Multiple sequence alignment - TraesCS2B01G610600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G610600 chr2B 100.000 2252 0 0 1 2252 790224491 790226742 0.000000e+00 4159.0
1 TraesCS2B01G610600 chr2B 79.967 609 75 21 167 739 790218959 790219556 2.690000e-109 405.0
2 TraesCS2B01G610600 chr2B 94.444 108 6 0 1805 1912 213252376 213252483 1.380000e-37 167.0
3 TraesCS2B01G610600 chr2B 94.444 108 6 0 1805 1912 364920161 364920268 1.380000e-37 167.0
4 TraesCS2B01G610600 chr2D 93.293 1640 43 29 43 1657 645731889 645730292 0.000000e+00 2357.0
5 TraesCS2B01G610600 chr2D 80.064 622 82 24 167 765 645732461 645731859 7.440000e-115 424.0
6 TraesCS2B01G610600 chr2D 97.826 92 1 1 2161 2252 645729033 645728943 8.330000e-35 158.0
7 TraesCS2B01G610600 chr2D 86.301 146 12 7 171 311 55253609 55253467 3.870000e-33 152.0
8 TraesCS2B01G610600 chr2D 97.403 77 2 0 2094 2170 645730295 645730219 5.050000e-27 132.0
9 TraesCS2B01G610600 chr2D 81.046 153 21 6 166 313 610416514 610416663 5.080000e-22 115.0
10 TraesCS2B01G610600 chr2D 83.465 127 16 4 185 308 55253296 55253172 1.830000e-21 113.0
11 TraesCS2B01G610600 chr2D 83.333 126 15 5 185 307 55252990 55252868 6.570000e-21 111.0
12 TraesCS2B01G610600 chr2D 97.959 49 1 0 1 49 85604803 85604755 3.990000e-13 86.1
13 TraesCS2B01G610600 chr6D 82.525 1711 152 70 42 1698 421469988 421468371 0.000000e+00 1367.0
14 TraesCS2B01G610600 chr6D 82.609 1679 153 64 74 1698 38514954 38513361 0.000000e+00 1354.0
15 TraesCS2B01G610600 chr6D 88.462 130 14 1 1792 1921 37662176 37662304 2.990000e-34 156.0
16 TraesCS2B01G610600 chr6D 92.982 57 0 3 1 54 275465268 275465323 1.850000e-11 80.5
17 TraesCS2B01G610600 chr7D 82.175 1683 155 68 71 1698 94010857 94012449 0.000000e+00 1312.0
18 TraesCS2B01G610600 chr7D 79.616 417 48 14 377 763 558929348 558929757 4.770000e-67 265.0
19 TraesCS2B01G610600 chr2A 83.973 1329 108 45 42 1330 40008424 40007161 0.000000e+00 1177.0
20 TraesCS2B01G610600 chr2A 82.558 258 20 16 1362 1602 39992587 39992338 1.050000e-48 204.0
21 TraesCS2B01G610600 chr6A 97.222 108 3 0 1805 1912 499401396 499401289 1.370000e-42 183.0
22 TraesCS2B01G610600 chr6A 94.643 112 6 0 1804 1915 359152979 359152868 8.270000e-40 174.0
23 TraesCS2B01G610600 chr3A 94.444 108 6 0 1805 1912 405503773 405503666 1.380000e-37 167.0
24 TraesCS2B01G610600 chr6B 92.174 115 9 0 1798 1912 415887501 415887387 1.790000e-36 163.0
25 TraesCS2B01G610600 chr3B 93.578 109 7 0 1804 1912 512871656 512871764 1.790000e-36 163.0
26 TraesCS2B01G610600 chr5D 93.519 108 7 0 1805 1912 505374624 505374517 6.440000e-36 161.0
27 TraesCS2B01G610600 chr7A 97.917 48 1 0 1 48 686799701 686799748 1.430000e-12 84.2
28 TraesCS2B01G610600 chr4D 100.000 45 0 0 1 45 339059887 339059931 1.430000e-12 84.2
29 TraesCS2B01G610600 chr3D 97.917 48 1 0 1 48 462238744 462238697 1.430000e-12 84.2
30 TraesCS2B01G610600 chr3D 96.000 50 2 0 1 50 105444541 105444492 5.160000e-12 82.4
31 TraesCS2B01G610600 chr4A 97.872 47 1 0 1 47 17895962 17896008 5.160000e-12 82.4
32 TraesCS2B01G610600 chr1B 97.872 47 1 0 1 47 453505873 453505919 5.160000e-12 82.4
33 TraesCS2B01G610600 chr1A 92.857 56 4 0 1 56 531236875 531236930 5.160000e-12 82.4
34 TraesCS2B01G610600 chr5B 94.595 37 1 1 405 441 19543633 19543598 3.120000e-04 56.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G610600 chr2B 790224491 790226742 2251 False 4159.00 4159 100.0000 1 2252 1 chr2B.!!$F4 2251
1 TraesCS2B01G610600 chr2B 790218959 790219556 597 False 405.00 405 79.9670 167 739 1 chr2B.!!$F3 572
2 TraesCS2B01G610600 chr2D 645728943 645732461 3518 True 767.75 2357 92.1465 43 2252 4 chr2D.!!$R3 2209
3 TraesCS2B01G610600 chr6D 421468371 421469988 1617 True 1367.00 1367 82.5250 42 1698 1 chr6D.!!$R2 1656
4 TraesCS2B01G610600 chr6D 38513361 38514954 1593 True 1354.00 1354 82.6090 74 1698 1 chr6D.!!$R1 1624
5 TraesCS2B01G610600 chr7D 94010857 94012449 1592 False 1312.00 1312 82.1750 71 1698 1 chr7D.!!$F1 1627
6 TraesCS2B01G610600 chr2A 40007161 40008424 1263 True 1177.00 1177 83.9730 42 1330 1 chr2A.!!$R2 1288

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
938 1533 0.84466 GGGGGAATAGGAAGACACCC 59.155 60.0 0.0 0.0 38.86 4.61 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2091 2743 0.034896 AATACATCATCCGGCCGTCC 59.965 55.0 26.12 0.0 0.0 4.79 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
56 587 9.825972 ATAACTCTAACAAAAATGTCATGTTCG 57.174 29.630 0.00 0.00 38.22 3.95
63 594 6.559810 ACAAAAATGTCATGTTCGACTCAAA 58.440 32.000 0.00 0.00 36.82 2.69
64 595 7.202526 ACAAAAATGTCATGTTCGACTCAAAT 58.797 30.769 0.00 0.00 36.82 2.32
65 596 7.706179 ACAAAAATGTCATGTTCGACTCAAATT 59.294 29.630 0.00 0.00 36.82 1.82
66 597 8.542132 CAAAAATGTCATGTTCGACTCAAATTT 58.458 29.630 0.00 0.00 36.82 1.82
67 598 7.627585 AAATGTCATGTTCGACTCAAATTTG 57.372 32.000 12.15 12.15 36.82 2.32
68 599 4.536065 TGTCATGTTCGACTCAAATTTGC 58.464 39.130 13.54 0.00 36.82 3.68
69 600 3.914364 GTCATGTTCGACTCAAATTTGCC 59.086 43.478 13.54 4.44 32.92 4.52
72 603 4.159377 TGTTCGACTCAAATTTGCCATC 57.841 40.909 13.54 9.20 0.00 3.51
188 742 7.297614 AGTAAACTTGCCATGGTCCATATTAT 58.702 34.615 14.67 0.00 0.00 1.28
189 743 8.444783 AGTAAACTTGCCATGGTCCATATTATA 58.555 33.333 14.67 0.00 0.00 0.98
201 755 6.663093 TGGTCCATATTATATTTGCCATGGTC 59.337 38.462 14.67 6.41 35.49 4.02
482 1051 6.449698 ACTAAAAGTGAAATTGACATGGCAG 58.550 36.000 0.00 0.00 0.00 4.85
643 1230 4.256110 TGCCATGTTCTACTCAACATCAG 58.744 43.478 0.00 0.00 43.75 2.90
766 1353 6.258230 TGTTCTACTCAAATTTGCCATCAG 57.742 37.500 13.54 7.70 0.00 2.90
795 1382 6.988580 CACCTAAAATAGCTCTGTCATCATCA 59.011 38.462 0.00 0.00 0.00 3.07
834 1421 3.064207 TGTCATCGTCTGCACCTAAAAC 58.936 45.455 0.00 0.00 0.00 2.43
900 1495 2.565841 GCCTAACATAGCCCTTCACAG 58.434 52.381 0.00 0.00 0.00 3.66
906 1501 6.378280 CCTAACATAGCCCTTCACAGAAAAAT 59.622 38.462 0.00 0.00 0.00 1.82
926 1521 3.491766 TGTGTAGAGAAGAGGGGGAAT 57.508 47.619 0.00 0.00 0.00 3.01
938 1533 0.844660 GGGGGAATAGGAAGACACCC 59.155 60.000 0.00 0.00 38.86 4.61
939 1534 1.628327 GGGGGAATAGGAAGACACCCT 60.628 57.143 0.00 0.00 42.21 4.34
955 1558 1.007721 ACCCTCAGGCATCTCACTACT 59.992 52.381 0.00 0.00 36.11 2.57
1005 1608 1.094785 AAAAATAGCGCACGATGGCT 58.905 45.000 11.47 0.00 43.12 4.75
1020 1623 3.993535 GCTTCTGGCCTGGACTTG 58.006 61.111 10.07 0.00 34.27 3.16
1023 1626 0.615331 CTTCTGGCCTGGACTTGCTA 59.385 55.000 10.07 0.00 0.00 3.49
1324 1937 4.803426 GGAGACGCAGCTCCGGTG 62.803 72.222 0.33 0.00 44.52 4.94
1325 1938 3.749064 GAGACGCAGCTCCGGTGA 61.749 66.667 7.92 0.00 32.22 4.02
1326 1939 3.973267 GAGACGCAGCTCCGGTGAC 62.973 68.421 7.92 0.00 32.22 3.67
1338 1951 3.371063 GGTGACGGCGGACTCTGA 61.371 66.667 13.24 0.00 0.00 3.27
1339 1952 2.711922 GGTGACGGCGGACTCTGAT 61.712 63.158 13.24 0.00 0.00 2.90
1340 1953 1.517257 GTGACGGCGGACTCTGATG 60.517 63.158 13.24 0.00 0.00 3.07
