Multiple sequence alignment - TraesCS2B01G609500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G609500 chr2B 100.000 2905 0 0 1 2905 789607438 789604534 0.000000e+00 5365.0
1 TraesCS2B01G609500 chr2B 100.000 34 0 0 457 490 789606946 789606913 2.420000e-06 63.9
2 TraesCS2B01G609500 chr2B 100.000 34 0 0 493 526 789606982 789606949 2.420000e-06 63.9
3 TraesCS2B01G609500 chr2D 89.819 2102 170 22 830 2898 645942331 645944421 0.000000e+00 2656.0
4 TraesCS2B01G609500 chr2D 90.160 437 31 5 1 425 645941590 645942026 2.530000e-155 558.0
5 TraesCS2B01G609500 chr2D 96.000 250 9 1 564 813 35036790 35037038 3.490000e-109 405.0
6 TraesCS2B01G609500 chr2D 86.636 217 27 2 209 423 645944726 645944942 3.740000e-59 239.0
7 TraesCS2B01G609500 chr2D 86.957 115 13 2 1 114 645944262 645944375 8.450000e-26 128.0
8 TraesCS2B01G609500 chr2A 87.845 1522 112 31 1407 2900 771708634 771710110 0.000000e+00 1718.0
9 TraesCS2B01G609500 chr2A 92.683 410 29 1 997 1405 771708156 771708565 8.970000e-165 590.0
10 TraesCS2B01G609500 chr2A 90.789 380 26 3 18 388 771700519 771700898 1.550000e-137 499.0
11 TraesCS2B01G609500 chr2A 77.895 190 29 7 2662 2842 771709280 771709465 3.960000e-19 106.0
12 TraesCS2B01G609500 chr2A 90.141 71 2 5 2834 2900 510195263 510195194 1.430000e-13 87.9
13 TraesCS2B01G609500 chr2A 94.643 56 2 1 2846 2900 456290948 456291003 5.160000e-13 86.1
14 TraesCS2B01G609500 chr2A 93.878 49 3 0 487 535 771701075 771701123 1.120000e-09 75.0
15 TraesCS2B01G609500 chr1D 96.414 251 9 0 563 813 396411646 396411396 5.790000e-112 414.0
16 TraesCS2B01G609500 chr1D 96.400 250 9 0 564 813 410536120 410536369 2.080000e-111 412.0
17 TraesCS2B01G609500 chr1D 95.703 256 10 1 558 813 295284627 295284373 7.490000e-111 411.0
18 TraesCS2B01G609500 chr1D 96.000 250 10 0 564 813 493955713 493955962 9.690000e-110 407.0
19 TraesCS2B01G609500 chr6D 96.000 250 10 0 564 813 158564469 158564220 9.690000e-110 407.0
20 TraesCS2B01G609500 chr5D 96.000 250 10 0 564 813 301292097 301291848 9.690000e-110 407.0
21 TraesCS2B01G609500 chr3D 96.000 250 10 0 564 813 609776517 609776268 9.690000e-110 407.0
22 TraesCS2B01G609500 chr1A 96.000 250 10 0 564 813 14434420 14434669 9.690000e-110 407.0
23 TraesCS2B01G609500 chr7A 96.226 53 1 1 2849 2900 174581372 174581320 5.160000e-13 86.1
24 TraesCS2B01G609500 chr4A 93.220 59 2 2 2843 2900 27163373 27163430 5.160000e-13 86.1
25 TraesCS2B01G609500 chr4B 93.103 58 2 2 2845 2900 498512074 498512017 1.860000e-12 84.2
26 TraesCS2B01G609500 chr1B 93.103 58 2 2 2845 2900 226852761 226852818 1.860000e-12 84.2
27 TraesCS2B01G609500 chr6A 91.525 59 3 2 2844 2900 601004613 601004555 2.400000e-11 80.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G609500 chr2B 789604534 789607438 2904 True 1830.933333 5365 100.0000 1 2905 3 chr2B.!!$R1 2904
1 TraesCS2B01G609500 chr2D 645941590 645944942 3352 False 895.250000 2656 88.3930 1 2898 4 chr2D.!!$F2 2897
2 TraesCS2B01G609500 chr2A 771708156 771710110 1954 False 804.666667 1718 86.1410 997 2900 3 chr2A.!!$F3 1903
3 TraesCS2B01G609500 chr2A 771700519 771701123 604 False 287.000000 499 92.3335 18 535 2 chr2A.!!$F2 517

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
388 400 0.028902 GGAACAAGCACACAACGGTC 59.971 55.0 0.0 0.0 0.0 4.79 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2143 2407 0.257039 GTCCCCTCATTGGCATGTCT 59.743 55.0 0.0 0.0 0.0 3.41 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
84 85 7.052878 GGGACCTCCTGTACCTTTATGGTTT 62.053 48.000 0.00 0.00 45.61 3.27
106 107 0.596600 CGACCCCGACATATTGGACG 60.597 60.000 0.00 0.00 38.22 4.79
112 113 3.744426 CCCCGACATATTGGACGTATTTC 59.256 47.826 0.00 0.00 0.00 2.17
148 157 1.410882 GAAGGTTCCCCTCATCTCTCG 59.589 57.143 0.00 0.00 41.56 4.04
169 178 7.012943 TCTCGCATATGTTAACTTTTTGTTCG 58.987 34.615 7.22 1.29 39.89 3.95
188 199 6.518493 TGTTCGTTTAGACTAACTGAATGGT 58.482 36.000 10.10 0.00 33.81 3.55
190 201 7.042321 TGTTCGTTTAGACTAACTGAATGGTTG 60.042 37.037 10.10 0.00 33.81 3.77
206 217 3.876341 TGGTTGTCTTTTAGGTCACGTT 58.124 40.909 0.00 0.00 0.00 3.99
219 230 2.457970 GTCACGTTATAGAGGCGAACC 58.542 52.381 0.00 0.00 0.00 3.62
236 247 2.671070 CTTCCACCTGTCGGGCAT 59.329 61.111 0.00 0.00 39.10 4.40
246 257 2.473816 CTGTCGGGCATACACATACAG 58.526 52.381 0.00 0.00 0.00 2.74
255 266 4.142902 GGCATACACATACAGACACAACAC 60.143 45.833 0.00 0.00 0.00 3.32
290 301 8.494016 AATTAAGTGTCTAATTAGTGTCAGCC 57.506 34.615 12.19 1.61 31.21 4.85
310 321 3.093717 CATGATGCAATGGAAAGGAGC 57.906 47.619 0.00 0.00 0.00 4.70
353 364 1.682323 TGTGCTGCTTTCTTGCATGAA 59.318 42.857 10.76 10.76 42.48 2.57
360 371 2.975851 GCTTTCTTGCATGAACAACTCG 59.024 45.455 14.11 1.86 0.00 4.18
381 393 1.537202 CAAGCTAGGGAACAAGCACAC 59.463 52.381 0.00 0.00 40.66 3.82
384 396 1.266989 GCTAGGGAACAAGCACACAAC 59.733 52.381 0.00 0.00 38.51 3.32
388 400 0.028902 GGAACAAGCACACAACGGTC 59.971 55.000 0.00 0.00 0.00 4.79
390 402 0.678366 AACAAGCACACAACGGTCCA 60.678 50.000 0.00 0.00 0.00 4.02
446 590 8.042515 ACTTTCTTCTACGAGTAGAGATAGTGT 58.957 37.037 20.36 12.81 42.50 3.55
447 591 9.531942 CTTTCTTCTACGAGTAGAGATAGTGTA 57.468 37.037 12.10 0.00 42.50 2.90
448 592 8.870160 TTCTTCTACGAGTAGAGATAGTGTAC 57.130 38.462 12.10 0.00 42.50 2.90
449 593 8.236585 TCTTCTACGAGTAGAGATAGTGTACT 57.763 38.462 12.10 0.00 42.50 2.73
451 595 8.645730 TTCTACGAGTAGAGATAGTGTACTTG 57.354 38.462 12.10 0.00 42.50 3.16
452 596 8.005192 TCTACGAGTAGAGATAGTGTACTTGA 57.995 38.462 8.74 0.00 38.28 3.02
453 597 8.473219 TCTACGAGTAGAGATAGTGTACTTGAA 58.527 37.037 8.74 0.00 38.28 2.69
455 599 7.104939 ACGAGTAGAGATAGTGTACTTGAAGT 58.895 38.462 2.37 2.37 38.28 3.01
456 600 7.278424 ACGAGTAGAGATAGTGTACTTGAAGTC 59.722 40.741 0.00 0.00 38.28 3.01
457 601 7.493320 CGAGTAGAGATAGTGTACTTGAAGTCT 59.507 40.741 0.00 0.00 38.28 3.24
459 603 8.952278 AGTAGAGATAGTGTACTTGAAGTCTTG 58.048 37.037 0.00 0.00 31.06 3.02
460 604 8.948145 GTAGAGATAGTGTACTTGAAGTCTTGA 58.052 37.037 0.00 0.00 0.00 3.02
461 605 8.410673 AGAGATAGTGTACTTGAAGTCTTGAA 57.589 34.615 0.00 0.00 0.00 2.69
463 607 7.379750 AGATAGTGTACTTGAAGTCTTGAACC 58.620 38.462 0.00 0.00 0.00 3.62
