Multiple sequence alignment - TraesCS2B01G610100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G610100 chr2B 100.000 3974 0 0 1 3974 789789124 789793097 0.000000e+00 7339.0
1 TraesCS2B01G610100 chr2B 87.542 1196 106 21 1838 3021 790229044 790227880 0.000000e+00 1343.0
2 TraesCS2B01G610100 chr2B 81.266 1185 159 35 1835 3000 790105008 790106148 0.000000e+00 900.0
3 TraesCS2B01G610100 chr2B 84.651 873 86 23 993 1829 790229970 790229110 0.000000e+00 826.0
4 TraesCS2B01G610100 chr2B 93.537 294 18 1 3294 3587 790227686 790227394 1.700000e-118 436.0
5 TraesCS2B01G610100 chr2B 79.273 550 65 28 988 1499 790104099 790104637 4.920000e-89 339.0
6 TraesCS2B01G610100 chr2B 95.322 171 7 1 5 175 490342846 490343015 1.820000e-68 270.0
7 TraesCS2B01G610100 chr2B 90.361 166 13 3 3796 3960 790227003 790226840 8.650000e-52 215.0
8 TraesCS2B01G610100 chr2B 93.007 143 9 1 506 647 107224755 107224897 1.450000e-49 207.0
9 TraesCS2B01G610100 chr2B 93.525 139 9 0 505 643 768360824 768360686 1.450000e-49 207.0
10 TraesCS2B01G610100 chr2B 92.361 144 9 2 506 647 116817930 116818073 1.870000e-48 204.0
11 TraesCS2B01G610100 chr2B 83.908 174 16 7 3583 3745 790227365 790227193 5.320000e-34 156.0
12 TraesCS2B01G610100 chr2B 97.297 37 1 0 3707 3743 790227286 790227250 3.320000e-06 63.9
13 TraesCS2B01G610100 chr2D 95.755 1390 51 3 1838 3227 645816223 645814842 0.000000e+00 2233.0
14 TraesCS2B01G610100 chr2D 94.887 1330 61 6 1841 3165 645791852 645793179 0.000000e+00 2073.0
15 TraesCS2B01G610100 chr2D 87.687 1405 119 24 1835 3227 645723562 645724924 0.000000e+00 1587.0
16 TraesCS2B01G610100 chr2D 88.365 1040 68 24 817 1829 645788273 645789286 0.000000e+00 1201.0
17 TraesCS2B01G610100 chr2D 81.803 1187 165 26 1838 3000 645612964 645611805 0.000000e+00 948.0
18 TraesCS2B01G610100 chr2D 87.852 782 79 8 1838 2618 645560220 645559454 0.000000e+00 904.0
19 TraesCS2B01G610100 chr2D 87.888 677 49 7 1174 1829 645816946 645816282 0.000000e+00 765.0
20 TraesCS2B01G610100 chr2D 81.451 841 84 21 1010 1829 645722710 645723499 1.210000e-174 623.0
21 TraesCS2B01G610100 chr2D 94.536 366 17 2 3224 3588 645794601 645794964 2.680000e-156 562.0
22 TraesCS2B01G610100 chr2D 87.010 485 53 6 1345 1829 645560784 645560310 4.520000e-149 538.0
23 TraesCS2B01G610100 chr2D 94.294 333 19 0 176 508 645768085 645768417 9.850000e-141 510.0
24 TraesCS2B01G610100 chr2D 88.915 424 15 7 3583 3974 645794994 645795417 9.920000e-136 494.0
25 TraesCS2B01G610100 chr2D 92.926 311 21 1 3277 3587 645726042 645726351 6.060000e-123 451.0
26 TraesCS2B01G610100 chr2D 88.809 277 28 2 3277 3551 645725454 645725729 1.770000e-88 337.0
27 TraesCS2B01G610100 chr2D 81.839 435 33 19 3583 3972 645726380 645726813 1.380000e-84 324.0
28 TraesCS2B01G610100 chr2D 83.180 327 28 3 1010 1336 645817083 645816784 1.410000e-69 274.0
29 TraesCS2B01G610100 chr2D 93.122 189 8 3 631 817 645768415 645768600 5.060000e-69 272.0
30 TraesCS2B01G610100 chr2D 90.000 110 8 3 631 739 645714158 645714265 5.360000e-29 139.0
31 TraesCS2B01G610100 chr2D 90.000 110 7 4 631 739 645761183 645761289 5.360000e-29 139.0
32 TraesCS2B01G610100 chr2D 97.101 69 2 0 3164 3232 645793554 645793622 2.510000e-22 117.0
33 TraesCS2B01G610100 chr2D 78.231 147 23 9 2606 2752 131642037 131641900 7.080000e-13 86.1
34 TraesCS2B01G610100 chr2D 81.905 105 13 3 2651 2752 462241294 462241395 2.540000e-12 84.2
35 TraesCS2B01G610100 chr2D 95.652 46 2 0 2710 2755 523359938 523359893 1.530000e-09 75.0
36 TraesCS2B01G610100 chr2D 97.297 37 1 0 3707 3743 645726459 645726495 3.320000e-06 63.9
37 TraesCS2B01G610100 chr2A 95.316 1281 60 0 1952 3232 771501458 771500178 0.000000e+00 2034.0
38 TraesCS2B01G610100 chr2A 82.447 1185 162 25 1840 3000 771126597 771125435 0.000000e+00 994.0
39 TraesCS2B01G610100 chr2A 82.295 1124 160 23 1899 3000 771073912 771072806 0.000000e+00 937.0
40 TraesCS2B01G610100 chr2A 82.058 1137 155 23 1897 3000 771345709 771346829 0.000000e+00 924.0
41 TraesCS2B01G610100 chr2A 89.763 674 35 14 1174 1829 771502128 771501471 0.000000e+00 832.0
42 TraesCS2B01G610100 chr2A 87.811 402 25 6 3583 3974 771496971 771496584 2.180000e-122 449.0
43 TraesCS2B01G610100 chr2A 88.411 302 16 5 1051 1336 771127387 771127089 2.940000e-91 346.0
44 TraesCS2B01G610100 chr2A 94.359 195 9 2 3394 3587 771497195 771497002 8.350000e-77 298.0
45 TraesCS2B01G610100 chr2A 84.400 250 31 4 987 1232 771074942 771074697 5.130000e-59 239.0
46 TraesCS2B01G610100 chr2A 92.308 130 9 1 3224 3353 771497685 771497557 2.440000e-42 183.0
47 TraesCS2B01G610100 chr2A 86.486 148 11 4 816 962 771502509 771502370 1.910000e-33 154.0
48 TraesCS2B01G610100 chr2A 91.954 87 6 1 3465 3551 771497717 771497632 1.940000e-23 121.0
49 TraesCS2B01G610100 chr1D 95.349 172 8 0 5 176 140047852 140048023 1.410000e-69 274.0
50 TraesCS2B01G610100 chr1D 95.322 171 8 0 5 175 92955618 92955448 5.060000e-69 272.0
51 TraesCS2B01G610100 chr4B 95.349 172 7 1 5 175 58745766 58745595 5.060000e-69 272.0
52 TraesCS2B01G610100 chr4B 92.701 137 10 0 506 642 82019122 82019258 8.710000e-47 198.0
53 TraesCS2B01G610100 chr1B 95.322 171 8 0 5 175 303227524 303227354 5.060000e-69 272.0
54 TraesCS2B01G610100 chr1B 97.638 127 3 0 506 632 213904754 213904628 6.690000e-53 219.0
55 TraesCS2B01G610100 chr1B 90.845 142 11 2 493 632 151841105 151841246 5.240000e-44 189.0
56 TraesCS2B01G610100 chr1B 89.404 151 11 5 482 632 542711476 542711331 6.780000e-43 185.0
57 TraesCS2B01G610100 chr1B 82.313 147 20 6 2606 2752 275359534 275359674 5.390000e-24 122.0
58 TraesCS2B01G610100 chr1B 82.313 147 20 6 2606 2752 275459524 275459664 5.390000e-24 122.0
59 TraesCS2B01G610100 chr1B 82.313 147 20 6 2606 2752 275554478 275554618 5.390000e-24 122.0
60 TraesCS2B01G610100 chr1B 82.313 147 20 6 2606 2752 275673100 275673240 5.390000e-24 122.0
