Multiple sequence alignment - TraesCS2B01G610700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G610700 chr2B 100.000 4036 0 0 1 4036 790230962 790226927 0.000000e+00 7454.0
1 TraesCS2B01G610700 chr2B 87.542 1196 106 21 1916 3080 789790958 789792141 0.000000e+00 1343.0
2 TraesCS2B01G610700 chr2B 84.668 874 84 24 993 1853 789790116 789790952 0.000000e+00 826.0
3 TraesCS2B01G610700 chr2B 80.536 1120 163 34 1911 3009 790105003 790106088 0.000000e+00 809.0
4 TraesCS2B01G610700 chr2B 81.775 631 72 27 923 1532 790104029 790104637 4.690000e-134 488.0
5 TraesCS2B01G610700 chr2B 93.537 294 18 1 3277 3569 789792417 789792710 1.720000e-118 436.0
6 TraesCS2B01G610700 chr2B 83.908 174 16 7 3598 3770 789792706 789792868 5.400000e-34 156.0
7 TraesCS2B01G610700 chr2B 86.747 83 11 0 557 639 140099724 140099806 4.300000e-15 93.5
8 TraesCS2B01G610700 chr2B 97.297 37 1 0 3677 3713 789792830 789792866 3.370000e-06 63.9
9 TraesCS2B01G610700 chr2D 96.574 1868 52 3 1238 3105 645722896 645724751 0.000000e+00 3085.0
10 TraesCS2B01G610700 chr2D 85.774 2158 189 36 972 3083 645817133 645815048 0.000000e+00 2176.0
11 TraesCS2B01G610700 chr2D 87.083 1618 114 34 1106 2669 645561029 645559453 0.000000e+00 1742.0
12 TraesCS2B01G610700 chr2D 98.016 756 14 1 3102 3856 645725883 645726638 0.000000e+00 1312.0
13 TraesCS2B01G610700 chr2D 87.018 1194 107 11 1922 3080 645791852 645793032 0.000000e+00 1303.0
14 TraesCS2B01G610700 chr2D 87.076 944 67 28 1009 1925 645788463 645789378 0.000000e+00 1016.0
15 TraesCS2B01G610700 chr2D 80.282 1136 157 34 1915 3012 645612968 645611862 0.000000e+00 795.0
16 TraesCS2B01G610700 chr2D 89.207 593 47 12 3275 3863 645794668 645795247 0.000000e+00 725.0
17 TraesCS2B01G610700 chr2D 92.818 362 8 2 820 1178 645722529 645722875 3.600000e-140 508.0
18 TraesCS2B01G610700 chr2D 81.034 406 56 11 3102 3501 645610871 645610481 1.820000e-78 303.0
19 TraesCS2B01G610700 chr2D 81.935 310 34 9 1375 1682 645613785 645613496 4.030000e-60 243.0
20 TraesCS2B01G610700 chr2D 92.053 151 11 1 392 541 150887016 150887166 1.140000e-50 211.0
21 TraesCS2B01G610700 chr2D 96.522 115 4 0 3853 3967 62385910 62385796 1.480000e-44 191.0
22 TraesCS2B01G610700 chr2D 98.734 79 0 1 3959 4036 645726636 645726714 5.440000e-29 139.0
23 TraesCS2B01G610700 chr2D 97.561 41 1 0 3677 3717 645726514 645726554 2.010000e-08 71.3
24 TraesCS2B01G610700 chr2D 97.561 41 1 0 3677 3717 645795118 645795158 2.010000e-08 71.3
25 TraesCS2B01G610700 chr2A 87.523 1082 102 10 2023 3083 771501458 771500389 0.000000e+00 1219.0
26 TraesCS2B01G610700 chr2A 84.683 914 64 23 970 1866 771502308 771501454 0.000000e+00 843.0
27 TraesCS2B01G610700 chr2A 79.876 1133 160 34 1921 3012 771126597 771125492 0.000000e+00 767.0
28 TraesCS2B01G610700 chr2A 79.301 1145 161 44 1915 3012 771073978 771072863 0.000000e+00 732.0
29 TraesCS2B01G610700 chr2A 79.049 1136 148 47 1971 3045 771345708 771346814 0.000000e+00 697.0
30 TraesCS2B01G610700 chr2A 88.993 427 31 11 3376 3798 771497195 771496781 7.740000e-142 514.0
31 TraesCS2B01G610700 chr2A 81.488 578 68 27 1108 1682 771127317 771126776 4.790000e-119 438.0
32 TraesCS2B01G610700 chr2A 82.078 385 39 12 981 1338 771074948 771074567 6.560000e-78 302.0
33 TraesCS2B01G610700 chr2A 95.122 41 2 0 3677 3717 771496847 771496807 9.360000e-07 65.8
34 TraesCS2B01G610700 chr6A 83.168 303 28 16 3551 3848 83356299 83356583 5.180000e-64 255.0
35 TraesCS2B01G610700 chr6A 95.868 121 4 1 3855 3975 158087917 158088036 1.140000e-45 195.0
36 TraesCS2B01G610700 chr6A 96.581 117 4 0 3848 3964 542057050 542057166 1.140000e-45 195.0
37 TraesCS2B01G610700 chr6A 86.207 87 12 0 553 639 501168796 501168882 1.190000e-15 95.3
38 TraesCS2B01G610700 chr6D 82.818 291 28 14 3561 3848 65394719 65394448 1.450000e-59 241.0
39 TraesCS2B01G610700 chr1D 93.793 145 9 0 397 541 297540091 297539947 6.790000e-53 219.0
40 TraesCS2B01G610700 chr1D 82.278 237 34 8 396 629 463987028 463986797 8.850000e-47 198.0
41 TraesCS2B01G610700 chrUn 93.103 145 10 0 396 540 329701516 329701372 3.160000e-51 213.0
42 TraesCS2B01G610700 chr5D 93.103 145 10 0 396 540 497392884 497392740 3.160000e-51 213.0
43 TraesCS2B01G610700 chr5D 93.103 145 10 0 396 540 497393914 497393770 3.160000e-51 213.0
44 TraesCS2B01G610700 chr5D 92.466 146 11 0 396 541 521863990 521864135 4.090000e-50 209.0
45 TraesCS2B01G610700 chr7B 93.103 145 9 1 396 540 674235348 674235205 1.140000e-50 211.0
46 TraesCS2B01G610700 chr3A 98.182 110 2 0 3853 3962 638982430 638982539 4.120000e-45 193.0
47 TraesCS2B01G610700 chr3A 82.727 220 32 4 422 639 508519704 508519919 1.480000e-44 191.0
48 TraesCS2B01G610700 chr3A 87.821 156 14 5 3853 4007 739141415 739141566 1.150000e-40 178.0
49 TraesCS2B01G610700 chr3A 87.912 91 10 1 549 639 714357886 714357797 5.520000e-19 106.0
50 TraesCS2B01G610700 chr1A 97.345 113 3 0 3852 3964 56105920 56105808 4.120000e-45 193.0
51 TraesCS2B01G610700 chr1A 97.321 112 3 0 3851 3962 332892772 332892883 1.480000e-44 191.0
52 TraesCS2B01G610700 chr1A 89.773 88 8 1 556 643 440459413 440459327 1.190000e-20 111.0
53 TraesCS2B01G610700 chr1A 78.333 120 11 15 141 246 565273272 565273390 3.370000e-06 63.9
54 TraesCS2B01G610700 chr1B 96.522 115 4 0 3852 3966 8679430 8679544 1.480000e-44 191.0
55 TraesCS2B01G610700 chr1B 87.273 55 6 1 145 198 181218919 181218865 1.210000e-05 62.1
56 TraesCS2B01G610700 chr6B 97.297 111 3 0 3851 3961 120355393 120355503 5.330000e-44 189.0
57 TraesCS2B01G610700 chr6B 89.655 87 9 0 553 639 509318455 509318541 1.190000e-20 111.0
58 TraesCS2B01G610700 chr3B 90.361 83 8 0 557 639 607483004 607483086 4.260000e-20 110.0
59 TraesCS2B01G610700 chr5A 88.608 79 8 1 561 639 643927898 643927975 1.190000e-15 95.3


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G610700 chr2B 790226927 790230962 4035 True 7454.000 7454 100.000000 1 4036 1 chr2B.!!$R1 4035
1 TraesCS2B01G610700 chr2B 790104029 790106088 2059 False 648.500 809 81.155500 923 3009 2 chr2B.!!$F3 2086
2 TraesCS2B01G610700 chr2B 789790116 789792868 2752 False 564.980 1343 89.390400 993 3770 5 chr2B.!!$F2 2777
3 TraesCS2B01G610700 chr2D 645815048 645817133 2085 True 2176.000 2176 85.774000 972 3083 1 chr2D.!!$R3 2111
4 TraesCS2B01G610700 chr2D 645559453 645561029 1576 True 1742.000 1742 87.083000 1106 2669 1 chr2D.!!$R2 1563
5 TraesCS2B01G610700 chr2D 645722529 645726714 4185 False 1023.060 3085 96.740600 820 4036 5 chr2D.!!$F2 3216
6 TraesCS2B01G610700 chr2D 645788463 645795247 6784 False 778.825 1303 90.215500 1009 3863 4 chr2D.!!$F3 2854
7 TraesCS2B01G610700 chr2D 645610481 645613785 3304 True 447.000 795 81.083667 1375 3501 3 chr2D.!!$R4 2126
8 TraesCS2B01G610700 chr2A 771345708 771346814 1106 False 697.000 697 79.049000 1971 3045 1 chr2A.!!$F1 1074
9 TraesCS2B01G610700 chr2A 771496781 771502308 5527 True 660.450 1219 89.080250 970 3798 4 chr2A.!!$R3 2828
10 TraesCS2B01G610700 chr2A 771125492 771127317 1825 True 602.500 767 80.682000 1108 3012 2 chr2A.!!$R2 1904
11 TraesCS2B01G610700 chr2A 771072863 771074948 2085 True 517.000 732 80.689500 981 3012 2 chr2A.!!$R1 2031
12 TraesCS2B01G610700 chr5D 497392740 497393914 1174 True 213.000 213 93.103000 396 540 2 chr5D.!!$R1 144