466 610 5.817816 AGTGTACTTGAAGTCTTGAACCAAG 59.182 40.000 0.00 9.21 42.25 3.61
467 611 5.815740 GTGTACTTGAAGTCTTGAACCAAGA 59.184 40.000 15.18 5.38 46.50 3.02
478 622 6.072112 TCTTGAACCAAGAAAATACACAGC 57.928 37.500 6.91 0.00 45.84 4.40
479 623 5.827797 TCTTGAACCAAGAAAATACACAGCT 59.172 36.000 6.91 0.00 45.84 4.24
480 624 5.689383 TGAACCAAGAAAATACACAGCTC 57.311 39.130 0.00 0.00 0.00 4.09
481 625 4.518970 TGAACCAAGAAAATACACAGCTCC 59.481 41.667 0.00 0.00 0.00 4.70
482 626 4.098914 ACCAAGAAAATACACAGCTCCA 57.901 40.909 0.00 0.00 0.00 3.86
483 627 4.666512 ACCAAGAAAATACACAGCTCCAT 58.333 39.130 0.00 0.00 0.00 3.41
484 628 4.460382 ACCAAGAAAATACACAGCTCCATG 59.540 41.667 0.00 0.00 0.00 3.66
485 629 4.701651 CCAAGAAAATACACAGCTCCATGA 59.298 41.667 0.00 0.00 0.00 3.07
517 686 4.518970 TGAACCAAGAAAATACACAGCTCC 59.481 41.667 0.00 0.00 0.00 4.70
530 699 1.561076 ACAGCTCCATGAAGTGCCATA 59.439 47.619 0.00 0.00 0.00 2.74
548 717 6.765989 GTGCCATATACTTCCAAGTTCATACA 59.234 38.462 0.00 0.00 40.37 2.29
551 720 8.148351 GCCATATACTTCCAAGTTCATACACTA 58.852 37.037 0.00 0.00 40.37 2.74
557 726 8.135382 ACTTCCAAGTTCATACACTATGTAGT 57.865 34.615 0.00 0.00 34.10 2.73
558 727 9.251440 ACTTCCAAGTTCATACACTATGTAGTA 57.749 33.333 0.00 0.00 34.10 1.82
559 728 9.517609 CTTCCAAGTTCATACACTATGTAGTAC 57.482 37.037 0.00 0.00 36.14 2.73
560 729 8.818622 TCCAAGTTCATACACTATGTAGTACT 57.181 34.615 0.00 0.00 36.14 2.73
566 735 9.460906 GTTCATACACTATGTAGTACTAAAGGC 57.539 37.037 3.61 0.00 36.14 4.35
567 736 8.991783 TCATACACTATGTAGTACTAAAGGCT 57.008 34.615 3.61 0.00 36.14 4.58
571 740 8.449251 ACACTATGTAGTACTAAAGGCTAGTC 57.551 38.462 3.61 0.00 34.13 2.59
572 741 8.051535 ACACTATGTAGTACTAAAGGCTAGTCA 58.948 37.037 3.61 0.00 34.13 3.41
573 742 9.069082 CACTATGTAGTACTAAAGGCTAGTCAT 57.931 37.037 3.61 3.44 34.13 3.06
577 746 8.447924 TGTAGTACTAAAGGCTAGTCATAGTG 57.552 38.462 18.05 0.00 0.00 2.74
578 747 6.963083 AGTACTAAAGGCTAGTCATAGTGG 57.037 41.667 18.05 0.00 0.00 4.00
579 748 5.834204 AGTACTAAAGGCTAGTCATAGTGGG 59.166 44.000 18.05 0.00 0.00 4.61
580 749 3.967987 ACTAAAGGCTAGTCATAGTGGGG 59.032 47.826 10.88 0.00 0.00 4.96
581 750 1.807814 AAGGCTAGTCATAGTGGGGG 58.192 55.000 0.00 0.00 0.00 5.40
582 751 0.642710 AGGCTAGTCATAGTGGGGGT 59.357 55.000 0.00 0.00 0.00 4.95
583 752 1.864251 AGGCTAGTCATAGTGGGGGTA 59.136 52.381 0.00 0.00 0.00 3.69
584 753 2.249214 AGGCTAGTCATAGTGGGGGTAA 59.751 50.000 0.00 0.00 0.00 2.85
585 754 3.116317 AGGCTAGTCATAGTGGGGGTAAT 60.116 47.826 0.00 0.00 0.00 1.89
586 755 3.651423 GGCTAGTCATAGTGGGGGTAATT 59.349 47.826 0.00 0.00 0.00 1.40
587 756 4.104261 GGCTAGTCATAGTGGGGGTAATTT 59.896 45.833 0.00 0.00 0.00 1.82
588 757 5.308759 GGCTAGTCATAGTGGGGGTAATTTA 59.691 44.000 0.00 0.00 0.00 1.40
589 758 6.465084 GCTAGTCATAGTGGGGGTAATTTAG 58.535 44.000 0.00 0.00 0.00 1.85
590 759 5.906772 AGTCATAGTGGGGGTAATTTAGG 57.093 43.478 0.00 0.00 0.00 2.69
591 760 5.294473 AGTCATAGTGGGGGTAATTTAGGT 58.706 41.667 0.00 0.00 0.00 3.08
592 761 6.455241 AGTCATAGTGGGGGTAATTTAGGTA 58.545 40.000 0.00 0.00 0.00 3.08
593 762 6.557633 AGTCATAGTGGGGGTAATTTAGGTAG 59.442 42.308 0.00 0.00 0.00 3.18
594 763 6.328410 GTCATAGTGGGGGTAATTTAGGTAGT 59.672 42.308 0.00 0.00 0.00 2.73
595 764 7.510343 GTCATAGTGGGGGTAATTTAGGTAGTA 59.490 40.741 0.00 0.00 0.00 1.82
596 765 8.073107 TCATAGTGGGGGTAATTTAGGTAGTAA 58.927 37.037 0.00 0.00 0.00 2.24
597 766 6.566079 AGTGGGGGTAATTTAGGTAGTAAC 57.434 41.667 0.00 0.00 0.00 2.50
598 767 6.274674 AGTGGGGGTAATTTAGGTAGTAACT 58.725 40.000 0.00 0.00 0.00 2.24
599 768 6.737131 AGTGGGGGTAATTTAGGTAGTAACTT 59.263 38.462 0.00 0.00 0.00 2.66
600 769 7.906192 AGTGGGGGTAATTTAGGTAGTAACTTA 59.094 37.037 0.00 0.00 0.00 2.24
601 770 8.548025 GTGGGGGTAATTTAGGTAGTAACTTAA 58.452 37.037 0.00 0.00 0.00 1.85
602 771 8.548025 TGGGGGTAATTTAGGTAGTAACTTAAC 58.452 37.037 0.00 0.00 27.84 2.01
603 772 8.548025 GGGGGTAATTTAGGTAGTAACTTAACA 58.452 37.037 0.00 0.00 29.13 2.41
604 773 9.383519 GGGGTAATTTAGGTAGTAACTTAACAC 57.616 37.037 0.00 0.00 29.13 3.32
605 774 9.942850 GGGTAATTTAGGTAGTAACTTAACACA 57.057 33.333 0.00 0.00 29.13 3.72
609 778 9.676861 AATTTAGGTAGTAACTTAACACATCCC 57.323 33.333 0.00 0.00 27.84 3.85
610 779 7.795534 TTAGGTAGTAACTTAACACATCCCA 57.204 36.000 0.00 0.00 0.00 4.37
611 780 6.691255 AGGTAGTAACTTAACACATCCCAA 57.309 37.500 0.00 0.00 0.00 4.12
612 781 6.708285 AGGTAGTAACTTAACACATCCCAAG 58.292 40.000 0.00 0.00 0.00 3.61
613 782 6.499350 AGGTAGTAACTTAACACATCCCAAGA 59.501 38.462 0.00 0.00 0.00 3.02
614 783 6.592994 GGTAGTAACTTAACACATCCCAAGAC 59.407 42.308 0.00 0.00 0.00 3.01
615 784 6.182507 AGTAACTTAACACATCCCAAGACA 57.817 37.500 0.00 0.00 0.00 3.41
616 785 6.597562 AGTAACTTAACACATCCCAAGACAA 58.402 36.000 0.00 0.00 0.00 3.18
617 786 7.231467 AGTAACTTAACACATCCCAAGACAAT 58.769 34.615 0.00 0.00 0.00 2.71
618 787 6.976934 AACTTAACACATCCCAAGACAATT 57.023 33.333 0.00 0.00 0.00 2.32
619 788 6.976934 ACTTAACACATCCCAAGACAATTT 57.023 33.333 0.00 0.00 0.00 1.82
620 789 7.360113 ACTTAACACATCCCAAGACAATTTT 57.640 32.000 0.00 0.00 0.00 1.82
621 790 7.209475 ACTTAACACATCCCAAGACAATTTTG 58.791 34.615 0.00 0.00 0.00 2.44
622 791 5.612725 AACACATCCCAAGACAATTTTGT 57.387 34.783 0.00 0.00 45.65 2.83
623 792 5.612725 ACACATCCCAAGACAATTTTGTT 57.387 34.783 0.00 0.00 42.43 2.83
624 793 5.988287 ACACATCCCAAGACAATTTTGTTT 58.012 33.333 0.00 0.00 42.43 2.83
625 794 7.118496 ACACATCCCAAGACAATTTTGTTTA 57.882 32.000 0.00 0.00 42.43 2.01
626 795 7.734942 ACACATCCCAAGACAATTTTGTTTAT 58.265 30.769 0.00 0.00 42.43 1.40
627 796 7.656948 ACACATCCCAAGACAATTTTGTTTATG 59.343 33.333 0.00 0.00 42.43 1.90
628 797 7.656948 CACATCCCAAGACAATTTTGTTTATGT 59.343 33.333 0.00 0.00 42.43 2.29
629 798 7.656948 ACATCCCAAGACAATTTTGTTTATGTG 59.343 33.333 0.00 0.00 42.43 3.21
630 799 6.520272 TCCCAAGACAATTTTGTTTATGTGG 58.480 36.000 0.00 0.00 42.43 4.17
631 800 5.179182 CCCAAGACAATTTTGTTTATGTGGC 59.821 40.000 0.00 0.00 42.43 5.01
632 801 5.757320 CCAAGACAATTTTGTTTATGTGGCA 59.243 36.000 0.00 0.00 42.43 4.92
633 802 6.259608 CCAAGACAATTTTGTTTATGTGGCAA 59.740 34.615 0.00 0.00 42.43 4.52
634 803 7.346695 CAAGACAATTTTGTTTATGTGGCAAG 58.653 34.615 0.00 0.00 42.43 4.01