61 TraesCS2B01G610100 chr3D 94.286 175 10 0 1 175 560058645 560058819 6.550000e-68 268.0
62 TraesCS2B01G610100 chrUn 94.737 171 9 0 5 175 229259135 229259305 2.350000e-67 267.0
63 TraesCS2B01G610100 chrUn 75.887 141 26 5 2483 2622 31693693 31693826 9.220000e-07 65.8
64 TraesCS2B01G610100 chr6D 94.737 171 9 0 5 175 132052918 132052748 2.350000e-67 267.0
65 TraesCS2B01G610100 chr6D 91.124 169 15 0 3804 3972 65394273 65394105 3.090000e-56 230.0
66 TraesCS2B01G610100 chr4D 94.737 171 9 0 5 175 55291110 55290940 2.350000e-67 267.0
67 TraesCS2B01G610100 chr6B 91.228 171 15 0 3804 3974 140458122 140457952 2.390000e-57 233.0
68 TraesCS2B01G610100 chr6A 91.228 171 15 0 3804 3974 83356702 83356872 2.390000e-57 233.0
69 TraesCS2B01G610100 chr6A 91.667 132 9 2 508 638 116547321 116547191 8.770000e-42 182.0
70 TraesCS2B01G610100 chr3B 98.425 127 2 0 506 632 70866470 70866344 1.440000e-54 224.0
71 TraesCS2B01G610100 chr3B 93.750 144 7 2 506 647 513905468 513905611 8.650000e-52 215.0
72 TraesCS2B01G610100 chr3B 93.056 144 8 2 506 647 175216064 175215921 4.020000e-50 209.0
73 TraesCS2B01G610100 chr7B 93.056 144 8 2 506 647 182718803 182718946 4.020000e-50 209.0
74 TraesCS2B01G610100 chr7B 91.429 140 12 0 500 639 744645830 744645691 4.050000e-45 193.0
75 TraesCS2B01G610100 chr7B 90.845 142 12 1 496 636 552573892 552574033 5.240000e-44 189.0
76 TraesCS2B01G610100 chr5B 90.909 143 11 1 493 635 482500804 482500944 1.460000e-44 191.0
77 TraesCS2B01G610100 chr1A 91.912 136 10 1 498 633 187375219 187375085 5.240000e-44 189.0
78 TraesCS2B01G610100 chr1A 88.667 150 14 3 492 640 407648559 407648706 3.160000e-41 180.0
79 TraesCS2B01G610100 chr1A 81.633 147 21 6 2606 2752 246128149 246128009 2.510000e-22 117.0
80 TraesCS2B01G610100 chr4A 91.791 134 10 1 499 632 590877261 590877129 6.780000e-43 185.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G610100 chr2B 789789124 789793097 3973 False 7339.000000 7339 100.000000 1 3974 1 chr2B.!!$F4 3973
1 TraesCS2B01G610100 chr2B 790104099 790106148 2049 False 619.500000 900 80.269500 988 3000 2 chr2B.!!$F5 2012
2 TraesCS2B01G610100 chr2B 790226840 790229970 3130 True 506.650000 1343 89.549333 993 3960 6 chr2B.!!$R2 2967
3 TraesCS2B01G610100 chr2D 645814842 645817083 2241 True 1090.666667 2233 88.941000 1010 3227 3 chr2D.!!$R5 2217
4 TraesCS2B01G610100 chr2D 645611805 645612964 1159 True 948.000000 948 81.803000 1838 3000 1 chr2D.!!$R3 1162
5 TraesCS2B01G610100 chr2D 645788273 645795417 7144 False 889.400000 2073 92.760800 817 3974 5 chr2D.!!$F6 3157
6 TraesCS2B01G610100 chr2D 645559454 645560784 1330 True 721.000000 904 87.431000 1345 2618 2 chr2D.!!$R4 1273
7 TraesCS2B01G610100 chr2D 645722710 645726813 4103 False 564.316667 1587 88.334833 1010 3972 6 chr2D.!!$F4 2962
8 TraesCS2B01G610100 chr2D 645768085 645768600 515 False 391.000000 510 93.708000 176 817 2 chr2D.!!$F5 641
9 TraesCS2B01G610100 chr2A 771345709 771346829 1120 False 924.000000 924 82.058000 1897 3000 1 chr2A.!!$F1 1103
10 TraesCS2B01G610100 chr2A 771125435 771127387 1952 True 670.000000 994 85.429000 1051 3000 2 chr2A.!!$R2 1949
11 TraesCS2B01G610100 chr2A 771072806 771074942 2136 True 588.000000 937 83.347500 987 3000 2 chr2A.!!$R1 2013
12 TraesCS2B01G610100 chr2A 771496584 771502509 5925 True 581.571429 2034 91.142429 816 3974 7 chr2A.!!$R3 3158

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
524 525 0.032813 TACTCCCTCCGTCCGGAAAT 60.033 55.0 5.23 0.0 44.66 2.17 F
527 528 0.032813 TCCCTCCGTCCGGAAATACT 60.033 55.0 5.23 0.0 44.66 2.12 F
984 988 0.322008 GCCTTGAAGTGAGGGTGAGG 60.322 60.0 0.00 0.0 34.75 3.86 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2281 5216 0.379669 GGTTTCTGCAGGCATCATCG 59.620 55.0 15.13 0.0 0.00 3.84 R
2820 5779 4.621983 GCAGAAACTTTAGGAGGAGAGTCC 60.622 50.0 0.00 0.0 36.58 3.85 R
3261 9182 0.510359 GACTTGTTGCAGCTCTGTCG 59.490 55.0 1.17 0.0 0.00 4.35 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
35 36 9.378504 ACTTGATTAGATTGATACATCTCCTCT 57.621 33.333 0.00 0.00 0.00 3.69
36 37 9.859427 CTTGATTAGATTGATACATCTCCTCTC 57.141 37.037 0.00 0.00 0.00 3.20
37 38 9.599056 TTGATTAGATTGATACATCTCCTCTCT 57.401 33.333 0.00 0.00 0.00 3.10
38 39 9.599056 TGATTAGATTGATACATCTCCTCTCTT 57.401 33.333 0.00 0.00 0.00 2.85
50 51 8.893563 ACATCTCCTCTCTTTATATAGGAAGG 57.106 38.462 0.00 5.83 37.67 3.46
51 52 8.461033 ACATCTCCTCTCTTTATATAGGAAGGT 58.539 37.037 9.76 0.00 37.67 3.50
52 53 9.320295 CATCTCCTCTCTTTATATAGGAAGGTT 57.680 37.037 9.76 0.00 37.67 3.50
53 54 9.906274 ATCTCCTCTCTTTATATAGGAAGGTTT 57.094 33.333 9.76 0.00 37.67 3.27
64 65 9.725206 TTATATAGGAAGGTTTACTTGACTCCT 57.275 33.333 0.00 0.00 40.21 3.69
66 67 9.725206 ATATAGGAAGGTTTACTTGACTCCTAA 57.275 33.333 0.00 0.00 40.21 2.69
67 68 6.361768 AGGAAGGTTTACTTGACTCCTAAG 57.638 41.667 0.00 0.00 40.21 2.18
68 69 4.936411 GGAAGGTTTACTTGACTCCTAAGC 59.064 45.833 0.00 0.00 40.21 3.09
69 70 5.512576 GGAAGGTTTACTTGACTCCTAAGCA 60.513 44.000 0.00 0.00 40.21 3.91
70 71 5.562298 AGGTTTACTTGACTCCTAAGCAA 57.438 39.130 0.00 0.00 0.00 3.91
71 72 5.937111 AGGTTTACTTGACTCCTAAGCAAA 58.063 37.500 0.00 0.00 0.00 3.68
72 73 5.763698 AGGTTTACTTGACTCCTAAGCAAAC 59.236 40.000 0.00 0.00 39.20 2.93
73 74 5.529800 GGTTTACTTGACTCCTAAGCAAACA 59.470 40.000 12.78 0.00 40.58 2.83
74 75 6.038936 GGTTTACTTGACTCCTAAGCAAACAA 59.961 38.462 12.78 0.00 40.58 2.83
75 76 7.255486 GGTTTACTTGACTCCTAAGCAAACAAT 60.255 37.037 12.78 0.00 40.58 2.71
76 77 5.948992 ACTTGACTCCTAAGCAAACAATC 57.051 39.130 0.00 0.00 0.00 2.67
77 78 4.762251 ACTTGACTCCTAAGCAAACAATCC 59.238 41.667 0.00 0.00 0.00 3.01
78 79 4.640771 TGACTCCTAAGCAAACAATCCT 57.359 40.909 0.00 0.00 0.00 3.24
79 80 5.755409 TGACTCCTAAGCAAACAATCCTA 57.245 39.130 0.00 0.00 0.00 2.94
80 81 6.121776 TGACTCCTAAGCAAACAATCCTAA 57.878 37.500 0.00 0.00 0.00 2.69