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
711 768 0.034059 GACTATGGTGGAGCCGATGG 59.966 60.0 0.00 0.0 41.21 3.51 F
768 825 0.036671 ACCTGCCTTAACAGCCGTAC 60.037 55.0 0.00 0.0 36.29 3.67 F
776 833 0.244450 TAACAGCCGTACTTCGTGGG 59.756 55.0 0.00 0.0 37.94 4.61 F
2019 5741 0.253044 TAGTGAGCCCCATGCACTTC 59.747 55.0 8.01 0.0 44.83 3.01 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1706 2447 0.108424 CCTGGACTTGAGCCTCTTCG 60.108 60.000 0.00 0.0 0.00 3.79 R
2479 6238 0.604780 ATCGGCATGATAGGCACTGC 60.605 55.000 0.00 0.0 41.52 4.40 R
2698 6475 3.701040 AGAATCAAGCAACACAACTTGGT 59.299 39.130 3.18 0.0 42.82 3.67 R
3931 11416 2.156117 CCGTTCGAAATTACTTGTCGCA 59.844 45.455 0.00 0.0 34.80 5.10 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
25 26 2.600470 AAAAAGGGGTCGCAGGGC 60.600 61.111 0.00 0.00 0.00 5.19
26 27 4.678743 AAAAGGGGTCGCAGGGCC 62.679 66.667 0.00 0.00 0.00 5.80
44 45 4.439253 GGCCAGACCCATATTTAGAAGT 57.561 45.455 0.00 0.00 0.00 3.01
45 46 4.137543 GGCCAGACCCATATTTAGAAGTG 58.862 47.826 0.00 0.00 0.00 3.16
46 47 3.565902 GCCAGACCCATATTTAGAAGTGC 59.434 47.826 0.00 0.00 0.00 4.40
47 48 3.809832 CCAGACCCATATTTAGAAGTGCG 59.190 47.826 0.00 0.00 0.00 5.34
48 49 4.442706 CAGACCCATATTTAGAAGTGCGT 58.557 43.478 0.00 0.00 0.00 5.24
49 50 4.271049 CAGACCCATATTTAGAAGTGCGTG 59.729 45.833 0.00 0.00 0.00 5.34
50 51 4.081087 AGACCCATATTTAGAAGTGCGTGT 60.081 41.667 0.00 0.00 0.00 4.49
51 52 3.938963 ACCCATATTTAGAAGTGCGTGTG 59.061 43.478 0.00 0.00 0.00 3.82
52 53 4.188462 CCCATATTTAGAAGTGCGTGTGA 58.812 43.478 0.00 0.00 0.00 3.58
53 54 4.034048 CCCATATTTAGAAGTGCGTGTGAC 59.966 45.833 0.00 0.00 0.00 3.67
54 55 4.259810 CCATATTTAGAAGTGCGTGTGACG 60.260 45.833 0.00 0.00 45.88 4.35
55 56 1.493772 TTTAGAAGTGCGTGTGACGG 58.506 50.000 0.00 0.00 42.82 4.79
56 57 0.319211 TTAGAAGTGCGTGTGACGGG 60.319 55.000 0.00 0.00 42.82 5.28
57 58 2.758770 TAGAAGTGCGTGTGACGGGC 62.759 60.000 0.00 0.00 42.82 6.13
64 65 3.998672 GTGTGACGGGCCGAGGAA 61.999 66.667 35.78 12.66 0.00 3.36
65 66 3.998672 TGTGACGGGCCGAGGAAC 61.999 66.667 35.78 22.90 0.00 3.62
112 113 6.680874 TTTTTAACGAAACTTGGCTCTACA 57.319 33.333 0.00 0.00 0.00 2.74
113 114 6.680874 TTTTAACGAAACTTGGCTCTACAA 57.319 33.333 0.00 0.00 0.00 2.41
114 115 6.870971 TTTAACGAAACTTGGCTCTACAAT 57.129 33.333 0.00 0.00 0.00 2.71
115 116 7.966246 TTTAACGAAACTTGGCTCTACAATA 57.034 32.000 0.00 0.00 0.00 1.90
116 117 5.857822 AACGAAACTTGGCTCTACAATAC 57.142 39.130 0.00 0.00 0.00 1.89
117 118 4.890088 ACGAAACTTGGCTCTACAATACA 58.110 39.130 0.00 0.00 0.00 2.29
118 119 5.302360 ACGAAACTTGGCTCTACAATACAA 58.698 37.500 0.00 0.00 0.00 2.41
119 120 5.761234 ACGAAACTTGGCTCTACAATACAAA 59.239 36.000 0.00 0.00 0.00 2.83
120 121 6.430000 ACGAAACTTGGCTCTACAATACAAAT 59.570 34.615 0.00 0.00 0.00 2.32
121 122 7.040686 ACGAAACTTGGCTCTACAATACAAATT 60.041 33.333 0.00 0.00 0.00 1.82
122 123 8.447833 CGAAACTTGGCTCTACAATACAAATTA 58.552 33.333 0.00 0.00 0.00 1.40
123 124 9.774742 GAAACTTGGCTCTACAATACAAATTAG 57.225 33.333 0.00 0.00 0.00 1.73
124 125 7.321745 ACTTGGCTCTACAATACAAATTAGC 57.678 36.000 0.00 0.00 0.00 3.09
125 126 6.884295 ACTTGGCTCTACAATACAAATTAGCA 59.116 34.615 0.00 0.00 28.54 3.49
126 127 6.677781 TGGCTCTACAATACAAATTAGCAC 57.322 37.500 0.00 0.00 28.54 4.40
127 128 5.588648 TGGCTCTACAATACAAATTAGCACC 59.411 40.000 0.00 0.00 28.54 5.01
128 129 5.588648 GGCTCTACAATACAAATTAGCACCA 59.411 40.000 0.00 0.00 28.54 4.17
129 130 6.458342 GGCTCTACAATACAAATTAGCACCAC 60.458 42.308 0.00 0.00 28.54 4.16
130 131 6.458342 GCTCTACAATACAAATTAGCACCACC 60.458 42.308 0.00 0.00 0.00 4.61
131 132 5.883673 TCTACAATACAAATTAGCACCACCC 59.116 40.000 0.00 0.00 0.00 4.61
132 133 4.411927 ACAATACAAATTAGCACCACCCA 58.588 39.130 0.00 0.00 0.00 4.51
133 134 5.022787 ACAATACAAATTAGCACCACCCAT 58.977 37.500 0.00 0.00 0.00 4.00
134 135 6.191315 ACAATACAAATTAGCACCACCCATA 58.809 36.000 0.00 0.00 0.00 2.74
135 136 6.665680 ACAATACAAATTAGCACCACCCATAA 59.334 34.615 0.00 0.00 0.00 1.90
136 137 7.179338 ACAATACAAATTAGCACCACCCATAAA 59.821 33.333 0.00 0.00 0.00 1.40
137 138 7.912778 ATACAAATTAGCACCACCCATAAAT 57.087 32.000 0.00 0.00 0.00 1.40
138 139 6.619329 ACAAATTAGCACCACCCATAAATT 57.381 33.333 0.00 0.00 0.00 1.82
139 140 7.014988 ACAAATTAGCACCACCCATAAATTT 57.985 32.000 0.00 0.00 0.00 1.82
140 141 7.102993 ACAAATTAGCACCACCCATAAATTTC 58.897 34.615 0.00 0.00 0.00 2.17
141 142 6.865834 AATTAGCACCACCCATAAATTTCA 57.134 33.333 0.00 0.00 0.00 2.69
142 143 5.652994 TTAGCACCACCCATAAATTTCAC 57.347 39.130 0.00 0.00 0.00 3.18
143 144 2.491693 AGCACCACCCATAAATTTCACG 59.508 45.455 0.00 0.00 0.00 4.35
144 145 2.230266 GCACCACCCATAAATTTCACGT 59.770 45.455 0.00 0.00 0.00 4.49
145 146 3.440872 GCACCACCCATAAATTTCACGTA 59.559 43.478 0.00 0.00 0.00 3.57
146 147 4.082679 GCACCACCCATAAATTTCACGTAA 60.083 41.667 0.00 0.00 0.00 3.18
147 148 5.395642 CACCACCCATAAATTTCACGTAAC 58.604 41.667 0.00 0.00 0.00 2.50
148 149 4.154556 ACCACCCATAAATTTCACGTAACG 59.845 41.667 0.00 0.00 0.00 3.18
149 150 4.154556 CCACCCATAAATTTCACGTAACGT 59.845 41.667 0.00 0.00 42.36 3.99
150 151 5.350914 CCACCCATAAATTTCACGTAACGTA 59.649 40.000 0.00 0.00 38.32 3.57
151 152 6.455913 CCACCCATAAATTTCACGTAACGTAG 60.456 42.308 0.00 0.00 38.32 3.51
152 153 6.310956 CACCCATAAATTTCACGTAACGTAGA 59.689 38.462 0.00 0.00 38.32 2.59
153 154 6.873076 ACCCATAAATTTCACGTAACGTAGAA 59.127 34.615 0.00 0.00 38.32 2.10
154 155 7.387397 ACCCATAAATTTCACGTAACGTAGAAA 59.613 33.333 1.74 1.74 38.32 2.52
155 156 7.689400 CCCATAAATTTCACGTAACGTAGAAAC 59.311 37.037 1.49 0.00 38.32 2.78
183 184 5.674933 GGGACGAAACCAAGAATATCATC 57.325 43.478 0.00 0.00 0.00 2.92
184 185 5.123227 GGGACGAAACCAAGAATATCATCA 58.877 41.667 0.00 0.00 0.00 3.07
185 186 5.765182 GGGACGAAACCAAGAATATCATCAT 59.235 40.000 0.00 0.00 0.00 2.45
186 187 6.293626 GGGACGAAACCAAGAATATCATCATG 60.294 42.308 0.00 0.00 0.00 3.07
187 188 6.064846 ACGAAACCAAGAATATCATCATGC 57.935 37.500 0.00 0.00 0.00 4.06
188 189 5.824624 ACGAAACCAAGAATATCATCATGCT 59.175 36.000 0.00 0.00 0.00 3.79
189 190 6.319658 ACGAAACCAAGAATATCATCATGCTT 59.680 34.615 0.00 0.00 0.00 3.91
190 191 7.498900 ACGAAACCAAGAATATCATCATGCTTA 59.501 33.333 0.00 0.00 0.00 3.09
191 192 8.344831 CGAAACCAAGAATATCATCATGCTTAA 58.655 33.333 0.00 0.00 0.00 1.85
447 448 0.524414 TACACGCGCATACACTCACT 59.476 50.000 5.73 0.00 0.00 3.41
456 457 4.797604 GCGCATACACTCACTCCTATGAAT 60.798 45.833 0.30 0.00 0.00 2.57
460 461 4.134379 ACACTCACTCCTATGAATGCAG 57.866 45.455 0.00 0.00 28.78 4.41
472 473 1.227943 AATGCAGACACGCACACCT 60.228 52.632 0.00 0.00 46.56 4.00
484 485 1.472728 CGCACACCTTACCCCTATGAC 60.473 57.143 0.00 0.00 0.00 3.06
493 494 1.146263 CCCCTATGACCACCTTCGC 59.854 63.158 0.00 0.00 0.00 4.70
510 511 1.153369 GCAAGACTGAGCCGGCATA 60.153 57.895 31.54 16.21 0.00 3.14
576 633 4.392047 TGAATAAATGCGAGCATCAGGAT 58.608 39.130 11.26 0.39 35.31 3.24
579 636 6.486320 TGAATAAATGCGAGCATCAGGATTTA 59.514 34.615 11.26 6.42 41.59 1.40
582 639 5.779529 AATGCGAGCATCAGGATTTAAAT 57.220 34.783 11.26 0.00 35.31 1.40
625 682 4.223923 CAGAGTTCCTCTAACCATCCAACT 59.776 45.833 0.00 0.00 38.99 3.16