635 804 6.581712 AGACAATTTTGTTTATGTGGCAAGT 58.418 32.000 0.00 0.00 42.43 3.16
636 805 7.721402 AGACAATTTTGTTTATGTGGCAAGTA 58.279 30.769 0.00 0.00 42.43 2.24
637 806 8.367156 AGACAATTTTGTTTATGTGGCAAGTAT 58.633 29.630 0.00 0.00 42.43 2.12
638 807 8.900983 ACAATTTTGTTTATGTGGCAAGTATT 57.099 26.923 0.00 0.00 38.47 1.89
639 808 9.336171 ACAATTTTGTTTATGTGGCAAGTATTT 57.664 25.926 0.00 0.00 38.47 1.40
651 820 8.871629 TGTGGCAAGTATTTAATAAGGAAAGA 57.128 30.769 0.00 0.00 0.00 2.52
652 821 8.956426 TGTGGCAAGTATTTAATAAGGAAAGAG 58.044 33.333 0.00 0.00 0.00 2.85
653 822 8.406297 GTGGCAAGTATTTAATAAGGAAAGAGG 58.594 37.037 0.00 0.00 0.00 3.69
654 823 7.068226 TGGCAAGTATTTAATAAGGAAAGAGGC 59.932 37.037 0.00 0.00 0.00 4.70
655 824 7.132863 GCAAGTATTTAATAAGGAAAGAGGCG 58.867 38.462 0.00 0.00 0.00 5.52
656 825 6.862711 AGTATTTAATAAGGAAAGAGGCGC 57.137 37.500 0.00 0.00 0.00 6.53
657 826 6.592870 AGTATTTAATAAGGAAAGAGGCGCT 58.407 36.000 7.64 0.00 0.00 5.92
658 827 7.054751 AGTATTTAATAAGGAAAGAGGCGCTT 58.945 34.615 7.64 0.00 38.88 4.68
659 828 5.560966 TTTAATAAGGAAAGAGGCGCTTG 57.439 39.130 7.64 0.00 36.80 4.01
660 829 2.789409 ATAAGGAAAGAGGCGCTTGT 57.211 45.000 7.64 0.00 36.80 3.16
661 830 1.808411 TAAGGAAAGAGGCGCTTGTG 58.192 50.000 7.64 0.00 36.80 3.33
662 831 0.890996 AAGGAAAGAGGCGCTTGTGG 60.891 55.000 7.64 0.00 36.80 4.17
663 832 1.600916 GGAAAGAGGCGCTTGTGGT 60.601 57.895 7.64 0.00 36.80 4.16
664 833 0.321298 GGAAAGAGGCGCTTGTGGTA 60.321 55.000 7.64 0.00 36.80 3.25
665 834 1.519408 GAAAGAGGCGCTTGTGGTAA 58.481 50.000 7.64 0.00 36.80 2.85
666 835 1.197036 GAAAGAGGCGCTTGTGGTAAC 59.803 52.381 7.64 0.00 36.80 2.50
667 836 0.107831 AAGAGGCGCTTGTGGTAACA 59.892 50.000 7.64 0.00 39.24 2.41
668 837 2.814097 AAAGAGGCGCTTGTGGTAACAT 60.814 45.455 7.64 0.00 42.99 2.71
669 838 3.558321 AAAGAGGCGCTTGTGGTAACATA 60.558 43.478 7.64 0.00 42.99 2.29
670 839 5.045234 AAAGAGGCGCTTGTGGTAACATAA 61.045 41.667 7.64 0.00 46.24 1.90
695 864 4.178540 TGTTACTGTAACATAGCGCTTCC 58.821 43.478 25.14 0.00 43.23 3.46
696 865 2.311124 ACTGTAACATAGCGCTTCCC 57.689 50.000 18.68 0.00 0.00 3.97
697 866 1.209128 CTGTAACATAGCGCTTCCCG 58.791 55.000 18.68 4.15 40.75 5.14
698 867 0.818938 TGTAACATAGCGCTTCCCGA 59.181 50.000 18.68 0.00 40.02 5.14
699 868 1.202371 TGTAACATAGCGCTTCCCGAG 60.202 52.381 18.68 1.79 40.02 4.63
700 869 0.387929 TAACATAGCGCTTCCCGAGG 59.612 55.000 18.68 0.00 40.02 4.63
701 870 2.663188 CATAGCGCTTCCCGAGGC 60.663 66.667 18.68 0.00 40.02 4.70
702 871 3.154473 ATAGCGCTTCCCGAGGCA 61.154 61.111 18.68 0.00 40.02 4.75
703 872 2.731571 ATAGCGCTTCCCGAGGCAA 61.732 57.895 18.68 0.00 40.02 4.52
704 873 2.252072 ATAGCGCTTCCCGAGGCAAA 62.252 55.000 18.68 0.00 40.02 3.68
705 874 2.457743 TAGCGCTTCCCGAGGCAAAA 62.458 55.000 18.68 0.00 40.02 2.44
706 875 2.700773 GCGCTTCCCGAGGCAAAAT 61.701 57.895 0.00 0.00 40.02 1.82
707 876 1.137404 CGCTTCCCGAGGCAAAATG 59.863 57.895 0.00 0.00 40.02 2.32
708 877 1.305219 CGCTTCCCGAGGCAAAATGA 61.305 55.000 0.00 0.00 40.02 2.57
709 878 0.453390 GCTTCCCGAGGCAAAATGAG 59.547 55.000 0.00 0.00 33.19 2.90
710 879 1.826385 CTTCCCGAGGCAAAATGAGT 58.174 50.000 0.00 0.00 0.00 3.41
711 880 1.740025 CTTCCCGAGGCAAAATGAGTC 59.260 52.381 0.00 0.00 0.00 3.36
712 881 0.984230 TCCCGAGGCAAAATGAGTCT 59.016 50.000 0.00 0.00 0.00 3.24
713 882 2.184533 TCCCGAGGCAAAATGAGTCTA 58.815 47.619 0.00 0.00 0.00 2.59
714 883 2.771943 TCCCGAGGCAAAATGAGTCTAT 59.228 45.455 0.00 0.00 0.00 1.98
715 884 2.874701 CCCGAGGCAAAATGAGTCTATG 59.125 50.000 0.00 0.00 0.00 2.23
716 885 3.432186 CCCGAGGCAAAATGAGTCTATGA 60.432 47.826 0.00 0.00 0.00 2.15
717 886 3.806521 CCGAGGCAAAATGAGTCTATGAG 59.193 47.826 0.00 0.00 0.00 2.90
718 887 3.247173 CGAGGCAAAATGAGTCTATGAGC 59.753 47.826 0.00 0.00 0.00 4.26
719 888 4.450053 GAGGCAAAATGAGTCTATGAGCT 58.550 43.478 0.00 0.00 0.00 4.09
720 889 5.605534 GAGGCAAAATGAGTCTATGAGCTA 58.394 41.667 0.00 0.00 0.00 3.32
721 890 5.994250 AGGCAAAATGAGTCTATGAGCTAA 58.006 37.500 0.00 0.00 0.00 3.09
722 891 6.599445 AGGCAAAATGAGTCTATGAGCTAAT 58.401 36.000 0.00 0.00 0.00 1.73
723 892 7.739825 AGGCAAAATGAGTCTATGAGCTAATA 58.260 34.615 0.00 0.00 0.00 0.98
724 893 8.213679 AGGCAAAATGAGTCTATGAGCTAATAA 58.786 33.333 0.00 0.00 0.00 1.40
725 894 8.840321 GGCAAAATGAGTCTATGAGCTAATAAA 58.160 33.333 0.00 0.00 0.00 1.40
731 900 8.824159 TGAGTCTATGAGCTAATAAATGAAGC 57.176 34.615 0.00 0.00 36.48 3.86
732 901 8.424133 TGAGTCTATGAGCTAATAAATGAAGCA 58.576 33.333 0.00 0.00 38.75 3.91
733 902 9.265901 GAGTCTATGAGCTAATAAATGAAGCAA 57.734 33.333 0.00 0.00 38.75 3.91
734 903 9.790344 AGTCTATGAGCTAATAAATGAAGCAAT 57.210 29.630 0.00 0.00 38.75 3.56
740 909 9.783081 TGAGCTAATAAATGAAGCAATCTATGA 57.217 29.630 0.00 0.00 38.75 2.15
742 911 9.565090 AGCTAATAAATGAAGCAATCTATGACA 57.435 29.630 0.00 0.00 38.75 3.58
743 912 9.604626 GCTAATAAATGAAGCAATCTATGACAC 57.395 33.333 0.00 0.00 36.26 3.67
749 918 8.879342 AATGAAGCAATCTATGACACTACTAC 57.121 34.615 0.00 0.00 0.00 2.73
750 919 7.646548 TGAAGCAATCTATGACACTACTACT 57.353 36.000 0.00 0.00 0.00 2.57
751 920 8.747538 TGAAGCAATCTATGACACTACTACTA 57.252 34.615 0.00 0.00 0.00 1.82
752 921 9.355916 TGAAGCAATCTATGACACTACTACTAT 57.644 33.333 0.00 0.00 0.00 2.12
753 922 9.619316 GAAGCAATCTATGACACTACTACTATG 57.381 37.037 0.00 0.00 0.00 2.23
754 923 8.698973 AGCAATCTATGACACTACTACTATGT 57.301 34.615 0.00 0.00 0.00 2.29
755 924 9.137459 AGCAATCTATGACACTACTACTATGTT 57.863 33.333 0.00 0.00 0.00 2.71
762 931 8.928270 ATGACACTACTACTATGTTACTTTGC 57.072 34.615 0.00 0.00 0.00 3.68
763 932 7.888424 TGACACTACTACTATGTTACTTTGCA 58.112 34.615 0.00 0.00 0.00 4.08
764 933 7.811236 TGACACTACTACTATGTTACTTTGCAC 59.189 37.037 0.00 0.00 0.00 4.57
765 934 7.893658 ACACTACTACTATGTTACTTTGCACT 58.106 34.615 0.00 0.00 0.00 4.40
766 935 9.017509 ACACTACTACTATGTTACTTTGCACTA 57.982 33.333 0.00 0.00 0.00 2.74
771 940 9.587772 ACTACTATGTTACTTTGCACTATGAAG 57.412 33.333 0.00 0.00 0.00 3.02
772 941 7.849804 ACTATGTTACTTTGCACTATGAAGG 57.150 36.000 0.00 0.00 0.00 3.46
773 942 7.394816 ACTATGTTACTTTGCACTATGAAGGT 58.605 34.615 0.00 0.00 0.00 3.50
774 943 8.537016 ACTATGTTACTTTGCACTATGAAGGTA 58.463 33.333 0.00 0.00 0.00 3.08