81 82 6.721318 TGACTCCTAAGCAAACAATCCTAAT 58.279 36.000 0.00 0.00 0.00 1.73
82 83 7.857456 TGACTCCTAAGCAAACAATCCTAATA 58.143 34.615 0.00 0.00 0.00 0.98
83 84 8.325787 TGACTCCTAAGCAAACAATCCTAATAA 58.674 33.333 0.00 0.00 0.00 1.40
84 85 8.507524 ACTCCTAAGCAAACAATCCTAATAAC 57.492 34.615 0.00 0.00 0.00 1.89
85 86 7.280205 ACTCCTAAGCAAACAATCCTAATAACG 59.720 37.037 0.00 0.00 0.00 3.18
86 87 7.332557 TCCTAAGCAAACAATCCTAATAACGA 58.667 34.615 0.00 0.00 0.00 3.85
87 88 7.990886 TCCTAAGCAAACAATCCTAATAACGAT 59.009 33.333 0.00 0.00 0.00 3.73
88 89 9.268268 CCTAAGCAAACAATCCTAATAACGATA 57.732 33.333 0.00 0.00 0.00 2.92
91 92 8.958119 AGCAAACAATCCTAATAACGATAAGA 57.042 30.769 0.00 0.00 0.00 2.10
92 93 9.561069 AGCAAACAATCCTAATAACGATAAGAT 57.439 29.630 0.00 0.00 0.00 2.40
100 101 9.614792 ATCCTAATAACGATAAGATAATTGGGC 57.385 33.333 0.00 0.00 0.00 5.36
101 102 8.822805 TCCTAATAACGATAAGATAATTGGGCT 58.177 33.333 0.00 0.00 0.00 5.19
105 106 6.803154 AACGATAAGATAATTGGGCTAAGC 57.197 37.500 0.00 0.00 0.00 3.09
121 122 6.819397 GGCTAAGCCCCTAATAACAATAAG 57.181 41.667 0.00 0.00 44.06 1.73
122 123 6.540083 GGCTAAGCCCCTAATAACAATAAGA 58.460 40.000 0.00 0.00 44.06 2.10
123 124 7.175797 GGCTAAGCCCCTAATAACAATAAGAT 58.824 38.462 0.00 0.00 44.06 2.40
124 125 8.326529 GGCTAAGCCCCTAATAACAATAAGATA 58.673 37.037 0.00 0.00 44.06 1.98
125 126 9.734984 GCTAAGCCCCTAATAACAATAAGATAA 57.265 33.333 0.00 0.00 0.00 1.75
129 130 9.574516 AGCCCCTAATAACAATAAGATAACTTG 57.425 33.333 0.00 0.00 37.53 3.16
130 131 8.793592 GCCCCTAATAACAATAAGATAACTTGG 58.206 37.037 0.00 0.00 37.53 3.61
131 132 9.297037 CCCCTAATAACAATAAGATAACTTGGG 57.703 37.037 0.00 0.00 37.53 4.12
132 133 8.793592 CCCTAATAACAATAAGATAACTTGGGC 58.206 37.037 0.00 0.00 37.53 5.36
133 134 9.574516 CCTAATAACAATAAGATAACTTGGGCT 57.425 33.333 0.00 0.00 37.53 5.19
136 137 9.914834 AATAACAATAAGATAACTTGGGCTACA 57.085 29.630 0.00 0.00 37.53 2.74
137 138 9.914834 ATAACAATAAGATAACTTGGGCTACAA 57.085 29.630 0.00 0.00 37.53 2.41
138 139 7.625828 ACAATAAGATAACTTGGGCTACAAC 57.374 36.000 0.00 0.00 37.53 3.32
139 140 6.602009 ACAATAAGATAACTTGGGCTACAACC 59.398 38.462 0.00 0.00 37.53 3.77
164 165 2.130272 GGCTAAGCCCCTAATATGCC 57.870 55.000 0.00 0.00 44.06 4.40
165 166 1.636003 GGCTAAGCCCCTAATATGCCT 59.364 52.381 0.00 0.00 44.06 4.75
166 167 2.619074 GGCTAAGCCCCTAATATGCCTG 60.619 54.545 0.00 0.00 44.06 4.85
167 168 2.040412 GCTAAGCCCCTAATATGCCTGT 59.960 50.000 0.00 0.00 0.00 4.00
168 169 2.959465 AAGCCCCTAATATGCCTGTC 57.041 50.000 0.00 0.00 0.00 3.51
169 170 1.819753 AGCCCCTAATATGCCTGTCA 58.180 50.000 0.00 0.00 0.00 3.58
170 171 2.352371 AGCCCCTAATATGCCTGTCAT 58.648 47.619 0.00 0.00 39.17 3.06
171 172 3.531059 AGCCCCTAATATGCCTGTCATA 58.469 45.455 0.00 0.00 41.52 2.15
172 173 3.916349 AGCCCCTAATATGCCTGTCATAA 59.084 43.478 0.00 0.00 40.73 1.90
173 174 4.010349 GCCCCTAATATGCCTGTCATAAC 58.990 47.826 0.00 0.00 40.73 1.89
174 175 4.506625 GCCCCTAATATGCCTGTCATAACA 60.507 45.833 0.00 0.00 40.73 2.41
187 188 2.401766 ATAACAGCCGTGCAGCAGC 61.402 57.895 0.00 0.00 42.57 5.25
195 196 3.117171 GTGCAGCAGCGTGAGAGG 61.117 66.667 0.00 0.00 46.23 3.69
201 202 2.808315 CAGCGTGAGAGGGCGTAT 59.192 61.111 0.00 0.00 0.00 3.06
304 305 8.654997 GGTGCATTATCATATACTCCCTATGAT 58.345 37.037 9.89 9.89 44.52 2.45
332 333 8.388103 CAAGATAAGTATGGTGGTTTTAGTTCG 58.612 37.037 0.00 0.00 0.00 3.95
376 377 6.779860 ACACATGGAGTATTAGAAAGGTGTT 58.220 36.000 0.00 0.00 32.39 3.32
378 379 7.724061 ACACATGGAGTATTAGAAAGGTGTTTT 59.276 33.333 0.00 0.00 32.39 2.43
395 396 5.288472 GGTGTTTTAACAACTCTGCAAACTG 59.712 40.000 3.46 0.00 43.21 3.16
402 403 0.036875 ACTCTGCAAACTGGGCCTAC 59.963 55.000 4.53 0.00 0.00 3.18
424 425 3.901222 CCCCAACCTTACACTGGATTTTT 59.099 43.478 0.00 0.00 31.38 1.94
430 431 5.953571 ACCTTACACTGGATTTTTCTTCCT 58.046 37.500 0.00 0.00 34.17 3.36
439 440 3.424962 GGATTTTTCTTCCTTGCTCGTCG 60.425 47.826 0.00 0.00 0.00 5.12
508 509 2.099263 CGTGATGGTTCGACATCCTACT 59.901 50.000 12.10 0.00 45.16 2.57
509 510 3.707793 GTGATGGTTCGACATCCTACTC 58.292 50.000 12.10 3.71 45.16 2.59
510 511 2.693591 TGATGGTTCGACATCCTACTCC 59.306 50.000 12.10 0.00 45.16 3.85
511 512 1.481871 TGGTTCGACATCCTACTCCC 58.518 55.000 0.00 0.00 0.00 4.30
512 513 1.006758 TGGTTCGACATCCTACTCCCT 59.993 52.381 0.00 0.00 0.00 4.20
513 514 1.682323 GGTTCGACATCCTACTCCCTC 59.318 57.143 0.00 0.00 0.00 4.30
514 515 1.682323 GTTCGACATCCTACTCCCTCC 59.318 57.143 0.00 0.00 0.00 4.30
515 516 0.179026 TCGACATCCTACTCCCTCCG 60.179 60.000 0.00 0.00 0.00 4.63
516 517 0.465824 CGACATCCTACTCCCTCCGT 60.466 60.000 0.00 0.00 0.00 4.69
517 518 1.320507 GACATCCTACTCCCTCCGTC 58.679 60.000 0.00 0.00 0.00 4.79
518 519 0.106116 ACATCCTACTCCCTCCGTCC 60.106 60.000 0.00 0.00 0.00 4.79
519 520 1.150992 ATCCTACTCCCTCCGTCCG 59.849 63.158 0.00 0.00 0.00 4.79
520 521 2.354755 ATCCTACTCCCTCCGTCCGG 62.355 65.000 0.00 0.00 0.00 5.14
521 522 2.593978 CTACTCCCTCCGTCCGGA 59.406 66.667 0.00 0.00 42.90 5.14
522 523 1.077212 CTACTCCCTCCGTCCGGAA 60.077 63.158 5.23 0.00 44.66 4.30
523 524 0.682209 CTACTCCCTCCGTCCGGAAA 60.682 60.000 5.23 0.00 44.66 3.13
524 525 0.032813 TACTCCCTCCGTCCGGAAAT 60.033 55.000 5.23 0.00 44.66 2.17
525 526 0.032813 ACTCCCTCCGTCCGGAAATA 60.033 55.000 5.23 0.00 44.66 1.40
526 527 0.388294 CTCCCTCCGTCCGGAAATAC 59.612 60.000 5.23 0.00 44.66 1.89
527 528 0.032813 TCCCTCCGTCCGGAAATACT 60.033 55.000 5.23 0.00 44.66 2.12
528 529 0.828677 CCCTCCGTCCGGAAATACTT 59.171 55.000 5.23 0.00 44.66 2.24
529 530 1.472728 CCCTCCGTCCGGAAATACTTG 60.473 57.143 5.23 0.00 44.66 3.16
530 531 1.206371 CCTCCGTCCGGAAATACTTGT 59.794 52.381 5.23 0.00 44.66 3.16
531 532 2.537401 CTCCGTCCGGAAATACTTGTC 58.463 52.381 5.23 0.00 44.66 3.18
532 533 1.894466 TCCGTCCGGAAATACTTGTCA 59.106 47.619 5.23 0.00 42.05 3.58
533 534 2.498481 TCCGTCCGGAAATACTTGTCAT 59.502 45.455 5.23 0.00 42.05 3.06