1341 1954 2.105128 GACGGCGGACTCTGATGG 59.895 66.667 13.24 0.00 0.00 3.51
1342 1955 4.148825 ACGGCGGACTCTGATGGC 62.149 66.667 13.24 0.00 0.00 4.40
1344 1957 4.148825 GGCGGACTCTGATGGCGT 62.149 66.667 0.00 0.00 0.00 5.68
1345 1958 2.583593 GCGGACTCTGATGGCGTC 60.584 66.667 0.00 0.00 0.00 5.19
1346 1959 2.278206 CGGACTCTGATGGCGTCG 60.278 66.667 1.67 0.00 0.00 5.12
1347 1960 2.105128 GGACTCTGATGGCGTCGG 59.895 66.667 9.34 9.34 34.31 4.79
1348 1961 2.711922 GGACTCTGATGGCGTCGGT 61.712 63.158 14.94 7.37 34.65 4.69
1349 1962 1.226717 GACTCTGATGGCGTCGGTC 60.227 63.158 14.94 12.14 34.65 4.79
1350 1963 1.934220 GACTCTGATGGCGTCGGTCA 61.934 60.000 14.94 0.00 34.65 4.02
1351 1964 1.226802 CTCTGATGGCGTCGGTCAG 60.227 63.158 14.94 14.09 40.48 3.51
1352 1965 2.887568 CTGATGGCGTCGGTCAGC 60.888 66.667 7.40 0.00 34.01 4.26
1353 1966 3.362399 CTGATGGCGTCGGTCAGCT 62.362 63.158 7.40 0.00 34.65 4.24
1354 1967 2.583593 GATGGCGTCGGTCAGCTC 60.584 66.667 0.00 0.00 29.85 4.09
1355 1968 3.356639 GATGGCGTCGGTCAGCTCA 62.357 63.158 0.00 0.00 29.85 4.26
1356 1969 3.362399 ATGGCGTCGGTCAGCTCAG 62.362 63.158 0.00 0.00 0.00 3.35
1383 1996 3.230284 GGACTCCGATGGCATCCA 58.770 61.111 21.20 7.68 38.19 3.41
1476 2104 2.185350 CGGCAGATGGAGACGCTT 59.815 61.111 0.00 0.00 0.00 4.68
1584 2234 3.744942 CAGTGTGTGTGAGATGAAAGGAG 59.255 47.826 0.00 0.00 0.00 3.69
1602 2254 1.824230 GAGAAGCAGAGGAAGAGAGCA 59.176 52.381 0.00 0.00 0.00 4.26
1634 2286 0.446616 GGAAAAGCATCGTTCGGGAC 59.553 55.000 0.00 0.00 0.00 4.46
1663 2315 2.556806 CTTTTACCGAACGCTTTCACG 58.443 47.619 3.65 0.00 39.50 4.35
1671 2323 2.664851 CGCTTTCACGGGCTGACA 60.665 61.111 0.00 0.00 0.00 3.58
1687 2339 1.305802 ACATGGCCGTGGACCTCTA 60.306 57.895 28.37 0.00 0.00 2.43
1694 2346 2.418334 GGCCGTGGACCTCTACTTTAAG 60.418 54.545 0.00 0.00 0.00 1.85
1698 2350 4.159879 CCGTGGACCTCTACTTTAAGATGT 59.840 45.833 0.00 0.00 0.00 3.06
1699 2351 5.103000 CGTGGACCTCTACTTTAAGATGTG 58.897 45.833 0.00 0.00 0.00 3.21
1700 2352 5.336531 CGTGGACCTCTACTTTAAGATGTGT 60.337 44.000 0.00 0.00 0.00 3.72
1701 2353 5.869888 GTGGACCTCTACTTTAAGATGTGTG 59.130 44.000 0.00 0.00 0.00 3.82
1702 2354 4.870991 GGACCTCTACTTTAAGATGTGTGC 59.129 45.833 0.00 0.00 0.00 4.57
1703 2355 5.337652 GGACCTCTACTTTAAGATGTGTGCT 60.338 44.000 0.00 0.00 0.00 4.40
1704 2356 5.725362 ACCTCTACTTTAAGATGTGTGCTC 58.275 41.667 0.00 0.00 0.00 4.26
1705 2357 5.246203 ACCTCTACTTTAAGATGTGTGCTCA 59.754 40.000 0.00 0.00 0.00 4.26
1706 2358 6.166279 CCTCTACTTTAAGATGTGTGCTCAA 58.834 40.000 0.00 0.00 0.00 3.02
1707 2359 6.650807 CCTCTACTTTAAGATGTGTGCTCAAA 59.349 38.462 0.00 0.00 0.00 2.69
1708 2360 7.335422 CCTCTACTTTAAGATGTGTGCTCAAAT 59.665 37.037 0.00 0.00 0.00 2.32
1709 2361 8.256611 TCTACTTTAAGATGTGTGCTCAAATC 57.743 34.615 10.40 10.40 38.28 2.17
1710 2362 6.259550 ACTTTAAGATGTGTGCTCAAATCC 57.740 37.500 14.02 0.00 38.66 3.01
1711 2363 5.769662 ACTTTAAGATGTGTGCTCAAATCCA 59.230 36.000 14.02 1.85 38.66 3.41
1712 2364 6.265196 ACTTTAAGATGTGTGCTCAAATCCAA 59.735 34.615 14.02 7.23 38.66 3.53
1713 2365 4.510038 AAGATGTGTGCTCAAATCCAAC 57.490 40.909 14.02 0.00 38.66 3.77
1714 2366 3.489355 AGATGTGTGCTCAAATCCAACA 58.511 40.909 14.02 0.00 38.66 3.33
1715 2367 3.504906 AGATGTGTGCTCAAATCCAACAG 59.495 43.478 14.02 0.00 38.66 3.16
1716 2368 2.653726 TGTGTGCTCAAATCCAACAGT 58.346 42.857 0.00 0.00 0.00 3.55
1717 2369 2.358582 TGTGTGCTCAAATCCAACAGTG 59.641 45.455 0.00 0.00 0.00 3.66
1718 2370 2.618241 GTGTGCTCAAATCCAACAGTGA 59.382 45.455 0.00 0.00 0.00 3.41
1719 2371 3.066621 GTGTGCTCAAATCCAACAGTGAA 59.933 43.478 0.00 0.00 0.00 3.18
1720 2372 3.698539 TGTGCTCAAATCCAACAGTGAAA 59.301 39.130 0.00 0.00 0.00 2.69
1721 2373 4.044426 GTGCTCAAATCCAACAGTGAAAC 58.956 43.478 0.00 0.00 0.00 2.78
1722 2374 3.068024 TGCTCAAATCCAACAGTGAAACC 59.932 43.478 0.00 0.00 37.80 3.27
1723 2375 3.068024 GCTCAAATCCAACAGTGAAACCA 59.932 43.478 0.00 0.00 37.80 3.67
1724 2376 4.794003 GCTCAAATCCAACAGTGAAACCAG 60.794 45.833 0.00 0.00 37.80 4.00
1725 2377 3.068024 TCAAATCCAACAGTGAAACCAGC 59.932 43.478 0.00 0.00 37.80 4.85
1726 2378 1.238439 ATCCAACAGTGAAACCAGCG 58.762 50.000 0.00 0.00 37.80 5.18
1727 2379 0.107410 TCCAACAGTGAAACCAGCGT 60.107 50.000 0.00 0.00 37.80 5.07
1728 2380 0.738389 CCAACAGTGAAACCAGCGTT 59.262 50.000 0.00 0.00 37.80 4.84
1729 2381 1.268539 CCAACAGTGAAACCAGCGTTC 60.269 52.381 0.00 0.00 37.80 3.95
1730 2382 1.400142 CAACAGTGAAACCAGCGTTCA 59.600 47.619 0.00 0.00 37.80 3.18
1731 2383 1.014352 ACAGTGAAACCAGCGTTCAC 58.986 50.000 14.09 14.09 37.80 3.18
1732 2384 0.042188 CAGTGAAACCAGCGTTCACG 60.042 55.000 15.25 0.00 37.80 4.35
1733 2385 0.461339 AGTGAAACCAGCGTTCACGT 60.461 50.000 15.25 0.00 38.83 4.49
1734 2386 0.042448 GTGAAACCAGCGTTCACGTC 60.042 55.000 0.62 0.00 42.22 4.34
1735 2387 0.460459 TGAAACCAGCGTTCACGTCA 60.460 50.000 0.62 0.00 42.22 4.35
1736 2388 0.232303 GAAACCAGCGTTCACGTCAG 59.768 55.000 0.62 0.00 42.22 3.51
1737 2389 0.179094 AAACCAGCGTTCACGTCAGA 60.179 50.000 0.62 0.00 42.22 3.27
1738 2390 0.179094 AACCAGCGTTCACGTCAGAA 60.179 50.000 0.62 0.00 42.22 3.02
1739 2391 0.033504 ACCAGCGTTCACGTCAGAAT 59.966 50.000 0.62 0.00 42.22 2.40
1740 2392 0.716108 CCAGCGTTCACGTCAGAATC 59.284 55.000 0.62 0.00 42.22 2.52
1741 2393 1.670087 CCAGCGTTCACGTCAGAATCT 60.670 52.381 0.62 0.00 42.22 2.40
1742 2394 1.388093 CAGCGTTCACGTCAGAATCTG 59.612 52.381 3.38 3.38 42.22 2.90
1743 2395 1.269723 AGCGTTCACGTCAGAATCTGA 59.730 47.619 9.18 9.18 42.22 3.27
1753 2405 3.482722 TCAGAATCTGACGTTCCGTAC 57.517 47.619 9.18 0.00 41.37 3.67
1754 2406 3.079578 TCAGAATCTGACGTTCCGTACT 58.920 45.455 9.18 0.00 41.37 2.73
1755 2407 3.504906 TCAGAATCTGACGTTCCGTACTT 59.495 43.478 9.18 0.00 41.37 2.24
1756 2408 4.022589 TCAGAATCTGACGTTCCGTACTTT 60.023 41.667 9.18 0.00 41.37 2.66
1757 2409 4.684703 CAGAATCTGACGTTCCGTACTTTT 59.315 41.667 3.77 0.00 41.37 2.27
1758 2410 5.860182 CAGAATCTGACGTTCCGTACTTTTA 59.140 40.000 3.77 0.00 41.37 1.52
1759 2411 5.860716 AGAATCTGACGTTCCGTACTTTTAC 59.139 40.000 0.00 0.00 41.37 2.01
1760 2412 4.836125 TCTGACGTTCCGTACTTTTACT 57.164 40.909 0.00 0.00 41.37 2.24
1761 2413 4.539870 TCTGACGTTCCGTACTTTTACTG 58.460 43.478 0.00 0.00 41.37 2.74
1762 2414 4.036734 TCTGACGTTCCGTACTTTTACTGT 59.963 41.667 0.00 0.00 41.37 3.55
1763 2415 4.290155 TGACGTTCCGTACTTTTACTGTC 58.710 43.478 0.00 0.00 41.37 3.51
1764 2416 3.642705 ACGTTCCGTACTTTTACTGTCC 58.357 45.455 0.00 0.00 38.73 4.02
1765 2417 3.068024 ACGTTCCGTACTTTTACTGTCCA 59.932 43.478 0.00 0.00 38.73 4.02
1766 2418 4.050553 CGTTCCGTACTTTTACTGTCCAA 58.949 43.478 0.00 0.00 0.00 3.53
1767 2419 4.149396 CGTTCCGTACTTTTACTGTCCAAG 59.851 45.833 0.00 0.00 0.00 3.61
1768 2420 3.656559 TCCGTACTTTTACTGTCCAAGC 58.343 45.455 0.00 0.00 0.00 4.01
1769 2421 3.069872 TCCGTACTTTTACTGTCCAAGCA 59.930 43.478 0.00 0.00 0.00 3.91
1770 2422 3.810941 CCGTACTTTTACTGTCCAAGCAA 59.189 43.478 0.00 0.00 0.00 3.91