630 687 4.942944 TCCTCTAACCATCCAACTACAGA 58.057 43.478 0.00 0.00 0.00 3.41
639 696 4.253685 CATCCAACTACAGATTGGTTCGT 58.746 43.478 3.81 0.00 45.83 3.85
640 697 3.921677 TCCAACTACAGATTGGTTCGTC 58.078 45.455 3.81 0.00 45.83 4.20
641 698 3.000727 CCAACTACAGATTGGTTCGTCC 58.999 50.000 0.00 0.00 41.55 4.79
642 699 3.556213 CCAACTACAGATTGGTTCGTCCA 60.556 47.826 0.00 0.00 45.60 4.02
643 700 4.253685 CAACTACAGATTGGTTCGTCCAT 58.746 43.478 3.33 0.00 46.60 3.41
644 701 3.861840 ACTACAGATTGGTTCGTCCATG 58.138 45.455 3.33 0.00 46.60 3.66
645 702 2.859165 ACAGATTGGTTCGTCCATGT 57.141 45.000 3.33 3.10 46.60 3.21
646 703 3.140325 ACAGATTGGTTCGTCCATGTT 57.860 42.857 3.33 0.00 46.60 2.71
647 704 3.486383 ACAGATTGGTTCGTCCATGTTT 58.514 40.909 3.33 0.00 46.60 2.83
648 705 3.888930 ACAGATTGGTTCGTCCATGTTTT 59.111 39.130 3.33 0.00 46.60 2.43
649 706 4.340950 ACAGATTGGTTCGTCCATGTTTTT 59.659 37.500 3.33 0.00 46.60 1.94
670 727 4.776795 TTCTTTTTAGGGATTGGTTCGC 57.223 40.909 0.00 0.00 37.56 4.70
671 728 3.086282 TCTTTTTAGGGATTGGTTCGCC 58.914 45.455 0.00 0.00 38.02 5.54
672 729 1.842052 TTTTAGGGATTGGTTCGCCC 58.158 50.000 0.00 0.00 42.37 6.13
673 730 0.699399 TTTAGGGATTGGTTCGCCCA 59.301 50.000 0.00 0.00 44.55 5.36
674 731 0.923358 TTAGGGATTGGTTCGCCCAT 59.077 50.000 0.00 0.00 44.74 4.00
675 732 1.809133 TAGGGATTGGTTCGCCCATA 58.191 50.000 0.00 0.00 44.74 2.74
676 733 0.182775 AGGGATTGGTTCGCCCATAC 59.817 55.000 0.00 0.00 44.74 2.39
677 734 0.182775 GGGATTGGTTCGCCCATACT 59.817 55.000 0.00 0.00 44.74 2.12
678 735 1.409661 GGGATTGGTTCGCCCATACTT 60.410 52.381 0.00 0.00 44.74 2.24
679 736 2.375146 GGATTGGTTCGCCCATACTTT 58.625 47.619 0.00 0.00 44.74 2.66
680 737 3.547746 GGATTGGTTCGCCCATACTTTA 58.452 45.455 0.00 0.00 44.74 1.85
681 738 4.142038 GGATTGGTTCGCCCATACTTTAT 58.858 43.478 0.00 0.00 44.74 1.40
682 739 4.583073 GGATTGGTTCGCCCATACTTTATT 59.417 41.667 0.00 0.00 44.74 1.40
683 740 5.766174 GGATTGGTTCGCCCATACTTTATTA 59.234 40.000 0.00 0.00 44.74 0.98
684 741 6.293790 GGATTGGTTCGCCCATACTTTATTAC 60.294 42.308 0.00 0.00 44.74 1.89
685 742 5.362105 TGGTTCGCCCATACTTTATTACT 57.638 39.130 0.00 0.00 38.72 2.24
686 743 5.120399 TGGTTCGCCCATACTTTATTACTG 58.880 41.667 0.00 0.00 38.72 2.74
687 744 4.514066 GGTTCGCCCATACTTTATTACTGG 59.486 45.833 0.00 0.00 0.00 4.00
688 745 5.121105 GTTCGCCCATACTTTATTACTGGT 58.879 41.667 0.00 0.00 0.00 4.00
689 746 6.282930 GTTCGCCCATACTTTATTACTGGTA 58.717 40.000 0.00 0.00 0.00 3.25
690 747 6.675413 TCGCCCATACTTTATTACTGGTAT 57.325 37.500 0.00 0.00 0.00 2.73
691 748 7.779754 TCGCCCATACTTTATTACTGGTATA 57.220 36.000 0.00 0.00 0.00 1.47
692 749 7.833786 TCGCCCATACTTTATTACTGGTATAG 58.166 38.462 0.00 0.00 0.00 1.31
693 750 7.670979 TCGCCCATACTTTATTACTGGTATAGA 59.329 37.037 0.00 0.00 0.00 1.98
694 751 7.758528 CGCCCATACTTTATTACTGGTATAGAC 59.241 40.741 0.00 0.00 0.00 2.59
695 752 8.813951 GCCCATACTTTATTACTGGTATAGACT 58.186 37.037 0.00 0.00 0.00 3.24
703 760 9.886337 TTTATTACTGGTATAGACTATGGTGGA 57.114 33.333 5.17 0.00 0.00 4.02
704 761 9.529823 TTATTACTGGTATAGACTATGGTGGAG 57.470 37.037 5.17 0.00 0.00 3.86
705 762 4.153411 ACTGGTATAGACTATGGTGGAGC 58.847 47.826 5.17 0.00 0.00 4.70
706 763 3.507411 TGGTATAGACTATGGTGGAGCC 58.493 50.000 5.17 0.00 37.90 4.70
707 764 2.492484 GGTATAGACTATGGTGGAGCCG 59.508 54.545 5.17 0.00 41.21 5.52
708 765 2.677542 ATAGACTATGGTGGAGCCGA 57.322 50.000 0.00 0.00 41.21 5.54
709 766 2.677542 TAGACTATGGTGGAGCCGAT 57.322 50.000 0.00 0.00 41.21 4.18
710 767 1.043816 AGACTATGGTGGAGCCGATG 58.956 55.000 0.00 0.00 41.21 3.84
711 768 0.034059 GACTATGGTGGAGCCGATGG 59.966 60.000 0.00 0.00 41.21 3.51
712 769 0.398522 ACTATGGTGGAGCCGATGGA 60.399 55.000 0.00 0.00 41.21 3.41
713 770 0.979665 CTATGGTGGAGCCGATGGAT 59.020 55.000 0.00 0.00 41.21 3.41
714 771 0.686789 TATGGTGGAGCCGATGGATG 59.313 55.000 0.00 0.00 41.21 3.51
715 772 1.348008 ATGGTGGAGCCGATGGATGT 61.348 55.000 0.00 0.00 41.21 3.06
716 773 1.524621 GGTGGAGCCGATGGATGTG 60.525 63.158 0.00 0.00 0.00 3.21
717 774 1.522092 GTGGAGCCGATGGATGTGA 59.478 57.895 0.00 0.00 0.00 3.58
718 775 0.811616 GTGGAGCCGATGGATGTGAC 60.812 60.000 0.00 0.00 0.00 3.67
719 776 1.227674 GGAGCCGATGGATGTGACC 60.228 63.158 0.00 0.00 0.00 4.02
720 777 1.227674 GAGCCGATGGATGTGACCC 60.228 63.158 0.00 0.00 0.00 4.46
721 778 2.588877 GCCGATGGATGTGACCCG 60.589 66.667 0.00 0.00 0.00 5.28
722 779 3.088941 GCCGATGGATGTGACCCGA 62.089 63.158 0.00 0.00 0.00 5.14
723 780 1.748403 CCGATGGATGTGACCCGAT 59.252 57.895 0.00 0.00 0.00 4.18
724 781 0.106708 CCGATGGATGTGACCCGATT 59.893 55.000 0.00 0.00 0.00 3.34
725 782 1.475034 CCGATGGATGTGACCCGATTT 60.475 52.381 0.00 0.00 0.00 2.17
726 783 1.599071 CGATGGATGTGACCCGATTTG 59.401 52.381 0.00 0.00 0.00 2.32
727 784 2.643551 GATGGATGTGACCCGATTTGT 58.356 47.619 0.00 0.00 0.00 2.83
728 785 2.577606 TGGATGTGACCCGATTTGTT 57.422 45.000 0.00 0.00 0.00 2.83
729 786 2.158559 TGGATGTGACCCGATTTGTTG 58.841 47.619 0.00 0.00 0.00 3.33
730 787 2.224646 TGGATGTGACCCGATTTGTTGA 60.225 45.455 0.00 0.00 0.00 3.18
731 788 2.161609 GGATGTGACCCGATTTGTTGAC 59.838 50.000 0.00 0.00 0.00 3.18
732 789 2.631160 TGTGACCCGATTTGTTGACT 57.369 45.000 0.00 0.00 0.00 3.41
733 790 2.217750 TGTGACCCGATTTGTTGACTG 58.782 47.619 0.00 0.00 0.00 3.51
734 791 1.535462 GTGACCCGATTTGTTGACTGG 59.465 52.381 0.00 0.00 0.00 4.00
735 792 0.521735 GACCCGATTTGTTGACTGGC 59.478 55.000 0.00 0.00 0.00 4.85
736 793 0.893727 ACCCGATTTGTTGACTGGCC 60.894 55.000 0.00 0.00 0.00 5.36
737 794 1.595093 CCCGATTTGTTGACTGGCCC 61.595 60.000 0.00 0.00 0.00 5.80
738 795 1.501741 CGATTTGTTGACTGGCCCG 59.498 57.895 0.00 0.00 0.00 6.13
739 796 1.883021 GATTTGTTGACTGGCCCGG 59.117 57.895 0.00 0.00 0.00 5.73
740 797 0.893727 GATTTGTTGACTGGCCCGGT 60.894 55.000 0.00 0.00 0.00 5.28
741 798 1.178534 ATTTGTTGACTGGCCCGGTG 61.179 55.000 0.00 0.00 0.00 4.94
742 799 2.559922 TTTGTTGACTGGCCCGGTGT 62.560 55.000 0.00 0.00 0.00 4.16
743 800 2.978010 GTTGACTGGCCCGGTGTG 60.978 66.667 0.00 0.00 0.00 3.82
744 801 3.164977 TTGACTGGCCCGGTGTGA 61.165 61.111 0.00 0.00 0.00 3.58
745 802 3.177194 TTGACTGGCCCGGTGTGAG 62.177 63.158 0.00 0.00 0.00 3.51
746 803 3.626924 GACTGGCCCGGTGTGAGT 61.627 66.667 0.00 0.00 0.00 3.41
747 804 3.883744 GACTGGCCCGGTGTGAGTG 62.884 68.421 0.00 0.00 0.00 3.51
748 805 3.625897 CTGGCCCGGTGTGAGTGA 61.626 66.667 0.00 0.00 0.00 3.41
749 806 3.164977 TGGCCCGGTGTGAGTGAA 61.165 61.111 0.00 0.00 0.00 3.18
750 807 2.668550 GGCCCGGTGTGAGTGAAC 60.669 66.667 0.00 0.00 0.00 3.18
751 808 2.668550 GCCCGGTGTGAGTGAACC 60.669 66.667 0.00 0.00 0.00 3.62
752 809 3.148084 CCCGGTGTGAGTGAACCT 58.852 61.111 0.00 0.00 34.06 3.50
753 810 1.301716 CCCGGTGTGAGTGAACCTG 60.302 63.158 0.00 0.00 34.06 4.00
754 811 1.961277 CCGGTGTGAGTGAACCTGC 60.961 63.158 0.00 0.00 34.06 4.85
755 812 1.961277 CGGTGTGAGTGAACCTGCC 60.961 63.158 0.00 0.00 34.06 4.85
756 813 1.451936 GGTGTGAGTGAACCTGCCT 59.548 57.895 0.00 0.00 33.40 4.75
757 814 0.179018 GGTGTGAGTGAACCTGCCTT 60.179 55.000 0.00 0.00 33.40 4.35
758 815 1.071699 GGTGTGAGTGAACCTGCCTTA 59.928 52.381 0.00 0.00 33.40 2.69
759 816 2.486548 GGTGTGAGTGAACCTGCCTTAA 60.487 50.000 0.00 0.00 33.40 1.85
