Multiple sequence alignment - TraesCS2B01G607500

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G607500 chr2B 100.000 6935 0 0 1 6935 788014789 788021723 0.000000e+00 12807
1 TraesCS2B01G607500 chr2B 87.271 1964 201 29 4707 6642 788029823 788031765 0.000000e+00 2196
2 TraesCS2B01G607500 chr2B 87.541 1220 140 7 3352 4569 788028634 788029843 0.000000e+00 1400
3 TraesCS2B01G607500 chr2B 85.330 1152 148 14 3422 4568 787869781 787868646 0.000000e+00 1171
4 TraesCS2B01G607500 chr2B 78.693 1178 157 50 547 1676 788026494 788027625 0.000000e+00 699
5 TraesCS2B01G607500 chr2B 82.371 658 85 20 934 1575 794101905 794102547 1.700000e-150 544
6 TraesCS2B01G607500 chr2B 82.371 658 85 20 934 1575 794110505 794111147 1.700000e-150 544
7 TraesCS2B01G607500 chr2B 85.185 324 44 3 4741 5063 787860918 787860598 5.190000e-86 329
8 TraesCS2B01G607500 chr2B 73.684 570 119 20 2665 3220 788028023 788028575 7.100000e-45 193
9 TraesCS2B01G607500 chr2B 74.901 506 83 17 1875 2359 788016612 788017094 2.550000e-44 191
10 TraesCS2B01G607500 chr2B 74.901 506 83 17 1824 2306 788016663 788017147 2.550000e-44 191
11 TraesCS2B01G607500 chr2B 100.000 81 0 0 6855 6935 788021699 788021779 4.330000e-32 150
12 TraesCS2B01G607500 chr2B 100.000 81 0 0 6855 6935 788021755 788021835 4.330000e-32 150
13 TraesCS2B01G607500 chr2B 100.000 58 0 0 6855 6912 788021811 788021868 2.650000e-19 108
14 TraesCS2B01G607500 chr2A 94.749 6818 267 35 114 6909 772736646 772743394 0.000000e+00 10523
15 TraesCS2B01G607500 chr2A 87.453 1602 165 20 5061 6642 772688751 772690336 0.000000e+00 1812
16 TraesCS2B01G607500 chr2A 81.944 2099 295 42 2983 5066 772686700 772688729 0.000000e+00 1700
17 TraesCS2B01G607500 chr2A 87.229 1198 115 20 545 1732 772685165 772686334 0.000000e+00 1330
18 TraesCS2B01G607500 chr2A 83.721 387 44 10 4 382 772684500 772684875 1.430000e-91 348
19 TraesCS2B01G607500 chr2A 90.000 130 13 0 397 526 772684862 772684991 1.200000e-37 169
20 TraesCS2B01G607500 chr2A 77.985 268 41 6 1824 2091 772738392 772738641 1.200000e-32 152
21 TraesCS2B01G607500 chr2D 82.946 2539 358 37 3136 5638 647805573 647803074 0.000000e+00 2220
22 TraesCS2B01G607500 chr2D 88.752 1627 124 29 120 1725 647807783 647806195 0.000000e+00 1936
23 TraesCS2B01G607500 chr2D 79.772 1933 306 46 2670 4570 636066608 636068487 0.000000e+00 1325
24 TraesCS2B01G607500 chr2D 85.230 738 77 15 5878 6599 647802918 647802197 0.000000e+00 730