1771 2423 4.273969 CCGTACTTTTACTGTCCAAGCAAA 59.726 41.667 0.00 0.00 0.00 3.68
1772 2424 5.220892 CCGTACTTTTACTGTCCAAGCAAAA 60.221 40.000 0.00 0.00 31.63 2.44
1774 2426 4.682787 ACTTTTACTGTCCAAGCAAAAGC 58.317 39.130 9.62 0.00 46.71 3.51
1775 2427 4.159506 ACTTTTACTGTCCAAGCAAAAGCA 59.840 37.500 9.62 0.00 46.71 3.91
1776 2428 3.988379 TTACTGTCCAAGCAAAAGCAG 57.012 42.857 0.00 0.00 0.00 4.24
1777 2429 2.057137 ACTGTCCAAGCAAAAGCAGA 57.943 45.000 0.00 0.00 0.00 4.26
1778 2430 2.378038 ACTGTCCAAGCAAAAGCAGAA 58.622 42.857 0.00 0.00 0.00 3.02
1779 2431 2.099756 ACTGTCCAAGCAAAAGCAGAAC 59.900 45.455 0.00 0.00 0.00 3.01
1780 2432 2.098614 TGTCCAAGCAAAAGCAGAACA 58.901 42.857 0.00 0.00 0.00 3.18
1781 2433 2.495270 TGTCCAAGCAAAAGCAGAACAA 59.505 40.909 0.00 0.00 0.00 2.83
1782 2434 3.132646 TGTCCAAGCAAAAGCAGAACAAT 59.867 39.130 0.00 0.00 0.00 2.71
1783 2435 3.737774 GTCCAAGCAAAAGCAGAACAATC 59.262 43.478 0.00 0.00 0.00 2.67
1784 2436 3.638160 TCCAAGCAAAAGCAGAACAATCT 59.362 39.130 0.00 0.00 35.88 2.40
1827 2479 6.732896 ATACTCCATCTGTTCGGAATTACT 57.267 37.500 0.00 0.00 0.00 2.24
1828 2480 5.422214 ACTCCATCTGTTCGGAATTACTT 57.578 39.130 0.00 0.00 0.00 2.24
1829 2481 5.178797 ACTCCATCTGTTCGGAATTACTTG 58.821 41.667 0.00 0.00 0.00 3.16
1830 2482 5.160607 TCCATCTGTTCGGAATTACTTGT 57.839 39.130 0.00 0.00 0.00 3.16
1831 2483 5.175859 TCCATCTGTTCGGAATTACTTGTC 58.824 41.667 0.00 0.00 0.00 3.18
1832 2484 5.046591 TCCATCTGTTCGGAATTACTTGTCT 60.047 40.000 0.00 0.00 0.00 3.41
1833 2485 5.292101 CCATCTGTTCGGAATTACTTGTCTC 59.708 44.000 0.00 0.00 0.00 3.36
1834 2486 4.482386 TCTGTTCGGAATTACTTGTCTCG 58.518 43.478 0.00 0.00 0.00 4.04
1835 2487 4.216902 TCTGTTCGGAATTACTTGTCTCGA 59.783 41.667 0.00 0.00 0.00 4.04
1836 2488 4.873817 TGTTCGGAATTACTTGTCTCGAA 58.126 39.130 0.00 0.00 33.66 3.71
1837 2489 5.291178 TGTTCGGAATTACTTGTCTCGAAA 58.709 37.500 0.00 0.00 37.00 3.46
1838 2490 5.754406 TGTTCGGAATTACTTGTCTCGAAAA 59.246 36.000 0.00 0.00 37.00 2.29
1839 2491 6.425721 TGTTCGGAATTACTTGTCTCGAAAAT 59.574 34.615 0.00 0.00 37.00 1.82
1840 2492 6.403333 TCGGAATTACTTGTCTCGAAAATG 57.597 37.500 0.00 0.00 0.00 2.32
1841 2493 6.160684 TCGGAATTACTTGTCTCGAAAATGA 58.839 36.000 0.00 0.00 0.00 2.57
1842 2494 6.647481 TCGGAATTACTTGTCTCGAAAATGAA 59.353 34.615 0.00 0.00 0.00 2.57
1843 2495 7.333423 TCGGAATTACTTGTCTCGAAAATGAAT 59.667 33.333 0.00 0.00 0.00 2.57
1844 2496 7.426456 CGGAATTACTTGTCTCGAAAATGAATG 59.574 37.037 0.00 0.00 0.00 2.67
1845 2497 8.237267 GGAATTACTTGTCTCGAAAATGAATGT 58.763 33.333 0.00 0.00 0.00 2.71
1849 2501 9.653287 TTACTTGTCTCGAAAATGAATGTATCT 57.347 29.630 0.00 0.00 0.00 1.98
1851 2503 9.653287 ACTTGTCTCGAAAATGAATGTATCTAA 57.347 29.630 0.00 0.00 0.00 2.10
1884 2536 9.593565 AATACATCTAGATACATCCACTTCTGA 57.406 33.333 4.54 0.00 0.00 3.27
1885 2537 7.523293 ACATCTAGATACATCCACTTCTGAG 57.477 40.000 4.54 0.00 0.00 3.35
1886 2538 7.293828 ACATCTAGATACATCCACTTCTGAGA 58.706 38.462 4.54 0.00 0.00 3.27
1887 2539 7.230510 ACATCTAGATACATCCACTTCTGAGAC 59.769 40.741 4.54 0.00 0.00 3.36
1888 2540 6.663734 TCTAGATACATCCACTTCTGAGACA 58.336 40.000 0.00 0.00 0.00 3.41
1889 2541 7.119387 TCTAGATACATCCACTTCTGAGACAA 58.881 38.462 0.00 0.00 0.00 3.18
1890 2542 6.219417 AGATACATCCACTTCTGAGACAAG 57.781 41.667 0.00 0.00 0.00 3.16
1891 2543 5.719085 AGATACATCCACTTCTGAGACAAGT 59.281 40.000 0.00 0.00 34.24 3.16
1892 2544 6.892456 AGATACATCCACTTCTGAGACAAGTA 59.108 38.462 0.00 0.00 32.61 2.24
1893 2545 5.808366 ACATCCACTTCTGAGACAAGTAA 57.192 39.130 0.00 0.00 32.61 2.24
1894 2546 6.365970 ACATCCACTTCTGAGACAAGTAAT 57.634 37.500 0.00 0.00 32.61 1.89
1895 2547 6.773638 ACATCCACTTCTGAGACAAGTAATT 58.226 36.000 0.00 0.00 32.61 1.40
1896 2548 6.876257 ACATCCACTTCTGAGACAAGTAATTC 59.124 38.462 0.00 0.00 32.61 2.17
1897 2549 5.794894 TCCACTTCTGAGACAAGTAATTCC 58.205 41.667 0.00 0.00 32.61 3.01
1898 2550 4.627467 CCACTTCTGAGACAAGTAATTCCG 59.373 45.833 0.00 0.00 32.61 4.30
1899 2551 5.470368 CACTTCTGAGACAAGTAATTCCGA 58.530 41.667 0.00 0.00 32.61 4.55
1900 2552 6.102663 CACTTCTGAGACAAGTAATTCCGAT 58.897 40.000 0.00 0.00 32.61 4.18
1901 2553 6.254589 CACTTCTGAGACAAGTAATTCCGATC 59.745 42.308 0.00 0.00 32.61 3.69
1902 2554 4.921547 TCTGAGACAAGTAATTCCGATCG 58.078 43.478 8.51 8.51 0.00 3.69
1903 2555 4.041740 TGAGACAAGTAATTCCGATCGG 57.958 45.455 28.62 28.62 0.00 4.18
1904 2556 3.697542 TGAGACAAGTAATTCCGATCGGA 59.302 43.478 32.59 32.59 43.52 4.55
1905 2557 4.202020 TGAGACAAGTAATTCCGATCGGAG 60.202 45.833 33.67 23.21 46.06 4.63
1906 2558 3.068307 AGACAAGTAATTCCGATCGGAGG 59.932 47.826 33.67 20.23 46.06 4.30
1907 2559 2.102588 ACAAGTAATTCCGATCGGAGGG 59.897 50.000 33.67 20.83 46.06 4.30
1908 2560 2.364324 CAAGTAATTCCGATCGGAGGGA 59.636 50.000 33.67 21.95 46.06 4.20
1909 2561 2.240279 AGTAATTCCGATCGGAGGGAG 58.760 52.381 33.67 8.69 46.06 4.30
1910 2562 1.962100 GTAATTCCGATCGGAGGGAGT 59.038 52.381 33.67 22.27 46.06 3.85
1911 2563 2.376695 AATTCCGATCGGAGGGAGTA 57.623 50.000 33.67 20.47 46.06 2.59
1912 2564 2.606751 ATTCCGATCGGAGGGAGTAT 57.393 50.000 33.67 21.75 46.06 2.12
1913 2565 1.906990 TTCCGATCGGAGGGAGTATC 58.093 55.000 33.67 0.00 46.06 2.24
1914 2566 0.769247 TCCGATCGGAGGGAGTATCA 59.231 55.000 32.59 6.76 39.76 2.15
1915 2567 1.169577 CCGATCGGAGGGAGTATCAG 58.830 60.000 30.62 0.00 34.77 2.90
1916 2568 1.545875 CCGATCGGAGGGAGTATCAGT 60.546 57.143 30.62 0.00 34.77 3.41
1917 2569 2.231529 CGATCGGAGGGAGTATCAGTT 58.768 52.381 7.38 0.00 36.25 3.16
1918 2570 3.409570 CGATCGGAGGGAGTATCAGTTA 58.590 50.000 7.38 0.00 36.25 2.24
1919 2571 3.188873 CGATCGGAGGGAGTATCAGTTAC 59.811 52.174 7.38 0.00 36.25 2.50
1920 2572 3.947612 TCGGAGGGAGTATCAGTTACT 57.052 47.619 0.00 0.00 44.04 2.24
1921 2573 3.552875 TCGGAGGGAGTATCAGTTACTG 58.447 50.000 5.94 5.94 41.35 2.74
1922 2574 3.201487 TCGGAGGGAGTATCAGTTACTGA 59.799 47.826 17.87 17.87 44.99 3.41
1923 2575 3.566322 CGGAGGGAGTATCAGTTACTGAG 59.434 52.174 20.12 0.00 44.08 3.35
1924 2576 4.686396 CGGAGGGAGTATCAGTTACTGAGA 60.686 50.000 20.12 13.39 44.08 3.27
1925 2577 5.390387 GGAGGGAGTATCAGTTACTGAGAT 58.610 45.833 20.12 7.41 44.08 2.75
1926 2578 5.475564 GGAGGGAGTATCAGTTACTGAGATC 59.524 48.000 20.12 15.89 44.08 2.75
1927 2579 5.390387 AGGGAGTATCAGTTACTGAGATCC 58.610 45.833 23.69 23.69 44.08 3.36
1928 2580 5.135362 AGGGAGTATCAGTTACTGAGATCCT 59.865 44.000 27.26 22.45 44.08 3.24
1929 2581 6.333168 AGGGAGTATCAGTTACTGAGATCCTA 59.667 42.308 27.26 13.14 44.08 2.94
1930 2582 6.431852 GGGAGTATCAGTTACTGAGATCCTAC 59.568 46.154 27.26 20.75 44.08 3.18
1931 2583 6.431852 GGAGTATCAGTTACTGAGATCCTACC 59.568 46.154 24.11 15.83 44.08 3.18
1932 2584 6.308566 AGTATCAGTTACTGAGATCCTACCC 58.691 44.000 20.12 2.69 44.08 3.69
1933 2585 3.912248 TCAGTTACTGAGATCCTACCCC 58.088 50.000 11.42 0.00 35.39 4.95
1934 2586 2.966516 CAGTTACTGAGATCCTACCCCC 59.033 54.545 6.50 0.00 32.44 5.40