534 535 2.864343 CCGTCCGGAAATACTTGTCATC 59.136 50.000 5.23 0.00 37.50 2.92
535 536 3.517602 CGTCCGGAAATACTTGTCATCA 58.482 45.455 5.23 0.00 0.00 3.07
536 537 3.930229 CGTCCGGAAATACTTGTCATCAA 59.070 43.478 5.23 0.00 0.00 2.57
537 538 4.390603 CGTCCGGAAATACTTGTCATCAAA 59.609 41.667 5.23 0.00 32.87 2.69
538 539 5.106869 CGTCCGGAAATACTTGTCATCAAAA 60.107 40.000 5.23 0.00 32.87 2.44
539 540 6.403200 CGTCCGGAAATACTTGTCATCAAAAT 60.403 38.462 5.23 0.00 32.87 1.82
540 541 6.747280 GTCCGGAAATACTTGTCATCAAAATG 59.253 38.462 5.23 0.00 32.87 2.32
541 542 6.657117 TCCGGAAATACTTGTCATCAAAATGA 59.343 34.615 0.00 0.00 39.63 2.57
542 543 7.175816 TCCGGAAATACTTGTCATCAAAATGAA 59.824 33.333 0.00 0.00 43.42 2.57
543 544 7.975616 CCGGAAATACTTGTCATCAAAATGAAT 59.024 33.333 0.00 0.00 43.42 2.57
551 552 8.096414 ACTTGTCATCAAAATGAATAAAAGGGG 58.904 33.333 0.00 0.00 43.42 4.79
552 553 7.789202 TGTCATCAAAATGAATAAAAGGGGA 57.211 32.000 0.00 0.00 43.42 4.81
553 554 8.378115 TGTCATCAAAATGAATAAAAGGGGAT 57.622 30.769 0.00 0.00 43.42 3.85
554 555 8.259411 TGTCATCAAAATGAATAAAAGGGGATG 58.741 33.333 0.00 0.00 43.42 3.51
555 556 8.260114 GTCATCAAAATGAATAAAAGGGGATGT 58.740 33.333 0.00 0.00 43.42 3.06
556 557 9.486123 TCATCAAAATGAATAAAAGGGGATGTA 57.514 29.630 0.00 0.00 38.97 2.29
565 566 9.077885 TGAATAAAAGGGGATGTATTTAGATGC 57.922 33.333 0.00 0.00 0.00 3.91
566 567 9.077885 GAATAAAAGGGGATGTATTTAGATGCA 57.922 33.333 0.00 0.00 32.29 3.96
567 568 9.605951 AATAAAAGGGGATGTATTTAGATGCAT 57.394 29.630 0.00 0.00 40.67 3.96
568 569 7.919385 AAAAGGGGATGTATTTAGATGCATT 57.081 32.000 0.00 0.00 38.49 3.56
569 570 7.919385 AAAGGGGATGTATTTAGATGCATTT 57.081 32.000 0.00 0.00 38.49 2.32
570 571 7.919385 AAGGGGATGTATTTAGATGCATTTT 57.081 32.000 0.00 0.00 38.49 1.82
571 572 9.432982 AAAGGGGATGTATTTAGATGCATTTTA 57.567 29.630 0.00 0.00 38.49 1.52
572 573 8.641498 AGGGGATGTATTTAGATGCATTTTAG 57.359 34.615 0.00 0.00 38.49 1.85
573 574 8.227507 AGGGGATGTATTTAGATGCATTTTAGT 58.772 33.333 0.00 0.00 38.49 2.24
574 575 8.860088 GGGGATGTATTTAGATGCATTTTAGTT 58.140 33.333 0.00 0.00 38.49 2.24
586 587 8.903820 AGATGCATTTTAGTTTTAGATACACCC 58.096 33.333 0.00 0.00 0.00 4.61
587 588 7.399245 TGCATTTTAGTTTTAGATACACCCC 57.601 36.000 0.00 0.00 0.00 4.95
588 589 7.179269 TGCATTTTAGTTTTAGATACACCCCT 58.821 34.615 0.00 0.00 0.00 4.79
589 590 7.672239 TGCATTTTAGTTTTAGATACACCCCTT 59.328 33.333 0.00 0.00 0.00 3.95
590 591 8.528643 GCATTTTAGTTTTAGATACACCCCTTT 58.471 33.333 0.00 0.00 0.00 3.11
594 595 8.999905 TTAGTTTTAGATACACCCCTTTTTGT 57.000 30.769 0.00 0.00 0.00 2.83
595 596 7.520451 AGTTTTAGATACACCCCTTTTTGTC 57.480 36.000 0.00 0.00 0.00 3.18
596 597 7.295340 AGTTTTAGATACACCCCTTTTTGTCT 58.705 34.615 0.00 0.00 0.00 3.41
597 598 8.442374 AGTTTTAGATACACCCCTTTTTGTCTA 58.558 33.333 0.00 0.00 0.00 2.59
598 599 9.239551 GTTTTAGATACACCCCTTTTTGTCTAT 57.760 33.333 0.00 0.00 0.00 1.98
599 600 9.816787 TTTTAGATACACCCCTTTTTGTCTATT 57.183 29.630 0.00 0.00 0.00 1.73
600 601 9.816787 TTTAGATACACCCCTTTTTGTCTATTT 57.183 29.630 0.00 0.00 0.00 1.40
601 602 9.816787 TTAGATACACCCCTTTTTGTCTATTTT 57.183 29.630 0.00 0.00 0.00 1.82
602 603 8.122472 AGATACACCCCTTTTTGTCTATTTTG 57.878 34.615 0.00 0.00 0.00 2.44
603 604 7.947890 AGATACACCCCTTTTTGTCTATTTTGA 59.052 33.333 0.00 0.00 0.00 2.69
604 605 6.994421 ACACCCCTTTTTGTCTATTTTGAT 57.006 33.333 0.00 0.00 0.00 2.57
605 606 6.758254 ACACCCCTTTTTGTCTATTTTGATG 58.242 36.000 0.00 0.00 0.00 3.07
606 607 6.553100 ACACCCCTTTTTGTCTATTTTGATGA 59.447 34.615 0.00 0.00 0.00 2.92
607 608 6.868339 CACCCCTTTTTGTCTATTTTGATGAC 59.132 38.462 0.00 0.00 0.00 3.06
608 609 6.553100 ACCCCTTTTTGTCTATTTTGATGACA 59.447 34.615 0.00 0.00 38.71 3.58
609 610 7.070571 ACCCCTTTTTGTCTATTTTGATGACAA 59.929 33.333 0.00 0.00 45.31 3.18
610 611 7.599998 CCCCTTTTTGTCTATTTTGATGACAAG 59.400 37.037 7.63 0.00 46.72 3.16
611 612 8.143835 CCCTTTTTGTCTATTTTGATGACAAGT 58.856 33.333 7.63 0.00 46.72 3.16
618 619 9.513906 TGTCTATTTTGATGACAAGTATTTCCA 57.486 29.630 0.00 0.00 37.71 3.53
619 620 9.994432 GTCTATTTTGATGACAAGTATTTCCAG 57.006 33.333 0.00 0.00 37.32 3.86
620 621 9.958180 TCTATTTTGATGACAAGTATTTCCAGA 57.042 29.630 0.00 0.00 37.32 3.86
621 622 9.994432 CTATTTTGATGACAAGTATTTCCAGAC 57.006 33.333 0.00 0.00 37.32 3.51
622 623 6.480524 TTTGATGACAAGTATTTCCAGACG 57.519 37.500 0.00 0.00 37.32 4.18
623 624 4.503910 TGATGACAAGTATTTCCAGACGG 58.496 43.478 0.00 0.00 0.00 4.79
624 625 4.221924 TGATGACAAGTATTTCCAGACGGA 59.778 41.667 0.00 0.00 40.60 4.69
625 626 4.188247 TGACAAGTATTTCCAGACGGAG 57.812 45.455 0.00 0.00 44.10 4.63
626 627 3.056107 TGACAAGTATTTCCAGACGGAGG 60.056 47.826 0.00 0.00 44.10 4.30
627 628 2.236395 ACAAGTATTTCCAGACGGAGGG 59.764 50.000 0.00 0.00 44.10 4.30
628 629 2.500098 CAAGTATTTCCAGACGGAGGGA 59.500 50.000 0.00 0.00 44.10 4.20
629 630 2.389715 AGTATTTCCAGACGGAGGGAG 58.610 52.381 0.00 0.00 44.10 4.30
630 631 2.108970 GTATTTCCAGACGGAGGGAGT 58.891 52.381 0.00 0.00 44.10 3.85
631 632 2.544844 ATTTCCAGACGGAGGGAGTA 57.455 50.000 0.00 0.00 44.10 2.59
632 633 1.553706 TTTCCAGACGGAGGGAGTAC 58.446 55.000 0.00 0.00 44.10 2.73
674 675 9.816787 TCTATTTGTTTTGGGGTAGAAAATAGT 57.183 29.630 10.41 0.00 37.38 2.12
675 676 9.855021 CTATTTGTTTTGGGGTAGAAAATAGTG 57.145 33.333 0.00 0.00 34.06 2.74
676 677 7.899648 TTTGTTTTGGGGTAGAAAATAGTGA 57.100 32.000 0.00 0.00 0.00 3.41
677 678 8.485578 TTTGTTTTGGGGTAGAAAATAGTGAT 57.514 30.769 0.00 0.00 0.00 3.06
678 679 7.461182 TGTTTTGGGGTAGAAAATAGTGATG 57.539 36.000 0.00 0.00 0.00 3.07
679 680 7.235079 TGTTTTGGGGTAGAAAATAGTGATGA 58.765 34.615 0.00 0.00 0.00 2.92
722 724 6.648879 TTCTTTCCATTTGTTTGAGGGTAG 57.351 37.500 0.00 0.00 0.00 3.18
734 736 5.820947 TGTTTGAGGGTAGAAAAGTGAAGTC 59.179 40.000 0.00 0.00 0.00 3.01
737 739 5.855045 TGAGGGTAGAAAAGTGAAGTCTTC 58.145 41.667 5.58 5.58 0.00 2.87