25 TraesCS2B01G607500 chr2D 78.729 1180 155 50 544 1676 636064658 636065788 0.000000e+00 701
26 TraesCS2B01G607500 chr2D 83.804 673 98 5 4684 5346 636068532 636069203 4.570000e-176 628
27 TraesCS2B01G607500 chr2D 75.029 877 187 21 3646 4500 528323206 528324072 1.830000e-100 377
28 TraesCS2B01G607500 chr2D 75.100 502 97 16 2670 3163 647806063 647805582 7.050000e-50 209
29 TraesCS2B01G607500 chr2D 74.766 321 41 21 6608 6912 647801797 647801501 2.650000e-19 108
30 TraesCS2B01G607500 chr3B 75.078 959 190 28 3646 4572 721039635 721040576 1.080000e-107 401
31 TraesCS2B01G607500 chr3B 74.118 935 198 31 3653 4558 721046787 721047706 5.150000e-91 346
32 TraesCS2B01G607500 chr3B 75.982 433 83 12 999 1416 721044069 721044495 3.280000e-48 204
33 TraesCS2B01G607500 chrUn 76.923 442 86 10 976 1404 91005206 91004768 3.230000e-58 237
34 TraesCS2B01G607500 chrUn 76.871 441 88 8 976 1404 91112402 91111964 3.230000e-58 237
35 TraesCS2B01G607500 chr3A 76.037 434 79 16 999 1416 681661494 681661918 1.180000e-47 202


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G607500 chr2B 788014789 788021723 6934 False 12807.000000 12807 100.000000 1 6935 1 chr2B.!!$F1 6934
1 TraesCS2B01G607500 chr2B 787868646 787869781 1135 True 1171.000000 1171 85.330000 3422 4568 1 chr2B.!!$R2 1146
2 TraesCS2B01G607500 chr2B 788026494 788031765 5271 False 1122.000000 2196 81.797250 547 6642 4 chr2B.!!$F6 6095
3 TraesCS2B01G607500 chr2B 794101905 794102547 642 False 544.000000 544 82.371000 934 1575 1 chr2B.!!$F2 641
4 TraesCS2B01G607500 chr2B 794110505 794111147 642 False 544.000000 544 82.371000 934 1575 1 chr2B.!!$F3 641
5 TraesCS2B01G607500 chr2A 772736646 772743394 6748 False 10523.000000 10523 94.749000 114 6909 1 chr2A.!!$F1 6795
6 TraesCS2B01G607500 chr2A 772684500 772690336 5836 False 1071.800000 1812 86.069400 4 6642 5 chr2A.!!$F3 6638
7 TraesCS2B01G607500 chr2D 647801501 647807783 6282 True 1040.600000 2220 81.358800 120 6912 5 chr2D.!!$R1 6792
8 TraesCS2B01G607500 chr2D 636064658 636069203 4545 False 884.666667 1325 80.768333 544 5346 3 chr2D.!!$F2 4802
9 TraesCS2B01G607500 chr2D 528323206 528324072 866 False 377.000000 377 75.029000 3646 4500 1 chr2D.!!$F1 854
10 TraesCS2B01G607500 chr3B 721039635 721047706 8071 False 317.000000 401 75.059333 999 4572 3 chr3B.!!$F1 3573

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
972 1226 0.179020 CACCATCACACACACCAGGT 60.179 55.000 0.00 0.00 0.00 4.00 F