1935 2587 1.962100 GTTACTGAGATCCTACCCCCG 59.038 57.143 0.00 0.00 0.00 5.73
1936 2588 1.526315 TACTGAGATCCTACCCCCGA 58.474 55.000 0.00 0.00 0.00 5.14
1937 2589 0.106116 ACTGAGATCCTACCCCCGAC 60.106 60.000 0.00 0.00 0.00 4.79
1938 2590 0.186386 CTGAGATCCTACCCCCGACT 59.814 60.000 0.00 0.00 0.00 4.18
1939 2591 0.106167 TGAGATCCTACCCCCGACTG 60.106 60.000 0.00 0.00 0.00 3.51
1940 2592 0.828343 GAGATCCTACCCCCGACTGG 60.828 65.000 0.00 0.00 0.00 4.00
1941 2593 1.075450 GATCCTACCCCCGACTGGT 60.075 63.158 0.00 0.00 39.97 4.00
1942 2594 1.382695 ATCCTACCCCCGACTGGTG 60.383 63.158 0.00 0.00 36.57 4.17
1943 2595 3.782443 CCTACCCCCGACTGGTGC 61.782 72.222 0.00 0.00 36.57 5.01
1944 2596 3.000819 CTACCCCCGACTGGTGCA 61.001 66.667 0.00 0.00 36.57 4.57
1945 2597 2.527123 TACCCCCGACTGGTGCAA 60.527 61.111 0.00 0.00 36.57 4.08
1946 2598 2.119484 CTACCCCCGACTGGTGCAAA 62.119 60.000 0.00 0.00 36.57 3.68
1947 2599 1.493854 TACCCCCGACTGGTGCAAAT 61.494 55.000 0.00 0.00 36.57 2.32
1948 2600 1.606313 CCCCCGACTGGTGCAAATT 60.606 57.895 0.00 0.00 0.00 1.82
1949 2601 0.322997 CCCCCGACTGGTGCAAATTA 60.323 55.000 0.00 0.00 0.00 1.40
1950 2602 1.540267 CCCCGACTGGTGCAAATTAA 58.460 50.000 0.00 0.00 0.00 1.40
1951 2603 1.201414 CCCCGACTGGTGCAAATTAAC 59.799 52.381 0.00 0.00 0.00 2.01
1952 2604 1.883275 CCCGACTGGTGCAAATTAACA 59.117 47.619 0.00 0.00 0.00 2.41
1953 2605 2.294791 CCCGACTGGTGCAAATTAACAA 59.705 45.455 0.00 0.00 0.00 2.83
1954 2606 3.305110 CCGACTGGTGCAAATTAACAAC 58.695 45.455 0.00 0.00 0.00 3.32
1955 2607 3.243234 CCGACTGGTGCAAATTAACAACA 60.243 43.478 0.00 0.00 31.41 3.33
1956 2608 4.355437 CGACTGGTGCAAATTAACAACAA 58.645 39.130 0.00 0.00 32.01 2.83
1957 2609 4.800993 CGACTGGTGCAAATTAACAACAAA 59.199 37.500 0.00 0.00 32.01 2.83
1958 2610 5.276161 CGACTGGTGCAAATTAACAACAAAC 60.276 40.000 0.00 0.00 32.01 2.93
1959 2611 4.564769 ACTGGTGCAAATTAACAACAAACG 59.435 37.500 0.00 0.00 32.01 3.60
1960 2612 4.744570 TGGTGCAAATTAACAACAAACGA 58.255 34.783 0.00 0.00 28.52 3.85
1961 2613 4.800993 TGGTGCAAATTAACAACAAACGAG 59.199 37.500 0.00 0.00 28.52 4.18
1962 2614 4.208253 GGTGCAAATTAACAACAAACGAGG 59.792 41.667 0.00 0.00 0.00 4.63
1963 2615 3.799420 TGCAAATTAACAACAAACGAGGC 59.201 39.130 0.00 0.00 0.00 4.70
1964 2616 3.799420 GCAAATTAACAACAAACGAGGCA 59.201 39.130 0.00 0.00 0.00 4.75
1965 2617 4.447389 GCAAATTAACAACAAACGAGGCAT 59.553 37.500 0.00 0.00 0.00 4.40
1966 2618 5.631512 GCAAATTAACAACAAACGAGGCATA 59.368 36.000 0.00 0.00 0.00 3.14
1967 2619 6.399564 GCAAATTAACAACAAACGAGGCATAC 60.400 38.462 0.00 0.00 0.00 2.39
1968 2620 6.569179 AATTAACAACAAACGAGGCATACT 57.431 33.333 0.00 0.00 0.00 2.12
1969 2621 6.569179 ATTAACAACAAACGAGGCATACTT 57.431 33.333 0.00 0.00 0.00 2.24
1970 2622 7.675962 ATTAACAACAAACGAGGCATACTTA 57.324 32.000 0.00 0.00 0.00 2.24
1971 2623 5.352643 AACAACAAACGAGGCATACTTAC 57.647 39.130 0.00 0.00 0.00 2.34
1972 2624 4.382291 ACAACAAACGAGGCATACTTACA 58.618 39.130 0.00 0.00 0.00 2.41
1973 2625 5.001232 ACAACAAACGAGGCATACTTACAT 58.999 37.500 0.00 0.00 0.00 2.29
1974 2626 5.121768 ACAACAAACGAGGCATACTTACATC 59.878 40.000 0.00 0.00 0.00 3.06
1975 2627 4.827692 ACAAACGAGGCATACTTACATCA 58.172 39.130 0.00 0.00 0.00 3.07
1976 2628 4.630069 ACAAACGAGGCATACTTACATCAC 59.370 41.667 0.00 0.00 0.00 3.06
1977 2629 4.465632 AACGAGGCATACTTACATCACA 57.534 40.909 0.00 0.00 0.00 3.58
1978 2630 4.672587 ACGAGGCATACTTACATCACAT 57.327 40.909 0.00 0.00 0.00 3.21
1979 2631 5.784578 ACGAGGCATACTTACATCACATA 57.215 39.130 0.00 0.00 0.00 2.29
1980 2632 6.346477 ACGAGGCATACTTACATCACATAT 57.654 37.500 0.00 0.00 0.00 1.78
1981 2633 6.159293 ACGAGGCATACTTACATCACATATG 58.841 40.000 0.00 0.00 0.00 1.78
1982 2634 6.015434 ACGAGGCATACTTACATCACATATGA 60.015 38.462 10.38 0.00 39.83 2.15
1983 2635 6.309009 CGAGGCATACTTACATCACATATGAC 59.691 42.308 10.38 0.00 37.79 3.06
1984 2636 7.066307 AGGCATACTTACATCACATATGACA 57.934 36.000 10.38 0.00 37.79 3.58
1985 2637 7.508687 AGGCATACTTACATCACATATGACAA 58.491 34.615 10.38 0.00 37.79 3.18
1986 2638 7.658982 AGGCATACTTACATCACATATGACAAG 59.341 37.037 10.38 5.64 37.79 3.16
1987 2639 7.442364 GGCATACTTACATCACATATGACAAGT 59.558 37.037 10.38 10.54 37.79 3.16
1988 2640 8.278408 GCATACTTACATCACATATGACAAGTG 58.722 37.037 10.38 0.00 37.79 3.16
1989 2641 6.668541 ACTTACATCACATATGACAAGTGC 57.331 37.500 10.38 0.00 37.79 4.40
1990 2642 6.409704 ACTTACATCACATATGACAAGTGCT 58.590 36.000 10.38 0.00 37.79 4.40
1991 2643 7.555965 ACTTACATCACATATGACAAGTGCTA 58.444 34.615 10.38 0.00 37.79 3.49
1992 2644 7.492669 ACTTACATCACATATGACAAGTGCTAC 59.507 37.037 10.38 0.00 37.79 3.58
1993 2645 5.982356 ACATCACATATGACAAGTGCTACT 58.018 37.500 10.38 0.00 37.79 2.57
1994 2646 7.112452 ACATCACATATGACAAGTGCTACTA 57.888 36.000 10.38 0.00 37.79 1.82
1995 2647 7.555965 ACATCACATATGACAAGTGCTACTAA 58.444 34.615 10.38 0.00 37.79 2.24
1996 2648 8.040727 ACATCACATATGACAAGTGCTACTAAA 58.959 33.333 10.38 0.00 37.79 1.85
1997 2649 9.049523 CATCACATATGACAAGTGCTACTAAAT 57.950 33.333 10.38 0.00 37.79 1.40
1999 2651 9.529325 TCACATATGACAAGTGCTACTAAATAC 57.471 33.333 10.38 0.00 33.44 1.89
2000 2652 8.480066 CACATATGACAAGTGCTACTAAATACG 58.520 37.037 10.38 0.00 0.00 3.06
2001 2653 5.968387 ATGACAAGTGCTACTAAATACGC 57.032 39.130 0.00 0.00 0.00 4.42
2002 2654 4.178540 TGACAAGTGCTACTAAATACGCC 58.821 43.478 0.00 0.00 0.00 5.68
2003 2655 4.178540 GACAAGTGCTACTAAATACGCCA 58.821 43.478 0.00 0.00 0.00 5.69
2004 2656 4.571919 ACAAGTGCTACTAAATACGCCAA 58.428 39.130 0.00 0.00 0.00 4.52
2005 2657 4.390909 ACAAGTGCTACTAAATACGCCAAC 59.609 41.667 0.00 0.00 0.00 3.77
2006 2658 4.467198 AGTGCTACTAAATACGCCAACT 57.533 40.909 0.00 0.00 0.00 3.16
2007 2659 4.181578 AGTGCTACTAAATACGCCAACTG 58.818 43.478 0.00 0.00 0.00 3.16
2008 2660 3.308866 GTGCTACTAAATACGCCAACTGG 59.691 47.826 0.00 0.00 38.53 4.00
2019 2671 3.204505 CCAACTGGCATGCAACTTG 57.795 52.632 21.36 13.32 0.00 3.16
2020 2672 0.390124 CCAACTGGCATGCAACTTGT 59.610 50.000 21.36 7.21 0.00 3.16
2021 2673 1.202557 CCAACTGGCATGCAACTTGTT 60.203 47.619 21.36 12.70 0.00 2.83
2022 2674 2.035704 CCAACTGGCATGCAACTTGTTA 59.964 45.455 21.36 0.00 0.00 2.41
2023 2675 3.492309 CCAACTGGCATGCAACTTGTTAA 60.492 43.478 21.36 0.00 0.00 2.01
2024 2676 4.309099 CAACTGGCATGCAACTTGTTAAT 58.691 39.130 21.36 0.00 0.00 1.40
2025 2677 5.468592 CAACTGGCATGCAACTTGTTAATA 58.531 37.500 21.36 0.00 0.00 0.98
2026 2678 5.059404 ACTGGCATGCAACTTGTTAATAC 57.941 39.130 21.36 0.00 0.00 1.89
2027 2679 4.766891 ACTGGCATGCAACTTGTTAATACT 59.233 37.500 21.36 0.00 0.00 2.12
2028 2680 5.943416 ACTGGCATGCAACTTGTTAATACTA 59.057 36.000 21.36 0.00 0.00 1.82
2029 2681 6.094048 ACTGGCATGCAACTTGTTAATACTAG 59.906 38.462 21.36 0.00 33.97 2.57
2030 2682 6.176896 TGGCATGCAACTTGTTAATACTAGA 58.823 36.000 21.36 0.00 32.42 2.43
2031 2683 6.093495 TGGCATGCAACTTGTTAATACTAGAC 59.907 38.462 21.36 0.00 32.42 2.59