955 959 1.377202 CCACGCCCAGCTAATGTGT 60.377 57.895 0.00 0.00 0.00 3.72
979 983 1.001641 CTGGGCCTTGAAGTGAGGG 60.002 63.158 4.53 0.00 34.75 4.30
982 986 1.761174 GGCCTTGAAGTGAGGGTGA 59.239 57.895 0.00 0.00 34.75 4.02
984 988 0.322008 GCCTTGAAGTGAGGGTGAGG 60.322 60.000 0.00 0.00 34.75 3.86
1039 1108 4.598062 CGAGTATAGCAATCTCAACGACA 58.402 43.478 0.00 0.00 0.00 4.35
1052 1121 2.687200 CGACACCATCCCTCCCCA 60.687 66.667 0.00 0.00 0.00 4.96
1104 1194 2.675772 GACGTCGTGGAGGGGAGT 60.676 66.667 0.63 0.00 0.00 3.85
1106 1196 2.675423 CGTCGTGGAGGGGAGTCA 60.675 66.667 0.00 0.00 0.00 3.41
1199 1289 4.415150 CATGGCTGCCAGGGACGT 62.415 66.667 27.20 5.90 36.75 4.34
1224 1317 2.666526 GGCGAGCGGATGGATTCC 60.667 66.667 0.00 0.00 41.59 3.01
1336 1456 3.057946 GCTTCACAAGGACAAGATGAACC 60.058 47.826 0.00 0.00 0.00 3.62
1337 1457 3.140325 TCACAAGGACAAGATGAACCC 57.860 47.619 0.00 0.00 0.00 4.11
1341 1461 3.244700 ACAAGGACAAGATGAACCCAGAG 60.245 47.826 0.00 0.00 0.00 3.35
1342 1462 1.912043 AGGACAAGATGAACCCAGAGG 59.088 52.381 0.00 0.00 40.04 3.69
1438 1593 1.957177 GTACGCAGATGGAGGAGATGA 59.043 52.381 0.00 0.00 0.00 2.92
1447 1602 3.185246 TGGAGGAGATGATCGCTTTTC 57.815 47.619 0.00 0.00 0.00 2.29
1602 1763 3.418913 CGGCGCGACATGTCCAAA 61.419 61.111 20.03 0.00 0.00 3.28
1608 1769 1.136252 CGCGACATGTCCAAACTCAAG 60.136 52.381 20.03 3.89 0.00 3.02
1738 1899 0.955919 GGACAACAAGGAGAAGGCCG 60.956 60.000 0.00 0.00 0.00 6.13
1753 1914 2.203126 CCGGCAAGGAGATGGAGC 60.203 66.667 0.00 0.00 45.00 4.70
1833 1994 5.553290 TCAGATTCACGAGTAAGACTCTG 57.447 43.478 5.17 0.00 42.92 3.35
1836 1997 5.570973 CAGATTCACGAGTAAGACTCTGTTG 59.429 44.000 5.17 0.58 42.92 3.33
1920 4839 6.740411 AATTTTTGTTGACAACATTGTGCT 57.260 29.167 21.19 3.15 42.43 4.40
2033 4952 3.641437 TCTCCTTCAAAATTGCCAACG 57.359 42.857 0.00 0.00 0.00 4.10
2242 5172 5.090652 TGTTTCATGCGTCTTACTTTGTC 57.909 39.130 0.00 0.00 0.00 3.18
2281 5216 8.920665 TGTTGCAATTAATTAAGCATGTGTAAC 58.079 29.630 12.45 13.63 36.80 2.50
2431 5369 1.208052 TCACTAAGAGATGCCAGCACC 59.792 52.381 0.00 0.00 0.00 5.01
2680 5639 6.425417 TGTGTTGCTTGATTCTCGTTATTGTA 59.575 34.615 0.00 0.00 0.00 2.41
2688 5647 5.295787 TGATTCTCGTTATTGTAATGGTGGC 59.704 40.000 0.00 0.00 0.00 5.01
2820 5779 6.535150 TGAATGTTTTCATAGAAGCCTACTCG 59.465 38.462 0.00 0.00 39.94 4.18
2951 5934 4.365514 TTGCTTGGTCACCTATTCTTCA 57.634 40.909 0.00 0.00 0.00 3.02
3047 6039 2.569853 CCACCGCCCTGTTATATCCATA 59.430 50.000 0.00 0.00 0.00 2.74
3085 6077 4.275936 GCCAGTAGTTGTTTGTCTGTTCAT 59.724 41.667 0.00 0.00 0.00 2.57
3160 6152 1.078709 AGATTTCGACCATGTGCGTG 58.921 50.000 4.67 0.00 0.00 5.34
3183 6551 7.061905 CGTGTCGACTCTGTTTTATAAGTCATT 59.938 37.037 17.92 0.00 38.41 2.57
3227 6595 7.262772 TCTATTACTGCTATAACGTGCAAGTT 58.737 34.615 21.49 21.49 38.81 2.66
3232 6600 3.997681 TGCTATAACGTGCAAGTTAAGCA 59.002 39.130 32.05 32.05 41.90 3.91
3257 9178 7.726033 ATTAGGAATCCGTATATGAGCTCTT 57.274 36.000 16.19 11.54 0.00 2.85
3261 9182 6.931840 AGGAATCCGTATATGAGCTCTTTTTC 59.068 38.462 16.19 1.21 0.00 2.29
3264 9185 5.279384 TCCGTATATGAGCTCTTTTTCGAC 58.721 41.667 16.19 3.28 0.00 4.20
3273 9194 2.138320 CTCTTTTTCGACAGAGCTGCA 58.862 47.619 1.02 0.00 30.45 4.41
3292 9527 5.021033 TGCAACAAGTCAAACCATCAATT 57.979 34.783 0.00 0.00 0.00 2.32
3354 9589 5.104982 TGTGATGTTTTCTTGCTTTTCCCTT 60.105 36.000 0.00 0.00 0.00 3.95
3562 10118 0.165944 CGCAACAAAGGTTAGAGCCG 59.834 55.000 0.00 0.00 34.87 5.52
3610 10202 1.153086 GATGGTGTGCTAGGGCCAG 60.153 63.158 6.18 2.03 37.74 4.85
3674 10277 9.747898 AGGTAAGGACAATACATTTAATGTCAA 57.252 29.630 14.29 0.00 43.67 3.18
3735 10338 4.772624 CCCAACCCTCTATCGATCTGATAA 59.227 45.833 0.00 0.00 39.06 1.75
3746 10349 9.785982 TCTATCGATCTGATAAGGTATCCTATG 57.214 37.037 0.00 0.00 39.06 2.23
3748 10351 6.187682 TCGATCTGATAAGGTATCCTATGCA 58.812 40.000 0.00 0.00 34.26 3.96
3749 10352 6.319911 TCGATCTGATAAGGTATCCTATGCAG 59.680 42.308 0.00 0.00 34.26 4.41
3750 10353 6.319911 CGATCTGATAAGGTATCCTATGCAGA 59.680 42.308 12.89 12.89 34.26 4.26
3751 10354 7.468494 CGATCTGATAAGGTATCCTATGCAGAG 60.468 44.444 0.00 0.00 34.26 3.35
3752 10355 5.420421 TCTGATAAGGTATCCTATGCAGAGC 59.580 44.000 1.83 0.00 34.26 4.09
3754 10357 5.186603 TGATAAGGTATCCTATGCAGAGCTG 59.813 44.000 1.83 0.00 34.26 4.24
3756 10359 3.581101 AGGTATCCTATGCAGAGCTGAA 58.419 45.455 1.83 0.00 28.47 3.02
3757 10360 4.166539 AGGTATCCTATGCAGAGCTGAAT 58.833 43.478 1.83 0.00 32.54 2.57
3760 10363 3.747854 TCCTATGCAGAGCTGAATGAG 57.252 47.619 1.83 0.00 29.97 2.90
3764 10367 2.381725 TGCAGAGCTGAATGAGACTG 57.618 50.000 0.85 0.00 33.51 3.51
3794 10422 1.668419 AGCTGTTGCGGGATTGTATC 58.332 50.000 0.00 0.00 45.42 2.24
3800 10542 5.643777 GCTGTTGCGGGATTGTATCTATTAT 59.356 40.000 0.00 0.00 0.00 1.28
3961 10704 8.699283 AGAAGAATAGCAAAAATCTGCAATTC 57.301 30.769 0.00 0.00 45.18 2.17
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
9 10 9.378504 AGAGGAGATGTATCAATCTAATCAAGT 57.621 33.333 0.00 0.00 37.03 3.16
10 11 9.859427 GAGAGGAGATGTATCAATCTAATCAAG 57.141 37.037 0.00 0.00 37.03 3.02
11 12 9.599056 AGAGAGGAGATGTATCAATCTAATCAA 57.401 33.333 0.00 0.00 37.03 2.57
12 13 9.599056 AAGAGAGGAGATGTATCAATCTAATCA 57.401 33.333 0.00 0.00 37.03 2.57
24 25 9.983024 CCTTCCTATATAAAGAGAGGAGATGTA 57.017 37.037 0.00 0.00 39.25 2.29
25 26 8.461033 ACCTTCCTATATAAAGAGAGGAGATGT 58.539 37.037 12.58 0.00 39.25 3.06
26 27 8.893563 ACCTTCCTATATAAAGAGAGGAGATG 57.106 38.462 12.58 0.00 39.25 2.90
27 28 9.906274 AAACCTTCCTATATAAAGAGAGGAGAT 57.094 33.333 12.58 0.00 39.25 2.75
38 39 9.725206 AGGAGTCAAGTAAACCTTCCTATATAA 57.275 33.333 0.00 0.00 0.00 0.98
40 41 9.725206 TTAGGAGTCAAGTAAACCTTCCTATAT 57.275 33.333 0.00 0.00 30.26 0.86
41 42 9.198475 CTTAGGAGTCAAGTAAACCTTCCTATA 57.802 37.037 0.00 0.00 30.26 1.31
42 43 7.364851 GCTTAGGAGTCAAGTAAACCTTCCTAT 60.365 40.741 0.00 0.00 30.26 2.57