1735 2036 1.161843 CGCCTTTGTGGTAACGGATT 58.838 50.000 0.00 0.00 42.51 3.01 F
2529 3071 0.806102 CCCTTGTGCACGGAGATACG 60.806 60.000 18.51 4.84 40.31 3.06 F
3245 3838 1.406069 CGCTGGCAATAGTCCTCTTGT 60.406 52.381 0.00 0.00 0.00 3.16 F
3344 3940 1.928868 AAATCTGCCAAGAACCCAGG 58.071 50.000 0.00 0.00 35.59 4.45 F
4103 4756 2.694829 GATACGCTCATCGCCCGGTT 62.695 60.000 0.00 0.00 43.23 4.44 F
5424 6161 2.354203 GGAGGAGCTCGAACTGAACAAT 60.354 50.000 7.83 0.00 0.00 2.71 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2045 2459 0.883814 GCTGGCATCCTTGATCTCCG 60.884 60.0 0.00 0.0 0.00 4.63 R
3197 3781 0.464452 GGTACTGATCGACCTTGGGG 59.536 60.0 0.00 0.0 38.88 4.96 R
4431 5107 0.400594 GCCTGGTAACACCTGTTCCT 59.599 55.0 0.00 0.0 46.17 3.36 R
5126 5863 0.896226 GGTACCAGTCAGAGTCACCC 59.104 60.0 7.15 0.0 0.00 4.61 R
5151 5888 3.731089 GATCTTCAGATCTTCCTGGCTG 58.269 50.0 9.25 0.0 45.60 4.85 R
5535 6272 0.947180 GGTAGCGCACCTTTCGTTCA 60.947 55.0 11.47 0.0 44.79 3.18 R
6368 9583 0.384725 CTGCACAAAACTCCGCTTCG 60.385 55.0 0.00 0.0 0.00 3.79 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 2.954611 GCCTCCAAACGACCAAGC 59.045 61.111 0.00 0.00 0.00 4.01
21 22 1.593196 CTCCAAACGACCAAGCTTCA 58.407 50.000 0.00 0.00 0.00 3.02
30 31 4.549458 ACGACCAAGCTTCAAATGAAATG 58.451 39.130 0.00 0.00 33.07 2.32
35 36 6.585416 ACCAAGCTTCAAATGAAATGAAAGT 58.415 32.000 0.00 0.00 36.43 2.66
38 39 7.115947 CCAAGCTTCAAATGAAATGAAAGTCTC 59.884 37.037 0.00 0.00 36.43 3.36
42 43 7.496529 TTCAAATGAAATGAAAGTCTCGAGT 57.503 32.000 13.13 0.00 34.04 4.18
44 45 7.355017 TCAAATGAAATGAAAGTCTCGAGTTG 58.645 34.615 13.13 4.43 0.00 3.16
64 65 2.292292 TGTCGAGAACTTCATCACACGA 59.708 45.455 0.00 0.00 0.00 4.35
67 68 4.208460 GTCGAGAACTTCATCACACGAAAA 59.792 41.667 0.00 0.00 0.00 2.29
72 73 3.804036 ACTTCATCACACGAAAAGGACA 58.196 40.909 0.00 0.00 0.00 4.02
75 76 5.995282 ACTTCATCACACGAAAAGGACAATA 59.005 36.000 0.00 0.00 0.00 1.90
76 77 6.655003 ACTTCATCACACGAAAAGGACAATAT 59.345 34.615 0.00 0.00 0.00 1.28
77 78 7.822334 ACTTCATCACACGAAAAGGACAATATA 59.178 33.333 0.00 0.00 0.00 0.86
78 79 8.731275 TTCATCACACGAAAAGGACAATATAT 57.269 30.769 0.00 0.00 0.00 0.86
79 80 9.825109 TTCATCACACGAAAAGGACAATATATA 57.175 29.630 0.00 0.00 0.00 0.86
98 99 4.650972 ATAGCAAAACTGTAACAGGGGA 57.349 40.909 0.00 0.00 35.51 4.81
105 106 1.825474 ACTGTAACAGGGGACGATGAG 59.175 52.381 0.00 0.00 35.51 2.90
162 163 5.869888 AGATGACACGAGAACTTACCAATTC 59.130 40.000 0.00 0.00 0.00 2.17
