86
1819 6470 2.499289 CTCAGCTGTAATCTGGACTGGT 59.501 50.000 14.67 0.00 32.63 4.00
1831 6482 1.202879 TGGACTGGTTGGGAACATGAC 60.203 52.381 0.00 0.00 42.32 3.06
1832 6483 1.534729 GACTGGTTGGGAACATGACC 58.465 55.000 0.00 2.11 40.91 4.02
1833 6484 0.850100 ACTGGTTGGGAACATGACCA 59.150 50.000 0.00 0.00 46.44 4.02
1834 6485 1.247567 CTGGTTGGGAACATGACCAC 58.752 55.000 0.00 0.00 44.36 4.16
1849 6500 4.314522 TGACCACCACCATTAATGTCAT 57.685 40.909 14.25 0.00 0.00 3.06
1876 6527 7.989741 ACATACTTGAAGCATAGTAGCTCAAAT 59.010 33.333 0.00 0.00 45.89 2.32
1881 6532 3.388308 AGCATAGTAGCTCAAATCAGCG 58.612 45.455 0.00 0.00 42.18 5.18
1899 6550 1.539827 GCGGTTTAACTTCATGCCTGT 59.460 47.619 0.00 0.00 0.00 4.00
1902 6553 3.004315 CGGTTTAACTTCATGCCTGTTGT 59.996 43.478 0.00 0.00 0.00 3.32
1904 6555 5.616866 CGGTTTAACTTCATGCCTGTTGTAG 60.617 44.000 0.00 0.00 0.00 2.74
1909 6560 1.825090 TCATGCCTGTTGTAGCTTGG 58.175 50.000 0.00 0.00 35.49 3.61
1927 6579 7.102847 AGCTTGGAAGATAGTCAGTAACTAC 57.897 40.000 0.00 0.00 43.21 2.73
1932 6584 5.587844 GGAAGATAGTCAGTAACTACGGTCA 59.412 44.000 0.00 0.00 43.21 4.02
1941 6593 8.260818 AGTCAGTAACTACGGTCAGTATAGTAA 58.739 37.037 0.00 0.00 36.07 2.24
1945 6597 9.213799 AGTAACTACGGTCAGTATAGTAATAGC 57.786 37.037 0.00 0.00 34.34 2.97
2027 6680 2.754552 GGGTGCTTGCATTCTCATACAA 59.245 45.455 0.00 0.00 0.00 2.41
2139 6792 4.760530 ATGTAATTGAGCACCTCTAGCA 57.239 40.909 0.00 0.00 0.00 3.49
2269 6922 3.906720 TTAGTAGCTGCCTTACCTTGG 57.093 47.619 0.00 0.00 0.00 3.61
2302 6957 4.517285 AGGTAGCATTCGACAATTGTGAT 58.483 39.130 17.58 2.13 0.00 3.06
2395 7050 0.038890 AGAAGGAAAGAAGGCCCTGC 59.961 55.000 0.00 0.00 0.00 4.85
2434 7089 8.204160 TGTATGGAAAGTCAACACCTCATATAG 58.796 37.037 0.00 0.00 0.00 1.31
2483 7138 8.401709 GTCATTTGAACATTCTTATCCTTCCTC 58.598 37.037 0.00 0.00 0.00 3.71
2543 7205 4.261572 GCATAAGAGTTGGCAGAAAACACA 60.262 41.667 0.00 0.00 0.00 3.72
2949 7611 2.886523 TCCTTTCTGATGGCAGTGTTTG 59.113 45.455 0.00 0.00 42.84 2.93
2950 7612 2.624838 CCTTTCTGATGGCAGTGTTTGT 59.375 45.455 0.00 0.00 42.84 2.83
2951 7613 3.551454 CCTTTCTGATGGCAGTGTTTGTG 60.551 47.826 0.00 0.00 42.84 3.33
2952 7614 0.953727 TCTGATGGCAGTGTTTGTGC 59.046 50.000 0.00 0.00 42.84 4.57
2953 7615 0.956633 CTGATGGCAGTGTTTGTGCT 59.043 50.000 0.00 0.00 40.97 4.40
2954 7616 0.669619 TGATGGCAGTGTTTGTGCTG 59.330 50.000 0.00 0.00 40.97 4.41
3237 7899 1.144913 TGGGAGGGTTTTCACTTCAGG 59.855 52.381 0.00 0.00 31.31 3.86
3327 7992 4.714555 AGCGACGACGACGACACG 62.715 66.667 22.94 16.03 42.66 4.49
3457 8122 2.158475 TCCTGCCTCCTCAAATTGTTGT 60.158 45.455 0.00 0.00 36.07 3.32
3624 8294 2.425668 AGGTGGTTTCAAAGTTGAACCG 59.574 45.455 5.98 0.00 45.99 4.44
3806 8476 1.429148 CCTCAAGGCCGCGTGATAAC 61.429 60.000 4.92 0.00 0.00 1.89
3837 8511 2.946762 GCGTGGTGTTCTGAAGCC 59.053 61.111 0.00 0.00 0.00 4.35
3887 8575 2.097444 CGCGTGAATTTGGCAAGAAAAC 60.097 45.455 0.00 0.00 0.00 2.43
3894 8582 0.382515 TTGGCAAGAAAACCGTTCCG 59.617 50.000 0.00 0.00 0.00 4.30
3895 8583 0.748729 TGGCAAGAAAACCGTTCCGT 60.749 50.000 0.00 0.00 0.00 4.69
3896 8584 0.382873 GGCAAGAAAACCGTTCCGTT 59.617 50.000 0.00 0.00 0.00 4.44
3897 8585 1.598676 GGCAAGAAAACCGTTCCGTTC 60.599 52.381 0.00 0.00 0.00 3.95
3898 8586 1.598676 GCAAGAAAACCGTTCCGTTCC 60.599 52.381 0.00 0.00 0.00 3.62
3905 8593 0.246635 ACCGTTCCGTTCCATCTCTG 59.753 55.000 0.00 0.00 0.00 3.35
3908 8596 0.036388 GTTCCGTTCCATCTCTGGCA 60.036 55.000 0.00 0.00 42.80 4.92
3933 8629 1.065410 TTGGGGCTCCTGAACTGGAA 61.065 55.000 3.07 0.00 35.43 3.53
3975 8675 5.460091 GCATCTGTTGTTTGTTCCTTTCTTC 59.540 40.000 0.00 0.00 0.00 2.87
3983 8683 7.873719 TGTTTGTTCCTTTCTTCAGTATTCA 57.126 32.000 0.00 0.00 0.00 2.57
4079 8779 5.809464 TGTAGAAGCACAATCATATTTGCG 58.191 37.500 0.00 0.00 40.04 4.85
4127 8828 9.177304 CAATGATGGTTATTTCATTTCATCTCG 57.823 33.333 0.00 0.00 39.84 4.04
4129 8830 8.956533 TGATGGTTATTTCATTTCATCTCGTA 57.043 30.769 0.00 0.00 34.03 3.43
4130 8831 9.559732 TGATGGTTATTTCATTTCATCTCGTAT 57.440 29.630 0.00 0.00 34.03 3.06
4132 8833 9.784531 ATGGTTATTTCATTTCATCTCGTATCT 57.215 29.630 0.00 0.00 0.00 1.98
4133 8834 9.613428 TGGTTATTTCATTTCATCTCGTATCTT 57.387 29.630 0.00 0.00 0.00 2.40
4134 8835 9.869844 GGTTATTTCATTTCATCTCGTATCTTG 57.130 33.333 0.00 0.00 0.00 3.02