43 44 6.070938 GCTTAGGAGTCAAGTAAACCTTCCTA 60.071 42.308 0.00 0.00 29.19 2.94
44 45 5.280062 GCTTAGGAGTCAAGTAAACCTTCCT 60.280 44.000 0.00 0.00 30.84 3.36
45 46 4.936411 GCTTAGGAGTCAAGTAAACCTTCC 59.064 45.833 0.00 0.00 32.90 3.46
46 47 5.548406 TGCTTAGGAGTCAAGTAAACCTTC 58.452 41.667 0.00 0.00 32.90 3.46
47 48 5.562298 TGCTTAGGAGTCAAGTAAACCTT 57.438 39.130 0.00 0.00 32.90 3.50
48 49 5.562298 TTGCTTAGGAGTCAAGTAAACCT 57.438 39.130 0.00 0.00 35.11 3.50
49 50 5.998553 GTTTGCTTAGGAGTCAAGTAAACC 58.001 41.667 18.31 7.53 45.26 3.27
51 52 7.040686 GGATTGTTTGCTTAGGAGTCAAGTAAA 60.041 37.037 3.38 3.38 35.92 2.01
52 53 6.430000 GGATTGTTTGCTTAGGAGTCAAGTAA 59.570 38.462 0.00 0.00 0.00 2.24
53 54 5.938125 GGATTGTTTGCTTAGGAGTCAAGTA 59.062 40.000 0.00 0.00 0.00 2.24
54 55 4.762251 GGATTGTTTGCTTAGGAGTCAAGT 59.238 41.667 0.00 0.00 0.00 3.16
55 56 5.006386 AGGATTGTTTGCTTAGGAGTCAAG 58.994 41.667 0.00 0.00 0.00 3.02
56 57 4.985538 AGGATTGTTTGCTTAGGAGTCAA 58.014 39.130 0.00 0.00 0.00 3.18
57 58 4.640771 AGGATTGTTTGCTTAGGAGTCA 57.359 40.909 0.00 0.00 0.00 3.41
58 59 8.613482 GTTATTAGGATTGTTTGCTTAGGAGTC 58.387 37.037 0.00 0.00 0.00 3.36
59 60 7.280205 CGTTATTAGGATTGTTTGCTTAGGAGT 59.720 37.037 0.00 0.00 0.00 3.85
60 61 7.494625 TCGTTATTAGGATTGTTTGCTTAGGAG 59.505 37.037 0.00 0.00 0.00 3.69
61 62 7.332557 TCGTTATTAGGATTGTTTGCTTAGGA 58.667 34.615 0.00 0.00 0.00 2.94
62 63 7.548196 TCGTTATTAGGATTGTTTGCTTAGG 57.452 36.000 0.00 0.00 0.00 2.69
65 66 9.391006 TCTTATCGTTATTAGGATTGTTTGCTT 57.609 29.630 0.00 0.00 31.69 3.91
66 67 8.958119 TCTTATCGTTATTAGGATTGTTTGCT 57.042 30.769 0.00 0.00 31.69 3.91
74 75 9.614792 GCCCAATTATCTTATCGTTATTAGGAT 57.385 33.333 0.00 0.00 33.68 3.24
75 76 8.822805 AGCCCAATTATCTTATCGTTATTAGGA 58.177 33.333 0.00 0.00 0.00 2.94
79 80 8.947115 GCTTAGCCCAATTATCTTATCGTTATT 58.053 33.333 0.00 0.00 0.00 1.40
80 81 7.553044 GGCTTAGCCCAATTATCTTATCGTTAT 59.447 37.037 13.12 0.00 44.06 1.89
81 82 6.877322 GGCTTAGCCCAATTATCTTATCGTTA 59.123 38.462 13.12 0.00 44.06 3.18
82 83 5.705905 GGCTTAGCCCAATTATCTTATCGTT 59.294 40.000 13.12 0.00 44.06 3.85
83 84 5.246307 GGCTTAGCCCAATTATCTTATCGT 58.754 41.667 13.12 0.00 44.06 3.73
84 85 5.803020 GGCTTAGCCCAATTATCTTATCG 57.197 43.478 13.12 0.00 44.06 2.92
99 100 9.734984 TTATCTTATTGTTATTAGGGGCTTAGC 57.265 33.333 0.00 0.00 0.00 3.09
103 104 9.574516 CAAGTTATCTTATTGTTATTAGGGGCT 57.425 33.333 0.00 0.00 32.07 5.19
104 105 8.793592 CCAAGTTATCTTATTGTTATTAGGGGC 58.206 37.037 0.00 0.00 32.07 5.80
105 106 9.297037 CCCAAGTTATCTTATTGTTATTAGGGG 57.703 37.037 0.00 0.00 32.07 4.79
106 107 8.793592 GCCCAAGTTATCTTATTGTTATTAGGG 58.206 37.037 0.00 0.00 32.07 3.53
107 108 9.574516 AGCCCAAGTTATCTTATTGTTATTAGG 57.425 33.333 0.00 0.00 32.07 2.69
110 111 9.914834 TGTAGCCCAAGTTATCTTATTGTTATT 57.085 29.630 0.00 0.00 32.07 1.40
111 112 9.914834 TTGTAGCCCAAGTTATCTTATTGTTAT 57.085 29.630 0.00 0.00 32.07 1.89
112 113 9.169592 GTTGTAGCCCAAGTTATCTTATTGTTA 57.830 33.333 0.00 0.00 32.51 2.41
113 114 7.122204 GGTTGTAGCCCAAGTTATCTTATTGTT 59.878 37.037 0.00 0.00 32.51 2.83
114 115 6.602009 GGTTGTAGCCCAAGTTATCTTATTGT 59.398 38.462 0.00 0.00 32.51 2.71
115 116 7.027778 GGTTGTAGCCCAAGTTATCTTATTG 57.972 40.000 0.00 0.00 32.51 1.90
129 130 3.938637 GCCCAGTGGGTTGTAGCCC 62.939 68.421 29.23 6.24 46.51 5.19
130 131 1.559065 TAGCCCAGTGGGTTGTAGCC 61.559 60.000 29.23 10.77 46.51 3.93
131 132 0.326927 TTAGCCCAGTGGGTTGTAGC 59.673 55.000 29.23 13.66 46.51 3.58
132 133 1.679032 GCTTAGCCCAGTGGGTTGTAG 60.679 57.143 29.23 23.11 46.51 2.74
133 134 0.326927 GCTTAGCCCAGTGGGTTGTA 59.673 55.000 29.23 15.43 46.51 2.41
134 135 1.074951 GCTTAGCCCAGTGGGTTGT 59.925 57.895 29.23 16.45 46.51 3.32
135 136 1.678970 GGCTTAGCCCAGTGGGTTG 60.679 63.158 29.23 13.72 46.51 3.77
136 137 2.763902 GGCTTAGCCCAGTGGGTT 59.236 61.111 29.23 25.88 46.51 4.11
146 147 2.040412 ACAGGCATATTAGGGGCTTAGC 59.960 50.000 0.00 0.00 37.90 3.09
147 148 3.327757 TGACAGGCATATTAGGGGCTTAG 59.672 47.826 0.00 0.00 37.90 2.18
148 149 3.322862 TGACAGGCATATTAGGGGCTTA 58.677 45.455 0.00 0.00 37.90 3.09
149 150 2.135189 TGACAGGCATATTAGGGGCTT 58.865 47.619 0.00 0.00 37.90 4.35
150 151 1.819753 TGACAGGCATATTAGGGGCT 58.180 50.000 0.00 0.00 41.01 5.19
151 152 2.887151 ATGACAGGCATATTAGGGGC 57.113 50.000 0.00 0.00 34.82 5.80
152 153 5.241403 TGTTATGACAGGCATATTAGGGG 57.759 43.478 0.00 0.00 39.15 4.79
165 166 1.298157 GCTGCACGGCTGTTATGACA 61.298 55.000 0.00 0.00 0.00 3.58
166 167 1.298157 TGCTGCACGGCTGTTATGAC 61.298 55.000 0.00 0.00 0.00 3.06
167 168 1.003959 TGCTGCACGGCTGTTATGA 60.004 52.632 0.00 0.00 0.00 2.15
168 169 1.426621 CTGCTGCACGGCTGTTATG 59.573 57.895 0.00 0.00 0.00 1.90
169 170 3.895025 CTGCTGCACGGCTGTTAT 58.105 55.556 0.00 0.00 0.00 1.89
187 188 2.225068 AAATGATACGCCCTCTCACG 57.775 50.000 0.00 0.00 0.00 4.35
189 190 5.163248 TGGAAATAAATGATACGCCCTCTCA 60.163 40.000 0.00 0.00 0.00 3.27
195 196 9.128107 CAACAATATGGAAATAAATGATACGCC 57.872 33.333 0.00 0.00 0.00 5.68
304 305 7.924541 ACTAAAACCACCATACTTATCTTGGA 58.075 34.615 0.00 0.00 34.52 3.53
312 313 7.754851 AATTCGAACTAAAACCACCATACTT 57.245 32.000 0.00 0.00 0.00 2.24
332 333 8.702438 CATGTGTCATGGTTTTAACTCAAATTC 58.298 33.333 0.00 0.00 0.00 2.17
376 377 3.181480 GCCCAGTTTGCAGAGTTGTTAAA 60.181 43.478 0.00 0.00 0.00 1.52
378 379 1.953686 GCCCAGTTTGCAGAGTTGTTA 59.046 47.619 0.00 0.00 0.00 2.41
402 403 2.899303 AATCCAGTGTAAGGTTGGGG 57.101 50.000 0.00 0.00 32.76 4.96
424 425 0.888619 ATGACGACGAGCAAGGAAGA 59.111 50.000 0.00 0.00 0.00 2.87
430 431 2.805671 ACAATTCAATGACGACGAGCAA 59.194 40.909 0.00 0.00 0.00 3.91
481 482 1.625616 GTCGAACCATCACGACGATT 58.374 50.000 0.00 0.00 46.39 3.34
501 502 1.150992 CGGACGGAGGGAGTAGGAT 59.849 63.158 0.00 0.00 0.00 3.24
508 509 0.032813 AGTATTTCCGGACGGAGGGA 60.033 55.000 13.64 4.95 46.06 4.20
509 510 0.828677 AAGTATTTCCGGACGGAGGG 59.171 55.000 13.64 0.00 46.06 4.30