165 166 3.746492 ACACGAGAACTTACCAATTCTGC 59.254 43.478 0.00 0.00 35.29 4.26
206 207 5.390991 GGGTTCTTTTCTAACTTCATCAGCG 60.391 44.000 0.00 0.00 0.00 5.18
207 208 5.408604 GGTTCTTTTCTAACTTCATCAGCGA 59.591 40.000 0.00 0.00 0.00 4.93
208 209 6.092807 GGTTCTTTTCTAACTTCATCAGCGAT 59.907 38.462 0.00 0.00 0.00 4.58
209 210 7.361286 GGTTCTTTTCTAACTTCATCAGCGATT 60.361 37.037 0.00 0.00 0.00 3.34
210 211 7.295952 TCTTTTCTAACTTCATCAGCGATTC 57.704 36.000 0.00 0.00 0.00 2.52
211 212 6.873605 TCTTTTCTAACTTCATCAGCGATTCA 59.126 34.615 0.00 0.00 0.00 2.57
212 213 6.653273 TTTCTAACTTCATCAGCGATTCAG 57.347 37.500 0.00 0.00 0.00 3.02
213 214 4.115516 TCTAACTTCATCAGCGATTCAGC 58.884 43.478 0.00 0.00 37.41 4.26
229 230 3.641437 TCAGCACAATTTAACTGTGGC 57.359 42.857 8.60 1.44 43.61 5.01
238 253 2.489938 TTAACTGTGGCCCATCTCAC 57.510 50.000 0.00 0.00 34.71 3.51
335 350 4.012374 CTGCTTGGAGGAGCTAATTTTCA 58.988 43.478 0.00 0.00 43.11 2.69
411 453 5.939296 CGCGGGGATAATAAAAATACCCTTA 59.061 40.000 0.00 0.00 44.51 2.69
418 460 8.573885 GGATAATAAAAATACCCTTACCTGCAC 58.426 37.037 0.00 0.00 0.00 4.57
479 521 0.610232 ACTCCATCCTGCTTGCAACC 60.610 55.000 0.00 0.00 0.00 3.77
486 528 2.722094 TCCTGCTTGCAACCGATTTAT 58.278 42.857 0.00 0.00 0.00 1.40
489 531 4.335315 TCCTGCTTGCAACCGATTTATAAG 59.665 41.667 0.00 0.00 0.00 1.73
526 568 2.193447 CGTGTAATGTCATCCCGTCTG 58.807 52.381 0.00 0.00 0.00 3.51
539 581 0.377554 CCGTCTGCTACACTACTCCG 59.622 60.000 0.00 0.00 0.00 4.63
573 770 7.244166 AGATGAAATGAGAAATCGTGATGAC 57.756 36.000 0.00 0.00 0.00 3.06
595 792 3.826754 CTGCATGCAGCCTGCTGG 61.827 66.667 33.18 9.86 45.31 4.85
614 815 5.157067 GCTGGAAAGTAAAGAAATGACAGC 58.843 41.667 0.00 0.00 40.40 4.40
656 860 2.149973 AATGGGTTGATGCTCTTCCC 57.850 50.000 0.00 0.00 38.68 3.97
660 864 0.620556 GGTTGATGCTCTTCCCCTGA 59.379 55.000 0.00 0.00 0.00 3.86
676 891 4.849810 TCCCCTGAAAGAGTAGGAAAATCA 59.150 41.667 0.00 0.00 36.11 2.57
839 1083 2.253758 GCTCACGGCACACACACAT 61.254 57.895 0.00 0.00 41.35 3.21
898 1145 1.425066 ACACCCCACAGACACATGAAT 59.575 47.619 0.00 0.00 0.00 2.57
937 1191 0.322906 GGCCTGCTTCTGCTAAACCT 60.323 55.000 0.00 0.00 40.48 3.50
972 1226 0.179020 CACCATCACACACACCAGGT 60.179 55.000 0.00 0.00 0.00 4.00
1140 1411 1.302832 CAGCTTCCTGGCGAACCTT 60.303 57.895 0.00 0.00 35.38 3.50
1410 1681 2.483876 CGCCGAATGAGATATGGTGTT 58.516 47.619 0.00 0.00 0.00 3.32
1735 2036 1.161843 CGCCTTTGTGGTAACGGATT 58.838 50.000 0.00 0.00 42.51 3.01