760 817 2.548480 GTGTGAGTGAACCTGCCTTAAC 59.452 50.000 0.00 0.00 0.00 2.01
761 818 2.171659 TGTGAGTGAACCTGCCTTAACA 59.828 45.455 0.00 0.00 0.00 2.41
762 819 2.808543 GTGAGTGAACCTGCCTTAACAG 59.191 50.000 0.00 0.00 37.42 3.16
763 820 1.807142 GAGTGAACCTGCCTTAACAGC 59.193 52.381 0.00 0.00 36.29 4.40
764 821 0.881796 GTGAACCTGCCTTAACAGCC 59.118 55.000 0.00 0.00 36.29 4.85
765 822 0.605319 TGAACCTGCCTTAACAGCCG 60.605 55.000 0.00 0.00 36.29 5.52
766 823 0.605589 GAACCTGCCTTAACAGCCGT 60.606 55.000 0.00 0.00 36.29 5.68
767 824 0.688487 AACCTGCCTTAACAGCCGTA 59.312 50.000 0.00 0.00 36.29 4.02
768 825 0.036671 ACCTGCCTTAACAGCCGTAC 60.037 55.000 0.00 0.00 36.29 3.67
769 826 0.249398 CCTGCCTTAACAGCCGTACT 59.751 55.000 0.00 0.00 36.29 2.73
770 827 1.338769 CCTGCCTTAACAGCCGTACTT 60.339 52.381 0.00 0.00 36.29 2.24
771 828 2.000447 CTGCCTTAACAGCCGTACTTC 59.000 52.381 0.00 0.00 0.00 3.01
772 829 0.997196 GCCTTAACAGCCGTACTTCG 59.003 55.000 0.00 0.00 39.52 3.79
773 830 1.670967 GCCTTAACAGCCGTACTTCGT 60.671 52.381 0.00 0.00 37.94 3.85
774 831 1.990563 CCTTAACAGCCGTACTTCGTG 59.009 52.381 0.00 0.00 37.94 4.35
775 832 1.990563 CTTAACAGCCGTACTTCGTGG 59.009 52.381 0.00 0.00 37.94 4.94
776 833 0.244450 TAACAGCCGTACTTCGTGGG 59.756 55.000 0.00 0.00 37.94 4.61
777 834 2.813908 CAGCCGTACTTCGTGGGC 60.814 66.667 0.00 0.00 45.91 5.36
778 835 4.078516 AGCCGTACTTCGTGGGCC 62.079 66.667 0.00 0.00 46.75 5.80
780 837 4.807039 CCGTACTTCGTGGGCCGG 62.807 72.222 0.00 0.00 37.94 6.13
797 854 2.049248 GCCCAAACACGGCACATG 60.049 61.111 0.00 0.00 46.27 3.21
798 855 2.049248 CCCAAACACGGCACATGC 60.049 61.111 0.00 0.00 41.14 4.06
799 856 2.563798 CCCAAACACGGCACATGCT 61.564 57.895 3.48 0.00 41.70 3.79
919 976 0.748729 ACCCTAACGCGGAGAGAGAG 60.749 60.000 12.47 0.00 0.00 3.20
920 977 1.357334 CCTAACGCGGAGAGAGAGC 59.643 63.158 12.47 0.00 0.00 4.09
1230 1891 1.067416 CGAGCGGATGGATTCGGAA 59.933 57.895 0.00 0.00 0.00 4.30
1400 2126 1.044611 GAGGTGGAGATGGACCTAGC 58.955 60.000 0.00 0.00 42.95 3.42
1419 2145 5.361857 CCTAGCCAAATCAAACTCCATCATT 59.638 40.000 0.00 0.00 0.00 2.57
1420 2146 5.750352 AGCCAAATCAAACTCCATCATTT 57.250 34.783 0.00 0.00 0.00 2.32
1421 2147 5.727434 AGCCAAATCAAACTCCATCATTTC 58.273 37.500 0.00 0.00 0.00 2.17
1422 2148 5.482878 AGCCAAATCAAACTCCATCATTTCT 59.517 36.000 0.00 0.00 0.00 2.52
1423 2149 5.579511 GCCAAATCAAACTCCATCATTTCTG 59.420 40.000 0.00 0.00 0.00 3.02
1424 2150 6.694447 CCAAATCAAACTCCATCATTTCTGT 58.306 36.000 0.00 0.00 0.00 3.41
1672 2407 3.274288 CCTTTCTGGCACAAGTATCCTC 58.726 50.000 0.00 0.00 38.70 3.71
1706 2447 1.480545 GACTTCTTCAGAGGAGAGGGC 59.519 57.143 0.00 0.00 32.39 5.19
2019 5741 0.253044 TAGTGAGCCCCATGCACTTC 59.747 55.000 8.01 0.00 44.83 3.01
2218 5940 3.275848 TTCTCTTCTTGAGGGGAAGGA 57.724 47.619 0.00 0.00 42.86 3.36
2255 5977 1.066430 CACCCAAGAAGTAAGCGCCTA 60.066 52.381 2.29 0.00 0.00 3.93
2256 5978 1.838077 ACCCAAGAAGTAAGCGCCTAT 59.162 47.619 2.29 0.00 0.00 2.57
2393 6149 1.617850 TCTCGTGCAATTTTGGCCAAT 59.382 42.857 21.26 1.35 0.00 3.16
2479 6238 5.181811 TGTTGATCACTAAAAGATGCCAGTG 59.818 40.000 0.00 0.00 39.79 3.66
2571 6330 1.608025 GCCTGCAGCAACTGTACTGTA 60.608 52.381 8.66 6.90 42.97 2.74
2698 6475 2.777960 AAGGAACTGCCCTGCCCAA 61.778 57.895 0.00 0.00 40.86 4.12
2880 6669 2.729028 AGCCTACTCAGACTCTCCTC 57.271 55.000 0.00 0.00 0.00 3.71
2881 6670 1.214424 AGCCTACTCAGACTCTCCTCC 59.786 57.143 0.00 0.00 0.00 4.30
2882 6671 1.064314 GCCTACTCAGACTCTCCTCCA 60.064 57.143 0.00 0.00 0.00 3.86
2883 6672 2.930950 CCTACTCAGACTCTCCTCCAG 58.069 57.143 0.00 0.00 0.00 3.86
2884 6673 2.507886 CCTACTCAGACTCTCCTCCAGA 59.492 54.545 0.00 0.00 0.00 3.86
2885 6674 2.507407 ACTCAGACTCTCCTCCAGAC 57.493 55.000 0.00 0.00 0.00 3.51
2886 6675 1.992557 ACTCAGACTCTCCTCCAGACT 59.007 52.381 0.00 0.00 0.00 3.24
2887 6676 2.026262 ACTCAGACTCTCCTCCAGACTC 60.026 54.545 0.00 0.00 0.00 3.36
2888 6677 2.239654 CTCAGACTCTCCTCCAGACTCT 59.760 54.545 0.00 0.00 0.00 3.24
2889 6678 2.238646 TCAGACTCTCCTCCAGACTCTC 59.761 54.545 0.00 0.00 0.00 3.20
2890 6679 1.564348 AGACTCTCCTCCAGACTCTCC 59.436 57.143 0.00 0.00 0.00 3.71
2891 6680 1.564348 GACTCTCCTCCAGACTCTCCT 59.436 57.143 0.00 0.00 0.00 3.69
2977 6766 1.264749 TGTGTCCTTGCCGGCTCTAT 61.265 55.000 29.70 0.00 0.00 1.98
3257 10412 8.553085 TCTCCAGAAGATTGATAGATTGGTAA 57.447 34.615 0.00 0.00 0.00 2.85
3750 11235 3.268334 TGCACATTACCCAACCCTCTATT 59.732 43.478 0.00 0.00 0.00 1.73
3854 11339 1.215423 GGGATTGTATGGCTCCCTTGT 59.785 52.381 0.16 0.00 44.49 3.16
3855 11340 2.441750 GGGATTGTATGGCTCCCTTGTA 59.558 50.000 0.16 0.00 44.49 2.41
3856 11341 3.477530 GGATTGTATGGCTCCCTTGTAC 58.522 50.000 0.00 0.00 0.00 2.90
3857 11342 3.136626 GGATTGTATGGCTCCCTTGTACT 59.863 47.826 0.00 0.00 0.00 2.73
3858 11343 3.906720 TTGTATGGCTCCCTTGTACTC 57.093 47.619 0.00 0.00 0.00 2.59
3859 11344 2.116238 TGTATGGCTCCCTTGTACTCC 58.884 52.381 0.00 0.00 0.00 3.85
3860 11345 1.416772 GTATGGCTCCCTTGTACTCCC 59.583 57.143 0.00 0.00 0.00 4.30
3861 11346 0.044855 ATGGCTCCCTTGTACTCCCT 59.955 55.000 0.00 0.00 0.00 4.20
3862 11347 0.617820 TGGCTCCCTTGTACTCCCTC 60.618 60.000 0.00 0.00 0.00 4.30
3863 11348 0.325765 GGCTCCCTTGTACTCCCTCT 60.326 60.000 0.00 0.00 0.00 3.69
3864 11349 0.827368 GCTCCCTTGTACTCCCTCTG 59.173 60.000 0.00 0.00 0.00 3.35
3865 11350 1.897647 GCTCCCTTGTACTCCCTCTGT 60.898 57.143 0.00 0.00 0.00 3.41
3866 11351 2.541466 CTCCCTTGTACTCCCTCTGTT 58.459 52.381 0.00 0.00 0.00 3.16
3867 11352 2.498078 CTCCCTTGTACTCCCTCTGTTC 59.502 54.545 0.00 0.00 0.00 3.18
3868 11353 1.204941 CCCTTGTACTCCCTCTGTTCG 59.795 57.143 0.00 0.00 0.00 3.95
3869 11354 1.204941 CCTTGTACTCCCTCTGTTCGG 59.795 57.143 0.00 0.00 0.00 4.30
3870 11355 2.168496 CTTGTACTCCCTCTGTTCGGA 58.832 52.381 0.00 0.00 0.00 4.55
3871 11356 2.297698 TGTACTCCCTCTGTTCGGAA 57.702 50.000 0.00 0.00 0.00 4.30
3872 11357 2.816411 TGTACTCCCTCTGTTCGGAAT 58.184 47.619 0.00 0.00 0.00 3.01
3873 11358 3.170717 TGTACTCCCTCTGTTCGGAATT 58.829 45.455 0.00 0.00 0.00 2.17
3874 11359 4.346730 TGTACTCCCTCTGTTCGGAATTA 58.653 43.478 0.00 0.00 0.00 1.40
3875 11360 3.889520 ACTCCCTCTGTTCGGAATTAC 57.110 47.619 0.00 0.00 0.00 1.89
3876 11361 3.442076 ACTCCCTCTGTTCGGAATTACT 58.558 45.455 0.00 0.00 0.00 2.24
3877 11362 3.838903 ACTCCCTCTGTTCGGAATTACTT 59.161 43.478 0.00 0.00 0.00 2.24
3878 11363 4.184629 CTCCCTCTGTTCGGAATTACTTG 58.815 47.826 0.00 0.00 0.00 3.16
3879 11364 3.581332 TCCCTCTGTTCGGAATTACTTGT 59.419 43.478 0.00 0.00 0.00 3.16
3880 11365 3.933332 CCCTCTGTTCGGAATTACTTGTC 59.067 47.826 0.00 0.00 0.00 3.18
3881 11366 4.322801 CCCTCTGTTCGGAATTACTTGTCT 60.323 45.833 0.00 0.00 0.00 3.41
3882 11367 4.865365 CCTCTGTTCGGAATTACTTGTCTC 59.135 45.833 0.00 0.00 0.00 3.36
3883 11368 4.482386 TCTGTTCGGAATTACTTGTCTCG 58.518 43.478 0.00 0.00 0.00 4.04
3884 11369 3.581755 TGTTCGGAATTACTTGTCTCGG 58.418 45.455 0.00 0.00 0.00 4.63
3885 11370 3.256383 TGTTCGGAATTACTTGTCTCGGA 59.744 43.478 0.00 0.00 0.00 4.55
3886 11371 4.240096 GTTCGGAATTACTTGTCTCGGAA 58.760 43.478 0.00 0.00 0.00 4.30
3887 11372 4.524316 TCGGAATTACTTGTCTCGGAAA 57.476 40.909 0.00 0.00 0.00 3.13
3888 11373 5.080969 TCGGAATTACTTGTCTCGGAAAT 57.919 39.130 0.00 0.00 0.00 2.17