2032 2684 6.458342 GGCATGCAACTTGTTAATACTAGACC 60.458 42.308 21.36 0.00 32.42 3.85
2033 2685 6.093495 GCATGCAACTTGTTAATACTAGACCA 59.907 38.462 14.21 0.00 32.42 4.02
2034 2686 7.464358 CATGCAACTTGTTAATACTAGACCAC 58.536 38.462 0.00 0.00 32.42 4.16
2035 2687 5.935789 TGCAACTTGTTAATACTAGACCACC 59.064 40.000 0.00 0.00 32.42 4.61
2036 2688 5.063060 GCAACTTGTTAATACTAGACCACCG 59.937 44.000 0.00 0.00 32.42 4.94
2037 2689 6.392354 CAACTTGTTAATACTAGACCACCGA 58.608 40.000 0.00 0.00 32.42 4.69
2038 2690 6.786967 ACTTGTTAATACTAGACCACCGAT 57.213 37.500 0.00 0.00 32.42 4.18
2039 2691 7.886629 ACTTGTTAATACTAGACCACCGATA 57.113 36.000 0.00 0.00 32.42 2.92
2040 2692 8.474710 ACTTGTTAATACTAGACCACCGATAT 57.525 34.615 0.00 0.00 32.42 1.63
2041 2693 8.921205 ACTTGTTAATACTAGACCACCGATATT 58.079 33.333 0.00 0.00 32.42 1.28
2069 2721 9.890352 TGAAATAAATTAAATGGTTTTTGCAGC 57.110 25.926 0.00 0.00 0.00 5.25
2070 2722 9.340695 GAAATAAATTAAATGGTTTTTGCAGCC 57.659 29.630 0.00 0.00 0.00 4.85
2071 2723 7.992754 ATAAATTAAATGGTTTTTGCAGCCA 57.007 28.000 4.32 4.32 36.64 4.75
2072 2724 6.705863 AAATTAAATGGTTTTTGCAGCCAA 57.294 29.167 5.67 0.00 35.74 4.52
2073 2725 5.687770 ATTAAATGGTTTTTGCAGCCAAC 57.312 34.783 5.67 1.77 35.74 3.77
2074 2726 3.280197 AAATGGTTTTTGCAGCCAACT 57.720 38.095 5.67 0.00 35.74 3.16
2075 2727 3.280197 AATGGTTTTTGCAGCCAACTT 57.720 38.095 5.67 0.00 35.74 2.66
2076 2728 2.021355 TGGTTTTTGCAGCCAACTTG 57.979 45.000 0.00 0.00 0.00 3.16
2077 2729 1.277557 TGGTTTTTGCAGCCAACTTGT 59.722 42.857 0.00 0.00 0.00 3.16
2078 2730 2.289945 TGGTTTTTGCAGCCAACTTGTT 60.290 40.909 0.00 0.00 0.00 2.83
2079 2731 2.095692 GGTTTTTGCAGCCAACTTGTTG 59.904 45.455 6.52 6.52 0.00 3.33
2080 2732 2.741517 GTTTTTGCAGCCAACTTGTTGT 59.258 40.909 11.82 0.00 0.00 3.32
2081 2733 2.758736 TTTGCAGCCAACTTGTTGTT 57.241 40.000 11.82 0.00 39.92 2.83
2082 2734 3.876274 TTTGCAGCCAACTTGTTGTTA 57.124 38.095 11.82 0.00 37.07 2.41
2083 2735 2.861462 TGCAGCCAACTTGTTGTTAC 57.139 45.000 11.82 2.49 37.07 2.50
2084 2736 2.374184 TGCAGCCAACTTGTTGTTACT 58.626 42.857 11.82 4.47 37.07 2.24
2085 2737 2.098934 TGCAGCCAACTTGTTGTTACTG 59.901 45.455 16.83 16.83 41.30 2.74
2086 2738 2.099098 GCAGCCAACTTGTTGTTACTGT 59.901 45.455 19.63 0.00 40.87 3.55
2087 2739 3.792124 GCAGCCAACTTGTTGTTACTGTC 60.792 47.826 19.63 13.09 40.87 3.51
2088 2740 3.627577 CAGCCAACTTGTTGTTACTGTCT 59.372 43.478 11.82 0.00 37.30 3.41
2089 2741 3.627577 AGCCAACTTGTTGTTACTGTCTG 59.372 43.478 11.82 0.00 37.07 3.51
2090 2742 3.243068 GCCAACTTGTTGTTACTGTCTGG 60.243 47.826 11.82 0.00 37.07 3.86
2091 2743 3.315191 CCAACTTGTTGTTACTGTCTGGG 59.685 47.826 11.82 0.00 37.07 4.45
2092 2744 3.208747 ACTTGTTGTTACTGTCTGGGG 57.791 47.619 0.00 0.00 0.00 4.96
2093 2745 2.775384 ACTTGTTGTTACTGTCTGGGGA 59.225 45.455 0.00 0.00 0.00 4.81
2094 2746 2.922740 TGTTGTTACTGTCTGGGGAC 57.077 50.000 0.00 0.00 42.42 4.46
2095 2747 1.069513 TGTTGTTACTGTCTGGGGACG 59.930 52.381 0.00 0.00 44.83 4.79
2141 2793 3.947132 CTGCACTCGGCCTCCACTG 62.947 68.421 0.00 0.00 43.89 3.66
2223 4070 7.870588 GATACTGGTCCAAATTAGTATCGAC 57.129 40.000 10.74 0.00 40.92 4.20
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
30 31 9.825972 CGAACATGACATTTTTGTTAGAGTTAT 57.174 29.630 0.00 0.00 33.92 1.89
31 32 9.047371 TCGAACATGACATTTTTGTTAGAGTTA 57.953 29.630 0.00 0.00 33.92 2.24
33 34 7.226720 AGTCGAACATGACATTTTTGTTAGAGT 59.773 33.333 0.00 4.32 41.41 3.24
34 35 7.576236 AGTCGAACATGACATTTTTGTTAGAG 58.424 34.615 0.00 0.00 41.41 2.43
35 36 7.225734 TGAGTCGAACATGACATTTTTGTTAGA 59.774 33.333 0.00 1.15 41.41 2.10
36 37 7.351981 TGAGTCGAACATGACATTTTTGTTAG 58.648 34.615 0.00 0.00 41.41 2.34
38 39 6.130298 TGAGTCGAACATGACATTTTTGTT 57.870 33.333 0.00 0.00 41.41 2.83
40 41 7.627585 ATTTGAGTCGAACATGACATTTTTG 57.372 32.000 0.00 0.00 41.41 2.44
42 43 7.306749 GCAAATTTGAGTCGAACATGACATTTT 60.307 33.333 22.31 0.00 41.41 1.82
44 45 5.630680 GCAAATTTGAGTCGAACATGACATT 59.369 36.000 22.31 0.00 41.41 2.71
45 46 5.156355 GCAAATTTGAGTCGAACATGACAT 58.844 37.500 22.31 0.00 41.41 3.06
46 47 4.536065 GCAAATTTGAGTCGAACATGACA 58.464 39.130 22.31 0.00 41.41 3.58
56 587 4.789012 TGGAAGATGGCAAATTTGAGTC 57.211 40.909 22.31 14.40 0.00 3.36
63 594 3.629398 GTCGAAGATGGAAGATGGCAAAT 59.371 43.478 0.00 0.00 40.67 2.32
64 595 3.009723 GTCGAAGATGGAAGATGGCAAA 58.990 45.455 0.00 0.00 40.67 3.68
65 596 2.027285 TGTCGAAGATGGAAGATGGCAA 60.027 45.455 0.00 0.00 40.67 4.52
66 597 1.554617 TGTCGAAGATGGAAGATGGCA 59.445 47.619 0.00 0.00 40.67 4.92
67 598 2.315925 TGTCGAAGATGGAAGATGGC 57.684 50.000 0.00 0.00 40.67 4.40
68 599 4.194640 ACAATGTCGAAGATGGAAGATGG 58.805 43.478 0.00 0.00 40.67 3.51
69 600 5.114780 AGACAATGTCGAAGATGGAAGATG 58.885 41.667 7.83 0.00 40.67 2.90
72 603 5.410924 TGTAGACAATGTCGAAGATGGAAG 58.589 41.667 7.83 0.00 40.67 3.46
188 742 9.821240 AACTTATTATATGGACCATGGCAAATA 57.179 29.630 17.73 11.52 0.00 1.40
189 743 8.725606 AACTTATTATATGGACCATGGCAAAT 57.274 30.769 17.73 12.39 0.00 2.32
482 1051 6.920758 TGTTGTGGCAAATTTCACACTATTAC 59.079 34.615 17.73 11.48 42.67 1.89
522 1092 2.816204 TTCACACACCATGGCAATTG 57.184 45.000 13.04 4.93 0.00 2.32
643 1230 8.038492 ACTTAGAATTCTTGATTCACTTGAGC 57.962 34.615 14.36 0.00 45.42 4.26
766 1353 3.274288 ACAGAGCTATTTTAGGTGCAGC 58.726 45.455 8.11 8.11 36.51 5.25
834 1421 9.926751 GTTGATGTTCATGTTCATTATAGTCTG 57.073 33.333 0.00 0.00 0.00 3.51
900 1495 4.944317 CCCCCTCTTCTCTACACATTTTTC 59.056 45.833 0.00 0.00 0.00 2.29
906 1501 3.491766 ATTCCCCCTCTTCTCTACACA 57.508 47.619 0.00 0.00 0.00 3.72
926 1521 0.116342 TGCCTGAGGGTGTCTTCCTA 59.884 55.000 0.00 0.00 34.21 2.94
938 1533 3.194329 TGTCAAGTAGTGAGATGCCTGAG 59.806 47.826 0.00 0.00 36.74 3.35
939 1534 3.165071 TGTCAAGTAGTGAGATGCCTGA 58.835 45.455 0.00 0.00 36.74 3.86
955 1558 1.868109 GCTGTGTGTCGCTACTGTCAA 60.868 52.381 0.00 0.00 0.00 3.18
1005 1608 0.615331 CTAGCAAGTCCAGGCCAGAA 59.385 55.000 5.01 0.00 0.00 3.02
1322 1935 1.517257 CATCAGAGTCCGCCGTCAC 60.517 63.158 0.00 0.00 0.00 3.67
1323 1936 2.710902 CCATCAGAGTCCGCCGTCA 61.711 63.158 0.00 0.00 0.00 4.35
1324 1937 2.105128 CCATCAGAGTCCGCCGTC 59.895 66.667 0.00 0.00 0.00 4.79
1325 1938 4.148825 GCCATCAGAGTCCGCCGT 62.149 66.667 0.00 0.00 0.00 5.68
1327 1940 4.148825 ACGCCATCAGAGTCCGCC 62.149 66.667 0.00 0.00 0.00 6.13
1328 1941 2.583593 GACGCCATCAGAGTCCGC 60.584 66.667 0.00 0.00 0.00 5.54
1329 1942 2.278206 CGACGCCATCAGAGTCCG 60.278 66.667 0.00 0.00 0.00 4.79
1330 1943 2.105128 CCGACGCCATCAGAGTCC 59.895 66.667 0.00 0.00 0.00 3.85
1331 1944 1.226717 GACCGACGCCATCAGAGTC 60.227 63.158 0.00 0.00 0.00 3.36
1332 1945 1.938657 CTGACCGACGCCATCAGAGT 61.939 60.000 13.68 0.00 42.07 3.24
1333 1946 1.226802 CTGACCGACGCCATCAGAG 60.227 63.158 13.68 0.00 42.07 3.35
1334 1947 2.885113 CTGACCGACGCCATCAGA 59.115 61.111 13.68 0.00 42.07 3.27
1335 1948 2.887568 GCTGACCGACGCCATCAG 60.888 66.667 14.29 14.29 42.33 2.90