4135 8836 9.869844 GTTATTTCATTTCATCTCGTATCTTGG 57.130 33.333 0.00 0.00 0.00 3.61
4142 8843 4.669318 TCATCTCGTATCTTGGTTTCGAC 58.331 43.478 0.00 0.00 0.00 4.20
4148 8849 0.328258 ATCTTGGTTTCGACAGGGGG 59.672 55.000 0.00 0.00 0.00 5.40
4195 8896 4.871993 ACAATTAAGCAGCGAGATGAAG 57.128 40.909 0.00 0.00 0.00 3.02
4215 8929 5.307196 TGAAGGCTTCCTTGTTAGTACTCTT 59.693 40.000 23.68 0.00 44.82 2.85
4243 8962 7.956328 TGTGATTCTTATCCTACTGTAGTGT 57.044 36.000 13.42 4.60 0.00 3.55
4244 8963 9.642343 ATGTGATTCTTATCCTACTGTAGTGTA 57.358 33.333 13.42 3.71 0.00 2.90
4245 8964 8.900781 TGTGATTCTTATCCTACTGTAGTGTAC 58.099 37.037 13.42 0.00 0.00 2.90
4295 9016 8.084684 CAGATAGTTGCACATTATACTGCTAGA 58.915 37.037 0.00 0.00 34.29 2.43
4296 9017 8.085296 AGATAGTTGCACATTATACTGCTAGAC 58.915 37.037 0.00 0.00 34.29 2.59
4297 9018 6.227298 AGTTGCACATTATACTGCTAGACT 57.773 37.500 0.00 0.00 34.29 3.24
4298 9019 6.045318 AGTTGCACATTATACTGCTAGACTG 58.955 40.000 0.00 0.00 34.29 3.51
4300 9021 4.100035 TGCACATTATACTGCTAGACTGCT 59.900 41.667 0.00 0.00 34.29 4.24
4301 9022 5.301805 TGCACATTATACTGCTAGACTGCTA 59.698 40.000 0.00 0.00 34.29 3.49
4302 9023 5.861251 GCACATTATACTGCTAGACTGCTAG 59.139 44.000 0.00 0.00 45.63 3.42
4303 9024 6.515862 GCACATTATACTGCTAGACTGCTAGT 60.516 42.308 0.00 0.00 44.84 2.57
4304 9025 6.860539 CACATTATACTGCTAGACTGCTAGTG 59.139 42.308 0.00 0.00 44.84 2.74
4305 9026 5.440234 TTATACTGCTAGACTGCTAGTGC 57.560 43.478 0.00 0.00 44.84 4.40
4328 9286 2.674357 TGTGTGATGCGATGTGATTGAG 59.326 45.455 0.00 0.00 0.00 3.02
4330 9288 3.558829 GTGTGATGCGATGTGATTGAGAT 59.441 43.478 0.00 0.00 0.00 2.75
4351 9309 3.669536 TGGACAGTTGCGTTATGATGAA 58.330 40.909 0.00 0.00 0.00 2.57
4352 9310 4.260985 TGGACAGTTGCGTTATGATGAAT 58.739 39.130 0.00 0.00 0.00 2.57
4353 9311 4.699735 TGGACAGTTGCGTTATGATGAATT 59.300 37.500 0.00 0.00 0.00 2.17
4354 9312 5.030295 GGACAGTTGCGTTATGATGAATTG 58.970 41.667 0.00 0.00 0.00 2.32
4370 9328 6.778559 TGATGAATTGATTGATGATTAGGCCA 59.221 34.615 5.01 0.00 0.00 5.36
4396 9364 0.947244 AAGCAAAGCAGAGTTGGTCG 59.053 50.000 0.00 0.00 35.73 4.79
4398 9366 1.576421 CAAAGCAGAGTTGGTCGCC 59.424 57.895 0.00 0.00 32.95 5.54
4405 9373 0.904649 AGAGTTGGTCGCCATCATGA 59.095 50.000 0.00 0.00 31.53 3.07
4406 9374 1.134580 AGAGTTGGTCGCCATCATGAG 60.135 52.381 0.09 0.00 31.53 2.90
4407 9375 0.745845 AGTTGGTCGCCATCATGAGC 60.746 55.000 0.09 0.00 31.53 4.26
4408 9376 1.026182 GTTGGTCGCCATCATGAGCA 61.026 55.000 0.09 0.00 40.52 4.26
4409 9377 0.107066 TTGGTCGCCATCATGAGCAT 60.107 50.000 0.09 0.00 41.67 3.79
4410 9378 0.816421 TGGTCGCCATCATGAGCATG 60.816 55.000 0.09 4.10 37.66 4.06
4426 9394 2.027745 AGCATGACACCAACGAAGATCT 60.028 45.455 0.00 0.00 0.00 2.75
4454 9422 0.899720 AATGAATGTTGGCAGGCAGG 59.100 50.000 0.00 0.00 0.00 4.85
4455 9423 1.610554 ATGAATGTTGGCAGGCAGGC 61.611 55.000 0.00 0.00 44.50 4.85
4468 9436 1.139095 GCAGGCAAGCAAGCAGATC 59.861 57.895 2.78 0.00 35.83 2.75
4475 9451 2.936114 GCAAGCAAGCAGATCTCACTCT 60.936 50.000 0.00 0.00 0.00 3.24
4476 9452 3.336468 CAAGCAAGCAGATCTCACTCTT 58.664 45.455 0.00 0.00 0.00 2.85
4477 9453 2.975266 AGCAAGCAGATCTCACTCTTG 58.025 47.619 14.45 14.45 37.70 3.02
4478 9454 2.302445 AGCAAGCAGATCTCACTCTTGT 59.698 45.455 17.58 8.06 37.17 3.16
4479 9455 2.415857 GCAAGCAGATCTCACTCTTGTG 59.584 50.000 17.58 6.45 45.07 3.33
4480 9456 2.383368 AGCAGATCTCACTCTTGTGC 57.617 50.000 0.00 0.00 43.49 4.57
4481 9457 1.901159 AGCAGATCTCACTCTTGTGCT 59.099 47.619 0.00 0.00 43.49 4.40
4499 9484 3.076621 TGCTGCTGTAGGACATTCTTTG 58.923 45.455 0.00 0.00 0.00 2.77
4500 9485 2.421424 GCTGCTGTAGGACATTCTTTGG 59.579 50.000 0.00 0.00 0.00 3.28
4502 9487 3.411446 TGCTGTAGGACATTCTTTGGTG 58.589 45.455 0.00 0.00 0.00 4.17
4537 9548 1.805943 TGGAACACAGCACAATCGATG 59.194 47.619 0.00 0.00 0.00 3.84
4542 9553 0.654160 ACAGCACAATCGATGCGATG 59.346 50.000 0.00 2.01 46.30 3.84
4543 9554 0.654160 CAGCACAATCGATGCGATGT 59.346 50.000 0.00 0.00 46.30 3.06
4549 9560 4.026062 GCACAATCGATGCGATGTTACTAA 60.026 41.667 0.00 0.00 46.30 2.24
4551 9562 6.292129 CACAATCGATGCGATGTTACTAATC 58.708 40.000 0.00 0.00 46.30 1.75
4552 9563 5.405571 ACAATCGATGCGATGTTACTAATCC 59.594 40.000 0.00 0.00 46.30 3.01