3889 11374 4.868171 TCGGAATTACTTGTCTCGGAAATG 59.132 41.667 0.00 0.00 0.00 2.32
3890 11375 4.034048 CGGAATTACTTGTCTCGGAAATGG 59.966 45.833 0.00 0.00 0.00 3.16
3891 11376 5.183228 GGAATTACTTGTCTCGGAAATGGA 58.817 41.667 0.00 0.00 0.00 3.41
3892 11377 5.823045 GGAATTACTTGTCTCGGAAATGGAT 59.177 40.000 0.00 0.00 0.00 3.41
3893 11378 6.238484 GGAATTACTTGTCTCGGAAATGGATG 60.238 42.308 0.00 0.00 0.00 3.51
3894 11379 3.703001 ACTTGTCTCGGAAATGGATGT 57.297 42.857 0.00 0.00 0.00 3.06
3895 11380 4.819105 ACTTGTCTCGGAAATGGATGTA 57.181 40.909 0.00 0.00 0.00 2.29
3896 11381 5.359194 ACTTGTCTCGGAAATGGATGTAT 57.641 39.130 0.00 0.00 0.00 2.29
3897 11382 5.360591 ACTTGTCTCGGAAATGGATGTATC 58.639 41.667 0.00 0.00 0.00 2.24
3898 11383 5.129485 ACTTGTCTCGGAAATGGATGTATCT 59.871 40.000 0.00 0.00 0.00 1.98
3899 11384 6.323996 ACTTGTCTCGGAAATGGATGTATCTA 59.676 38.462 0.00 0.00 0.00 1.98
3900 11385 6.332735 TGTCTCGGAAATGGATGTATCTAG 57.667 41.667 0.00 0.00 0.00 2.43
3901 11386 6.068670 TGTCTCGGAAATGGATGTATCTAGA 58.931 40.000 0.00 0.00 0.00 2.43
3902 11387 6.549736 TGTCTCGGAAATGGATGTATCTAGAA 59.450 38.462 0.00 0.00 0.00 2.10
3903 11388 6.864165 GTCTCGGAAATGGATGTATCTAGAAC 59.136 42.308 0.00 0.00 0.00 3.01
3904 11389 6.778069 TCTCGGAAATGGATGTATCTAGAACT 59.222 38.462 0.00 0.00 0.00 3.01
3905 11390 7.942894 TCTCGGAAATGGATGTATCTAGAACTA 59.057 37.037 0.00 0.00 0.00 2.24
3906 11391 8.473358 TCGGAAATGGATGTATCTAGAACTAA 57.527 34.615 0.00 0.00 0.00 2.24
3907 11392 8.920174 TCGGAAATGGATGTATCTAGAACTAAA 58.080 33.333 0.00 0.00 0.00 1.85
3908 11393 9.542462 CGGAAATGGATGTATCTAGAACTAAAA 57.458 33.333 0.00 0.00 0.00 1.52
3933 11418 9.664332 AATACATCTAGATACATCCATTTCTGC 57.336 33.333 4.54 0.00 0.00 4.26
3934 11419 6.162079 ACATCTAGATACATCCATTTCTGCG 58.838 40.000 4.54 0.00 0.00 5.18
3935 11420 6.015095 ACATCTAGATACATCCATTTCTGCGA 60.015 38.462 4.54 0.00 0.00 5.10
3936 11421 5.773575 TCTAGATACATCCATTTCTGCGAC 58.226 41.667 0.00 0.00 0.00 5.19
3937 11422 4.406648 AGATACATCCATTTCTGCGACA 57.593 40.909 0.00 0.00 0.00 4.35
3938 11423 4.769688 AGATACATCCATTTCTGCGACAA 58.230 39.130 0.00 0.00 0.00 3.18
3939 11424 4.813161 AGATACATCCATTTCTGCGACAAG 59.187 41.667 0.00 0.00 0.00 3.16
3940 11425 2.783135 ACATCCATTTCTGCGACAAGT 58.217 42.857 0.00 0.00 0.00 3.16
3941 11426 3.937814 ACATCCATTTCTGCGACAAGTA 58.062 40.909 0.00 0.00 0.00 2.24
3942 11427 4.323417 ACATCCATTTCTGCGACAAGTAA 58.677 39.130 0.00 0.00 0.00 2.24
3943 11428 4.943705 ACATCCATTTCTGCGACAAGTAAT 59.056 37.500 0.00 0.00 0.00 1.89
3944 11429 5.415701 ACATCCATTTCTGCGACAAGTAATT 59.584 36.000 0.00 0.00 0.00 1.40
3945 11430 5.957842 TCCATTTCTGCGACAAGTAATTT 57.042 34.783 0.00 0.00 0.00 1.82
3946 11431 5.938322 TCCATTTCTGCGACAAGTAATTTC 58.062 37.500 0.00 0.00 0.00 2.17
3947 11432 4.788100 CCATTTCTGCGACAAGTAATTTCG 59.212 41.667 0.00 4.05 35.82 3.46
3948 11433 5.390461 CCATTTCTGCGACAAGTAATTTCGA 60.390 40.000 10.25 0.00 34.62 3.71
3949 11434 5.660629 TTTCTGCGACAAGTAATTTCGAA 57.339 34.783 0.00 0.00 34.62 3.71
3950 11435 4.640805 TCTGCGACAAGTAATTTCGAAC 57.359 40.909 0.00 0.00 34.62 3.95
3951 11436 3.120616 TCTGCGACAAGTAATTTCGAACG 59.879 43.478 0.00 0.00 34.62 3.95
3952 11437 2.156117 TGCGACAAGTAATTTCGAACGG 59.844 45.455 0.00 0.00 34.62 4.44
3953 11438 2.409378 GCGACAAGTAATTTCGAACGGA 59.591 45.455 0.00 0.00 34.62 4.69
3954 11439 3.481467 GCGACAAGTAATTTCGAACGGAG 60.481 47.826 0.00 0.00 34.62 4.63
3955 11440 3.060363 CGACAAGTAATTTCGAACGGAGG 59.940 47.826 0.00 0.00 34.62 4.30
3956 11441 3.332034 ACAAGTAATTTCGAACGGAGGG 58.668 45.455 0.00 0.00 0.00 4.30
3957 11442 3.007182 ACAAGTAATTTCGAACGGAGGGA 59.993 43.478 0.00 0.00 0.00 4.20
3958 11443 3.521947 AGTAATTTCGAACGGAGGGAG 57.478 47.619 0.00 0.00 0.00 4.30
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
8 9 2.600470 GCCCTGCGACCCCTTTTT 60.600 61.111 0.00 0.00 0.00 1.94
9 10 4.678743 GGCCCTGCGACCCCTTTT 62.679 66.667 0.00 0.00 0.00 2.27
23 24 4.137543 CACTTCTAAATATGGGTCTGGCC 58.862 47.826 0.00 0.00 0.00 5.36
24 25 3.565902 GCACTTCTAAATATGGGTCTGGC 59.434 47.826 0.00 0.00 0.00 4.85
25 26 3.809832 CGCACTTCTAAATATGGGTCTGG 59.190 47.826 0.00 0.00 0.00 3.86
26 27 4.271049 CACGCACTTCTAAATATGGGTCTG 59.729 45.833 0.00 0.00 36.22 3.51
27 28 4.081087 ACACGCACTTCTAAATATGGGTCT 60.081 41.667 0.00 0.00 36.22 3.85
28 29 4.034048 CACACGCACTTCTAAATATGGGTC 59.966 45.833 0.00 0.00 36.22 4.46
29 30 3.938963 CACACGCACTTCTAAATATGGGT 59.061 43.478 0.00 0.00 38.62 4.51
30 31 4.034048 GTCACACGCACTTCTAAATATGGG 59.966 45.833 0.00 0.00 0.00 4.00
31 32 4.259810 CGTCACACGCACTTCTAAATATGG 60.260 45.833 0.00 0.00 33.65 2.74
32 33 4.259810 CCGTCACACGCACTTCTAAATATG 60.260 45.833 0.00 0.00 40.91 1.78
33 34 3.863424 CCGTCACACGCACTTCTAAATAT 59.137 43.478 0.00 0.00 40.91 1.28
34 35 3.247442 CCGTCACACGCACTTCTAAATA 58.753 45.455 0.00 0.00 40.91 1.40
35 36 2.066262 CCGTCACACGCACTTCTAAAT 58.934 47.619 0.00 0.00 40.91 1.40
36 37 1.493772 CCGTCACACGCACTTCTAAA 58.506 50.000 0.00 0.00 40.91 1.85
37 38 0.319211 CCCGTCACACGCACTTCTAA 60.319 55.000 0.00 0.00 40.91 2.10
38 39 1.287815 CCCGTCACACGCACTTCTA 59.712 57.895 0.00 0.00 40.91 2.10
39 40 2.029073 CCCGTCACACGCACTTCT 59.971 61.111 0.00 0.00 40.91 2.85
40 41 3.712881 GCCCGTCACACGCACTTC 61.713 66.667 0.00 0.00 40.91 3.01
47 48 3.998672 TTCCTCGGCCCGTCACAC 61.999 66.667 1.63 0.00 0.00 3.82
48 49 3.998672 GTTCCTCGGCCCGTCACA 61.999 66.667 1.63 0.00 0.00 3.58
74 75 2.617274 AAAAAGTCGCAGCTCGCCC 61.617 57.895 3.09 0.00 37.30 6.13
75 76 2.946762 AAAAAGTCGCAGCTCGCC 59.053 55.556 3.09 0.00 37.30 5.54
89 90 6.680874 TGTAGAGCCAAGTTTCGTTAAAAA 57.319 33.333 0.00 0.00 0.00 1.94
90 91 6.680874 TTGTAGAGCCAAGTTTCGTTAAAA 57.319 33.333 0.00 0.00 0.00 1.52
91 92 6.870971 ATTGTAGAGCCAAGTTTCGTTAAA 57.129 33.333 0.00 0.00 0.00 1.52
92 93 6.930164 TGTATTGTAGAGCCAAGTTTCGTTAA 59.070 34.615 0.00 0.00 0.00 2.01
93 94 6.457355 TGTATTGTAGAGCCAAGTTTCGTTA 58.543 36.000 0.00 0.00 0.00 3.18
94 95 5.302360 TGTATTGTAGAGCCAAGTTTCGTT 58.698 37.500 0.00 0.00 0.00 3.85
95 96 4.890088 TGTATTGTAGAGCCAAGTTTCGT 58.110 39.130 0.00 0.00 0.00 3.85
96 97 5.856126 TTGTATTGTAGAGCCAAGTTTCG 57.144 39.130 0.00 0.00 0.00 3.46
97 98 9.774742 CTAATTTGTATTGTAGAGCCAAGTTTC 57.225 33.333 0.00 0.00 0.00 2.78
98 99 8.244113 GCTAATTTGTATTGTAGAGCCAAGTTT 58.756 33.333 0.00 0.00 0.00 2.66
99 100 7.393234 TGCTAATTTGTATTGTAGAGCCAAGTT 59.607 33.333 0.00 0.00 0.00 2.66
100 101 6.884295 TGCTAATTTGTATTGTAGAGCCAAGT 59.116 34.615 0.00 0.00 0.00 3.16
101 102 7.189512 GTGCTAATTTGTATTGTAGAGCCAAG 58.810 38.462 0.00 0.00 0.00 3.61
102 103 6.094881 GGTGCTAATTTGTATTGTAGAGCCAA 59.905 38.462 0.00 0.00 0.00 4.52
103 104 5.588648 GGTGCTAATTTGTATTGTAGAGCCA 59.411 40.000 0.00 0.00 0.00 4.75
104 105 5.588648 TGGTGCTAATTTGTATTGTAGAGCC 59.411 40.000 0.00 0.00 0.00 4.70
105 106 6.458342 GGTGGTGCTAATTTGTATTGTAGAGC 60.458 42.308 0.00 0.00 0.00 4.09
106 107 6.038271 GGGTGGTGCTAATTTGTATTGTAGAG 59.962 42.308 0.00 0.00 0.00 2.43
107 108 5.883673 GGGTGGTGCTAATTTGTATTGTAGA 59.116 40.000 0.00 0.00 0.00 2.59
108 109 5.650266 TGGGTGGTGCTAATTTGTATTGTAG 59.350 40.000 0.00 0.00 0.00 2.74
109 110 5.571285 TGGGTGGTGCTAATTTGTATTGTA 58.429 37.500 0.00 0.00 0.00 2.41