775 944 7.849804 ATGTTACTTTGCACTATGAAGGTAG 57.150 36.000 0.00 0.00 0.00 3.18
776 945 6.765403 TGTTACTTTGCACTATGAAGGTAGT 58.235 36.000 0.00 0.00 35.34 2.73
777 946 7.898918 TGTTACTTTGCACTATGAAGGTAGTA 58.101 34.615 0.00 0.00 33.29 1.82
778 947 8.369424 TGTTACTTTGCACTATGAAGGTAGTAA 58.631 33.333 0.00 0.00 33.29 2.24
779 948 8.654215 GTTACTTTGCACTATGAAGGTAGTAAC 58.346 37.037 0.00 0.00 38.55 2.50
780 949 7.005709 ACTTTGCACTATGAAGGTAGTAACT 57.994 36.000 0.00 0.00 33.29 2.24
781 950 7.450903 ACTTTGCACTATGAAGGTAGTAACTT 58.549 34.615 0.00 0.00 33.29 2.66
782 951 8.591072 ACTTTGCACTATGAAGGTAGTAACTTA 58.409 33.333 0.00 0.00 33.29 2.24
783 952 8.997621 TTTGCACTATGAAGGTAGTAACTTAG 57.002 34.615 0.00 0.00 33.29 2.18
784 953 7.949690 TGCACTATGAAGGTAGTAACTTAGA 57.050 36.000 0.00 0.00 33.29 2.10
785 954 7.769220 TGCACTATGAAGGTAGTAACTTAGAC 58.231 38.462 0.00 0.00 33.29 2.59
786 955 7.614583 TGCACTATGAAGGTAGTAACTTAGACT 59.385 37.037 0.00 0.00 33.29 3.24
787 956 9.118300 GCACTATGAAGGTAGTAACTTAGACTA 57.882 37.037 0.00 0.00 33.29 2.59
792 961 8.558973 TGAAGGTAGTAACTTAGACTAGTGTC 57.441 38.462 0.00 0.00 43.22 3.67
793 962 8.159447 TGAAGGTAGTAACTTAGACTAGTGTCA 58.841 37.037 0.00 0.00 45.20 3.58
794 963 9.176460 GAAGGTAGTAACTTAGACTAGTGTCAT 57.824 37.037 0.00 0.00 45.20 3.06
798 967 9.881529 GTAGTAACTTAGACTAGTGTCATATGC 57.118 37.037 0.00 0.00 45.20 3.14
799 968 8.521170 AGTAACTTAGACTAGTGTCATATGCA 57.479 34.615 0.00 0.00 45.20 3.96
800 969 9.137459 AGTAACTTAGACTAGTGTCATATGCAT 57.863 33.333 3.79 3.79 45.20 3.96
801 970 9.186323 GTAACTTAGACTAGTGTCATATGCATG 57.814 37.037 10.16 0.00 45.20 4.06
802 971 7.588497 ACTTAGACTAGTGTCATATGCATGA 57.412 36.000 10.16 0.00 45.20 3.07
819 988 6.100404 TGCATGACACTAGTATATGCATGA 57.900 37.500 24.99 11.79 45.53 3.07
820 989 5.928264 TGCATGACACTAGTATATGCATGAC 59.072 40.000 24.99 7.47 45.53 3.06
821 990 5.349817 GCATGACACTAGTATATGCATGACC 59.650 44.000 22.87 0.00 42.93 4.02
822 991 6.458210 CATGACACTAGTATATGCATGACCA 58.542 40.000 10.16 0.52 34.79 4.02
823 992 6.089249 TGACACTAGTATATGCATGACCAG 57.911 41.667 10.16 8.32 0.00 4.00
826 995 4.020751 CACTAGTATATGCATGACCAGCCT 60.021 45.833 10.16 0.00 0.00 4.58
828 997 5.780282 ACTAGTATATGCATGACCAGCCTTA 59.220 40.000 10.16 0.00 0.00 2.69
843 1012 4.517285 CAGCCTTAGATTCAGCTTAACCA 58.483 43.478 0.00 0.00 31.93 3.67
847 1016 5.590259 GCCTTAGATTCAGCTTAACCAATCA 59.410 40.000 0.00 0.00 0.00 2.57
850 1019 8.689972 CCTTAGATTCAGCTTAACCAATCATTT 58.310 33.333 0.00 0.00 0.00 2.32
852 1021 7.707624 AGATTCAGCTTAACCAATCATTTGA 57.292 32.000 0.00 0.00 34.60 2.69
853 1022 8.302515 AGATTCAGCTTAACCAATCATTTGAT 57.697 30.769 0.00 0.00 34.60 2.57
899 1070 6.802608 AGTAAACTAAAACTCCTTTTGCCAC 58.197 36.000 0.00 0.00 31.74 5.01
912 1083 2.254546 TTGCCACCATCGCCTATAAG 57.745 50.000 0.00 0.00 0.00 1.73
915 1086 2.143925 GCCACCATCGCCTATAAGAAC 58.856 52.381 0.00 0.00 0.00 3.01
929 1100 2.841442 AAGAACCCTCTGAAACCTCG 57.159 50.000 0.00 0.00 30.03 4.63
934 1105 0.685097 CCCTCTGAAACCTCGAACCA 59.315 55.000 0.00 0.00 0.00 3.67
935 1106 1.608283 CCCTCTGAAACCTCGAACCAC 60.608 57.143 0.00 0.00 0.00 4.16
941 1112 1.597663 GAAACCTCGAACCACACACAG 59.402 52.381 0.00 0.00 0.00 3.66
991 1162 0.537371 CCACCCACACACTTTCCTCC 60.537 60.000 0.00 0.00 0.00 4.30
1080 1254 1.227118 GCTAGCAGAGAAGGGCGTC 60.227 63.158 10.63 0.00 34.54 5.19
1110 1284 3.388024 AGTACAGTGAGCAGAACCTTGAA 59.612 43.478 0.00 0.00 0.00 2.69
1119 1293 3.135530 AGCAGAACCTTGAACAGAAGAGT 59.864 43.478 0.00 0.00 0.00 3.24
1128 1302 2.067766 GAACAGAAGAGTGAGCTGCTG 58.932 52.381 7.01 0.00 33.03 4.41
1197 1371 4.502187 AGACCTGTCTGCGAGTCA 57.498 55.556 0.00 0.00 38.75 3.41
1211 1385 2.543445 GCGAGTCACTCATCATCCTCAG 60.543 54.545 5.45 0.00 0.00 3.35
1226 1400 1.018148 CTCAGCTACATCGACGAGGT 58.982 55.000 19.81 19.81 0.00 3.85
1266 1440 3.858634 CTCCCCCGGGACCCCTAT 61.859 72.222 26.32 0.00 39.76 2.57
1317 1491 6.792326 TGACTACATCGACAACAAGGTATAG 58.208 40.000 0.00 0.00 0.00 1.31
1328 1502 6.779860 ACAACAAGGTATAGACAATGGAACT 58.220 36.000 0.00 0.00 0.00 3.01
1345 1519 6.721571 TGGAACTTCGCTTTATTAAGACAG 57.278 37.500 0.00 0.00 32.92 3.51
1354 1528 6.256539 TCGCTTTATTAAGACAGCAGAGAATG 59.743 38.462 8.79 0.00 32.92 2.67
1427 1669 8.591114 TTTCTCTATACACCTAGTAACAAGCT 57.409 34.615 0.00 0.00 36.05 3.74
1484 1727 0.179119 GCTTGCCATGAATCCAGCAC 60.179 55.000 0.00 0.00 34.37 4.40
1485 1728 1.179152 CTTGCCATGAATCCAGCACA 58.821 50.000 0.00 0.00 34.37 4.57
1600 1843 2.264794 GACCCGCCTGTTGACGAT 59.735 61.111 0.00 0.00 0.00 3.73
1640 1883 2.494870 GCAGGCCAAGAAAGACATGATT 59.505 45.455 5.01 0.00 0.00 2.57
1646 1889 1.755179 AGAAAGACATGATTGGGGCG 58.245 50.000 0.00 0.00 0.00 6.13
1661 1904 2.125350 GCGCTCAAGACCCTGGAG 60.125 66.667 0.00 0.00 34.80 3.86
1664 1907 1.599576 GCTCAAGACCCTGGAGTCC 59.400 63.158 0.73 0.73 34.22 3.85
1693 1936 2.357009 GTGATAAGGACTACTTCGGCGA 59.643 50.000 4.99 4.99 40.64 5.54
1698 1941 1.022735 GGACTACTTCGGCGATGAGA 58.977 55.000 26.72 14.00 0.00 3.27
1706 1949 2.181021 GGCGATGAGACGTTCGGT 59.819 61.111 9.21 0.00 35.93 4.69
1709 1952 0.788391 GCGATGAGACGTTCGGTTTT 59.212 50.000 9.21 0.00 35.93 2.43
1719 1962 1.600013 CGTTCGGTTTTGTGGACATCA 59.400 47.619 0.00 0.00 0.00 3.07
1730 1973 0.671796 TGGACATCACGTTCGTGACT 59.328 50.000 26.16 16.11 46.14 3.41
1793 2036 2.932234 CGTCGAGGAACACTGCCCT 61.932 63.158 0.00 0.00 35.02 5.19
1795 2038 0.606604 GTCGAGGAACACTGCCCTAA 59.393 55.000 0.00 0.00 31.84 2.69
1903 2146 1.407437 GGAGGAGTATGGTGCCAACTG 60.407 57.143 9.58 0.00 0.00 3.16
1908 2151 3.146066 GAGTATGGTGCCAACTGAACAA 58.854 45.455 9.58 0.00 0.00 2.83
1913 2156 3.357203 TGGTGCCAACTGAACAAAGTAA 58.643 40.909 0.00 0.00 0.00 2.24
1975 2218 1.322442 GGCTGTGGCATTTATCTCCC 58.678 55.000 0.00 0.00 40.87 4.30
1977 2220 1.678101 GCTGTGGCATTTATCTCCCAC 59.322 52.381 0.00 1.87 46.10 4.61
2007 2250 1.338020 CCCTTTGTCACTCAACTTGGC 59.662 52.381 0.00 0.00 35.61 4.52
2025 2289 9.218440 CAACTTGGCCAAACTTTATGAAAATAT 57.782 29.630 20.91 0.00 0.00 1.28
2143 2407 4.715534 TCCCTTTGGATTACAACACTCA 57.284 40.909 0.00 0.00 39.19 3.41
2158 2422 2.014857 CACTCAGACATGCCAATGAGG 58.985 52.381 16.66 6.59 42.76 3.86