1336 1949 3.356639 GAGCTGACCGACGCCATCA 62.357 63.158 0.00 0.00 0.00 3.07
1337 1950 2.583593 GAGCTGACCGACGCCATC 60.584 66.667 0.00 0.00 0.00 3.51
1338 1951 3.362399 CTGAGCTGACCGACGCCAT 62.362 63.158 0.00 0.00 0.00 4.40
1339 1952 4.056125 CTGAGCTGACCGACGCCA 62.056 66.667 0.00 0.00 0.00 5.69
1379 1992 2.418910 CGAGCTGACCGTCCTGGAT 61.419 63.158 0.00 0.00 42.00 3.41
1382 1995 4.803426 GCCGAGCTGACCGTCCTG 62.803 72.222 0.00 0.00 0.00 3.86
1547 2195 0.327924 CACTGACCCAGCCCACATAA 59.672 55.000 0.00 0.00 34.37 1.90
1584 2234 2.985957 ATGCTCTCTTCCTCTGCTTC 57.014 50.000 0.00 0.00 0.00 3.86
1602 2254 1.942776 CTTTTCCTCCCCAGCCAAAT 58.057 50.000 0.00 0.00 0.00 2.32
1634 2286 2.207590 GTTCGGTAAAAGCTATCCCCG 58.792 52.381 8.13 8.13 36.83 5.73
1671 2323 0.617820 AAGTAGAGGTCCACGGCCAT 60.618 55.000 2.24 0.00 0.00 4.40
1687 2339 5.769662 TGGATTTGAGCACACATCTTAAAGT 59.230 36.000 9.64 0.00 34.69 2.66
1694 2346 3.254166 ACTGTTGGATTTGAGCACACATC 59.746 43.478 2.05 2.05 33.84 3.06
1698 2350 2.929641 TCACTGTTGGATTTGAGCACA 58.070 42.857 0.00 0.00 0.00 4.57
1699 2351 3.988379 TTCACTGTTGGATTTGAGCAC 57.012 42.857 0.00 0.00 0.00 4.40
1700 2352 3.068024 GGTTTCACTGTTGGATTTGAGCA 59.932 43.478 0.00 0.00 0.00 4.26
1701 2353 3.068024 TGGTTTCACTGTTGGATTTGAGC 59.932 43.478 0.00 0.00 0.00 4.26
1702 2354 4.794003 GCTGGTTTCACTGTTGGATTTGAG 60.794 45.833 0.00 0.00 0.00 3.02
1703 2355 3.068024 GCTGGTTTCACTGTTGGATTTGA 59.932 43.478 0.00 0.00 0.00 2.69
1704 2356 3.383761 GCTGGTTTCACTGTTGGATTTG 58.616 45.455 0.00 0.00 0.00 2.32
1705 2357 2.034558 CGCTGGTTTCACTGTTGGATTT 59.965 45.455 0.00 0.00 0.00 2.17
1706 2358 1.608590 CGCTGGTTTCACTGTTGGATT 59.391 47.619 0.00 0.00 0.00 3.01
1707 2359 1.238439 CGCTGGTTTCACTGTTGGAT 58.762 50.000 0.00 0.00 0.00 3.41
1708 2360 0.107410 ACGCTGGTTTCACTGTTGGA 60.107 50.000 0.00 0.00 0.00 3.53
1709 2361 0.738389 AACGCTGGTTTCACTGTTGG 59.262 50.000 0.00 0.00 30.42 3.77
1710 2362 1.400142 TGAACGCTGGTTTCACTGTTG 59.600 47.619 0.00 0.00 36.24 3.33
1711 2363 1.400494 GTGAACGCTGGTTTCACTGTT 59.600 47.619 8.21 0.00 36.24 3.16
1712 2364 1.014352 GTGAACGCTGGTTTCACTGT 58.986 50.000 8.21 0.00 36.24 3.55
1713 2365 0.042188 CGTGAACGCTGGTTTCACTG 60.042 55.000 12.33 4.59 36.24 3.66
1714 2366 0.461339 ACGTGAACGCTGGTTTCACT 60.461 50.000 12.33 0.30 44.43 3.41
1715 2367 0.042448 GACGTGAACGCTGGTTTCAC 60.042 55.000 2.11 5.92 44.43 3.18
1716 2368 0.460459 TGACGTGAACGCTGGTTTCA 60.460 50.000 2.11 0.00 44.43 2.69
1717 2369 0.232303 CTGACGTGAACGCTGGTTTC 59.768 55.000 2.11 0.00 44.43 2.78
1718 2370 0.179094 TCTGACGTGAACGCTGGTTT 60.179 50.000 2.11 0.00 44.43 3.27
1719 2371 0.179094 TTCTGACGTGAACGCTGGTT 60.179 50.000 2.11 0.00 44.43 3.67
1720 2372 0.033504 ATTCTGACGTGAACGCTGGT 59.966 50.000 2.11 0.00 44.43 4.00
1721 2373 0.716108 GATTCTGACGTGAACGCTGG 59.284 55.000 2.11 0.00 44.43 4.85
1722 2374 1.388093 CAGATTCTGACGTGAACGCTG 59.612 52.381 8.00 0.00 44.43 5.18
1723 2375 1.269723 TCAGATTCTGACGTGAACGCT 59.730 47.619 12.38 0.00 44.43 5.07
1724 2376 1.698165 TCAGATTCTGACGTGAACGC 58.302 50.000 12.38 0.00 44.43 4.84
1745 2397 4.084171 GCTTGGACAGTAAAAGTACGGAAC 60.084 45.833 0.00 0.00 35.20 3.62
1746 2398 4.060205 GCTTGGACAGTAAAAGTACGGAA 58.940 43.478 0.00 0.00 35.20 4.30
1747 2399 3.069872 TGCTTGGACAGTAAAAGTACGGA 59.930 43.478 0.00 0.00 35.20 4.69
1748 2400 3.395639 TGCTTGGACAGTAAAAGTACGG 58.604 45.455 0.00 0.00 35.20 4.02
1749 2401 5.412526 TTTGCTTGGACAGTAAAAGTACG 57.587 39.130 0.00 0.00 34.45 3.67
1801 2453 8.871125 AGTAATTCCGAACAGATGGAGTATTAT 58.129 33.333 0.00 0.00 35.26 1.28
1802 2454 8.246430 AGTAATTCCGAACAGATGGAGTATTA 57.754 34.615 0.00 0.00 35.26 0.98
1803 2455 7.125792 AGTAATTCCGAACAGATGGAGTATT 57.874 36.000 0.00 0.00 35.26 1.89
1804 2456 6.732896 AGTAATTCCGAACAGATGGAGTAT 57.267 37.500 0.00 0.00 35.26 2.12
1805 2457 6.070995 ACAAGTAATTCCGAACAGATGGAGTA 60.071 38.462 0.00 0.00 35.26 2.59
1806 2458 5.178797 CAAGTAATTCCGAACAGATGGAGT 58.821 41.667 0.00 0.00 35.26 3.85
1807 2459 5.178797 ACAAGTAATTCCGAACAGATGGAG 58.821 41.667 0.00 0.00 35.26 3.86
1808 2460 5.046591 AGACAAGTAATTCCGAACAGATGGA 60.047 40.000 0.00 0.00 0.00 3.41
1809 2461 5.178797 AGACAAGTAATTCCGAACAGATGG 58.821 41.667 0.00 0.00 0.00 3.51
1810 2462 5.004821 CGAGACAAGTAATTCCGAACAGATG 59.995 44.000 0.00 0.00 0.00 2.90
1811 2463 5.103000 CGAGACAAGTAATTCCGAACAGAT 58.897 41.667 0.00 0.00 0.00 2.90
1812 2464 4.216902 TCGAGACAAGTAATTCCGAACAGA 59.783 41.667 0.00 0.00 0.00 3.41
1813 2465 4.482386 TCGAGACAAGTAATTCCGAACAG 58.518 43.478 0.00 0.00 0.00 3.16
1814 2466 4.508461 TCGAGACAAGTAATTCCGAACA 57.492 40.909 0.00 0.00 0.00 3.18
1815 2467 5.834239 TTTCGAGACAAGTAATTCCGAAC 57.166 39.130 0.00 0.00 34.86 3.95
1816 2468 6.647481 TCATTTTCGAGACAAGTAATTCCGAA 59.353 34.615 0.00 0.00 33.57 4.30
1817 2469 6.160684 TCATTTTCGAGACAAGTAATTCCGA 58.839 36.000 0.00 0.00 0.00 4.55
1818 2470 6.403333 TCATTTTCGAGACAAGTAATTCCG 57.597 37.500 0.00 0.00 0.00 4.30
1819 2471 8.237267 ACATTCATTTTCGAGACAAGTAATTCC 58.763 33.333 0.00 0.00 0.00 3.01
1823 2475 9.653287 AGATACATTCATTTTCGAGACAAGTAA 57.347 29.630 0.00 0.00 0.00 2.24
1825 2477 9.653287 TTAGATACATTCATTTTCGAGACAAGT 57.347 29.630 0.00 0.00 0.00 3.16
1858 2510 9.593565 TCAGAAGTGGATGTATCTAGATGTATT 57.406 33.333 15.79 0.00 0.00 1.89
1859 2511 9.241919 CTCAGAAGTGGATGTATCTAGATGTAT 57.758 37.037 15.79 9.11 0.00 2.29
1860 2512 8.440771 TCTCAGAAGTGGATGTATCTAGATGTA 58.559 37.037 15.79 4.44 0.00 2.29
1861 2513 7.230510 GTCTCAGAAGTGGATGTATCTAGATGT 59.769 40.741 15.79 1.25 0.00 3.06
1862 2514 7.230309 TGTCTCAGAAGTGGATGTATCTAGATG 59.770 40.741 15.79 0.00 0.00 2.90
1863 2515 7.293828 TGTCTCAGAAGTGGATGTATCTAGAT 58.706 38.462 10.73 10.73 0.00 1.98
1864 2516 6.663734 TGTCTCAGAAGTGGATGTATCTAGA 58.336 40.000 0.00 0.00 0.00 2.43
1865 2517 6.951062 TGTCTCAGAAGTGGATGTATCTAG 57.049 41.667 0.00 0.00 0.00 2.43
1866 2518 6.892456 ACTTGTCTCAGAAGTGGATGTATCTA 59.108 38.462 0.00 0.00 32.30 1.98
1867 2519 5.719085 ACTTGTCTCAGAAGTGGATGTATCT 59.281 40.000 0.00 0.00 32.30 1.98
1868 2520 5.971763 ACTTGTCTCAGAAGTGGATGTATC 58.028 41.667 0.00 0.00 32.30 2.24
1869 2521 7.482169 TTACTTGTCTCAGAAGTGGATGTAT 57.518 36.000 0.00 0.00 35.30 2.29
1870 2522 6.911250 TTACTTGTCTCAGAAGTGGATGTA 57.089 37.500 0.00 0.00 35.30 2.29
1871 2523 5.808366 TTACTTGTCTCAGAAGTGGATGT 57.192 39.130 0.00 0.00 35.30 3.06
1872 2524 6.314896 GGAATTACTTGTCTCAGAAGTGGATG 59.685 42.308 0.00 0.00 35.30 3.51
1873 2525 6.410540 GGAATTACTTGTCTCAGAAGTGGAT 58.589 40.000 0.00 0.00 35.30 3.41
1874 2526 5.566826 CGGAATTACTTGTCTCAGAAGTGGA 60.567 44.000 0.00 0.00 35.30 4.02
1875 2527 4.627467 CGGAATTACTTGTCTCAGAAGTGG 59.373 45.833 0.00 0.00 35.30 4.00
1876 2528 5.470368 TCGGAATTACTTGTCTCAGAAGTG 58.530 41.667 0.00 0.00 35.30 3.16
1877 2529 5.723672 TCGGAATTACTTGTCTCAGAAGT 57.276 39.130 0.00 0.00 37.43 3.01
1878 2530 5.457148 CGATCGGAATTACTTGTCTCAGAAG 59.543 44.000 7.38 0.00 0.00 2.85