110 111 4.411927 TGGGTGGTGCTAATTTGTATTGT 58.588 39.130 0.00 0.00 0.00 2.71
111 112 5.596836 ATGGGTGGTGCTAATTTGTATTG 57.403 39.130 0.00 0.00 0.00 1.90
112 113 7.726033 TTTATGGGTGGTGCTAATTTGTATT 57.274 32.000 0.00 0.00 0.00 1.89
113 114 7.912778 ATTTATGGGTGGTGCTAATTTGTAT 57.087 32.000 0.00 0.00 0.00 2.29
114 115 7.726033 AATTTATGGGTGGTGCTAATTTGTA 57.274 32.000 0.00 0.00 0.00 2.41
115 116 6.619329 AATTTATGGGTGGTGCTAATTTGT 57.381 33.333 0.00 0.00 0.00 2.83
116 117 7.064490 GTGAAATTTATGGGTGGTGCTAATTTG 59.936 37.037 0.00 0.00 0.00 2.32
117 118 7.102993 GTGAAATTTATGGGTGGTGCTAATTT 58.897 34.615 0.00 0.00 0.00 1.82
118 119 6.627065 CGTGAAATTTATGGGTGGTGCTAATT 60.627 38.462 0.00 0.00 0.00 1.40
119 120 5.163561 CGTGAAATTTATGGGTGGTGCTAAT 60.164 40.000 0.00 0.00 0.00 1.73
120 121 4.156922 CGTGAAATTTATGGGTGGTGCTAA 59.843 41.667 0.00 0.00 0.00 3.09
121 122 3.692101 CGTGAAATTTATGGGTGGTGCTA 59.308 43.478 0.00 0.00 0.00 3.49
122 123 2.491693 CGTGAAATTTATGGGTGGTGCT 59.508 45.455 0.00 0.00 0.00 4.40
123 124 2.230266 ACGTGAAATTTATGGGTGGTGC 59.770 45.455 0.00 0.00 0.00 5.01
124 125 5.395642 GTTACGTGAAATTTATGGGTGGTG 58.604 41.667 0.00 0.00 0.00 4.17
125 126 4.154556 CGTTACGTGAAATTTATGGGTGGT 59.845 41.667 0.00 0.00 0.00 4.16
126 127 4.154556 ACGTTACGTGAAATTTATGGGTGG 59.845 41.667 10.39 0.00 39.18 4.61
127 128 5.285798 ACGTTACGTGAAATTTATGGGTG 57.714 39.130 10.39 0.00 39.18 4.61
128 129 6.397272 TCTACGTTACGTGAAATTTATGGGT 58.603 36.000 21.22 0.00 41.39 4.51
129 130 6.890663 TCTACGTTACGTGAAATTTATGGG 57.109 37.500 21.22 0.00 41.39 4.00
130 131 7.420485 CGTTTCTACGTTACGTGAAATTTATGG 59.580 37.037 25.21 14.07 41.39 2.74
131 132 8.278245 CGTTTCTACGTTACGTGAAATTTATG 57.722 34.615 25.21 13.35 41.39 1.90
148 149 0.179156 TCGTCCCGCATCGTTTCTAC 60.179 55.000 0.00 0.00 0.00 2.59
149 150 0.527113 TTCGTCCCGCATCGTTTCTA 59.473 50.000 0.00 0.00 0.00 2.10
150 151 0.320073 TTTCGTCCCGCATCGTTTCT 60.320 50.000 0.00 0.00 0.00 2.52
151 152 0.179233 GTTTCGTCCCGCATCGTTTC 60.179 55.000 0.00 0.00 0.00 2.78
152 153 1.571215 GGTTTCGTCCCGCATCGTTT 61.571 55.000 0.00 0.00 0.00 3.60
153 154 2.030958 GGTTTCGTCCCGCATCGTT 61.031 57.895 0.00 0.00 0.00 3.85
154 155 2.433664 GGTTTCGTCCCGCATCGT 60.434 61.111 0.00 0.00 0.00 3.73
155 156 1.966493 CTTGGTTTCGTCCCGCATCG 61.966 60.000 0.00 0.00 0.00 3.84
156 157 0.672401 TCTTGGTTTCGTCCCGCATC 60.672 55.000 0.00 0.00 0.00 3.91
157 158 0.250553 TTCTTGGTTTCGTCCCGCAT 60.251 50.000 0.00 0.00 0.00 4.73
158 159 0.250553 ATTCTTGGTTTCGTCCCGCA 60.251 50.000 0.00 0.00 0.00 5.69
159 160 1.729284 TATTCTTGGTTTCGTCCCGC 58.271 50.000 0.00 0.00 0.00 6.13
160 161 3.527533 TGATATTCTTGGTTTCGTCCCG 58.472 45.455 0.00 0.00 0.00 5.14
161 162 5.123227 TGATGATATTCTTGGTTTCGTCCC 58.877 41.667 0.00 0.00 0.00 4.46
162 163 6.662616 CATGATGATATTCTTGGTTTCGTCC 58.337 40.000 0.00 0.00 0.00 4.79
163 164 6.017605 AGCATGATGATATTCTTGGTTTCGTC 60.018 38.462 0.00 0.00 30.14 4.20
164 165 5.824624 AGCATGATGATATTCTTGGTTTCGT 59.175 36.000 0.00 0.00 30.14 3.85
165 166 6.309712 AGCATGATGATATTCTTGGTTTCG 57.690 37.500 0.00 0.00 30.14 3.46
447 448 1.206849 TGCGTGTCTGCATTCATAGGA 59.793 47.619 0.00 0.00 40.62 2.94
456 457 0.878523 GTAAGGTGTGCGTGTCTGCA 60.879 55.000 0.00 0.00 43.95 4.41
460 461 1.670083 GGGGTAAGGTGTGCGTGTC 60.670 63.158 0.00 0.00 0.00 3.67
472 473 2.112998 CGAAGGTGGTCATAGGGGTAA 58.887 52.381 0.00 0.00 0.00 2.85
484 485 1.294659 GCTCAGTCTTGCGAAGGTGG 61.295 60.000 0.00 0.00 0.00 4.61
493 494 1.202568 TGATATGCCGGCTCAGTCTTG 60.203 52.381 29.70 0.00 0.00 3.02
510 511 7.413000 CGGTGACTTCGTAAATTTCAAGATGAT 60.413 37.037 0.00 0.00 0.00 2.45
553 589 4.392047 TCCTGATGCTCGCATTTATTCAT 58.608 39.130 5.79 0.00 36.70 2.57
554 590 3.807553 TCCTGATGCTCGCATTTATTCA 58.192 40.909 5.79 0.00 36.70 2.57
576 633 2.359143 CCCCAGCCCATCAGGATTTAAA 60.359 50.000 0.00 0.00 38.24 1.52
579 636 0.925720 TCCCCAGCCCATCAGGATTT 60.926 55.000 0.00 0.00 38.24 2.17
582 639 0.768221 GTATCCCCAGCCCATCAGGA 60.768 60.000 0.00 0.00 38.24 3.86
608 665 4.942944 TCTGTAGTTGGATGGTTAGAGGA 58.057 43.478 0.00 0.00 0.00 3.71
646 703 5.986741 GCGAACCAATCCCTAAAAAGAAAAA 59.013 36.000 0.00 0.00 0.00 1.94
647 704 5.510009 GGCGAACCAATCCCTAAAAAGAAAA 60.510 40.000 0.00 0.00 35.26 2.29
648 705 4.021807 GGCGAACCAATCCCTAAAAAGAAA 60.022 41.667 0.00 0.00 35.26 2.52
649 706 3.508402 GGCGAACCAATCCCTAAAAAGAA 59.492 43.478 0.00 0.00 35.26 2.52
650 707 3.086282 GGCGAACCAATCCCTAAAAAGA 58.914 45.455 0.00 0.00 35.26 2.52
651 708 2.165641 GGGCGAACCAATCCCTAAAAAG 59.834 50.000 0.00 0.00 39.85 2.27
652 709 2.172679 GGGCGAACCAATCCCTAAAAA 58.827 47.619 0.00 0.00 39.85 1.94
653 710 1.842052 GGGCGAACCAATCCCTAAAA 58.158 50.000 0.00 0.00 39.85 1.52
654 711 3.581163 GGGCGAACCAATCCCTAAA 57.419 52.632 0.00 0.00 39.85 1.85
664 721 4.514066 CCAGTAATAAAGTATGGGCGAACC 59.486 45.833 0.00 0.00 40.81 3.62
665 722 5.121105 ACCAGTAATAAAGTATGGGCGAAC 58.879 41.667 0.00 0.00 35.26 3.95
666 723 5.362105 ACCAGTAATAAAGTATGGGCGAA 57.638 39.130 0.00 0.00 35.26 4.70
667 724 6.675413 ATACCAGTAATAAAGTATGGGCGA 57.325 37.500 0.00 0.00 35.26 5.54
668 725 7.758528 GTCTATACCAGTAATAAAGTATGGGCG 59.241 40.741 0.00 0.00 35.26 6.13
669 726 8.813951 AGTCTATACCAGTAATAAAGTATGGGC 58.186 37.037 0.00 0.00 35.26 5.36
677 734 9.886337 TCCACCATAGTCTATACCAGTAATAAA 57.114 33.333 0.00 0.00 0.00 1.40
678 735 9.529823 CTCCACCATAGTCTATACCAGTAATAA 57.470 37.037 0.00 0.00 0.00 1.40
679 736 7.614583 GCTCCACCATAGTCTATACCAGTAATA 59.385 40.741 0.00 0.00 0.00 0.98
680 737 6.437793 GCTCCACCATAGTCTATACCAGTAAT 59.562 42.308 0.00 0.00 0.00 1.89
681 738 5.773680 GCTCCACCATAGTCTATACCAGTAA 59.226 44.000 0.00 0.00 0.00 2.24
682 739 5.322754 GCTCCACCATAGTCTATACCAGTA 58.677 45.833 0.00 0.00 0.00 2.74
683 740 4.153411 GCTCCACCATAGTCTATACCAGT 58.847 47.826 0.00 0.00 0.00 4.00
684 741 3.511934 GGCTCCACCATAGTCTATACCAG 59.488 52.174 0.00 0.00 38.86 4.00
685 742 3.507411 GGCTCCACCATAGTCTATACCA 58.493 50.000 0.00 0.00 38.86 3.25
686 743 2.492484 CGGCTCCACCATAGTCTATACC 59.508 54.545 0.00 0.00 39.03 2.73
687 744 3.418995 TCGGCTCCACCATAGTCTATAC 58.581 50.000 0.00 0.00 39.03 1.47
688 745 3.801307 TCGGCTCCACCATAGTCTATA 57.199 47.619 0.00 0.00 39.03 1.31
689 746 2.677542 TCGGCTCCACCATAGTCTAT 57.322 50.000 0.00 0.00 39.03 1.98
690 747 2.239400 CATCGGCTCCACCATAGTCTA 58.761 52.381 0.00 0.00 39.03 2.59
691 748 1.043816 CATCGGCTCCACCATAGTCT 58.956 55.000 0.00 0.00 39.03 3.24
692 749 0.034059 CCATCGGCTCCACCATAGTC 59.966 60.000 0.00 0.00 39.03 2.59
693 750 0.398522 TCCATCGGCTCCACCATAGT 60.399 55.000 0.00 0.00 39.03 2.12
694 751 0.979665 ATCCATCGGCTCCACCATAG 59.020 55.000 0.00 0.00 39.03 2.23
695 752 0.686789 CATCCATCGGCTCCACCATA 59.313 55.000 0.00 0.00 39.03 2.74
696 753 1.348008 ACATCCATCGGCTCCACCAT 61.348 55.000 0.00 0.00 39.03 3.55
697 754 1.995066 ACATCCATCGGCTCCACCA 60.995 57.895 0.00 0.00 39.03 4.17
698 755 1.524621 CACATCCATCGGCTCCACC 60.525 63.158 0.00 0.00 0.00 4.61
699 756 0.811616 GTCACATCCATCGGCTCCAC 60.812 60.000 0.00 0.00 0.00 4.02
700 757 1.522092 GTCACATCCATCGGCTCCA 59.478 57.895 0.00 0.00 0.00 3.86
701 758 1.227674 GGTCACATCCATCGGCTCC 60.228 63.158 0.00 0.00 0.00 4.70
702 759 1.227674 GGGTCACATCCATCGGCTC 60.228 63.158 0.00 0.00 0.00 4.70