2240 2505 6.166982 TGGACATATTTAACGACACATGTGA 58.833 36.000 31.94 8.27 0.00 3.58
2242 2507 7.982354 TGGACATATTTAACGACACATGTGATA 59.018 33.333 31.94 16.66 0.00 2.15
2247 2512 9.725019 ATATTTAACGACACATGTGATATCCAT 57.275 29.630 31.94 16.02 0.00 3.41
2362 2627 7.264373 ACTTCTAAGTGAAACAAAGACATGG 57.736 36.000 0.00 0.00 41.43 3.66
2372 2637 6.652481 TGAAACAAAGACATGGCAAAAGAAAA 59.348 30.769 0.00 0.00 0.00 2.29
2374 2639 7.628769 AACAAAGACATGGCAAAAGAAAATT 57.371 28.000 0.00 0.00 0.00 1.82
2434 2699 1.796017 TTCATATACCGGGCAGTCCA 58.204 50.000 6.32 0.00 34.36 4.02
2455 2720 8.001875 AGTCCAGAAGTTCTCAAGCTATATAGA 58.998 37.037 14.16 0.00 0.00 1.98
2481 2746 9.724839 ATTTTTCATCAAAATTCAAGCTTTGTG 57.275 25.926 0.00 0.00 41.57 3.33
2486 2751 7.765360 TCATCAAAATTCAAGCTTTGTGAAGTT 59.235 29.630 6.51 6.51 43.08 2.66
2497 2762 6.919721 AGCTTTGTGAAGTTTGACAAGTTTA 58.080 32.000 0.00 0.00 35.77 2.01
2681 2949 6.822442 TGTGCTATATTTATGACGAAGGGAA 58.178 36.000 0.00 0.00 0.00 3.97
2834 3104 1.001181 CTTTACGGTTCTTCGACCCCA 59.999 52.381 0.00 0.00 36.28 4.96
2886 3156 1.475213 GCTAGCCCCCACTAACATGTC 60.475 57.143 2.29 0.00 0.00 3.06
2889 3159 0.107165 GCCCCCACTAACATGTCTCC 60.107 60.000 0.00 0.00 0.00 3.71
2890 3160 1.584724 CCCCCACTAACATGTCTCCT 58.415 55.000 0.00 0.00 0.00 3.69
2891 3161 2.759355 CCCCCACTAACATGTCTCCTA 58.241 52.381 0.00 0.00 0.00 2.94
2892 3162 3.112263 CCCCCACTAACATGTCTCCTAA 58.888 50.000 0.00 0.00 0.00 2.69
2893 3163 3.118371 CCCCCACTAACATGTCTCCTAAC 60.118 52.174 0.00 0.00 0.00 2.34
2895 3165 4.164221 CCCCACTAACATGTCTCCTAACAT 59.836 45.833 0.00 0.00 40.49 2.71
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
106 107 4.153475 TCCAAGTAGCAAACGCAGAAATAC 59.847 41.667 0.00 0.00 0.00 1.89
112 113 1.197721 CCTTCCAAGTAGCAAACGCAG 59.802 52.381 0.00 0.00 0.00 5.18
169 178 7.964604 AGACAACCATTCAGTTAGTCTAAAC 57.035 36.000 0.00 0.00 36.86 2.01
182 193 4.514066 ACGTGACCTAAAAGACAACCATTC 59.486 41.667 0.00 0.00 0.00 2.67
188 199 7.318141 CCTCTATAACGTGACCTAAAAGACAA 58.682 38.462 0.00 0.00 0.00 3.18
190 201 5.747675 GCCTCTATAACGTGACCTAAAAGAC 59.252 44.000 0.00 0.00 0.00 3.01
219 230 0.462047 GTATGCCCGACAGGTGGAAG 60.462 60.000 0.00 0.00 38.26 3.46
226 237 2.100749 TCTGTATGTGTATGCCCGACAG 59.899 50.000 0.00 0.00 35.30 3.51
236 247 4.055360 GCAGTGTTGTGTCTGTATGTGTA 58.945 43.478 0.00 0.00 34.57 2.90
246 257 0.032952 TAGACCGGCAGTGTTGTGTC 59.967 55.000 0.00 0.00 0.00 3.67
255 266 4.124851 AGACACTTAATTAGACCGGCAG 57.875 45.455 0.00 0.00 0.00 4.85
290 301 2.693591 AGCTCCTTTCCATTGCATCATG 59.306 45.455 0.00 0.00 0.00 3.07
310 321 9.650539 CACATATTAGATTTACAGGAGATCCAG 57.349 37.037 0.92 0.00 38.89 3.86
353 364 0.685097 TTCCCTAGCTTGCGAGTTGT 59.315 50.000 2.14 0.00 0.00 3.32
360 371 0.523519 GTGCTTGTTCCCTAGCTTGC 59.476 55.000 0.00 0.00 39.73 4.01
381 393 3.443045 GCCATGGCTGGACCGTTG 61.443 66.667 29.98 0.00 46.37 4.10
428 572 8.645730 TTCAAGTACACTATCTCTACTCGTAG 57.354 38.462 0.00 0.00 34.56 3.51
440 584 7.062749 TGGTTCAAGACTTCAAGTACACTAT 57.937 36.000 0.00 0.00 0.00 2.12
441 585 6.474140 TGGTTCAAGACTTCAAGTACACTA 57.526 37.500 0.00 0.00 0.00 2.74
442 586 5.353394 TGGTTCAAGACTTCAAGTACACT 57.647 39.130 0.00 0.00 0.00 3.55
443 587 5.815740 TCTTGGTTCAAGACTTCAAGTACAC 59.184 40.000 11.87 0.00 44.27 2.90
444 588 5.984725 TCTTGGTTCAAGACTTCAAGTACA 58.015 37.500 11.87 0.00 44.27 2.90
455 599 5.827797 AGCTGTGTATTTTCTTGGTTCAAGA 59.172 36.000 6.28 6.28 46.93 3.02
456 600 6.076981 AGCTGTGTATTTTCTTGGTTCAAG 57.923 37.500 1.53 1.53 42.25 3.02
457 601 5.009610 GGAGCTGTGTATTTTCTTGGTTCAA 59.990 40.000 0.00 0.00 0.00 2.69
459 603 4.518970 TGGAGCTGTGTATTTTCTTGGTTC 59.481 41.667 0.00 0.00 0.00 3.62
460 604 4.469657 TGGAGCTGTGTATTTTCTTGGTT 58.530 39.130 0.00 0.00 0.00 3.67
461 605 4.098914 TGGAGCTGTGTATTTTCTTGGT 57.901 40.909 0.00 0.00 0.00 3.67
463 607 5.885230 TCATGGAGCTGTGTATTTTCTTG 57.115 39.130 0.00 0.00 0.00 3.02
466 610 5.182001 ACACTTCATGGAGCTGTGTATTTTC 59.818 40.000 0.00 0.00 39.65 2.29
467 611 5.072741 ACACTTCATGGAGCTGTGTATTTT 58.927 37.500 0.00 0.00 39.65 1.82
468 612 4.655963 ACACTTCATGGAGCTGTGTATTT 58.344 39.130 0.00 0.00 39.65 1.40
469 613 4.292186 ACACTTCATGGAGCTGTGTATT 57.708 40.909 0.00 0.00 39.65 1.89
470 614 3.988976 ACACTTCATGGAGCTGTGTAT 57.011 42.857 0.00 0.00 39.65 2.29
471 615 3.832490 AGTACACTTCATGGAGCTGTGTA 59.168 43.478 15.49 9.23 41.35 2.90
472 616 2.634940 AGTACACTTCATGGAGCTGTGT 59.365 45.455 15.49 10.06 43.18 3.72
473 617 3.325293 AGTACACTTCATGGAGCTGTG 57.675 47.619 15.49 5.21 35.09 3.66
474 618 3.324846 TCAAGTACACTTCATGGAGCTGT 59.675 43.478 0.00 7.60 33.11 4.40
475 619 3.930336 TCAAGTACACTTCATGGAGCTG 58.070 45.455 0.00 1.52 33.11 4.24
476 620 4.319177 GTTCAAGTACACTTCATGGAGCT 58.681 43.478 0.00 0.00 33.11 4.09
477 621 3.437049 GGTTCAAGTACACTTCATGGAGC 59.563 47.826 0.00 0.00 33.11 4.70
478 622 4.641396 TGGTTCAAGTACACTTCATGGAG 58.359 43.478 0.00 0.00 33.11 3.86
479 623 4.698201 TGGTTCAAGTACACTTCATGGA 57.302 40.909 0.00 0.00 33.11 3.41
480 624 5.063204 TCTTGGTTCAAGTACACTTCATGG 58.937 41.667 7.42 0.00 41.66 3.66
481 625 6.618287 TTCTTGGTTCAAGTACACTTCATG 57.382 37.500 7.42 0.00 41.66 3.07
482 626 7.639113 TTTTCTTGGTTCAAGTACACTTCAT 57.361 32.000 7.42 0.00 41.66 2.57
483 627 7.639113 ATTTTCTTGGTTCAAGTACACTTCA 57.361 32.000 7.42 0.00 41.66 3.02
484 628 8.617809 TGTATTTTCTTGGTTCAAGTACACTTC 58.382 33.333 7.42 0.00 41.66 3.01
485 629 8.403236 GTGTATTTTCTTGGTTCAAGTACACTT 58.597 33.333 20.08 0.00 41.53 3.16
551 720 9.069082 CACTATGACTAGCCTTTAGTACTACAT 57.931 37.037 0.91 2.45 0.00 2.29
553 722 7.040548 CCCACTATGACTAGCCTTTAGTACTAC 60.041 44.444 0.91 0.00 0.00 2.73
555 724 5.834204 CCCACTATGACTAGCCTTTAGTACT 59.166 44.000 0.00 0.00 0.00 2.73
556 725 5.010820 CCCCACTATGACTAGCCTTTAGTAC 59.989 48.000 0.00 0.00 0.00 2.73
557 726 5.145564 CCCCACTATGACTAGCCTTTAGTA 58.854 45.833 0.00 0.00 0.00 1.82
558 727 3.967987 CCCCACTATGACTAGCCTTTAGT 59.032 47.826 0.00 0.00 0.00 2.24
559 728 3.325135 CCCCCACTATGACTAGCCTTTAG 59.675 52.174 0.00 0.00 0.00 1.85
560 729 3.311103 ACCCCCACTATGACTAGCCTTTA 60.311 47.826 0.00 0.00 0.00 1.85
562 731 1.009675 ACCCCCACTATGACTAGCCTT 59.990 52.381 0.00 0.00 0.00 4.35