4554 9565 4.546570 TCGATGCGATGTTACTAATCCTG 58.453 43.478 0.00 0.00 0.00 3.86
4555 9566 4.277423 TCGATGCGATGTTACTAATCCTGA 59.723 41.667 0.00 0.00 0.00 3.86
4556 9567 4.982295 CGATGCGATGTTACTAATCCTGAA 59.018 41.667 0.00 0.00 0.00 3.02
4559 9570 5.972935 TGCGATGTTACTAATCCTGAAGAA 58.027 37.500 0.00 0.00 0.00 2.52
4563 9574 7.043059 GCGATGTTACTAATCCTGAAGAAGAAG 60.043 40.741 0.00 0.00 0.00 2.85
4564 9575 8.191446 CGATGTTACTAATCCTGAAGAAGAAGA 58.809 37.037 0.00 0.00 0.00 2.87
4565 9576 9.877178 GATGTTACTAATCCTGAAGAAGAAGAA 57.123 33.333 0.00 0.00 0.00 2.52
4566 9577 9.883142 ATGTTACTAATCCTGAAGAAGAAGAAG 57.117 33.333 0.00 0.00 0.00 2.85
4567 9578 9.090103 TGTTACTAATCCTGAAGAAGAAGAAGA 57.910 33.333 0.00 0.00 0.00 2.87
4568 9579 9.930693 GTTACTAATCCTGAAGAAGAAGAAGAA 57.069 33.333 0.00 0.00 0.00 2.52
4570 9581 8.429237 ACTAATCCTGAAGAAGAAGAAGAAGA 57.571 34.615 0.00 0.00 0.00 2.87
4630 9670 0.178929 CTAGGCTAGGGGTAGGGGTG 60.179 65.000 13.92 0.00 0.00 4.61
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
50 4070 6.801575 TGGCGAACTCTTGTTTTATTTTCTT 58.198 32.000 0.00 0.00 36.39 2.52
51 4071 6.385649 TGGCGAACTCTTGTTTTATTTTCT 57.614 33.333 0.00 0.00 36.39 2.52
52 4072 5.629435 CCTGGCGAACTCTTGTTTTATTTTC 59.371 40.000 0.00 0.00 36.39 2.29
57 4077 3.478857 TCCTGGCGAACTCTTGTTTTA 57.521 42.857 0.00 0.00 36.39 1.52
70 4090 1.200020 GTTGTCTGGATTTTCCTGGCG 59.800 52.381 0.00 0.00 42.21 5.69
81 4101 3.805422 GTGTAACACATTCGTTGTCTGGA 59.195 43.478 0.00 0.00 36.00 3.86
123 4143 2.103094 GCTTTTCCTGGCCAACTCTTTT 59.897 45.455 7.01 0.00 0.00 2.27
124 4144 1.688735 GCTTTTCCTGGCCAACTCTTT 59.311 47.619 7.01 0.00 0.00 2.52
135 4155 0.603707 TCGCTGTCTGGCTTTTCCTG 60.604 55.000 0.00 0.00 35.26 3.86
156 4176 4.899239 GTCGGATGGCTGGAGGCG 62.899 72.222 0.00 0.00 44.42 5.52
187 4207 0.251121 TCCCACGCATTCCAACACAT 60.251 50.000 0.00 0.00 0.00 3.21
196 4216 0.825410 TATACACCGTCCCACGCATT 59.175 50.000 0.00 0.00 40.91 3.56
197 4217 0.387929 CTATACACCGTCCCACGCAT 59.612 55.000 0.00 0.00 40.91 4.73
204 4224 1.604693 CGAATGCCCTATACACCGTCC 60.605 57.143 0.00 0.00 0.00 4.79
205 4225 1.779569 CGAATGCCCTATACACCGTC 58.220 55.000 0.00 0.00 0.00 4.79
206 4226 0.249741 GCGAATGCCCTATACACCGT 60.250 55.000 0.00 0.00 33.98 4.83
207 4227 0.033504 AGCGAATGCCCTATACACCG 59.966 55.000 0.00 0.00 44.31 4.94
208 4228 2.353803 CCTAGCGAATGCCCTATACACC 60.354 54.545 0.00 0.00 44.31 4.16
209 4229 2.353803 CCCTAGCGAATGCCCTATACAC 60.354 54.545 0.00 0.00 44.31 2.90
210 4230 1.899814 CCCTAGCGAATGCCCTATACA 59.100 52.381 0.00 0.00 44.31 2.29
211 4231 1.900486 ACCCTAGCGAATGCCCTATAC 59.100 52.381 0.00 0.00 44.31 1.47
212 4232 2.176889 GACCCTAGCGAATGCCCTATA 58.823 52.381 0.00 0.00 44.31 1.31
213 4233 0.977395 GACCCTAGCGAATGCCCTAT 59.023 55.000 0.00 0.00 44.31 2.57
214 4234 1.461091 CGACCCTAGCGAATGCCCTA 61.461 60.000 0.00 0.00 44.31 3.53
215 4235 2.797278 CGACCCTAGCGAATGCCCT 61.797 63.158 0.00 0.00 44.31 5.19
216 4236 2.280186 CGACCCTAGCGAATGCCC 60.280 66.667 0.00 0.00 44.31 5.36
217 4237 2.967615 GCGACCCTAGCGAATGCC 60.968 66.667 0.00 0.00 44.31 4.40
253 4273 9.516314 GAAATCTTCTTCCAAAATTATAACCGG 57.484 33.333 0.00 0.00 0.00 5.28
267 4287 5.728898 GCATGACGTGATGAAATCTTCTTCC 60.729 44.000 19.66 0.00 45.81 3.46
285 4305 2.035961 TCCGCCTAGTTATGAGCATGAC 59.964 50.000 0.00 0.00 0.00 3.06
314 4334 5.413499 ACAACATACACCAACGGATACTAC 58.587 41.667 0.00 0.00 0.00 2.73
322 4342 5.143660 CACATGTAACAACATACACCAACG 58.856 41.667 0.00 0.00 38.53 4.10
327 4347 5.933187 TGGACACATGTAACAACATACAC 57.067 39.130 0.00 0.00 38.53 2.90
370 4390 8.166061 CCTCTCCATCCAATATCATTAAAAGGA 58.834 37.037 0.00 0.00 0.00 3.36
371 4391 8.166061 TCCTCTCCATCCAATATCATTAAAAGG 58.834 37.037 0.00 0.00 0.00 3.11
378 4398 4.477581 CCCATCCTCTCCATCCAATATCAT 59.522 45.833 0.00 0.00 0.00 2.45
381 4401 4.110072 CTCCCATCCTCTCCATCCAATAT 58.890 47.826 0.00 0.00 0.00 1.28
382 4402 3.524826 CTCCCATCCTCTCCATCCAATA 58.475 50.000 0.00 0.00 0.00 1.90
414 4434 2.031683 CGTTCGGTTTTGGGCATATCTC 59.968 50.000 0.00 0.00 0.00 2.75
417 4437 1.470890 CACGTTCGGTTTTGGGCATAT 59.529 47.619 0.00 0.00 0.00 1.78
421 4441 0.593008 GAACACGTTCGGTTTTGGGC 60.593 55.000 0.00 0.00 0.00 5.36
424 4444 1.858399 GCTGGAACACGTTCGGTTTTG 60.858 52.381 3.95 0.00 40.37 2.44