1879 2531 5.340803 CGATCGGAATTACTTGTCTCAGAA 58.659 41.667 7.38 0.00 0.00 3.02
1880 2532 4.202020 CCGATCGGAATTACTTGTCTCAGA 60.202 45.833 30.62 0.00 37.50 3.27
1881 2533 4.045104 CCGATCGGAATTACTTGTCTCAG 58.955 47.826 30.62 0.00 37.50 3.35
1882 2534 3.697542 TCCGATCGGAATTACTTGTCTCA 59.302 43.478 33.96 6.33 42.05 3.27
1883 2535 4.291783 CTCCGATCGGAATTACTTGTCTC 58.708 47.826 34.77 0.00 44.66 3.36
1884 2536 3.068307 CCTCCGATCGGAATTACTTGTCT 59.932 47.826 34.77 0.00 44.66 3.41
1885 2537 3.381949 CCTCCGATCGGAATTACTTGTC 58.618 50.000 34.77 0.00 44.66 3.18
1886 2538 2.102588 CCCTCCGATCGGAATTACTTGT 59.897 50.000 34.77 0.00 44.66 3.16
1887 2539 2.364324 TCCCTCCGATCGGAATTACTTG 59.636 50.000 34.77 21.71 44.66 3.16
1888 2540 2.628657 CTCCCTCCGATCGGAATTACTT 59.371 50.000 34.77 0.00 44.66 2.24
1889 2541 2.240279 CTCCCTCCGATCGGAATTACT 58.760 52.381 34.77 0.00 44.66 2.24
1890 2542 1.962100 ACTCCCTCCGATCGGAATTAC 59.038 52.381 34.77 0.00 44.66 1.89
1891 2543 2.376695 ACTCCCTCCGATCGGAATTA 57.623 50.000 34.77 21.64 44.66 1.40
1892 2544 2.376695 TACTCCCTCCGATCGGAATT 57.623 50.000 34.77 18.41 44.66 2.17
1893 2545 2.225041 TGATACTCCCTCCGATCGGAAT 60.225 50.000 34.77 24.61 44.66 3.01
1894 2546 1.144298 TGATACTCCCTCCGATCGGAA 59.856 52.381 34.77 21.06 44.66 4.30
1895 2547 0.769247 TGATACTCCCTCCGATCGGA 59.231 55.000 33.55 33.55 42.90 4.55
1896 2548 1.169577 CTGATACTCCCTCCGATCGG 58.830 60.000 28.62 28.62 0.00 4.18
1897 2549 1.898902 ACTGATACTCCCTCCGATCG 58.101 55.000 8.51 8.51 0.00 3.69
1898 2550 4.216687 CAGTAACTGATACTCCCTCCGATC 59.783 50.000 0.00 0.00 43.12 3.69
1899 2551 4.141228 TCAGTAACTGATACTCCCTCCGAT 60.141 45.833 0.00 0.00 43.12 4.18
1900 2552 3.201487 TCAGTAACTGATACTCCCTCCGA 59.799 47.826 0.00 0.00 43.12 4.55
1901 2553 3.552875 TCAGTAACTGATACTCCCTCCG 58.447 50.000 0.00 0.00 43.12 4.63
1902 2554 4.794334 TCTCAGTAACTGATACTCCCTCC 58.206 47.826 0.00 0.00 43.12 4.30
1903 2555 5.475564 GGATCTCAGTAACTGATACTCCCTC 59.524 48.000 0.00 0.00 43.12 4.30
1904 2556 5.135362 AGGATCTCAGTAACTGATACTCCCT 59.865 44.000 0.00 0.00 43.12 4.20
1905 2557 5.390387 AGGATCTCAGTAACTGATACTCCC 58.610 45.833 0.00 0.00 43.12 4.30
1906 2558 6.431852 GGTAGGATCTCAGTAACTGATACTCC 59.568 46.154 0.00 0.00 43.12 3.85
1907 2559 6.431852 GGGTAGGATCTCAGTAACTGATACTC 59.568 46.154 0.00 0.00 43.12 2.59
1908 2560 6.308566 GGGTAGGATCTCAGTAACTGATACT 58.691 44.000 0.00 0.04 45.95 2.12
1909 2561 5.477637 GGGGTAGGATCTCAGTAACTGATAC 59.522 48.000 0.00 0.00 39.92 2.24
1910 2562 5.459241 GGGGGTAGGATCTCAGTAACTGATA 60.459 48.000 0.00 0.00 39.92 2.15
1911 2563 4.484912 GGGGTAGGATCTCAGTAACTGAT 58.515 47.826 0.00 0.00 39.92 2.90
1912 2564 3.373877 GGGGGTAGGATCTCAGTAACTGA 60.374 52.174 0.00 0.00 38.25 3.41
1913 2565 2.966516 GGGGGTAGGATCTCAGTAACTG 59.033 54.545 0.00 0.00 0.00 3.16
1914 2566 2.424523 CGGGGGTAGGATCTCAGTAACT 60.425 54.545 0.00 0.00 0.00 2.24
1915 2567 1.962100 CGGGGGTAGGATCTCAGTAAC 59.038 57.143 0.00 0.00 0.00 2.50
1916 2568 1.854939 TCGGGGGTAGGATCTCAGTAA 59.145 52.381 0.00 0.00 0.00 2.24
1917 2569 1.144503 GTCGGGGGTAGGATCTCAGTA 59.855 57.143 0.00 0.00 0.00 2.74
1918 2570 0.106116 GTCGGGGGTAGGATCTCAGT 60.106 60.000 0.00 0.00 0.00 3.41
1919 2571 0.186386 AGTCGGGGGTAGGATCTCAG 59.814 60.000 0.00 0.00 0.00 3.35
1920 2572 0.106167 CAGTCGGGGGTAGGATCTCA 60.106 60.000 0.00 0.00 0.00 3.27
1921 2573 0.828343 CCAGTCGGGGGTAGGATCTC 60.828 65.000 0.00 0.00 0.00 2.75
1922 2574 1.233369 CCAGTCGGGGGTAGGATCT 59.767 63.158 0.00 0.00 0.00 2.75
1923 2575 1.075450 ACCAGTCGGGGGTAGGATC 60.075 63.158 0.00 0.00 42.91 3.36
1924 2576 1.382695 CACCAGTCGGGGGTAGGAT 60.383 63.158 0.00 0.00 42.91 3.24
1925 2577 2.038329 CACCAGTCGGGGGTAGGA 59.962 66.667 0.00 0.00 42.91 2.94
1926 2578 3.782443 GCACCAGTCGGGGGTAGG 61.782 72.222 0.00 0.00 44.47 3.18
1927 2579 2.119484 TTTGCACCAGTCGGGGGTAG 62.119 60.000 0.00 0.00 44.47 3.18
1928 2580 1.493854 ATTTGCACCAGTCGGGGGTA 61.494 55.000 0.00 0.00 44.47 3.69
1929 2581 2.366153 AATTTGCACCAGTCGGGGGT 62.366 55.000 0.00 0.00 44.47 4.95
1930 2582 0.322997 TAATTTGCACCAGTCGGGGG 60.323 55.000 0.00 0.00 45.93 5.40
1931 2583 1.201414 GTTAATTTGCACCAGTCGGGG 59.799 52.381 0.00 0.00 42.91 5.73
1932 2584 1.883275 TGTTAATTTGCACCAGTCGGG 59.117 47.619 0.00 0.00 44.81 5.14
1933 2585 3.243234 TGTTGTTAATTTGCACCAGTCGG 60.243 43.478 0.00 0.00 38.77 4.79
1934 2586 3.958704 TGTTGTTAATTTGCACCAGTCG 58.041 40.909 0.00 0.00 0.00 4.18
1935 2587 5.276161 CGTTTGTTGTTAATTTGCACCAGTC 60.276 40.000 0.00 0.00 0.00 3.51
1936 2588 4.564769 CGTTTGTTGTTAATTTGCACCAGT 59.435 37.500 0.00 0.00 0.00 4.00
1937 2589 4.800993 TCGTTTGTTGTTAATTTGCACCAG 59.199 37.500 0.00 0.00 0.00 4.00
1938 2590 4.744570 TCGTTTGTTGTTAATTTGCACCA 58.255 34.783 0.00 0.00 0.00 4.17
1939 2591 4.208253 CCTCGTTTGTTGTTAATTTGCACC 59.792 41.667 0.00 0.00 0.00 5.01
1940 2592 4.317769 GCCTCGTTTGTTGTTAATTTGCAC 60.318 41.667 0.00 0.00 0.00 4.57
1941 2593 3.799420 GCCTCGTTTGTTGTTAATTTGCA 59.201 39.130 0.00 0.00 0.00 4.08
1942 2594 3.799420 TGCCTCGTTTGTTGTTAATTTGC 59.201 39.130 0.00 0.00 0.00 3.68
1943 2595 6.861055 AGTATGCCTCGTTTGTTGTTAATTTG 59.139 34.615 0.00 0.00 0.00 2.32
1944 2596 6.977213 AGTATGCCTCGTTTGTTGTTAATTT 58.023 32.000 0.00 0.00 0.00 1.82
1945 2597 6.569179 AGTATGCCTCGTTTGTTGTTAATT 57.431 33.333 0.00 0.00 0.00 1.40
1946 2598 6.569179 AAGTATGCCTCGTTTGTTGTTAAT 57.431 33.333 0.00 0.00 0.00 1.40
1947 2599 6.482641 TGTAAGTATGCCTCGTTTGTTGTTAA 59.517 34.615 0.00 0.00 0.00 2.01
1948 2600 5.990386 TGTAAGTATGCCTCGTTTGTTGTTA 59.010 36.000 0.00 0.00 0.00 2.41
1949 2601 4.817464 TGTAAGTATGCCTCGTTTGTTGTT 59.183 37.500 0.00 0.00 0.00 2.83
1950 2602 4.382291 TGTAAGTATGCCTCGTTTGTTGT 58.618 39.130 0.00 0.00 0.00 3.32
1951 2603 5.121611 TGATGTAAGTATGCCTCGTTTGTTG 59.878 40.000 0.00 0.00 0.00 3.33
1952 2604 5.121768 GTGATGTAAGTATGCCTCGTTTGTT 59.878 40.000 0.00 0.00 0.00 2.83
1953 2605 4.630069 GTGATGTAAGTATGCCTCGTTTGT 59.370 41.667 0.00 0.00 0.00 2.83
1954 2606 4.629634 TGTGATGTAAGTATGCCTCGTTTG 59.370 41.667 0.00 0.00 0.00 2.93
1955 2607 4.827692 TGTGATGTAAGTATGCCTCGTTT 58.172 39.130 0.00 0.00 0.00 3.60
1956 2608 4.465632 TGTGATGTAAGTATGCCTCGTT 57.534 40.909 0.00 0.00 0.00 3.85
1957 2609 4.672587 ATGTGATGTAAGTATGCCTCGT 57.327 40.909 0.00 0.00 0.00 4.18
1958 2610 6.309009 GTCATATGTGATGTAAGTATGCCTCG 59.691 42.308 1.90 0.00 36.60 4.63
1959 2611 7.154656 TGTCATATGTGATGTAAGTATGCCTC 58.845 38.462 1.90 0.00 36.60 4.70
1960 2612 7.066307 TGTCATATGTGATGTAAGTATGCCT 57.934 36.000 1.90 0.00 36.60 4.75
1961 2613 7.442364 ACTTGTCATATGTGATGTAAGTATGCC 59.558 37.037 13.87 0.00 35.76 4.40
1962 2614 8.278408 CACTTGTCATATGTGATGTAAGTATGC 58.722 37.037 14.59 0.00 35.76 3.14
1963 2615 8.278408 GCACTTGTCATATGTGATGTAAGTATG 58.722 37.037 14.59 8.54 35.76 2.39
1964 2616 8.206867 AGCACTTGTCATATGTGATGTAAGTAT 58.793 33.333 14.59 7.94 35.76 2.12
1965 2617 7.555965 AGCACTTGTCATATGTGATGTAAGTA 58.444 34.615 14.59 0.00 35.76 2.24