564 733 2.393630 TACCCCCACTATGACTAGCC 57.606 55.000 0.00 0.00 0.00 3.93
565 734 4.976540 AATTACCCCCACTATGACTAGC 57.023 45.455 0.00 0.00 0.00 3.42
566 735 6.557633 ACCTAAATTACCCCCACTATGACTAG 59.442 42.308 0.00 0.00 0.00 2.57
567 736 6.455241 ACCTAAATTACCCCCACTATGACTA 58.545 40.000 0.00 0.00 0.00 2.59
568 737 5.294473 ACCTAAATTACCCCCACTATGACT 58.706 41.667 0.00 0.00 0.00 3.41
569 738 5.641789 ACCTAAATTACCCCCACTATGAC 57.358 43.478 0.00 0.00 0.00 3.06
570 739 6.455241 ACTACCTAAATTACCCCCACTATGA 58.545 40.000 0.00 0.00 0.00 2.15
571 740 6.758806 ACTACCTAAATTACCCCCACTATG 57.241 41.667 0.00 0.00 0.00 2.23
572 741 8.076251 AGTTACTACCTAAATTACCCCCACTAT 58.924 37.037 0.00 0.00 0.00 2.12
573 742 7.430007 AGTTACTACCTAAATTACCCCCACTA 58.570 38.462 0.00 0.00 0.00 2.74
574 743 6.274674 AGTTACTACCTAAATTACCCCCACT 58.725 40.000 0.00 0.00 0.00 4.00
575 744 6.566079 AGTTACTACCTAAATTACCCCCAC 57.434 41.667 0.00 0.00 0.00 4.61
576 745 8.548025 GTTAAGTTACTACCTAAATTACCCCCA 58.452 37.037 0.00 0.00 27.24 4.96
577 746 8.548025 TGTTAAGTTACTACCTAAATTACCCCC 58.452 37.037 0.00 0.00 27.24 5.40
578 747 9.383519 GTGTTAAGTTACTACCTAAATTACCCC 57.616 37.037 0.00 0.00 27.24 4.95
579 748 9.942850 TGTGTTAAGTTACTACCTAAATTACCC 57.057 33.333 0.00 0.00 27.24 3.69
583 752 9.676861 GGGATGTGTTAAGTTACTACCTAAATT 57.323 33.333 0.00 0.00 0.00 1.82
584 753 8.828751 TGGGATGTGTTAAGTTACTACCTAAAT 58.171 33.333 0.00 0.00 0.00 1.40
585 754 8.204903 TGGGATGTGTTAAGTTACTACCTAAA 57.795 34.615 0.00 0.00 0.00 1.85
586 755 7.795534 TGGGATGTGTTAAGTTACTACCTAA 57.204 36.000 0.00 0.00 0.00 2.69
587 756 7.675195 TCTTGGGATGTGTTAAGTTACTACCTA 59.325 37.037 0.00 0.00 0.00 3.08
588 757 6.499350 TCTTGGGATGTGTTAAGTTACTACCT 59.501 38.462 0.00 0.00 0.00 3.08
589 758 6.592994 GTCTTGGGATGTGTTAAGTTACTACC 59.407 42.308 0.00 0.00 0.00 3.18
590 759 7.156673 TGTCTTGGGATGTGTTAAGTTACTAC 58.843 38.462 0.00 0.00 0.00 2.73
591 760 7.305813 TGTCTTGGGATGTGTTAAGTTACTA 57.694 36.000 0.00 0.00 0.00 1.82
592 761 6.182507 TGTCTTGGGATGTGTTAAGTTACT 57.817 37.500 0.00 0.00 0.00 2.24
593 762 6.870971 TTGTCTTGGGATGTGTTAAGTTAC 57.129 37.500 0.00 0.00 0.00 2.50
594 763 8.472007 AAATTGTCTTGGGATGTGTTAAGTTA 57.528 30.769 0.00 0.00 0.00 2.24
595 764 6.976934 AATTGTCTTGGGATGTGTTAAGTT 57.023 33.333 0.00 0.00 0.00 2.66
596 765 6.976934 AAATTGTCTTGGGATGTGTTAAGT 57.023 33.333 0.00 0.00 0.00 2.24
597 766 7.209475 ACAAAATTGTCTTGGGATGTGTTAAG 58.791 34.615 0.00 0.00 36.50 1.85
598 767 7.118496 ACAAAATTGTCTTGGGATGTGTTAA 57.882 32.000 0.00 0.00 36.50 2.01
599 768 6.723298 ACAAAATTGTCTTGGGATGTGTTA 57.277 33.333 0.00 0.00 36.50 2.41
600 769 5.612725 ACAAAATTGTCTTGGGATGTGTT 57.387 34.783 0.00 0.00 36.50 3.32
601 770 5.612725 AACAAAATTGTCTTGGGATGTGT 57.387 34.783 0.00 0.00 41.31 3.72
602 771 7.656948 ACATAAACAAAATTGTCTTGGGATGTG 59.343 33.333 0.00 0.00 41.31 3.21
603 772 7.656948 CACATAAACAAAATTGTCTTGGGATGT 59.343 33.333 0.00 1.85 41.31 3.06
604 773 7.118101 CCACATAAACAAAATTGTCTTGGGATG 59.882 37.037 0.00 1.33 41.31 3.51
605 774 7.160726 CCACATAAACAAAATTGTCTTGGGAT 58.839 34.615 0.00 0.00 41.31 3.85
606 775 6.520272 CCACATAAACAAAATTGTCTTGGGA 58.480 36.000 0.00 0.00 41.31 4.37
607 776 5.179182 GCCACATAAACAAAATTGTCTTGGG 59.821 40.000 0.00 0.00 41.31 4.12
608 777 5.757320 TGCCACATAAACAAAATTGTCTTGG 59.243 36.000 0.00 3.90 41.31 3.61
609 778 6.841443 TGCCACATAAACAAAATTGTCTTG 57.159 33.333 0.00 1.31 41.31 3.02
610 779 7.047271 ACTTGCCACATAAACAAAATTGTCTT 58.953 30.769 0.00 0.28 41.31 3.01
611 780 6.581712 ACTTGCCACATAAACAAAATTGTCT 58.418 32.000 0.00 0.00 41.31 3.41
612 781 6.843069 ACTTGCCACATAAACAAAATTGTC 57.157 33.333 0.00 0.00 41.31 3.18
613 782 8.900983 AATACTTGCCACATAAACAAAATTGT 57.099 26.923 0.00 0.00 44.72 2.71
625 794 9.474313 TCTTTCCTTATTAAATACTTGCCACAT 57.526 29.630 0.00 0.00 0.00 3.21
626 795 8.871629 TCTTTCCTTATTAAATACTTGCCACA 57.128 30.769 0.00 0.00 0.00 4.17
627 796 8.406297 CCTCTTTCCTTATTAAATACTTGCCAC 58.594 37.037 0.00 0.00 0.00 5.01
628 797 7.068226 GCCTCTTTCCTTATTAAATACTTGCCA 59.932 37.037 0.00 0.00 0.00 4.92
629 798 7.426410 GCCTCTTTCCTTATTAAATACTTGCC 58.574 38.462 0.00 0.00 0.00 4.52
630 799 7.132863 CGCCTCTTTCCTTATTAAATACTTGC 58.867 38.462 0.00 0.00 0.00 4.01
631 800 7.012421 AGCGCCTCTTTCCTTATTAAATACTTG 59.988 37.037 2.29 0.00 0.00 3.16
632 801 7.054751 AGCGCCTCTTTCCTTATTAAATACTT 58.945 34.615 2.29 0.00 0.00 2.24
633 802 6.592870 AGCGCCTCTTTCCTTATTAAATACT 58.407 36.000 2.29 0.00 0.00 2.12
634 803 6.862711 AGCGCCTCTTTCCTTATTAAATAC 57.137 37.500 2.29 0.00 0.00 1.89
635 804 6.826741 ACAAGCGCCTCTTTCCTTATTAAATA 59.173 34.615 2.29 0.00 31.27 1.40
636 805 5.652452 ACAAGCGCCTCTTTCCTTATTAAAT 59.348 36.000 2.29 0.00 31.27 1.40
637 806 5.007682 ACAAGCGCCTCTTTCCTTATTAAA 58.992 37.500 2.29 0.00 31.27 1.52
638 807 4.394920 CACAAGCGCCTCTTTCCTTATTAA 59.605 41.667 2.29 0.00 31.27 1.40
639 808 3.938963 CACAAGCGCCTCTTTCCTTATTA 59.061 43.478 2.29 0.00 31.27 0.98
640 809 2.749621 CACAAGCGCCTCTTTCCTTATT 59.250 45.455 2.29 0.00 31.27 1.40
641 810 2.359900 CACAAGCGCCTCTTTCCTTAT 58.640 47.619 2.29 0.00 31.27 1.73
642 811 1.610624 CCACAAGCGCCTCTTTCCTTA 60.611 52.381 2.29 0.00 31.27 2.69
643 812 0.890996 CCACAAGCGCCTCTTTCCTT 60.891 55.000 2.29 0.00 31.27 3.36
644 813 1.302832 CCACAAGCGCCTCTTTCCT 60.303 57.895 2.29 0.00 31.27 3.36
645 814 0.321298 TACCACAAGCGCCTCTTTCC 60.321 55.000 2.29 0.00 31.27 3.13
646 815 1.197036 GTTACCACAAGCGCCTCTTTC 59.803 52.381 2.29 0.00 31.27 2.62
647 816 1.235724 GTTACCACAAGCGCCTCTTT 58.764 50.000 2.29 0.00 31.27 2.52
648 817 0.107831 TGTTACCACAAGCGCCTCTT 59.892 50.000 2.29 0.00 34.78 2.85
649 818 0.324943 ATGTTACCACAAGCGCCTCT 59.675 50.000 2.29 0.00 36.16 3.69
650 819 2.018542 TATGTTACCACAAGCGCCTC 57.981 50.000 2.29 0.00 36.16 4.70
651 820 2.483014 TTATGTTACCACAAGCGCCT 57.517 45.000 2.29 0.00 36.16 5.52
652 821 4.274950 ACATATTATGTTACCACAAGCGCC 59.725 41.667 2.29 0.00 41.63 6.53
653 822 5.418310 ACATATTATGTTACCACAAGCGC 57.582 39.130 0.00 0.00 41.63 5.92
674 843 3.554731 GGGAAGCGCTATGTTACAGTAAC 59.445 47.826 12.05 15.58 39.11 2.50
675 844 3.735820 CGGGAAGCGCTATGTTACAGTAA 60.736 47.826 12.05 0.00 0.00 2.24