510 511 1.206371 ACAAGTATTTCCGGACGGAGG 59.794 52.381 13.64 0.00 46.06 4.30
511 512 2.094390 TGACAAGTATTTCCGGACGGAG 60.094 50.000 13.64 3.15 46.06 4.63
512 513 1.894466 TGACAAGTATTTCCGGACGGA 59.106 47.619 1.83 9.76 43.52 4.69
513 514 2.373540 TGACAAGTATTTCCGGACGG 57.626 50.000 1.83 3.96 0.00 4.79
514 515 3.517602 TGATGACAAGTATTTCCGGACG 58.482 45.455 1.83 0.00 0.00 4.79
515 516 5.873179 TTTGATGACAAGTATTTCCGGAC 57.127 39.130 1.83 0.00 37.32 4.79
516 517 6.657117 TCATTTTGATGACAAGTATTTCCGGA 59.343 34.615 0.00 0.00 37.32 5.14
517 518 6.851609 TCATTTTGATGACAAGTATTTCCGG 58.148 36.000 0.00 0.00 37.32 5.14
518 519 8.915871 ATTCATTTTGATGACAAGTATTTCCG 57.084 30.769 0.00 0.00 37.32 4.30
525 526 8.096414 CCCCTTTTATTCATTTTGATGACAAGT 58.904 33.333 0.00 0.00 37.32 3.16
526 527 8.313292 TCCCCTTTTATTCATTTTGATGACAAG 58.687 33.333 0.00 0.00 37.32 3.16
527 528 8.200024 TCCCCTTTTATTCATTTTGATGACAA 57.800 30.769 0.00 0.00 0.00 3.18
528 529 7.789202 TCCCCTTTTATTCATTTTGATGACA 57.211 32.000 0.00 0.00 0.00 3.58
529 530 8.260114 ACATCCCCTTTTATTCATTTTGATGAC 58.740 33.333 0.00 0.00 32.39 3.06
530 531 8.378115 ACATCCCCTTTTATTCATTTTGATGA 57.622 30.769 0.00 0.00 32.39 2.92
539 540 9.077885 GCATCTAAATACATCCCCTTTTATTCA 57.922 33.333 0.00 0.00 0.00 2.57
540 541 9.077885 TGCATCTAAATACATCCCCTTTTATTC 57.922 33.333 0.00 0.00 0.00 1.75
541 542 9.605951 ATGCATCTAAATACATCCCCTTTTATT 57.394 29.630 0.00 0.00 0.00 1.40
542 543 9.605951 AATGCATCTAAATACATCCCCTTTTAT 57.394 29.630 0.00 0.00 0.00 1.40
543 544 9.432982 AAATGCATCTAAATACATCCCCTTTTA 57.567 29.630 0.00 0.00 0.00 1.52
544 545 7.919385 AATGCATCTAAATACATCCCCTTTT 57.081 32.000 0.00 0.00 0.00 2.27
545 546 7.919385 AAATGCATCTAAATACATCCCCTTT 57.081 32.000 0.00 0.00 0.00 3.11
546 547 7.919385 AAAATGCATCTAAATACATCCCCTT 57.081 32.000 0.00 0.00 0.00 3.95
547 548 8.227507 ACTAAAATGCATCTAAATACATCCCCT 58.772 33.333 0.00 0.00 0.00 4.79
548 549 8.409358 ACTAAAATGCATCTAAATACATCCCC 57.591 34.615 0.00 0.00 0.00 4.81
560 561 8.903820 GGGTGTATCTAAAACTAAAATGCATCT 58.096 33.333 0.00 0.00 0.00 2.90
561 562 8.135529 GGGGTGTATCTAAAACTAAAATGCATC 58.864 37.037 0.00 0.00 0.00 3.91
562 563 7.839200 AGGGGTGTATCTAAAACTAAAATGCAT 59.161 33.333 0.00 0.00 0.00 3.96
563 564 7.179269 AGGGGTGTATCTAAAACTAAAATGCA 58.821 34.615 0.00 0.00 0.00 3.96
564 565 7.640597 AGGGGTGTATCTAAAACTAAAATGC 57.359 36.000 0.00 0.00 0.00 3.56
568 569 9.423964 ACAAAAAGGGGTGTATCTAAAACTAAA 57.576 29.630 0.00 0.00 0.00 1.85
569 570 8.999905 ACAAAAAGGGGTGTATCTAAAACTAA 57.000 30.769 0.00 0.00 0.00 2.24
570 571 8.442374 AGACAAAAAGGGGTGTATCTAAAACTA 58.558 33.333 0.00 0.00 0.00 2.24
571 572 7.295340 AGACAAAAAGGGGTGTATCTAAAACT 58.705 34.615 0.00 0.00 0.00 2.66
572 573 7.520451 AGACAAAAAGGGGTGTATCTAAAAC 57.480 36.000 0.00 0.00 0.00 2.43
573 574 9.816787 AATAGACAAAAAGGGGTGTATCTAAAA 57.183 29.630 0.00 0.00 0.00 1.52
574 575 9.816787 AAATAGACAAAAAGGGGTGTATCTAAA 57.183 29.630 0.00 0.00 0.00 1.85
575 576 9.816787 AAAATAGACAAAAAGGGGTGTATCTAA 57.183 29.630 0.00 0.00 0.00 2.10
576 577 9.238368 CAAAATAGACAAAAAGGGGTGTATCTA 57.762 33.333 0.00 0.00 0.00 1.98
577 578 7.947890 TCAAAATAGACAAAAAGGGGTGTATCT 59.052 33.333 0.00 0.00 0.00 1.98
578 579 8.117813 TCAAAATAGACAAAAAGGGGTGTATC 57.882 34.615 0.00 0.00 0.00 2.24
579 580 8.531146 CATCAAAATAGACAAAAAGGGGTGTAT 58.469 33.333 0.00 0.00 0.00 2.29
580 581 7.726291 TCATCAAAATAGACAAAAAGGGGTGTA 59.274 33.333 0.00 0.00 0.00 2.90
581 582 6.553100 TCATCAAAATAGACAAAAAGGGGTGT 59.447 34.615 0.00 0.00 0.00 4.16
582 583 6.868339 GTCATCAAAATAGACAAAAAGGGGTG 59.132 38.462 0.00 0.00 32.68 4.61
583 584 6.553100 TGTCATCAAAATAGACAAAAAGGGGT 59.447 34.615 0.00 0.00 39.15 4.95
584 585 6.991938 TGTCATCAAAATAGACAAAAAGGGG 58.008 36.000 0.00 0.00 39.15 4.79
592 593 9.513906 TGGAAATACTTGTCATCAAAATAGACA 57.486 29.630 0.00 0.00 40.24 3.41
593 594 9.994432 CTGGAAATACTTGTCATCAAAATAGAC 57.006 33.333 0.00 0.00 32.87 2.59
594 595 9.958180 TCTGGAAATACTTGTCATCAAAATAGA 57.042 29.630 0.00 0.00 32.87 1.98
595 596 9.994432 GTCTGGAAATACTTGTCATCAAAATAG 57.006 33.333 0.00 0.00 32.87 1.73
596 597 8.664798 CGTCTGGAAATACTTGTCATCAAAATA 58.335 33.333 0.00 0.00 32.87 1.40
597 598 7.362056 CCGTCTGGAAATACTTGTCATCAAAAT 60.362 37.037 0.00 0.00 37.49 1.82
598 599 6.072728 CCGTCTGGAAATACTTGTCATCAAAA 60.073 38.462 0.00 0.00 37.49 2.44
599 600 5.411361 CCGTCTGGAAATACTTGTCATCAAA 59.589 40.000 0.00 0.00 37.49 2.69
600 601 4.935205 CCGTCTGGAAATACTTGTCATCAA 59.065 41.667 0.00 0.00 37.49 2.57
601 602 4.221924 TCCGTCTGGAAATACTTGTCATCA 59.778 41.667 0.00 0.00 42.85 3.07
602 603 4.755411 TCCGTCTGGAAATACTTGTCATC 58.245 43.478 0.00 0.00 42.85 2.92
603 604 4.383118 CCTCCGTCTGGAAATACTTGTCAT 60.383 45.833 0.00 0.00 45.87 3.06
604 605 3.056107 CCTCCGTCTGGAAATACTTGTCA 60.056 47.826 0.00 0.00 45.87 3.58
605 606 3.522553 CCTCCGTCTGGAAATACTTGTC 58.477 50.000 0.00 0.00 45.87 3.18
606 607 2.236395 CCCTCCGTCTGGAAATACTTGT 59.764 50.000 0.00 0.00 45.87 3.16
607 608 2.500098 TCCCTCCGTCTGGAAATACTTG 59.500 50.000 0.00 0.00 45.87 3.16
608 609 2.766828 CTCCCTCCGTCTGGAAATACTT 59.233 50.000 0.00 0.00 45.87 2.24
609 610 2.292323 ACTCCCTCCGTCTGGAAATACT 60.292 50.000 0.00 0.00 45.87 2.12
610 611 2.108970 ACTCCCTCCGTCTGGAAATAC 58.891 52.381 0.00 0.00 45.87 1.89
611 612 2.544844 ACTCCCTCCGTCTGGAAATA 57.455 50.000 0.00 0.00 45.87 1.40
612 613 2.108970 GTACTCCCTCCGTCTGGAAAT 58.891 52.381 0.00 0.00 45.87 2.17
613 614 1.203087 TGTACTCCCTCCGTCTGGAAA 60.203 52.381 0.00 0.00 45.87 3.13
614 615 0.406750 TGTACTCCCTCCGTCTGGAA 59.593 55.000 0.00 0.00 45.87 3.53
615 616 0.629596 ATGTACTCCCTCCGTCTGGA 59.370 55.000 0.00 0.00 43.88 3.86
616 617 0.747255 CATGTACTCCCTCCGTCTGG 59.253 60.000 0.00 0.00 0.00 3.86
617 618 1.475403 ACATGTACTCCCTCCGTCTG 58.525 55.000 0.00 0.00 0.00 3.51
618 619 2.233305 AACATGTACTCCCTCCGTCT 57.767 50.000 0.00 0.00 0.00 4.18