1788 2089 1.624391 GGGAGTAAAGCCCTGGAGGTA 60.624 57.143 0.00 0.00 42.56 3.08
1868 2172 3.211963 GCATGCGGGTGCCCTTAG 61.212 66.667 0.00 0.00 41.78 2.18
1972 2333 3.842925 AATGTCGGTGGCCTTGCGT 62.843 57.895 3.32 0.00 0.00 5.24
2016 2430 4.740822 ACCAAGGATGCCGGTGCC 62.741 66.667 1.90 1.76 36.33 5.01
2030 2444 2.594303 TGCCCTTGCGTGTGAAGG 60.594 61.111 0.00 0.00 41.78 3.46
2067 2481 1.895707 GATCAAGGATGCCAGCCCG 60.896 63.158 0.00 0.00 0.00 6.13
2100 2514 1.530183 GATCAAGGATGCCAGCCCC 60.530 63.158 0.00 0.00 0.00 5.80
2179 2596 1.301244 CCGGAGATCAAGGATGCCG 60.301 63.158 0.00 0.00 36.79 5.69
2206 2623 1.236616 TGTGCATGAAGACAAGGCCG 61.237 55.000 0.00 0.00 32.15 6.13
2306 2723 4.133078 GCTCTTGTGGATGAAGATAAGGG 58.867 47.826 0.00 0.00 0.00 3.95
2364 2781 2.721129 GCACGAAGATAAGGCGAAAG 57.279 50.000 0.00 0.00 0.00 2.62
2397 2814 2.689553 TGTGCATGAAGATAAGGCGA 57.310 45.000 0.00 0.00 0.00 5.54
2452 2994 2.202932 CGGAGACCAAGGATGCCG 60.203 66.667 0.00 0.00 0.00 5.69
2469 3011 2.753966 CGGCGCCCTTGTGAATGAG 61.754 63.158 23.46 0.00 0.00 2.90
2529 3071 0.806102 CCCTTGTGCACGGAGATACG 60.806 60.000 18.51 4.84 40.31 3.06
2532 3074 2.161078 TTGTGCACGGAGATACGGCA 62.161 55.000 13.13 0.00 37.58 5.69
2583 3125 4.082571 GCTGTTGAACACAAAGATATGCCT 60.083 41.667 0.00 0.00 33.87 4.75
2898 3443 7.647907 AAATGACATCAAAATTTGCACTCTC 57.352 32.000 0.00 0.00 0.00 3.20
2899 3444 5.771153 TGACATCAAAATTTGCACTCTCA 57.229 34.783 0.00 0.00 0.00 3.27
2964 3509 6.555315 CAAGGACGGAATAGATTTGGAAAAG 58.445 40.000 0.00 0.00 0.00 2.27
3037 3585 6.131222 AGTCAACTACTACTGCTGCTGCAT 62.131 45.833 19.20 11.44 42.17 3.96
3038 3586 7.852192 AGTCAACTACTACTGCTGCTGCATC 62.852 48.000 19.20 0.00 42.17 3.91
3054 3602 4.201930 GCTGCATCAGAATCAGAAAAGGAG 60.202 45.833 0.00 0.00 32.44 3.69
3125 3673 4.386954 GCAAACAGCCAAGAAGCTTAAATC 59.613 41.667 0.00 0.00 42.61 2.17
3126 3674 5.531634 CAAACAGCCAAGAAGCTTAAATCA 58.468 37.500 0.00 0.00 42.61 2.57
3164 3748 2.901813 CTCAGAGCAGCTGGAGGG 59.098 66.667 17.12 0.00 44.98 4.30
3197 3781 1.429463 GACATCCTGTCAACGGTGTC 58.571 55.000 0.00 0.00 46.22 3.67
3245 3838 1.406069 CGCTGGCAATAGTCCTCTTGT 60.406 52.381 0.00 0.00 0.00 3.16
3297 3890 4.302559 AATGGTCAGAGGGGTTAAAGAC 57.697 45.455 0.00 0.00 0.00 3.01
3313 3906 2.680312 AGACATGCTGCACGAGTTAT 57.320 45.000 3.57 0.00 0.00 1.89
3344 3940 1.928868 AAATCTGCCAAGAACCCAGG 58.071 50.000 0.00 0.00 35.59 4.45
3597 4229 3.490759 GGTGCTGTGATCGTGGCG 61.491 66.667 0.00 0.00 0.00 5.69