425 4445 0.379316 GCTGGAACACGTTCGGTTTT 59.621 50.000 3.95 0.00 40.37 2.43
439 4931 4.069232 CGGAGCTGGTTCGCTGGA 62.069 66.667 0.00 0.00 41.08 3.86
461 4987 2.169789 CGAAGCCATGCCGTCTCTG 61.170 63.158 0.00 0.00 0.00 3.35
479 5005 0.602905 CTCCGTCCGGCCATTTATCC 60.603 60.000 2.24 0.00 34.68 2.59
482 5008 1.555477 AACCTCCGTCCGGCCATTTA 61.555 55.000 2.24 0.00 34.68 1.40
515 5052 0.386352 TCCATGTTGTCGTCGTCGTC 60.386 55.000 1.33 0.00 38.33 4.20
517 5054 2.109463 CTATCCATGTTGTCGTCGTCG 58.891 52.381 0.00 0.00 38.55 5.12
523 5060 4.330074 GTGAGAAACCTATCCATGTTGTCG 59.670 45.833 0.00 0.00 0.00 4.35
524 5061 5.491982 AGTGAGAAACCTATCCATGTTGTC 58.508 41.667 0.00 0.00 0.00 3.18
525 5062 5.505181 AGTGAGAAACCTATCCATGTTGT 57.495 39.130 0.00 0.00 0.00 3.32
526 5063 5.707298 ACAAGTGAGAAACCTATCCATGTTG 59.293 40.000 0.00 0.00 0.00 3.33
527 5064 5.880901 ACAAGTGAGAAACCTATCCATGTT 58.119 37.500 0.00 0.00 0.00 2.71
536 5073 4.855340 TCTCCAAAACAAGTGAGAAACCT 58.145 39.130 0.00 0.00 31.26 3.50
549 5086 3.198872 GAGATCGACCCATCTCCAAAAC 58.801 50.000 2.87 0.00 42.15 2.43
640 5183 9.890629 GCCCCTCATTTCTTCTTTTATTTATTT 57.109 29.630 0.00 0.00 0.00 1.40
641 5184 8.486210 GGCCCCTCATTTCTTCTTTTATTTATT 58.514 33.333 0.00 0.00 0.00 1.40
642 5185 7.846311 AGGCCCCTCATTTCTTCTTTTATTTAT 59.154 33.333 0.00 0.00 0.00 1.40
727 5284 1.016627 CACGCTCCTGAGAGAGAGAG 58.983 60.000 4.87 0.00 42.08 3.20
728 5285 1.029408 GCACGCTCCTGAGAGAGAGA 61.029 60.000 4.87 0.00 42.08 3.10
729 5286 1.031571 AGCACGCTCCTGAGAGAGAG 61.032 60.000 4.87 2.07 42.08 3.20
730 5287 1.001517 AGCACGCTCCTGAGAGAGA 60.002 57.895 4.87 0.00 42.08 3.10
731 5288 1.031571 AGAGCACGCTCCTGAGAGAG 61.032 60.000 15.28 0.00 43.39 3.20
732 5289 1.001517 AGAGCACGCTCCTGAGAGA 60.002 57.895 15.28 0.00 43.39 3.10
733 5290 1.031571 AGAGAGCACGCTCCTGAGAG 61.032 60.000 15.28 0.00 43.70 3.20
741 5298 1.135915 CCTAATCACAGAGAGCACGCT 59.864 52.381 0.00 0.00 0.00 5.07
782 5339 1.255667 TTCTCCTACCCACGCACCTC 61.256 60.000 0.00 0.00 0.00 3.85
802 5365 2.287608 CGGCCGCTCTTTCTTTTCTTTT 60.288 45.455 14.67 0.00 0.00 2.27
803 5366 1.266989 CGGCCGCTCTTTCTTTTCTTT 59.733 47.619 14.67 0.00 0.00 2.52
804 5367 0.875059 CGGCCGCTCTTTCTTTTCTT 59.125 50.000 14.67 0.00 0.00 2.52
805 5368 1.578206 GCGGCCGCTCTTTCTTTTCT 61.578 55.000 41.71 0.00 38.26 2.52
806 5369 1.154207 GCGGCCGCTCTTTCTTTTC 60.154 57.895 41.71 9.25 38.26 2.29
845 5410 2.034221 GCCGCACCTTTCTTCCCT 59.966 61.111 0.00 0.00 0.00 4.20
846 5411 3.062466 GGCCGCACCTTTCTTCCC 61.062 66.667 0.00 0.00 34.51 3.97
950 5530 0.601311 GAAATGGCGATCGGGGAGAG 60.601 60.000 18.30 0.00 0.00 3.20
1062 5642 3.103911 GTGGAGTGGAACGACGCG 61.104 66.667 3.53 3.53 45.86 6.01
1115 5695 1.177401 GGGGAGATTGACCTTGCAAC 58.823 55.000 0.00 0.00 0.00 4.17
1142 5733 1.284785 TCCAAGTAGCTGGAAATGGGG 59.715 52.381 0.00 0.00 42.69 4.96
1155 5746 5.083122 TGAGGCAAAATCCAAATCCAAGTA 58.917 37.500 0.00 0.00 0.00 2.24
1157 5748 4.020839 ACTGAGGCAAAATCCAAATCCAAG 60.021 41.667 0.00 0.00 0.00 3.61
1159 5750 3.509442 ACTGAGGCAAAATCCAAATCCA 58.491 40.909 0.00 0.00 0.00 3.41
1160 5751 4.098501 CCTACTGAGGCAAAATCCAAATCC 59.901 45.833 0.00 0.00 35.54 3.01
1161 5752 5.254339 CCTACTGAGGCAAAATCCAAATC 57.746 43.478 0.00 0.00 35.54 2.17
1195 5800 3.931907 TCCATCCCTGATTAACCACAG 57.068 47.619 0.00 0.00 0.00 3.66
1206 5820 9.586435 GAAAAATAACAGTATTTTCCATCCCTG 57.414 33.333 5.23 0.00 45.20 4.45
1248 5899 2.862541 ACAGCTTGCAATTGGACAGTA 58.137 42.857 7.72 0.00 0.00 2.74
1254 5905 5.824904 AATCTACTACAGCTTGCAATTGG 57.175 39.130 7.72 0.00 0.00 3.16
1261 5912 6.276091 TGTGCATCTAATCTACTACAGCTTG 58.724 40.000 0.00 0.00 0.00 4.01
1271 5922 6.585416 TCTGCTGAAATGTGCATCTAATCTA 58.415 36.000 0.00 0.00 38.59 1.98
1272 5923 5.434408 TCTGCTGAAATGTGCATCTAATCT 58.566 37.500 0.00 0.00 38.59 2.40
1273 5924 5.746307 TCTGCTGAAATGTGCATCTAATC 57.254 39.130 0.00 0.00 38.59 1.75
1274 5925 7.222161 TCTATCTGCTGAAATGTGCATCTAAT 58.778 34.615 0.00 0.00 38.59 1.73
1275 5926 6.585416 TCTATCTGCTGAAATGTGCATCTAA 58.415 36.000 0.00 0.00 38.59 2.10
1292 5943 1.880271 CTGCCAGCACCATCTATCTG 58.120 55.000 0.00 0.00 0.00 2.90
1309 5960 3.426426 GCAGAAGAAGAAATCAGCAGCTG 60.426 47.826 17.10 17.10 0.00 4.24