619 620 4.667519 ATAAACATGTACTCCCTCCGTC 57.332 45.455 0.00 0.00 0.00 4.79
620 621 5.431179 AAATAAACATGTACTCCCTCCGT 57.569 39.130 0.00 0.00 0.00 4.69
621 622 6.598064 AGAAAAATAAACATGTACTCCCTCCG 59.402 38.462 0.00 0.00 0.00 4.63
622 623 7.939784 AGAAAAATAAACATGTACTCCCTCC 57.060 36.000 0.00 0.00 0.00 4.30
623 624 9.841880 GAAAGAAAAATAAACATGTACTCCCTC 57.158 33.333 0.00 0.00 0.00 4.30
624 625 9.588096 AGAAAGAAAAATAAACATGTACTCCCT 57.412 29.630 0.00 0.00 0.00 4.20
659 660 7.177744 GGTTTTTCATCACTATTTTCTACCCCA 59.822 37.037 0.00 0.00 0.00 4.96
674 675 9.883142 AAAAAGAAACATGTAGGTTTTTCATCA 57.117 25.926 14.41 0.00 40.85 3.07
677 678 9.936759 AAGAAAAAGAAACATGTAGGTTTTTCA 57.063 25.926 30.19 0.00 42.39 2.69
690 692 9.277783 TCAAACAAATGGAAAGAAAAAGAAACA 57.722 25.926 0.00 0.00 0.00 2.83
923 927 3.071747 TGGGCGTGGCATGTTTATATCTA 59.928 43.478 8.75 0.00 0.00 1.98
925 929 2.226330 TGGGCGTGGCATGTTTATATC 58.774 47.619 8.75 0.00 0.00 1.63
955 959 3.551496 CTTCAAGGCCCAGGCACGA 62.551 63.158 11.50 0.27 44.11 4.35
979 983 1.934463 CAGTTCACGTGTGCCTCAC 59.066 57.895 16.51 4.30 43.03 3.51
982 986 2.715532 ATCGCAGTTCACGTGTGCCT 62.716 55.000 20.08 10.40 33.42 4.75
984 988 1.154599 CATCGCAGTTCACGTGTGC 60.155 57.895 16.51 16.86 0.00 4.57
991 1049 0.745486 CCATCAGCCATCGCAGTTCA 60.745 55.000 0.00 0.00 37.52 3.18
1039 1108 1.465188 TTGTGTGGGGAGGGATGGT 60.465 57.895 0.00 0.00 0.00 3.55
1052 1121 2.244651 GCCGTCGCAGTTCTTGTGT 61.245 57.895 0.00 0.00 38.46 3.72
1082 1151 2.273179 CCCTCCACGACGTCTTCCA 61.273 63.158 14.70 0.00 0.00 3.53
1104 1194 1.091537 GGATTTTGAACGGCGGATGA 58.908 50.000 13.24 0.00 0.00 2.92
1106 1196 1.988834 GCGGATTTTGAACGGCGGAT 61.989 55.000 13.24 0.00 0.00 4.18
1142 1232 1.652124 CGACAATTGAACTCGTACCCG 59.348 52.381 13.59 0.00 0.00 5.28
1143 1233 1.392510 GCGACAATTGAACTCGTACCC 59.607 52.381 13.59 0.00 0.00 3.69
1144 1234 2.092211 CAGCGACAATTGAACTCGTACC 59.908 50.000 13.59 0.00 0.00 3.34
1199 1289 2.490148 ATCCGCTCGCCGATCTTGA 61.490 57.895 0.00 0.00 40.02 3.02
1224 1317 1.889105 CGACTCAATGGCCCCATCG 60.889 63.158 0.00 0.00 35.31 3.84
1336 1456 4.505970 CCCCTCCCCCTCCTCTGG 62.506 77.778 0.00 0.00 0.00 3.86
1337 1457 4.505970 CCCCCTCCCCCTCCTCTG 62.506 77.778 0.00 0.00 0.00 3.35
1342 1462 4.500826 GACCTCCCCCTCCCCCTC 62.501 77.778 0.00 0.00 0.00 4.30
1370 1519 2.097036 TGATGGAGCTTGATTTGCCTG 58.903 47.619 0.00 0.00 0.00 4.85
1431 1586 5.747951 AATTCAGAAAAGCGATCATCTCC 57.252 39.130 0.00 0.00 0.00 3.71
1438 1593 6.115446 TGATCCTGTAATTCAGAAAAGCGAT 58.885 36.000 6.50 0.00 46.27 4.58
1447 1602 6.370994 GCTGATGGTATGATCCTGTAATTCAG 59.629 42.308 0.00 0.00 43.27 3.02
1602 1763 1.371558 GGCCAGTTCCGACTTGAGT 59.628 57.895 0.00 0.00 32.54 3.41
1608 1769 1.674651 GAAAGGGGCCAGTTCCGAC 60.675 63.158 4.39 0.00 0.00 4.79
1668 1829 1.852965 CTCTTCTCCCTCTCCTCCTCT 59.147 57.143 0.00 0.00 0.00 3.69
1738 1899 1.227497 CGAGCTCCATCTCCTTGCC 60.227 63.158 8.47 0.00 0.00 4.52
1753 1914 4.436653 GAAGTCGTCCACGTCGAG 57.563 61.111 0.00 0.00 40.80 4.04
1797 1958 6.420903 TCGTGAATCTGAAGTGTTCAACTAAG 59.579 38.462 0.00 0.00 38.56 2.18
1836 1997 2.000447 CGGTACTTGCTACAAGGAAGC 59.000 52.381 11.69 7.83 46.04 3.86
1920 4839 2.671070 GGCTCACTAGGGCTGCAA 59.329 61.111 11.01 0.00 0.00 4.08
2033 4952 1.133025 CCATTGCAGGTCCAAATCGAC 59.867 52.381 0.00 0.00 0.00 4.20
2242 5172 2.721274 TGCAACAAACCAATGGATCG 57.279 45.000 6.16 0.00 0.00 3.69
2281 5216 0.379669 GGTTTCTGCAGGCATCATCG 59.620 55.000 15.13 0.00 0.00 3.84
2820 5779 4.621983 GCAGAAACTTTAGGAGGAGAGTCC 60.622 50.000 0.00 0.00 36.58 3.85
3047 6039 7.448469 ACAACTACTGGCAAAACAGAGAAATAT 59.552 33.333 0.00 0.00 40.97 1.28
3085 6077 9.463443 CACATCTTACATAACTGATCGAATACA 57.537 33.333 0.00 0.00 0.00 2.29
3160 6152 9.141400 AGAAATGACTTATAAAACAGAGTCGAC 57.859 33.333 7.70 7.70 41.00 4.20
3227 6595 7.764443 GCTCATATACGGATTCCTAATTGCTTA 59.236 37.037 0.30 0.00 0.00 3.09
3232 6600 7.726033 AGAGCTCATATACGGATTCCTAATT 57.274 36.000 17.77 0.00 0.00 1.40
3257 9178 1.662517 TGTTGCAGCTCTGTCGAAAA 58.337 45.000 1.17 0.00 0.00 2.29
3261 9182 0.510359 GACTTGTTGCAGCTCTGTCG 59.490 55.000 1.17 0.00 0.00 4.35
3264 9185 2.542411 GGTTTGACTTGTTGCAGCTCTG 60.542 50.000 1.17 0.00 0.00 3.35
3270 9191 4.669206 ATTGATGGTTTGACTTGTTGCA 57.331 36.364 0.00 0.00 0.00 4.08
3273 9194 6.723298 TGGTAATTGATGGTTTGACTTGTT 57.277 33.333 0.00 0.00 0.00 2.83
3354 9589 7.886970 ACATTTCTGATTTCTGAAGAATCTGGA 59.113 33.333 8.28 0.00 35.68 3.86
3562 10118 3.522553 GCTCAGTACTATCCAACACCAC 58.477 50.000 0.00 0.00 0.00 4.16
3697 10300 3.511934 GGGTTGGGTAATGTGCAAATACA 59.488 43.478 0.00 0.00 34.63 2.29
3735 10338 3.251016 TCAGCTCTGCATAGGATACCT 57.749 47.619 0.83 0.00 37.71 3.08
3745 10348 1.066358 CCAGTCTCATTCAGCTCTGCA 60.066 52.381 0.00 0.00 0.00 4.41
3746 10349 1.654317 CCAGTCTCATTCAGCTCTGC 58.346 55.000 0.00 0.00 0.00 4.26
3748 10351 2.109774 CTCCCAGTCTCATTCAGCTCT 58.890 52.381 0.00 0.00 0.00 4.09
3749 10352 1.138661 CCTCCCAGTCTCATTCAGCTC 59.861 57.143 0.00 0.00 0.00 4.09
3750 10353 1.202330 CCTCCCAGTCTCATTCAGCT 58.798 55.000 0.00 0.00 0.00 4.24
3751 10354 0.463474 GCCTCCCAGTCTCATTCAGC 60.463 60.000 0.00 0.00 0.00 4.26
3752 10355 0.907486 TGCCTCCCAGTCTCATTCAG 59.093 55.000 0.00 0.00 0.00 3.02
3754 10357 0.463474 GCTGCCTCCCAGTCTCATTC 60.463 60.000 0.00 0.00 43.71 2.67
3756 10359 1.203441 TTGCTGCCTCCCAGTCTCAT 61.203 55.000 0.00 0.00 43.71 2.90
3757 10360 1.834856 CTTGCTGCCTCCCAGTCTCA 61.835 60.000 0.00 0.00 43.71 3.27
3760 10363 2.749441 GCTTGCTGCCTCCCAGTC 60.749 66.667 0.00 0.00 43.71 3.51
3764 10367 2.282745 AACAGCTTGCTGCCTCCC 60.283 61.111 20.92 0.00 44.23 4.30
3800 10542 7.652524 AAATGCTACTCTAGATGTCTTGAGA 57.347 36.000 22.30 5.64 44.76 3.27
3935 10678 8.699283 AATTGCAGATTTTTGCTATTCTTCTC 57.301 30.769 2.64 0.00 42.87 2.87


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.