676 845 2.223641 CGGGAAGCGCTATGTTACAGTA 60.224 50.000 12.05 0.00 0.00 2.74
677 846 1.470979 CGGGAAGCGCTATGTTACAGT 60.471 52.381 12.05 0.00 0.00 3.55
678 847 1.202371 TCGGGAAGCGCTATGTTACAG 60.202 52.381 12.05 0.00 0.00 2.74
679 848 0.818938 TCGGGAAGCGCTATGTTACA 59.181 50.000 12.05 0.00 0.00 2.41
680 849 1.488527 CTCGGGAAGCGCTATGTTAC 58.511 55.000 12.05 0.00 0.00 2.50
681 850 0.387929 CCTCGGGAAGCGCTATGTTA 59.612 55.000 12.05 0.00 0.00 2.41
682 851 1.144057 CCTCGGGAAGCGCTATGTT 59.856 57.895 12.05 0.00 0.00 2.71
683 852 2.815308 CCTCGGGAAGCGCTATGT 59.185 61.111 12.05 0.00 0.00 2.29
684 853 2.663188 GCCTCGGGAAGCGCTATG 60.663 66.667 12.05 0.24 0.00 2.23
685 854 2.252072 TTTGCCTCGGGAAGCGCTAT 62.252 55.000 12.05 0.00 0.00 2.97
686 855 2.457743 TTTTGCCTCGGGAAGCGCTA 62.458 55.000 12.05 0.00 0.00 4.26
687 856 3.842925 TTTTGCCTCGGGAAGCGCT 62.843 57.895 2.64 2.64 0.00 5.92
688 857 2.700773 ATTTTGCCTCGGGAAGCGC 61.701 57.895 0.00 0.00 0.00 5.92
689 858 1.137404 CATTTTGCCTCGGGAAGCG 59.863 57.895 0.00 0.00 0.00 4.68
690 859 0.453390 CTCATTTTGCCTCGGGAAGC 59.547 55.000 0.00 0.00 0.00 3.86
691 860 1.740025 GACTCATTTTGCCTCGGGAAG 59.260 52.381 0.00 0.00 0.00 3.46
692 861 1.351017 AGACTCATTTTGCCTCGGGAA 59.649 47.619 0.00 0.00 0.00 3.97
693 862 0.984230 AGACTCATTTTGCCTCGGGA 59.016 50.000 0.00 0.00 0.00 5.14
694 863 2.691409 TAGACTCATTTTGCCTCGGG 57.309 50.000 0.00 0.00 0.00 5.14
695 864 3.797039 TCATAGACTCATTTTGCCTCGG 58.203 45.455 0.00 0.00 0.00 4.63
696 865 3.247173 GCTCATAGACTCATTTTGCCTCG 59.753 47.826 0.00 0.00 0.00 4.63
697 866 4.450053 AGCTCATAGACTCATTTTGCCTC 58.550 43.478 0.00 0.00 0.00 4.70
698 867 4.500499 AGCTCATAGACTCATTTTGCCT 57.500 40.909 0.00 0.00 0.00 4.75
699 868 6.874288 ATTAGCTCATAGACTCATTTTGCC 57.126 37.500 0.00 0.00 0.00 4.52
705 874 9.434420 GCTTCATTTATTAGCTCATAGACTCAT 57.566 33.333 0.00 0.00 32.26 2.90
706 875 8.424133 TGCTTCATTTATTAGCTCATAGACTCA 58.576 33.333 0.00 0.00 35.93 3.41
707 876 8.824159 TGCTTCATTTATTAGCTCATAGACTC 57.176 34.615 0.00 0.00 35.93 3.36
708 877 9.790344 ATTGCTTCATTTATTAGCTCATAGACT 57.210 29.630 0.00 0.00 35.93 3.24
714 883 9.783081 TCATAGATTGCTTCATTTATTAGCTCA 57.217 29.630 0.00 0.00 35.93 4.26
716 885 9.565090 TGTCATAGATTGCTTCATTTATTAGCT 57.435 29.630 0.00 0.00 35.93 3.32
717 886 9.604626 GTGTCATAGATTGCTTCATTTATTAGC 57.395 33.333 0.00 0.00 35.50 3.09
723 892 9.319143 GTAGTAGTGTCATAGATTGCTTCATTT 57.681 33.333 0.00 0.00 0.00 2.32
724 893 8.700051 AGTAGTAGTGTCATAGATTGCTTCATT 58.300 33.333 0.00 0.00 0.00 2.57
725 894 8.243961 AGTAGTAGTGTCATAGATTGCTTCAT 57.756 34.615 0.00 0.00 0.00 2.57
726 895 7.646548 AGTAGTAGTGTCATAGATTGCTTCA 57.353 36.000 0.00 0.00 0.00 3.02
727 896 9.619316 CATAGTAGTAGTGTCATAGATTGCTTC 57.381 37.037 0.00 0.00 0.00 3.86
728 897 9.137459 ACATAGTAGTAGTGTCATAGATTGCTT 57.863 33.333 0.00 0.00 0.00 3.91
729 898 8.698973 ACATAGTAGTAGTGTCATAGATTGCT 57.301 34.615 0.00 0.00 0.00 3.91
737 906 8.528643 TGCAAAGTAACATAGTAGTAGTGTCAT 58.471 33.333 0.00 0.00 0.00 3.06
738 907 7.811236 GTGCAAAGTAACATAGTAGTAGTGTCA 59.189 37.037 0.00 0.00 0.00 3.58
739 908 8.027771 AGTGCAAAGTAACATAGTAGTAGTGTC 58.972 37.037 0.00 0.00 0.00 3.67
740 909 7.893658 AGTGCAAAGTAACATAGTAGTAGTGT 58.106 34.615 0.00 0.00 0.00 3.55
745 914 9.587772 CTTCATAGTGCAAAGTAACATAGTAGT 57.412 33.333 0.00 0.00 0.00 2.73
746 915 9.035607 CCTTCATAGTGCAAAGTAACATAGTAG 57.964 37.037 0.00 0.00 0.00 2.57
747 916 8.537016 ACCTTCATAGTGCAAAGTAACATAGTA 58.463 33.333 0.00 0.00 0.00 1.82
748 917 7.394816 ACCTTCATAGTGCAAAGTAACATAGT 58.605 34.615 0.00 0.00 0.00 2.12
749 918 7.849804 ACCTTCATAGTGCAAAGTAACATAG 57.150 36.000 0.00 0.00 0.00 2.23
750 919 8.537016 ACTACCTTCATAGTGCAAAGTAACATA 58.463 33.333 0.00 0.00 34.02 2.29
751 920 7.394816 ACTACCTTCATAGTGCAAAGTAACAT 58.605 34.615 0.00 0.00 34.02 2.71
752 921 6.765403 ACTACCTTCATAGTGCAAAGTAACA 58.235 36.000 0.00 0.00 34.02 2.41
753 922 8.654215 GTTACTACCTTCATAGTGCAAAGTAAC 58.346 37.037 0.00 0.00 39.37 2.50
754 923 8.591072 AGTTACTACCTTCATAGTGCAAAGTAA 58.409 33.333 0.00 0.00 36.09 2.24
755 924 8.130671 AGTTACTACCTTCATAGTGCAAAGTA 57.869 34.615 0.00 0.00 36.09 2.24
756 925 7.005709 AGTTACTACCTTCATAGTGCAAAGT 57.994 36.000 0.00 0.00 36.09 2.66
757 926 7.907214 AAGTTACTACCTTCATAGTGCAAAG 57.093 36.000 0.00 0.00 36.09 2.77
758 927 8.809066 TCTAAGTTACTACCTTCATAGTGCAAA 58.191 33.333 0.00 0.00 36.09 3.68
759 928 8.248945 GTCTAAGTTACTACCTTCATAGTGCAA 58.751 37.037 0.00 0.00 36.09 4.08
760 929 7.614583 AGTCTAAGTTACTACCTTCATAGTGCA 59.385 37.037 0.00 0.00 36.09 4.57
761 930 7.998580 AGTCTAAGTTACTACCTTCATAGTGC 58.001 38.462 0.00 0.00 36.09 4.40
766 935 9.176460 GACACTAGTCTAAGTTACTACCTTCAT 57.824 37.037 0.00 0.00 41.64 2.57
767 936 8.159447 TGACACTAGTCTAAGTTACTACCTTCA 58.841 37.037 0.00 0.00 45.20 3.02
768 937 8.558973 TGACACTAGTCTAAGTTACTACCTTC 57.441 38.462 0.00 0.00 45.20 3.46
772 941 9.881529 GCATATGACACTAGTCTAAGTTACTAC 57.118 37.037 6.97 0.00 45.20 2.73
773 942 9.623000 TGCATATGACACTAGTCTAAGTTACTA 57.377 33.333 6.97 0.00 45.20 1.82
774 943 8.521170 TGCATATGACACTAGTCTAAGTTACT 57.479 34.615 6.97 0.00 45.20 2.24
775 944 9.186323 CATGCATATGACACTAGTCTAAGTTAC 57.814 37.037 6.97 0.00 45.20 2.50
776 945 9.131791 TCATGCATATGACACTAGTCTAAGTTA 57.868 33.333 6.97 0.00 45.20 2.24
777 946 8.011844 TCATGCATATGACACTAGTCTAAGTT 57.988 34.615 6.97 0.00 45.20 2.66
778 947 7.588497 TCATGCATATGACACTAGTCTAAGT 57.412 36.000 6.97 0.00 45.20 2.24
791 960 7.839907 TGCATATACTAGTGTCATGCATATGA 58.160 34.615 24.99 11.28 43.55 2.15
797 966 5.349817 GGTCATGCATATACTAGTGTCATGC 59.650 44.000 21.82 21.82 41.37 4.06
798 967 6.458210 TGGTCATGCATATACTAGTGTCATG 58.542 40.000 5.39 9.24 34.33 3.07
799 968 6.670695 TGGTCATGCATATACTAGTGTCAT 57.329 37.500 5.39 0.00 0.00 3.06
800 969 5.509670 GCTGGTCATGCATATACTAGTGTCA 60.510 44.000 19.41 0.00 0.00 3.58
801 970 4.926238 GCTGGTCATGCATATACTAGTGTC 59.074 45.833 19.41 6.09 0.00 3.67
802 971 4.262635 GGCTGGTCATGCATATACTAGTGT 60.263 45.833 19.41 0.39 0.00 3.55
803 972 4.020751 AGGCTGGTCATGCATATACTAGTG 60.021 45.833 19.41 0.90 0.00 2.74
804 973 4.163427 AGGCTGGTCATGCATATACTAGT 58.837 43.478 19.41 0.00 0.00 2.57
805 974 4.815533 AGGCTGGTCATGCATATACTAG 57.184 45.455 16.10 16.10 0.00 2.57