1312 5963 4.023450 TGTTGCAGAAGAAGAAATCAGCAG 60.023 41.667 0.00 0.00 31.87 4.24
1321 5972 7.995289 TCAAAACTATTTGTTGCAGAAGAAGA 58.005 30.769 1.69 0.00 45.02 2.87
1322 5973 7.917505 ACTCAAAACTATTTGTTGCAGAAGAAG 59.082 33.333 1.69 0.00 45.02 2.85
1323 5974 7.771183 ACTCAAAACTATTTGTTGCAGAAGAA 58.229 30.769 1.69 0.00 45.02 2.52
1329 5980 6.272318 CCAGAACTCAAAACTATTTGTTGCA 58.728 36.000 1.69 0.00 45.02 4.08
1353 6004 1.523938 GTGCCCGGATGCTTAGTCC 60.524 63.158 0.73 0.00 0.00 3.85
1368 6019 1.278238 CGTCCACCTAGAATTCGTGC 58.722 55.000 0.00 0.00 0.00 5.34
1372 6023 0.539986 TGCCCGTCCACCTAGAATTC 59.460 55.000 0.00 0.00 0.00 2.17
1373 6024 0.252197 GTGCCCGTCCACCTAGAATT 59.748 55.000 0.00 0.00 0.00 2.17
1407 6058 3.524095 AGTTTGTGGTCCATGATCCAA 57.476 42.857 9.72 0.00 35.38 3.53
1410 6061 4.761739 TCAAGAAGTTTGTGGTCCATGATC 59.238 41.667 0.00 0.00 0.00 2.92
1435 6086 2.823829 GCATCGGCCGACACCAATC 61.824 63.158 33.75 10.51 0.00 2.67
1436 6087 2.824041 GCATCGGCCGACACCAAT 60.824 61.111 33.75 11.17 0.00 3.16
1437 6088 3.620419 ATGCATCGGCCGACACCAA 62.620 57.895 33.75 15.19 40.13 3.67
1442 6093 2.322999 GAAACCATGCATCGGCCGAC 62.323 60.000 33.75 20.13 40.13 4.79
1506 6157 2.925162 GGACACCCCAGATGCGTAGC 62.925 65.000 0.00 0.00 45.70 3.58
1507 6158 1.144057 GGACACCCCAGATGCGTAG 59.856 63.158 0.00 0.00 34.14 3.51
1508 6159 0.907704 AAGGACACCCCAGATGCGTA 60.908 55.000 0.00 0.00 37.41 4.42
1509 6160 0.907704 TAAGGACACCCCAGATGCGT 60.908 55.000 0.00 0.00 37.41 5.24
1510 6161 0.251916 TTAAGGACACCCCAGATGCG 59.748 55.000 0.00 0.00 37.41 4.73
1511 6162 1.682087 GGTTAAGGACACCCCAGATGC 60.682 57.143 0.00 0.00 37.41 3.91
1527 6178 3.505680 CAGCACAGCAGGTTAATTGGTTA 59.494 43.478 0.00 0.00 0.00 2.85
1563 6214 8.547967 TTTACAGGCTAGAACTAGTTGAAATG 57.452 34.615 14.14 6.71 35.65 2.32
1593 6244 1.337703 CAAATGTGCATGTATCGGGGG 59.662 52.381 0.00 0.00 0.00 5.40
1597 6248 2.847959 TGCCAAATGTGCATGTATCG 57.152 45.000 0.00 0.00 32.85 2.92
1634 6285 5.768980 AGCATATGCATAACCCTACTGAT 57.231 39.130 28.62 0.00 45.16 2.90
1637 6288 6.837312 TGTAAAGCATATGCATAACCCTACT 58.163 36.000 28.62 1.58 45.16 2.57
1648 6299 8.471457 CGATGTTGTTATTTGTAAAGCATATGC 58.529 33.333 20.36 20.36 42.49 3.14
1663 6314 3.935203 CTGAACAGGAGCGATGTTGTTAT 59.065 43.478 8.64 0.00 40.86 1.89
1665 6316 2.146342 CTGAACAGGAGCGATGTTGTT 58.854 47.619 8.64 0.00 40.86 2.83
1692 6343 7.650890 CATGCAAGCTACACATATATGGAAAA 58.349 34.615 16.96 0.00 0.00 2.29
1694 6345 5.181811 GCATGCAAGCTACACATATATGGAA 59.818 40.000 14.21 1.30 0.00 3.53
1695 6346 4.696877 GCATGCAAGCTACACATATATGGA 59.303 41.667 14.21 1.40 0.00 3.41
1696 6347 4.698780 AGCATGCAAGCTACACATATATGG 59.301 41.667 21.98 8.37 44.50 2.74
1697 6348 5.410439 TCAGCATGCAAGCTACACATATATG 59.590 40.000 21.98 11.29 44.54 1.78
1698 6349 5.410746 GTCAGCATGCAAGCTACACATATAT 59.589 40.000 21.98 0.00 44.54 0.86
1699 6350 4.751600 GTCAGCATGCAAGCTACACATATA 59.248 41.667 21.98 0.00 44.54 0.86
1700 6351 3.562973 GTCAGCATGCAAGCTACACATAT 59.437 43.478 21.98 0.00 44.54 1.78
1701 6352 2.938451 GTCAGCATGCAAGCTACACATA 59.062 45.455 21.98 0.00 44.54 2.29
1702 6353 1.741706 GTCAGCATGCAAGCTACACAT 59.258 47.619 21.98 0.00 44.54 3.21
1703 6354 1.159285 GTCAGCATGCAAGCTACACA 58.841 50.000 21.98 0.00 44.54 3.72
1704 6355 1.135859 GTGTCAGCATGCAAGCTACAC 60.136 52.381 25.79 25.79 44.54 2.90
1705 6356 1.159285 GTGTCAGCATGCAAGCTACA 58.841 50.000 21.98 16.91 44.54 2.74
1706 6357 1.446907 AGTGTCAGCATGCAAGCTAC 58.553 50.000 21.98 11.53 44.54 3.58
1707 6358 2.028203 TGTAGTGTCAGCATGCAAGCTA 60.028 45.455 21.98 11.29 44.54 3.32
1709 6360 1.159285 TGTAGTGTCAGCATGCAAGC 58.841 50.000 21.98 5.62 34.76 4.01
1710 6361 4.083164 TGAATTGTAGTGTCAGCATGCAAG 60.083 41.667 21.98 12.28 34.76 4.01
1711 6362 3.819902 TGAATTGTAGTGTCAGCATGCAA 59.180 39.130 21.98 4.32 34.76 4.08
1712 6363 3.410508 TGAATTGTAGTGTCAGCATGCA 58.589 40.909 21.98 0.00 34.76 3.96
1713 6364 4.627611 ATGAATTGTAGTGTCAGCATGC 57.372 40.909 10.51 10.51 34.76 4.06
1714 6365 6.255950 CAGAATGAATTGTAGTGTCAGCATG 58.744 40.000 0.00 0.00 39.69 4.06
1715 6366 5.163683 GCAGAATGAATTGTAGTGTCAGCAT 60.164 40.000 0.00 0.00 39.69 3.79
1716 6367 4.154737 GCAGAATGAATTGTAGTGTCAGCA 59.845 41.667 0.00 0.00 39.69 4.41