703 760 2.911143 GGGTCACATCCATCGGCT 59.089 61.111 0.00 0.00 0.00 5.52
704 761 2.383245 ATCGGGTCACATCCATCGGC 62.383 60.000 0.00 0.00 0.00 5.54
705 762 0.106708 AATCGGGTCACATCCATCGG 59.893 55.000 0.00 0.00 0.00 4.18
706 763 1.599071 CAAATCGGGTCACATCCATCG 59.401 52.381 0.00 0.00 0.00 3.84
707 764 2.643551 ACAAATCGGGTCACATCCATC 58.356 47.619 0.00 0.00 0.00 3.51
708 765 2.754552 CAACAAATCGGGTCACATCCAT 59.245 45.455 0.00 0.00 0.00 3.41
709 766 2.158559 CAACAAATCGGGTCACATCCA 58.841 47.619 0.00 0.00 0.00 3.41
710 767 2.161609 GTCAACAAATCGGGTCACATCC 59.838 50.000 0.00 0.00 0.00 3.51
711 768 3.074412 AGTCAACAAATCGGGTCACATC 58.926 45.455 0.00 0.00 0.00 3.06
712 769 2.813754 CAGTCAACAAATCGGGTCACAT 59.186 45.455 0.00 0.00 0.00 3.21
713 770 2.217750 CAGTCAACAAATCGGGTCACA 58.782 47.619 0.00 0.00 0.00 3.58
714 771 1.535462 CCAGTCAACAAATCGGGTCAC 59.465 52.381 0.00 0.00 0.00 3.67
715 772 1.890876 CCAGTCAACAAATCGGGTCA 58.109 50.000 0.00 0.00 0.00 4.02
716 773 0.521735 GCCAGTCAACAAATCGGGTC 59.478 55.000 0.00 0.00 0.00 4.46
717 774 0.893727 GGCCAGTCAACAAATCGGGT 60.894 55.000 0.00 0.00 0.00 5.28
718 775 1.595093 GGGCCAGTCAACAAATCGGG 61.595 60.000 4.39 0.00 0.00 5.14
719 776 1.883021 GGGCCAGTCAACAAATCGG 59.117 57.895 4.39 0.00 0.00 4.18
720 777 1.501741 CGGGCCAGTCAACAAATCG 59.498 57.895 4.39 0.00 0.00 3.34
721 778 0.893727 ACCGGGCCAGTCAACAAATC 60.894 55.000 6.32 0.00 0.00 2.17
722 779 1.152830 ACCGGGCCAGTCAACAAAT 59.847 52.632 6.32 0.00 0.00 2.32
723 780 1.826054 CACCGGGCCAGTCAACAAA 60.826 57.895 6.32 0.00 0.00 2.83
724 781 2.203280 CACCGGGCCAGTCAACAA 60.203 61.111 6.32 0.00 0.00 2.83
725 782 3.484806 ACACCGGGCCAGTCAACA 61.485 61.111 6.32 0.00 0.00 3.33
726 783 2.978010 CACACCGGGCCAGTCAAC 60.978 66.667 6.32 0.00 0.00 3.18
727 784 3.164977 TCACACCGGGCCAGTCAA 61.165 61.111 6.32 0.00 0.00 3.18
728 785 3.625897 CTCACACCGGGCCAGTCA 61.626 66.667 6.32 0.00 0.00 3.41
729 786 3.626924 ACTCACACCGGGCCAGTC 61.627 66.667 6.32 0.00 0.00 3.51
730 787 3.941188 CACTCACACCGGGCCAGT 61.941 66.667 6.32 0.00 0.00 4.00
731 788 3.177194 TTCACTCACACCGGGCCAG 62.177 63.158 6.32 0.00 0.00 4.85
732 789 3.164977 TTCACTCACACCGGGCCA 61.165 61.111 6.32 0.00 0.00 5.36
733 790 2.668550 GTTCACTCACACCGGGCC 60.669 66.667 6.32 0.00 0.00 5.80
734 791 2.668550 GGTTCACTCACACCGGGC 60.669 66.667 6.32 0.00 0.00 6.13
735 792 1.301716 CAGGTTCACTCACACCGGG 60.302 63.158 6.32 0.00 38.21 5.73
736 793 1.961277 GCAGGTTCACTCACACCGG 60.961 63.158 0.00 0.00 38.21 5.28
737 794 1.961277 GGCAGGTTCACTCACACCG 60.961 63.158 0.00 0.00 38.21 4.94
738 795 0.179018 AAGGCAGGTTCACTCACACC 60.179 55.000 0.00 0.00 0.00 4.16
739 796 2.543777 TAAGGCAGGTTCACTCACAC 57.456 50.000 0.00 0.00 0.00 3.82
740 797 2.171659 TGTTAAGGCAGGTTCACTCACA 59.828 45.455 0.00 0.00 0.00 3.58
741 798 2.808543 CTGTTAAGGCAGGTTCACTCAC 59.191 50.000 0.00 0.00 33.11 3.51
742 799 2.810400 GCTGTTAAGGCAGGTTCACTCA 60.810 50.000 0.00 0.00 37.00 3.41
743 800 1.807142 GCTGTTAAGGCAGGTTCACTC 59.193 52.381 0.00 0.00 37.00 3.51
744 801 1.897560 GCTGTTAAGGCAGGTTCACT 58.102 50.000 0.00 0.00 37.00 3.41
752 809 4.233013 ACGAAGTACGGCTGTTAAGGCA 62.233 50.000 1.99 0.00 45.31 4.75
753 810 0.997196 CGAAGTACGGCTGTTAAGGC 59.003 55.000 1.99 0.00 45.41 4.35
754 811 1.990563 CACGAAGTACGGCTGTTAAGG 59.009 52.381 1.99 0.00 41.61 2.69
755 812 1.990563 CCACGAAGTACGGCTGTTAAG 59.009 52.381 1.99 0.00 41.61 1.85
756 813 1.337074 CCCACGAAGTACGGCTGTTAA 60.337 52.381 1.99 0.00 41.61 2.01
757 814 0.244450 CCCACGAAGTACGGCTGTTA 59.756 55.000 1.99 0.00 41.61 2.41
758 815 1.005394 CCCACGAAGTACGGCTGTT 60.005 57.895 1.99 0.00 41.61 3.16
759 816 2.654877 CCCACGAAGTACGGCTGT 59.345 61.111 2.42 2.42 41.61 4.40
781 838 2.049248 GCATGTGCCGTGTTTGGG 60.049 61.111 0.00 0.00 34.31 4.12
782 839 1.372004 CAGCATGTGCCGTGTTTGG 60.372 57.895 0.57 0.00 43.38 3.28
783 840 4.231753 CAGCATGTGCCGTGTTTG 57.768 55.556 0.57 0.00 43.38 2.93
808 865 1.134098 AGACATTCATAGGCCAACGGG 60.134 52.381 5.01 0.00 37.18 5.28
809 866 1.942657 CAGACATTCATAGGCCAACGG 59.057 52.381 5.01 0.00 0.00 4.44
810 867 1.942657 CCAGACATTCATAGGCCAACG 59.057 52.381 5.01 0.00 0.00 4.10
811 868 2.945668 GTCCAGACATTCATAGGCCAAC 59.054 50.000 5.01 0.00 0.00 3.77
812 869 2.419990 CGTCCAGACATTCATAGGCCAA 60.420 50.000 5.01 0.00 0.00 4.52
813 870 1.138859 CGTCCAGACATTCATAGGCCA 59.861 52.381 5.01 0.00 0.00 5.36
814 871 1.541233 CCGTCCAGACATTCATAGGCC 60.541 57.143 0.00 0.00 0.00 5.19
815 872 1.541233 CCCGTCCAGACATTCATAGGC 60.541 57.143 0.00 0.00 0.00 3.93
816 873 1.541233 GCCCGTCCAGACATTCATAGG 60.541 57.143 0.00 0.00 0.00 2.57
817 874 1.541233 GGCCCGTCCAGACATTCATAG 60.541 57.143 0.00 0.00 34.01 2.23
818 875 0.468226 GGCCCGTCCAGACATTCATA 59.532 55.000 0.00 0.00 34.01 2.15
941 998 0.894835 TGAGATTGCTACGCTCACCA 59.105 50.000 0.00 0.00 34.02 4.17
948 1005 2.284263 TGACTGCTGAGATTGCTACG 57.716 50.000 0.00 0.00 0.00 3.51
1203 1864 2.976350 ATCCGCTCGACGCCGATA 60.976 61.111 0.00 0.00 44.62 2.92
1211 1872 1.388837 TTCCGAATCCATCCGCTCGA 61.389 55.000 0.00 0.00 33.13 4.04
1212 1873 0.941463 CTTCCGAATCCATCCGCTCG 60.941 60.000 0.00 0.00 0.00 5.03
1230 1891 0.467384 CCATCGACTCAATGGCCTCT 59.533 55.000 3.32 0.00 37.46 3.69
1400 2126 6.694447 ACAGAAATGATGGAGTTTGATTTGG 58.306 36.000 0.00 0.00 0.00 3.28
1419 2145 2.593925 TCTCCTGCTCAGAGACAGAA 57.406 50.000 18.33 2.94 35.90 3.02
1420 2146 2.025510 TGATCTCCTGCTCAGAGACAGA 60.026 50.000 18.33 6.89 35.90 3.41
1421 2147 2.377073 TGATCTCCTGCTCAGAGACAG 58.623 52.381 0.00 8.14 0.00 3.51
1422 2148 2.521547 TGATCTCCTGCTCAGAGACA 57.478 50.000 0.00 0.00 0.00 3.41
1423 2149 2.101249 CCTTGATCTCCTGCTCAGAGAC 59.899 54.545 0.00 0.00 0.00 3.36
1424 2150 2.024560 TCCTTGATCTCCTGCTCAGAGA 60.025 50.000 0.00 3.86 0.00 3.10
1672 2407 3.331478 AGAAGTCAGCACCTTCTCATG 57.669 47.619 6.70 0.00 44.00 3.07
1706 2447 0.108424 CCTGGACTTGAGCCTCTTCG 60.108 60.000 0.00 0.00 0.00 3.79
2019 5741 0.944311 GTCTGGGCGTGTAGTGTGTG 60.944 60.000 0.00 0.00 0.00 3.82
2218 5940 2.573915 GGGTGATCTCTTGGAAGTTCCT 59.426 50.000 22.41 0.80 37.46 3.36
2393 6149 1.691976 ACTTCGAGGTCAACATGGTCA 59.308 47.619 0.00 0.00 0.00 4.02
2479 6238 0.604780 ATCGGCATGATAGGCACTGC 60.605 55.000 0.00 0.00 41.52 4.40
2485 6244 8.908786 ATATAAACCATTATCGGCATGATAGG 57.091 34.615 0.00 0.00 40.58 2.57
2571 6330 5.594926 CAAGAAAGTTGCTTGGACTGATTT 58.405 37.500 15.06 0.00 39.18 2.17
2698 6475 3.701040 AGAATCAAGCAACACAACTTGGT 59.299 39.130 3.18 0.00 42.82 3.67
2880 6669 4.775253 AGAAACTTTAGGAGGAGAGTCTGG 59.225 45.833 0.00 0.00 0.00 3.86
2881 6670 5.719173 CAGAAACTTTAGGAGGAGAGTCTG 58.281 45.833 0.00 0.00 0.00 3.51
2882 6671 4.221924 GCAGAAACTTTAGGAGGAGAGTCT 59.778 45.833 0.00 0.00 0.00 3.24
2883 6672 4.500127 GCAGAAACTTTAGGAGGAGAGTC 58.500 47.826 0.00 0.00 0.00 3.36
2884 6673 3.056465 CGCAGAAACTTTAGGAGGAGAGT 60.056 47.826 0.00 0.00 0.00 3.24
2885 6674 3.193691 TCGCAGAAACTTTAGGAGGAGAG 59.806 47.826 0.00 0.00 0.00 3.20
2886 6675 3.162666 TCGCAGAAACTTTAGGAGGAGA 58.837 45.455 0.00 0.00 0.00 3.71
2887 6676 3.594603 TCGCAGAAACTTTAGGAGGAG 57.405 47.619 0.00 0.00 0.00 3.69
2888 6677 4.315803 CTTTCGCAGAAACTTTAGGAGGA 58.684 43.478 0.55 0.00 45.90 3.71