1966 2618 6.409704 AGCACTTGTCATATGTGATGTAAGT 58.590 36.000 1.90 11.30 36.85 2.24
1967 2619 6.915544 AGCACTTGTCATATGTGATGTAAG 57.084 37.500 1.90 4.35 36.76 2.34
1968 2620 7.555965 AGTAGCACTTGTCATATGTGATGTAA 58.444 34.615 1.90 0.00 36.76 2.41
1969 2621 7.112452 AGTAGCACTTGTCATATGTGATGTA 57.888 36.000 1.90 0.00 36.76 2.29
1970 2622 5.982356 AGTAGCACTTGTCATATGTGATGT 58.018 37.500 1.90 0.00 36.76 3.06
1971 2623 8.424274 TTTAGTAGCACTTGTCATATGTGATG 57.576 34.615 1.90 0.00 36.76 3.07
1973 2625 9.529325 GTATTTAGTAGCACTTGTCATATGTGA 57.471 33.333 1.90 0.00 36.76 3.58
1974 2626 8.480066 CGTATTTAGTAGCACTTGTCATATGTG 58.520 37.037 1.90 0.00 37.47 3.21
1975 2627 7.169308 GCGTATTTAGTAGCACTTGTCATATGT 59.831 37.037 1.90 0.00 0.00 2.29
1976 2628 7.359264 GGCGTATTTAGTAGCACTTGTCATATG 60.359 40.741 0.00 0.00 0.00 1.78
1977 2629 6.645415 GGCGTATTTAGTAGCACTTGTCATAT 59.355 38.462 0.00 0.00 0.00 1.78
1978 2630 5.981315 GGCGTATTTAGTAGCACTTGTCATA 59.019 40.000 0.00 0.00 0.00 2.15
1979 2631 4.809426 GGCGTATTTAGTAGCACTTGTCAT 59.191 41.667 0.00 0.00 0.00 3.06
1980 2632 4.178540 GGCGTATTTAGTAGCACTTGTCA 58.821 43.478 0.00 0.00 0.00 3.58
1981 2633 4.178540 TGGCGTATTTAGTAGCACTTGTC 58.821 43.478 0.00 0.00 0.00 3.18
1982 2634 4.196626 TGGCGTATTTAGTAGCACTTGT 57.803 40.909 0.00 0.00 0.00 3.16
1983 2635 4.630069 AGTTGGCGTATTTAGTAGCACTTG 59.370 41.667 0.00 0.00 0.00 3.16
1984 2636 4.630069 CAGTTGGCGTATTTAGTAGCACTT 59.370 41.667 0.00 0.00 0.00 3.16
1985 2637 4.181578 CAGTTGGCGTATTTAGTAGCACT 58.818 43.478 0.00 0.00 0.00 4.40
1986 2638 3.308866 CCAGTTGGCGTATTTAGTAGCAC 59.691 47.826 0.00 0.00 0.00 4.40
1987 2639 3.527533 CCAGTTGGCGTATTTAGTAGCA 58.472 45.455 0.00 0.00 0.00 3.49
2001 2653 0.390124 ACAAGTTGCATGCCAGTTGG 59.610 50.000 31.51 19.21 38.53 3.77
2002 2654 2.228138 AACAAGTTGCATGCCAGTTG 57.772 45.000 28.60 28.60 0.00 3.16
2003 2655 4.605640 ATTAACAAGTTGCATGCCAGTT 57.394 36.364 16.68 10.90 0.00 3.16
2004 2656 4.766891 AGTATTAACAAGTTGCATGCCAGT 59.233 37.500 16.68 3.81 0.00 4.00
2005 2657 5.314923 AGTATTAACAAGTTGCATGCCAG 57.685 39.130 16.68 2.80 0.00 4.85
2006 2658 6.093495 GTCTAGTATTAACAAGTTGCATGCCA 59.907 38.462 16.68 0.00 0.00 4.92
2007 2659 6.458342 GGTCTAGTATTAACAAGTTGCATGCC 60.458 42.308 16.68 0.00 0.00 4.40
2008 2660 6.093495 TGGTCTAGTATTAACAAGTTGCATGC 59.907 38.462 11.82 11.82 0.00 4.06
2009 2661 7.414098 GGTGGTCTAGTATTAACAAGTTGCATG 60.414 40.741 1.81 0.00 0.00 4.06
2010 2662 6.598064 GGTGGTCTAGTATTAACAAGTTGCAT 59.402 38.462 1.81 0.00 0.00 3.96
2011 2663 5.935789 GGTGGTCTAGTATTAACAAGTTGCA 59.064 40.000 1.81 0.00 0.00 4.08
2012 2664 5.063060 CGGTGGTCTAGTATTAACAAGTTGC 59.937 44.000 1.81 0.00 0.00 4.17
2013 2665 6.392354 TCGGTGGTCTAGTATTAACAAGTTG 58.608 40.000 0.00 0.00 0.00 3.16
2014 2666 6.594788 TCGGTGGTCTAGTATTAACAAGTT 57.405 37.500 0.00 0.00 0.00 2.66
2015 2667 6.786967 ATCGGTGGTCTAGTATTAACAAGT 57.213 37.500 0.00 0.00 0.00 3.16
2043 2695 9.890352 GCTGCAAAAACCATTTAATTTATTTCA 57.110 25.926 0.00 0.00 0.00 2.69
2044 2696 9.340695 GGCTGCAAAAACCATTTAATTTATTTC 57.659 29.630 0.50 0.00 0.00 2.17
2045 2697 8.854117 TGGCTGCAAAAACCATTTAATTTATTT 58.146 25.926 0.50 0.00 0.00 1.40
2046 2698 8.401490 TGGCTGCAAAAACCATTTAATTTATT 57.599 26.923 0.50 0.00 0.00 1.40
2047 2699 7.992754 TGGCTGCAAAAACCATTTAATTTAT 57.007 28.000 0.50 0.00 0.00 1.40
2048 2700 7.500559 AGTTGGCTGCAAAAACCATTTAATTTA 59.499 29.630 0.50 0.00 32.39 1.40
2049 2701 6.320926 AGTTGGCTGCAAAAACCATTTAATTT 59.679 30.769 0.50 0.00 32.39 1.82
2050 2702 5.827267 AGTTGGCTGCAAAAACCATTTAATT 59.173 32.000 0.50 0.00 32.39 1.40
2051 2703 5.375773 AGTTGGCTGCAAAAACCATTTAAT 58.624 33.333 0.50 0.00 32.39 1.40
2052 2704 4.775236 AGTTGGCTGCAAAAACCATTTAA 58.225 34.783 0.50 0.00 32.39 1.52
2053 2705 4.414337 AGTTGGCTGCAAAAACCATTTA 57.586 36.364 0.50 0.00 32.39 1.40
2054 2706 3.280197 AGTTGGCTGCAAAAACCATTT 57.720 38.095 0.50 0.00 32.39 2.32
2055 2707 2.944349 CAAGTTGGCTGCAAAAACCATT 59.056 40.909 0.50 0.00 32.39 3.16
2056 2708 2.093021 ACAAGTTGGCTGCAAAAACCAT 60.093 40.909 7.96 0.00 32.39 3.55
2057 2709 1.277557 ACAAGTTGGCTGCAAAAACCA 59.722 42.857 7.96 0.00 0.00 3.67
2058 2710 2.022764 ACAAGTTGGCTGCAAAAACC 57.977 45.000 7.96 0.00 0.00 3.27
2059 2711 2.741517 ACAACAAGTTGGCTGCAAAAAC 59.258 40.909 16.45 3.00 44.45 2.43
2060 2712 3.051081 ACAACAAGTTGGCTGCAAAAA 57.949 38.095 16.45 0.00 44.45 1.94
2061 2713 2.758736 ACAACAAGTTGGCTGCAAAA 57.241 40.000 16.45 0.00 44.45 2.44
2062 2714 2.758736 AACAACAAGTTGGCTGCAAA 57.241 40.000 16.45 0.00 44.45 3.68
2063 2715 2.757868 AGTAACAACAAGTTGGCTGCAA 59.242 40.909 16.45 0.00 44.45 4.08
2064 2716 2.098934 CAGTAACAACAAGTTGGCTGCA 59.901 45.455 16.45 0.00 44.45 4.41
2065 2717 2.099098 ACAGTAACAACAAGTTGGCTGC 59.901 45.455 22.12 12.48 42.78 5.25
2066 2718 3.627577 AGACAGTAACAACAAGTTGGCTG 59.372 43.478 21.31 21.31 44.45 4.85
2067 2719 3.627577 CAGACAGTAACAACAAGTTGGCT 59.372 43.478 16.45 8.90 44.45 4.75
2068 2720 3.243068 CCAGACAGTAACAACAAGTTGGC 60.243 47.826 16.45 7.01 44.45 4.52
2069 2721 3.315191 CCCAGACAGTAACAACAAGTTGG 59.685 47.826 16.45 1.93 44.45 3.77
2070 2722 3.315191 CCCCAGACAGTAACAACAAGTTG 59.685 47.826 11.16 11.16 45.58 3.16
2071 2723 3.201266 TCCCCAGACAGTAACAACAAGTT 59.799 43.478 0.00 0.00 44.27 2.66
2072 2724 2.775384 TCCCCAGACAGTAACAACAAGT 59.225 45.455 0.00 0.00 0.00 3.16
2073 2725 3.139077 GTCCCCAGACAGTAACAACAAG 58.861 50.000 0.00 0.00 42.99 3.16
2074 2726 2.484065 CGTCCCCAGACAGTAACAACAA 60.484 50.000 0.00 0.00 43.73 2.83
2075 2727 1.069513 CGTCCCCAGACAGTAACAACA 59.930 52.381 0.00 0.00 43.73 3.33
2076 2728 1.607251 CCGTCCCCAGACAGTAACAAC 60.607 57.143 0.00 0.00 43.73 3.32
2077 2729 0.682852 CCGTCCCCAGACAGTAACAA 59.317 55.000 0.00 0.00 43.73 2.83
2078 2730 1.823169 GCCGTCCCCAGACAGTAACA 61.823 60.000 0.00 0.00 43.73 2.41
2079 2731 1.079336 GCCGTCCCCAGACAGTAAC 60.079 63.158 0.00 0.00 43.73 2.50
2080 2732 2.288025 GGCCGTCCCCAGACAGTAA 61.288 63.158 0.00 0.00 43.73 2.24
2081 2733 2.682494 GGCCGTCCCCAGACAGTA 60.682 66.667 0.00 0.00 43.73 2.74
2089 2741 4.626081 CATCATCCGGCCGTCCCC 62.626 72.222 26.12 0.00 0.00 4.81
2090 2742 1.827399 ATACATCATCCGGCCGTCCC 61.827 60.000 26.12 0.00 0.00 4.46
2091 2743 0.034896 AATACATCATCCGGCCGTCC 59.965 55.000 26.12 0.00 0.00 4.79
2092 2744 1.531149 CAAATACATCATCCGGCCGTC 59.469 52.381 26.12 0.00 0.00 4.79
2093 2745 1.140052 TCAAATACATCATCCGGCCGT 59.860 47.619 26.12 2.55 0.00 5.68
2094 2746 1.531149 GTCAAATACATCATCCGGCCG 59.469 52.381 21.04 21.04 0.00 6.13
2095 2747 1.531149 CGTCAAATACATCATCCGGCC 59.469 52.381 0.00 0.00 0.00 6.13
2096 2748 1.069906 GCGTCAAATACATCATCCGGC 60.070 52.381 0.00 0.00 0.00 6.13
2141 2793 3.356290 ACATGGCAATGGTAGGTTTCTC 58.644 45.455 5.94 0.00 38.19 2.87
2196 4043 9.358406 TCGATACTAATTTGGACCAGTATCTTA 57.642 33.333 20.30 11.10 43.84 2.10


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.