1717 6368 4.154737 TGCAGAATGAATTGTAGTGTCAGC 59.845 41.667 0.00 0.00 39.69 4.26
1718 6369 5.673068 GCTGCAGAATGAATTGTAGTGTCAG 60.673 44.000 20.43 0.00 39.69 3.51
1719 6370 4.154737 GCTGCAGAATGAATTGTAGTGTCA 59.845 41.667 20.43 0.00 39.69 3.58
1720 6371 4.154737 TGCTGCAGAATGAATTGTAGTGTC 59.845 41.667 20.43 0.00 39.69 3.67
1721 6372 4.074259 TGCTGCAGAATGAATTGTAGTGT 58.926 39.130 20.43 0.00 39.69 3.55
1722 6373 4.690184 TGCTGCAGAATGAATTGTAGTG 57.310 40.909 20.43 0.00 39.69 2.74
1723 6374 4.945543 TCATGCTGCAGAATGAATTGTAGT 59.054 37.500 31.49 0.00 37.16 2.73
1724 6375 5.494632 TCATGCTGCAGAATGAATTGTAG 57.505 39.130 31.49 6.48 37.16 2.74
1725 6376 5.900865 TTCATGCTGCAGAATGAATTGTA 57.099 34.783 36.42 20.90 43.32 2.41
1726 6377 4.794278 TTCATGCTGCAGAATGAATTGT 57.206 36.364 36.42 0.56 43.32 2.71
1730 6381 3.119280 CCATGTTCATGCTGCAGAATGAA 60.119 43.478 36.42 36.42 45.34 2.57
1731 6382 2.425668 CCATGTTCATGCTGCAGAATGA 59.574 45.455 30.25 30.25 39.69 2.57
1732 6383 2.425668 TCCATGTTCATGCTGCAGAATG 59.574 45.455 26.63 26.63 40.87 2.67
1733 6384 2.688446 CTCCATGTTCATGCTGCAGAAT 59.312 45.455 20.43 10.50 0.00 2.40
1734 6385 2.089201 CTCCATGTTCATGCTGCAGAA 58.911 47.619 20.43 7.68 0.00 3.02
1735 6386 1.279846 TCTCCATGTTCATGCTGCAGA 59.720 47.619 20.43 2.70 0.00 4.26
1736 6387 1.746470 TCTCCATGTTCATGCTGCAG 58.254 50.000 10.11 10.11 0.00 4.41
1776 6427 3.106054 AGAGAGAGATGTGTCAAGGCAT 58.894 45.455 0.00 0.00 0.00 4.40
1777 6428 2.495270 GAGAGAGAGATGTGTCAAGGCA 59.505 50.000 0.00 0.00 0.00 4.75
1778 6429 2.760092 AGAGAGAGAGATGTGTCAAGGC 59.240 50.000 0.00 0.00 0.00 4.35
1779 6430 4.015764 TGAGAGAGAGAGATGTGTCAAGG 58.984 47.826 0.00 0.00 0.00 3.61
1781 6432 3.443329 GCTGAGAGAGAGAGATGTGTCAA 59.557 47.826 0.00 0.00 0.00 3.18
1782 6433 3.016031 GCTGAGAGAGAGAGATGTGTCA 58.984 50.000 0.00 0.00 0.00 3.58
1783 6434 3.065786 CAGCTGAGAGAGAGAGATGTGTC 59.934 52.174 8.42 0.00 0.00 3.67
1787 6438 5.766670 AGATTACAGCTGAGAGAGAGAGATG 59.233 44.000 23.35 0.00 0.00 2.90
1788 6439 5.766670 CAGATTACAGCTGAGAGAGAGAGAT 59.233 44.000 23.35 0.00 35.39 2.75
1789 6440 5.125356 CAGATTACAGCTGAGAGAGAGAGA 58.875 45.833 23.35 0.00 35.39 3.10
1790 6441 4.276678 CCAGATTACAGCTGAGAGAGAGAG 59.723 50.000 23.35 1.43 35.39 3.20
1791 6442 4.080072 TCCAGATTACAGCTGAGAGAGAGA 60.080 45.833 23.35 6.65 35.39 3.10
1792 6443 4.036734 GTCCAGATTACAGCTGAGAGAGAG 59.963 50.000 23.35 4.17 35.39 3.20
1793 6444 3.951037 GTCCAGATTACAGCTGAGAGAGA 59.049 47.826 23.35 5.16 35.39 3.10
1794 6445 3.953612 AGTCCAGATTACAGCTGAGAGAG 59.046 47.826 23.35 5.31 35.39 3.20
1813 6464 1.202879 TGGTCATGTTCCCAACCAGTC 60.203 52.381 0.00 0.00 36.88 3.51
1819 6470 0.178975 GGTGGTGGTCATGTTCCCAA 60.179 55.000 3.63 0.00 31.17 4.12
1831 6482 6.998074 AGTATGTATGACATTAATGGTGGTGG 59.002 38.462 19.37 0.00 39.88 4.61
1832 6483 8.344831 CAAGTATGTATGACATTAATGGTGGTG 58.655 37.037 19.37 0.00 39.88 4.17
1833 6484 8.271458 TCAAGTATGTATGACATTAATGGTGGT 58.729 33.333 19.37 5.47 39.88 4.16
1834 6485 8.675705 TCAAGTATGTATGACATTAATGGTGG 57.324 34.615 19.37 0.00 39.88 4.61
1849 6500 7.582667 TGAGCTACTATGCTTCAAGTATGTA 57.417 36.000 0.00 0.00 44.17 2.29
1864 6515 3.887621 AACCGCTGATTTGAGCTACTA 57.112 42.857 0.00 0.00 36.77 1.82
1876 6527 1.810151 GGCATGAAGTTAAACCGCTGA 59.190 47.619 0.00 0.00 0.00 4.26
1881 6532 4.584327 ACAACAGGCATGAAGTTAAACC 57.416 40.909 4.84 0.00 0.00 3.27
1899 6550 7.178628 AGTTACTGACTATCTTCCAAGCTACAA 59.821 37.037 0.00 0.00 36.65 2.41
1902 6553 7.012138 CGTAGTTACTGACTATCTTCCAAGCTA 59.988 40.741 0.00 0.00 42.57 3.32
1904 6555 5.972382 CGTAGTTACTGACTATCTTCCAAGC 59.028 44.000 0.00 0.00 42.57 4.01
1909 6560 6.315891 ACTGACCGTAGTTACTGACTATCTTC 59.684 42.308 0.00 0.00 42.57 2.87
1927 6579 5.008331 TCCCTGCTATTACTATACTGACCG 58.992 45.833 0.00 0.00 0.00 4.79
1990 6642 4.934356 AGCACCCTGAGGAAAATATCAAA 58.066 39.130 0.00 0.00 36.73 2.69
2027 6680 5.068636 CCATTACCAAGAGCTCTATGCAAT 58.931 41.667 18.59 10.48 45.94 3.56
2153 6806 6.155827 GCTACTAAACACATGGCAATGAAAA 58.844 36.000 8.45 0.00 37.24 2.29
2159 6812 3.147553 TGGCTACTAAACACATGGCAA 57.852 42.857 0.00 0.00 0.00 4.52
2269 6922 6.183360 TGTCGAATGCTACCTAAGTACCTAAC 60.183 42.308 0.00 0.00 0.00 2.34
2274 6927 6.534079 ACAATTGTCGAATGCTACCTAAGTAC 59.466 38.462 4.92 0.00 0.00 2.73