806 975 6.016555 TCTAAGGCTGGTCATGCATATACTA 58.983 40.000 0.00 0.00 0.00 1.82
807 976 4.840680 TCTAAGGCTGGTCATGCATATACT 59.159 41.667 0.00 0.00 0.00 2.12
808 977 5.152623 TCTAAGGCTGGTCATGCATATAC 57.847 43.478 0.00 0.22 0.00 1.47
809 978 6.013466 TGAATCTAAGGCTGGTCATGCATATA 60.013 38.462 0.00 0.00 0.00 0.86
810 979 4.923516 ATCTAAGGCTGGTCATGCATAT 57.076 40.909 0.00 0.00 0.00 1.78
811 980 4.102996 TGAATCTAAGGCTGGTCATGCATA 59.897 41.667 0.00 0.00 0.00 3.14
812 981 3.117776 TGAATCTAAGGCTGGTCATGCAT 60.118 43.478 0.00 0.00 0.00 3.96
813 982 2.239402 TGAATCTAAGGCTGGTCATGCA 59.761 45.455 0.00 0.00 0.00 3.96
814 983 2.877168 CTGAATCTAAGGCTGGTCATGC 59.123 50.000 0.00 0.00 0.00 4.06
815 984 2.877168 GCTGAATCTAAGGCTGGTCATG 59.123 50.000 0.00 0.00 0.00 3.07
816 985 2.776536 AGCTGAATCTAAGGCTGGTCAT 59.223 45.455 0.00 0.00 33.50 3.06
817 986 2.191400 AGCTGAATCTAAGGCTGGTCA 58.809 47.619 0.00 0.00 33.50 4.02
818 987 2.998316 AGCTGAATCTAAGGCTGGTC 57.002 50.000 0.00 0.00 33.50 4.02
819 988 4.518249 GTTAAGCTGAATCTAAGGCTGGT 58.482 43.478 0.00 0.00 35.08 4.00
820 989 3.879892 GGTTAAGCTGAATCTAAGGCTGG 59.120 47.826 0.00 0.00 35.08 4.85
821 990 4.517285 TGGTTAAGCTGAATCTAAGGCTG 58.483 43.478 6.19 0.00 35.08 4.85
822 991 4.844349 TGGTTAAGCTGAATCTAAGGCT 57.156 40.909 6.19 0.00 36.53 4.58
823 992 5.590259 TGATTGGTTAAGCTGAATCTAAGGC 59.410 40.000 14.94 0.00 0.00 4.35
826 995 9.241919 TCAAATGATTGGTTAAGCTGAATCTAA 57.758 29.630 14.94 0.00 37.15 2.10
828 997 7.707624 TCAAATGATTGGTTAAGCTGAATCT 57.292 32.000 14.94 3.28 37.15 2.40
843 1012 4.943705 ACTACGGTCAGCAATCAAATGATT 59.056 37.500 2.83 2.83 44.93 2.57
847 1016 7.391148 AATTAACTACGGTCAGCAATCAAAT 57.609 32.000 0.00 0.00 0.00 2.32
850 1019 4.565166 CGAATTAACTACGGTCAGCAATCA 59.435 41.667 0.00 0.00 0.00 2.57
852 1021 3.869246 CCGAATTAACTACGGTCAGCAAT 59.131 43.478 0.00 0.00 41.47 3.56
853 1022 3.056678 TCCGAATTAACTACGGTCAGCAA 60.057 43.478 13.70 0.00 45.71 3.91
888 1059 1.976474 GGCGATGGTGGCAAAAGGA 60.976 57.895 0.00 0.00 0.00 3.36
893 1064 1.765904 TCTTATAGGCGATGGTGGCAA 59.234 47.619 0.00 0.00 36.77 4.52
899 1070 2.900546 AGAGGGTTCTTATAGGCGATGG 59.099 50.000 0.00 0.00 0.00 3.51
912 1083 2.414806 GTTCGAGGTTTCAGAGGGTTC 58.585 52.381 0.00 0.00 0.00 3.62
915 1086 0.685097 TGGTTCGAGGTTTCAGAGGG 59.315 55.000 0.00 0.00 0.00 4.30
929 1100 3.374745 CTGATTTTGCTGTGTGTGGTTC 58.625 45.455 0.00 0.00 0.00 3.62
934 1105 2.624364 TGATGCTGATTTTGCTGTGTGT 59.376 40.909 0.00 0.00 0.00 3.72
935 1106 2.984471 GTGATGCTGATTTTGCTGTGTG 59.016 45.455 0.00 0.00 0.00 3.82
941 1112 2.288948 TGGTTGGTGATGCTGATTTTGC 60.289 45.455 0.00 0.00 0.00 3.68
991 1162 1.401552 CACATCGGCCATTGTTGGTAG 59.598 52.381 2.24 0.00 45.57 3.18
1065 1239 4.443266 GCGACGCCCTTCTCTGCT 62.443 66.667 9.14 0.00 0.00 4.24
1080 1254 0.248134 GCTCACTGTACTCGTAGGCG 60.248 60.000 0.00 0.00 39.92 5.52
1086 1260 1.542030 AGGTTCTGCTCACTGTACTCG 59.458 52.381 0.00 0.00 0.00 4.18
1110 1284 0.320596 GCAGCAGCTCACTCTTCTGT 60.321 55.000 0.00 0.00 37.91 3.41
1128 1302 1.153349 GACGGGGTTGGATCTCAGC 60.153 63.158 0.00 0.00 0.00 4.26
1182 1356 0.823769 TGAGTGACTCGCAGACAGGT 60.824 55.000 8.23 0.00 32.35 4.00
1194 1368 3.382865 TGTAGCTGAGGATGATGAGTGAC 59.617 47.826 0.00 0.00 0.00 3.67
1197 1371 3.255395 CGATGTAGCTGAGGATGATGAGT 59.745 47.826 0.00 0.00 0.00 3.41
1211 1385 0.525668 CCACACCTCGTCGATGTAGC 60.526 60.000 4.21 0.00 0.00 3.58
1281 1455 1.448013 GTAGTCAGCCCAGAACCGC 60.448 63.158 0.00 0.00 0.00 5.68
1317 1491 7.692705 GTCTTAATAAAGCGAAGTTCCATTGTC 59.307 37.037 0.00 0.00 32.36 3.18
1328 1502 5.720202 TCTCTGCTGTCTTAATAAAGCGAA 58.280 37.500 0.00 0.00 38.53 4.70
1345 1519 1.888512 TGGCTTTGTTCCATTCTCTGC 59.111 47.619 0.00 0.00 0.00 4.26
1354 1528 2.125952 GCGGCATGGCTTTGTTCC 60.126 61.111 18.09 0.00 0.00 3.62
1362 1536 1.610522 AGATAAATGAAGCGGCATGGC 59.389 47.619 9.69 9.69 0.00 4.40
1469 1712 3.382546 AGTTTATGTGCTGGATTCATGGC 59.617 43.478 0.00 0.00 0.00 4.40
1484 1727 7.305474 CACCCTTGTGTTAAGCTAAGTTTATG 58.695 38.462 0.00 0.00 37.72 1.90
1485 1728 6.072119 GCACCCTTGTGTTAAGCTAAGTTTAT 60.072 38.462 0.00 0.00 44.65 1.40
1524 1767 1.833630 AGTCCTGCATCCTTTCATCGA 59.166 47.619 0.00 0.00 0.00 3.59
1529 1772 4.336713 GGAATGTTAGTCCTGCATCCTTTC 59.663 45.833 0.00 0.00 31.94 2.62
1646 1889 1.599576 GGACTCCAGGGTCTTGAGC 59.400 63.158 0.00 0.00 36.55 4.26
1664 1907 1.025812 AGTCCTTATCACCGAGCTCG 58.974 55.000 29.06 29.06 39.44 5.03
1693 1936 1.871039 CCACAAAACCGAACGTCTCAT 59.129 47.619 0.00 0.00 0.00 2.90
1698 1941 1.600485 GATGTCCACAAAACCGAACGT 59.400 47.619 0.00 0.00 0.00 3.99
1706 1949 2.281517 ACGAACGTGATGTCCACAAAA 58.718 42.857 0.00 0.00 45.98 2.44
1719 1962 0.531311 GGGGTCAAAGTCACGAACGT 60.531 55.000 0.00 0.00 0.00 3.99
1793 2036 2.908015 GCCCAGGCCACGATCTTA 59.092 61.111 5.01 0.00 34.56 2.10
1829 2072 2.743928 GCCTTGGCCACACTCTCG 60.744 66.667 3.88 0.00 0.00 4.04
1835 2078 0.537143 CAGTAAGTGCCTTGGCCACA 60.537 55.000 3.88 0.00 35.69 4.17
1913 2156 6.874278 TGCATGCCTACATAGATAACCTAT 57.126 37.500 16.68 0.00 38.59 2.57
1956 2199 1.322442 GGGAGATAAATGCCACAGCC 58.678 55.000 0.00 0.00 38.69 4.85
1977 2220 3.399330 AGTGACAAAGGGAACACATACG 58.601 45.455 0.00 0.00 35.97 3.06
2025 2289 6.070653 ACCCCTTTCGTTCAATATAGTGTGTA 60.071 38.462 0.00 0.00 0.00 2.90
2126 2390 5.048782 GCATGTCTGAGTGTTGTAATCCAAA 60.049 40.000 0.00 0.00 34.07 3.28
2143 2407 0.257039 GTCCCCTCATTGGCATGTCT 59.743 55.000 0.00 0.00 0.00 3.41
2184 2449 3.788163 GGTCGAAGAACCGTAAAGATACG 59.212 47.826 1.59 1.59 46.91 3.06
2372 2637 6.541641 GTCAGGCACTCATTCTCTGATTTAAT 59.458 38.462 0.00 0.00 34.60 1.40
2374 2639 5.046376 TGTCAGGCACTCATTCTCTGATTTA 60.046 40.000 0.00 0.00 34.60 1.40
2423 2688 1.376037 GAACTTCTGGACTGCCCGG 60.376 63.158 0.00 0.00 42.96 5.73
2618 2885 7.906611 TTCATGTTTCATAAAGTTTGACACG 57.093 32.000 0.00 0.00 0.00 4.49
2653 2920 8.017373 CCCTTCGTCATAAATATAGCACATTTG 58.983 37.037 0.00 0.00 0.00 2.32
2710 2978 9.868277 TTAGTTGATTTTGACAATGACAACTTT 57.132 25.926 24.80 13.71 41.95 2.66
2789 3059 3.569200 GAGGTCCCAACAGCCCACC 62.569 68.421 0.00 0.00 0.00 4.61


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.