2889 6678 3.120165 GCTTTCGCAGAAACTTTAGGAGG 60.120 47.826 0.55 0.00 45.90 4.30
2890 6679 3.748568 AGCTTTCGCAGAAACTTTAGGAG 59.251 43.478 0.55 0.00 45.90 3.69
2891 6680 3.498397 CAGCTTTCGCAGAAACTTTAGGA 59.502 43.478 0.00 0.00 45.90 2.94
3251 10406 7.757624 GTCAAGAAAACATCACTTTGTTACCAA 59.242 33.333 0.00 0.00 38.85 3.67
3257 10412 5.913137 TGGTCAAGAAAACATCACTTTGT 57.087 34.783 0.00 0.00 0.00 2.83
3266 10421 9.695526 CAGAATAATTTCATGGTCAAGAAAACA 57.304 29.630 5.64 0.00 37.30 2.83
3267 10422 9.696917 ACAGAATAATTTCATGGTCAAGAAAAC 57.303 29.630 5.64 0.00 37.30 2.43
3269 10424 9.912634 GAACAGAATAATTTCATGGTCAAGAAA 57.087 29.630 4.24 4.24 38.04 2.52
3270 10425 8.522830 GGAACAGAATAATTTCATGGTCAAGAA 58.477 33.333 0.00 0.00 32.71 2.52
3273 10428 7.773489 TGGAACAGAATAATTTCATGGTCAA 57.227 32.000 0.00 0.00 32.71 3.18
3750 11235 8.173412 ACAAGAGTAGGATACCATATCAGATCA 58.827 37.037 0.00 0.00 44.47 2.92
3854 11339 4.607239 AGTAATTCCGAACAGAGGGAGTA 58.393 43.478 0.00 0.00 33.01 2.59
3855 11340 3.442076 AGTAATTCCGAACAGAGGGAGT 58.558 45.455 0.00 0.00 33.01 3.85
3856 11341 4.184629 CAAGTAATTCCGAACAGAGGGAG 58.815 47.826 0.00 0.00 33.01 4.30
3857 11342 3.581332 ACAAGTAATTCCGAACAGAGGGA 59.419 43.478 0.00 0.00 0.00 4.20
3858 11343 3.933332 GACAAGTAATTCCGAACAGAGGG 59.067 47.826 0.00 0.00 0.00 4.30
3859 11344 4.822026 AGACAAGTAATTCCGAACAGAGG 58.178 43.478 0.00 0.00 0.00 3.69
3860 11345 4.559251 CGAGACAAGTAATTCCGAACAGAG 59.441 45.833 0.00 0.00 0.00 3.35
3861 11346 4.482386 CGAGACAAGTAATTCCGAACAGA 58.518 43.478 0.00 0.00 0.00 3.41
3862 11347 3.612860 CCGAGACAAGTAATTCCGAACAG 59.387 47.826 0.00 0.00 0.00 3.16
3863 11348 3.256383 TCCGAGACAAGTAATTCCGAACA 59.744 43.478 0.00 0.00 0.00 3.18
3864 11349 3.841643 TCCGAGACAAGTAATTCCGAAC 58.158 45.455 0.00 0.00 0.00 3.95
3865 11350 4.524316 TTCCGAGACAAGTAATTCCGAA 57.476 40.909 0.00 0.00 0.00 4.30
3866 11351 4.524316 TTTCCGAGACAAGTAATTCCGA 57.476 40.909 0.00 0.00 0.00 4.55
3867 11352 4.034048 CCATTTCCGAGACAAGTAATTCCG 59.966 45.833 0.00 0.00 0.00 4.30
3868 11353 5.183228 TCCATTTCCGAGACAAGTAATTCC 58.817 41.667 0.00 0.00 0.00 3.01
3869 11354 6.316390 ACATCCATTTCCGAGACAAGTAATTC 59.684 38.462 0.00 0.00 0.00 2.17
3870 11355 6.180472 ACATCCATTTCCGAGACAAGTAATT 58.820 36.000 0.00 0.00 0.00 1.40
3871 11356 5.745227 ACATCCATTTCCGAGACAAGTAAT 58.255 37.500 0.00 0.00 0.00 1.89
3872 11357 5.160607 ACATCCATTTCCGAGACAAGTAA 57.839 39.130 0.00 0.00 0.00 2.24
3873 11358 4.819105 ACATCCATTTCCGAGACAAGTA 57.181 40.909 0.00 0.00 0.00 2.24
3874 11359 3.703001 ACATCCATTTCCGAGACAAGT 57.297 42.857 0.00 0.00 0.00 3.16
3875 11360 5.605534 AGATACATCCATTTCCGAGACAAG 58.394 41.667 0.00 0.00 0.00 3.16
3876 11361 5.614324 AGATACATCCATTTCCGAGACAA 57.386 39.130 0.00 0.00 0.00 3.18
3877 11362 6.068670 TCTAGATACATCCATTTCCGAGACA 58.931 40.000 0.00 0.00 0.00 3.41
3878 11363 6.576662 TCTAGATACATCCATTTCCGAGAC 57.423 41.667 0.00 0.00 0.00 3.36
3879 11364 6.778069 AGTTCTAGATACATCCATTTCCGAGA 59.222 38.462 0.00 0.00 0.00 4.04
3880 11365 6.987386 AGTTCTAGATACATCCATTTCCGAG 58.013 40.000 0.00 0.00 0.00 4.63
3881 11366 6.978674 AGTTCTAGATACATCCATTTCCGA 57.021 37.500 0.00 0.00 0.00 4.55
3882 11367 9.542462 TTTTAGTTCTAGATACATCCATTTCCG 57.458 33.333 0.00 0.00 0.00 4.30
3907 11392 9.664332 GCAGAAATGGATGTATCTAGATGTATT 57.336 33.333 15.79 4.32 0.00 1.89
3908 11393 7.978414 CGCAGAAATGGATGTATCTAGATGTAT 59.022 37.037 15.79 9.11 0.00 2.29
3909 11394 7.176690 TCGCAGAAATGGATGTATCTAGATGTA 59.823 37.037 15.79 4.44 0.00 2.29
3910 11395 6.015095 TCGCAGAAATGGATGTATCTAGATGT 60.015 38.462 15.79 1.25 0.00 3.06
3911 11396 6.309980 GTCGCAGAAATGGATGTATCTAGATG 59.690 42.308 15.79 0.00 39.69 2.90
3912 11397 6.015095 TGTCGCAGAAATGGATGTATCTAGAT 60.015 38.462 10.73 10.73 39.69 1.98
3913 11398 5.301805 TGTCGCAGAAATGGATGTATCTAGA 59.698 40.000 0.00 0.00 39.69 2.43
3914 11399 5.532557 TGTCGCAGAAATGGATGTATCTAG 58.467 41.667 0.00 0.00 39.69 2.43
3915 11400 5.529581 TGTCGCAGAAATGGATGTATCTA 57.470 39.130 0.00 0.00 39.69 1.98
3916 11401 4.406648 TGTCGCAGAAATGGATGTATCT 57.593 40.909 0.00 0.00 39.69 1.98
3917 11402 4.572389 ACTTGTCGCAGAAATGGATGTATC 59.428 41.667 0.00 0.00 39.69 2.24
3918 11403 4.517285 ACTTGTCGCAGAAATGGATGTAT 58.483 39.130 0.00 0.00 39.69 2.29
3919 11404 3.937814 ACTTGTCGCAGAAATGGATGTA 58.062 40.909 0.00 0.00 39.69 2.29
3920 11405 2.783135 ACTTGTCGCAGAAATGGATGT 58.217 42.857 0.00 0.00 39.69 3.06
3921 11406 4.944962 TTACTTGTCGCAGAAATGGATG 57.055 40.909 0.00 0.00 39.69 3.51
3922 11407 6.515272 AAATTACTTGTCGCAGAAATGGAT 57.485 33.333 0.00 0.00 39.69 3.41
3923 11408 5.390461 CGAAATTACTTGTCGCAGAAATGGA 60.390 40.000 0.00 0.00 39.69 3.41
3924 11409 4.788100 CGAAATTACTTGTCGCAGAAATGG 59.212 41.667 0.00 0.00 39.69 3.16
3925 11410 5.617609 TCGAAATTACTTGTCGCAGAAATG 58.382 37.500 0.00 0.00 39.69 2.32
3926 11411 5.856126 TCGAAATTACTTGTCGCAGAAAT 57.144 34.783 0.00 0.00 39.69 2.17
3927 11412 5.437263 GTTCGAAATTACTTGTCGCAGAAA 58.563 37.500 0.00 0.00 39.69 2.52
3928 11413 4.375606 CGTTCGAAATTACTTGTCGCAGAA 60.376 41.667 0.00 0.00 39.69 3.02
3929 11414 3.120616 CGTTCGAAATTACTTGTCGCAGA 59.879 43.478 0.00 0.00 34.80 4.26
3930 11415 3.395671 CGTTCGAAATTACTTGTCGCAG 58.604 45.455 0.00 0.00 34.80 5.18
3931 11416 2.156117 CCGTTCGAAATTACTTGTCGCA 59.844 45.455 0.00 0.00 34.80 5.10
3932 11417 2.409378 TCCGTTCGAAATTACTTGTCGC 59.591 45.455 0.00 0.00 34.80 5.19
3933 11418 3.060363 CCTCCGTTCGAAATTACTTGTCG 59.940 47.826 0.00 0.00 36.12 4.35
3934 11419 3.370061 CCCTCCGTTCGAAATTACTTGTC 59.630 47.826 0.00 0.00 0.00 3.18
3935 11420 3.007182 TCCCTCCGTTCGAAATTACTTGT 59.993 43.478 0.00 0.00 0.00 3.16
3936 11421 3.592059 TCCCTCCGTTCGAAATTACTTG 58.408 45.455 0.00 0.00 0.00 3.16
3937 11422 3.260128 ACTCCCTCCGTTCGAAATTACTT 59.740 43.478 0.00 0.00 0.00 2.24
3938 11423 2.830321 ACTCCCTCCGTTCGAAATTACT 59.170 45.455 0.00 0.00 0.00 2.24
3939 11424 3.242549 ACTCCCTCCGTTCGAAATTAC 57.757 47.619 0.00 0.00 0.00 1.89
3940 11425 5.603170 AATACTCCCTCCGTTCGAAATTA 57.397 39.130 0.00 0.00 0.00 1.40
3941 11426 4.482952 AATACTCCCTCCGTTCGAAATT 57.517 40.909 0.00 0.00 0.00 1.82
3942 11427 4.648307 AGTAATACTCCCTCCGTTCGAAAT 59.352 41.667 0.00 0.00 0.00 2.17
3943 11428 4.019174 AGTAATACTCCCTCCGTTCGAAA 58.981 43.478 0.00 0.00 0.00 3.46
3944 11429 3.624777 AGTAATACTCCCTCCGTTCGAA 58.375 45.455 0.00 0.00 0.00 3.71
3945 11430 3.287867 AGTAATACTCCCTCCGTTCGA 57.712 47.619 0.00 0.00 0.00 3.71
3946 11431 3.879295 TGTAGTAATACTCCCTCCGTTCG 59.121 47.826 0.00 0.00 0.00 3.95
3947 11432 5.591877 TCTTGTAGTAATACTCCCTCCGTTC 59.408 44.000 0.00 0.00 0.00 3.95
3948 11433 5.359292 GTCTTGTAGTAATACTCCCTCCGTT 59.641 44.000 0.00 0.00 0.00 4.44
3949 11434 4.886489 GTCTTGTAGTAATACTCCCTCCGT 59.114 45.833 0.00 0.00 0.00 4.69
3950 11435 4.885907 TGTCTTGTAGTAATACTCCCTCCG 59.114 45.833 0.00 0.00 0.00 4.63
3951 11436 6.980416 ATGTCTTGTAGTAATACTCCCTCC 57.020 41.667 0.00 0.00 0.00 4.30
3952 11437 9.968870 CTAAATGTCTTGTAGTAATACTCCCTC 57.031 37.037 0.00 0.00 0.00 4.30
3953 11438 9.710818 TCTAAATGTCTTGTAGTAATACTCCCT 57.289 33.333 0.00 0.00 0.00 4.20
3954 11439 9.968870 CTCTAAATGTCTTGTAGTAATACTCCC 57.031 37.037 0.00 0.00 0.00 4.30


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.