2275 6928 6.533723 CACAATTGTCGAATGCTACCTAAGTA 59.466 38.462 8.48 0.00 0.00 2.24
2276 6929 5.351465 CACAATTGTCGAATGCTACCTAAGT 59.649 40.000 8.48 0.00 0.00 2.24
2277 6930 5.580691 TCACAATTGTCGAATGCTACCTAAG 59.419 40.000 8.48 0.00 0.00 2.18
2278 6931 5.483811 TCACAATTGTCGAATGCTACCTAA 58.516 37.500 8.48 0.00 0.00 2.69
2279 6932 5.079689 TCACAATTGTCGAATGCTACCTA 57.920 39.130 8.48 0.00 0.00 3.08
2280 6933 3.937814 TCACAATTGTCGAATGCTACCT 58.062 40.909 8.48 0.00 0.00 3.08
2281 6934 4.882671 ATCACAATTGTCGAATGCTACC 57.117 40.909 8.48 0.00 0.00 3.18
2326 6981 6.074409 CGCTCATATTTCTGTTGAAGAGCTAG 60.074 42.308 0.00 0.00 41.04 3.42
2329 6984 4.568359 TCGCTCATATTTCTGTTGAAGAGC 59.432 41.667 0.00 0.00 40.42 4.09
2395 7050 8.792633 TGACTTTCCATACAGAAGGTAATTTTG 58.207 33.333 0.00 0.00 36.33 2.44
2434 7089 5.805994 ACGACTCGAATAGAAATTTCACCTC 59.194 40.000 19.99 11.11 0.00 3.85
2456 7111 7.066284 AGGAAGGATAAGAATGTTCAAATGACG 59.934 37.037 0.00 0.00 0.00 4.35
2483 7138 3.536956 TTGCCTTAGTTATCCCAGTCG 57.463 47.619 0.00 0.00 0.00 4.18
2543 7205 7.093377 ACACAAGCAATAATAAATGGATGGTGT 60.093 33.333 0.00 0.00 0.00 4.16
2866 7528 2.683933 GCCCTCGGAACTCCTCCA 60.684 66.667 0.00 0.00 45.74 3.86
2949 7611 2.154462 ACACTGTCATTAAGCCAGCAC 58.846 47.619 0.00 0.00 0.00 4.40
2950 7612 2.566833 ACACTGTCATTAAGCCAGCA 57.433 45.000 0.00 0.00 0.00 4.41
2951 7613 3.923017 AAACACTGTCATTAAGCCAGC 57.077 42.857 0.00 0.00 0.00 4.85
2952 7614 5.186996 ACAAAACACTGTCATTAAGCCAG 57.813 39.130 0.00 0.00 0.00 4.85
2953 7615 5.126222 TCAACAAAACACTGTCATTAAGCCA 59.874 36.000 0.00 0.00 0.00 4.75
2954 7616 5.587289 TCAACAAAACACTGTCATTAAGCC 58.413 37.500 0.00 0.00 0.00 4.35
3180 7842 2.673368 GGTAAAACTCTGGTGATGCTCG 59.327 50.000 0.00 0.00 0.00 5.03
3237 7899 3.009723 TCTGAATCCAAACGATGAAGCC 58.990 45.455 0.00 0.00 0.00 4.35
3457 8122 1.444119 GCAACGGTGGCAGAGACAAA 61.444 55.000 0.90 0.00 0.00 2.83
3514 8179 3.338249 GGAAGCTGCACAGAGTAAATCA 58.662 45.455 1.02 0.00 0.00 2.57
3624 8294 4.511454 TGAACTAGTGTTGCATCTGTTGTC 59.489 41.667 0.00 0.00 36.39 3.18
3659 8329 6.195244 GCATATGTGTTTTCGCAAGTTGATAG 59.805 38.462 7.16 0.00 43.76 2.08
3730 8400 1.919240 TGAACTTCTCCTCGGCTACA 58.081 50.000 0.00 0.00 0.00 2.74
3790 8460 2.469516 GGGTTATCACGCGGCCTTG 61.470 63.158 12.47 0.00 0.00 3.61
3806 8476 3.382832 ACGCGTGGAGGAAGAGGG 61.383 66.667 12.93 0.00 0.00 4.30
3837 8511 1.002366 GGTGCTGATAGCGTTCACAG 58.998 55.000 0.00 0.00 46.26 3.66
3894 8582 0.179936 CTCCCTGCCAGAGATGGAAC 59.820 60.000 0.00 0.00 32.86 3.62
3895 8583 0.252881 ACTCCCTGCCAGAGATGGAA 60.253 55.000 0.00 0.00 35.27 3.53
3896 8584 0.252881 AACTCCCTGCCAGAGATGGA 60.253 55.000 0.00 0.00 35.27 3.41
3897 8585 0.107312 CAACTCCCTGCCAGAGATGG 60.107 60.000 0.00 0.00 35.27 3.51
3898 8586 0.107312 CCAACTCCCTGCCAGAGATG 60.107 60.000 0.00 0.91 34.79 2.90
3905 8593 4.432741 GAGCCCCAACTCCCTGCC 62.433 72.222 0.00 0.00 0.00 4.85
3933 8629 0.753848 GCGGGGAAGAGAGCTCTAGT 60.754 60.000 18.25 7.35 39.39 2.57
3983 8683 7.667219 TGGCTCAAATCTCTAGTGAAAGAAAAT 59.333 33.333 0.00 0.00 0.00 1.82
4077 8777 1.083489 TACAGCTTGCAATGGTACGC 58.917 50.000 0.00 0.00 0.00 4.42
4079 8779 4.226761 GTTGTTACAGCTTGCAATGGTAC 58.773 43.478 0.00 0.05 0.00 3.34
4127 8828 2.629051 CCCCTGTCGAAACCAAGATAC 58.371 52.381 0.00 0.00 0.00 2.24
4129 8830 0.328258 CCCCCTGTCGAAACCAAGAT 59.672 55.000 0.00 0.00 0.00 2.40
4130 8831 0.765135 TCCCCCTGTCGAAACCAAGA 60.765 55.000 0.00 0.00 0.00 3.02
4131 8832 0.109723 TTCCCCCTGTCGAAACCAAG 59.890 55.000 0.00 0.00 0.00 3.61
4132 8833 0.774908 ATTCCCCCTGTCGAAACCAA 59.225 50.000 0.00 0.00 0.00 3.67
4133 8834 1.659022 TATTCCCCCTGTCGAAACCA 58.341 50.000 0.00 0.00 0.00 3.67
4134 8835 2.793288 TTATTCCCCCTGTCGAAACC 57.207 50.000 0.00 0.00 0.00 3.27
4135 8836 3.442625 CCTTTTATTCCCCCTGTCGAAAC 59.557 47.826 0.00 0.00 0.00 2.78
4142 8843 4.416516 ACAAGTTCCTTTTATTCCCCCTG 58.583 43.478 0.00 0.00 0.00 4.45
4148 8849 7.370383 TGCATTCAGACAAGTTCCTTTTATTC 58.630 34.615 0.00 0.00 0.00 1.75
4195 8896 6.527057 TCTAAGAGTACTAACAAGGAAGCC 57.473 41.667 0.00 0.00 0.00 4.35
4277 8997 4.100035 AGCAGTCTAGCAGTATAATGTGCA 59.900 41.667 11.97 0.00 42.47 4.57
4298 9019 0.027194 CGCATCACACATGCACTAGC 59.973 55.000 7.32 0.00 44.75 3.42
4300 9021 1.935199 CATCGCATCACACATGCACTA 59.065 47.619 7.32 0.00 44.75 2.74
4301 9022 0.730840 CATCGCATCACACATGCACT 59.269 50.000 7.32 0.00 44.75 4.40
4302 9023 0.448990 ACATCGCATCACACATGCAC 59.551 50.000 7.32 0.00 44.75 4.57
4303 9024 0.448593 CACATCGCATCACACATGCA 59.551 50.000 7.32 0.00 44.75 3.96
4304 9025 0.728542 TCACATCGCATCACACATGC 59.271 50.000 0.00 0.00 41.35 4.06
4305 9026 3.064271 TCAATCACATCGCATCACACATG 59.936 43.478 0.00 0.00 0.00 3.21
4328 9286 3.871006 TCATCATAACGCAACTGTCCATC 59.129 43.478 0.00 0.00 0.00 3.51
4330 9288 3.326836 TCATCATAACGCAACTGTCCA 57.673 42.857 0.00 0.00 0.00 4.02
4351 9309 5.768662 CACTCTGGCCTAATCATCAATCAAT 59.231 40.000 3.32 0.00 0.00 2.57
4352 9310 5.104402 TCACTCTGGCCTAATCATCAATCAA 60.104 40.000 3.32 0.00 0.00 2.57
4353 9311 4.409901 TCACTCTGGCCTAATCATCAATCA 59.590 41.667 3.32 0.00 0.00 2.57
4354 9312 4.965814 TCACTCTGGCCTAATCATCAATC 58.034 43.478 3.32 0.00 0.00 2.67
4370 9328 3.205784 ACTCTGCTTTGCTTTCACTCT 57.794 42.857 0.00 0.00 0.00 3.24
4405 9373 2.027745 AGATCTTCGTTGGTGTCATGCT 60.028 45.455 0.00 0.00 0.00 3.79
4406 9374 2.350522 AGATCTTCGTTGGTGTCATGC 58.649 47.619 0.00 0.00 0.00 4.06
4407 9375 4.452114 TCAAAGATCTTCGTTGGTGTCATG 59.548 41.667 8.78 0.00 36.68 3.07
4408 9376 4.452455 GTCAAAGATCTTCGTTGGTGTCAT 59.548 41.667 8.78 0.00 36.68 3.06
4409 9377 3.807622 GTCAAAGATCTTCGTTGGTGTCA 59.192 43.478 8.78 0.00 36.68 3.58
4410 9378 3.807622 TGTCAAAGATCTTCGTTGGTGTC 59.192 43.478 8.78 0.99 36.68 3.67
4411 9379 3.804036 TGTCAAAGATCTTCGTTGGTGT 58.196 40.909 8.78 0.00 36.68 4.16
4412 9380 5.362556 AATGTCAAAGATCTTCGTTGGTG 57.637 39.130 8.78 2.22 36.68 4.17
4413 9381 7.390440 TCATTAATGTCAAAGATCTTCGTTGGT 59.610 33.333 14.97 0.00 36.68 3.67
4454 9422 1.397692 GAGTGAGATCTGCTTGCTTGC 59.602 52.381 0.00 0.00 0.00 4.01
4455 9423 2.975266 AGAGTGAGATCTGCTTGCTTG 58.025 47.619 0.00 0.00 0.00 4.01
4456 9424 3.244491 ACAAGAGTGAGATCTGCTTGCTT 60.244 43.478 17.42 7.57 39.51 3.91
4457 9425 2.302445 ACAAGAGTGAGATCTGCTTGCT 59.698 45.455 17.42 3.56 39.51 3.91
4475 9451 2.038952 AGAATGTCCTACAGCAGCACAA 59.961 45.455 0.00 0.00 0.00 3.33
4476 9452 1.625315 AGAATGTCCTACAGCAGCACA 59.375 47.619 0.00 0.00 0.00 4.57
4477 9453 2.393271 AGAATGTCCTACAGCAGCAC 57.607 50.000 0.00 0.00 0.00 4.40
4478 9454 3.076621 CAAAGAATGTCCTACAGCAGCA 58.923 45.455 0.00 0.00 0.00 4.41
4479 9455 2.421424 CCAAAGAATGTCCTACAGCAGC 59.579 50.000 0.00 0.00 0.00 5.25
4480 9456 3.438087 CACCAAAGAATGTCCTACAGCAG 59.562 47.826 0.00 0.00 0.00 4.24
4481 9457 3.411446 CACCAAAGAATGTCCTACAGCA 58.589 45.455 0.00 0.00 0.00 4.41
4502 9487 1.135286 GTTCCACCATTAGCAAGCAGC 60.135 52.381 0.00 0.00 46.19 5.25
4537 9548 6.273825 TCTTCTTCAGGATTAGTAACATCGC 58.726 40.000 0.00 0.00 0.00 4.58
4542 9553 9.930693 TTCTTCTTCTTCTTCAGGATTAGTAAC 57.069 33.333 0.00 0.00 0.00 2.50
4549 9560 7.552050 TCTTCTTCTTCTTCTTCTTCAGGAT 57.448 36.000 0.00 0.00 0.00 3.24
4551 9562 7.441017 TCTTCTTCTTCTTCTTCTTCTTCAGG 58.559 38.462 0.00 0.00 0.00 3.86
4552 9563 8.885494 TTCTTCTTCTTCTTCTTCTTCTTCAG 57.115 34.615 0.00 0.00 0.00 3.02
4554 9565 7.440856 TGCTTCTTCTTCTTCTTCTTCTTCTTC 59.559 37.037 0.00 0.00 0.00 2.87
4555 9566 7.278875 TGCTTCTTCTTCTTCTTCTTCTTCTT 58.721 34.615 0.00 0.00 0.00 2.52
4556 9567 6.825610 TGCTTCTTCTTCTTCTTCTTCTTCT 58.174 36.000 0.00 0.00 0.00 2.85
4559 9570 6.267471 TCTCTGCTTCTTCTTCTTCTTCTTCT 59.733 38.462 0.00 0.00 0.00 2.85
4563 9574 5.047377 TCCTCTCTGCTTCTTCTTCTTCTTC 60.047 44.000 0.00 0.00 0.00 2.87
4564 9575 4.837860 TCCTCTCTGCTTCTTCTTCTTCTT 59.162 41.667 0.00 0.00 0.00 2.52
4565 9576 4.415596 TCCTCTCTGCTTCTTCTTCTTCT 58.584 43.478 0.00 0.00 0.00 2.85
4566 9577 4.381932 CCTCCTCTCTGCTTCTTCTTCTTC 60.382 50.000 0.00 0.00 0.00 2.87
4567 9578 3.515104 CCTCCTCTCTGCTTCTTCTTCTT 59.485 47.826 0.00 0.00 0.00 2.52
4568 9579 3.099141 CCTCCTCTCTGCTTCTTCTTCT 58.901 50.000 0.00 0.00 0.00 2.85
4569 9580 3.096092 TCCTCCTCTCTGCTTCTTCTTC 58.904 50.000 0.00 0.00 0.00 2.87
4570 9581 3.099141 CTCCTCCTCTCTGCTTCTTCTT 58.901 50.000 0.00 0.00 0.00 2.52
4630 9670 0.689412 AGTCCTCTGCTTCTAGCCCC 60.689 60.000 0.00 0.00 41.51 5.80
4745 9785 3.009115 GTGCCCTACCAGGAGCCA 61.009 66.667 0.00 0.00 37.67 4.75


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.