3620 4252 3.117888 ACAAAGACCACTCAACAGGACAT 60.118 43.478 0.00 0.00 0.00 3.06
3632 4267 6.127814 ACTCAACAGGACATCAAGCAATATTG 60.128 38.462 11.27 11.27 0.00 1.90
4103 4756 2.694829 GATACGCTCATCGCCCGGTT 62.695 60.000 0.00 0.00 43.23 4.44
4431 5107 4.281657 TGCTCAAGTATCTCAGCCTAAGA 58.718 43.478 0.00 0.00 0.00 2.10
4596 5273 4.335647 AAGCGTGTCCTGGCTGGG 62.336 66.667 10.79 0.45 39.93 4.45
4624 5301 3.555139 CGATTCAAGTCAGAGCAATCCTC 59.445 47.826 0.00 0.00 41.07 3.71
5112 5849 7.896383 TCTTAAGATATTGGTTGGAAATGGG 57.104 36.000 0.00 0.00 0.00 4.00
5151 5888 2.756207 GACTCTGACTGGTACCTCCTTC 59.244 54.545 14.36 4.70 37.07 3.46
5424 6161 2.354203 GGAGGAGCTCGAACTGAACAAT 60.354 50.000 7.83 0.00 0.00 2.71
5433 6170 6.312426 AGCTCGAACTGAACAATATCAAGAAG 59.688 38.462 0.00 0.00 0.00 2.85
5535 6272 1.338136 ATCTGGAAATCCTCGCCCGT 61.338 55.000 0.44 0.00 36.82 5.28
5545 6282 2.356553 TCGCCCGTGAACGAAAGG 60.357 61.111 4.03 0.00 43.02 3.11
5634 6377 5.964958 TCCAAAAGCTCAACCTTCTTATG 57.035 39.130 0.00 0.00 0.00 1.90
5638 6381 4.640771 AAGCTCAACCTTCTTATGGTCA 57.359 40.909 0.00 0.00 36.69 4.02
5710 6462 3.181496 TGAGAAGATCGTCTGGTCATTCG 60.181 47.826 16.28 0.00 0.00 3.34
5733 6485 4.770795 AGAATATTGTTTCTCTGTCCGGG 58.229 43.478 0.00 0.00 29.99 5.73
5799 6554 4.836825 ACAGTGTCCCTAATGATGTTGAG 58.163 43.478 0.00 0.00 0.00 3.02
5802 6557 4.080129 AGTGTCCCTAATGATGTTGAGCAT 60.080 41.667 0.00 0.00 41.24 3.79
5898 6677 0.394762 GTCCTGCAAGATGCCCATCA 60.395 55.000 10.58 0.00 44.23 3.07
5952 6731 1.271163 TGAAGGCCTTCCCGTTACTTG 60.271 52.381 36.75 0.00 38.77 3.16
5960 6739 3.824443 CCTTCCCGTTACTTGTTCCATTT 59.176 43.478 0.00 0.00 0.00 2.32
6032 6811 4.319766 GCCATTGTGTGTTTCTGTCTACTG 60.320 45.833 0.00 0.00 0.00 2.74
6126 6931 2.488937 CTGCATGTGTGGCTTGTGATTA 59.511 45.455 0.00 0.00 0.00 1.75
6159 6964 4.579454 AATGGTTGTGCATATGCTCATC 57.421 40.909 27.70 25.35 42.97 2.92
6175 6980 3.678806 GCTCATCGGTCTGGATTTGTGTA 60.679 47.826 0.00 0.00 0.00 2.90
6200 7024 3.874383 TCCTCTGGACAAAATGGTTCA 57.126 42.857 0.00 0.00 0.00 3.18
6295 7126 3.611057 GCTTTGACTGAGTTCTGCAATGG 60.611 47.826 0.00 0.00 0.00 3.16
6314 7148 4.365514 TGGTGAACTGGTTGTATGTCAT 57.634 40.909 0.00 0.00 0.00 3.06
6315 7149 4.323417 TGGTGAACTGGTTGTATGTCATC 58.677 43.478 0.00 0.00 0.00 2.92
6316 7150 4.202409 TGGTGAACTGGTTGTATGTCATCA 60.202 41.667 0.00 0.00 0.00 3.07
6317 7151 4.759693 GGTGAACTGGTTGTATGTCATCAA 59.240 41.667 0.00 0.00 0.00 2.57
6368 9583 3.070302 AGCAGCAGTTAAGTATAGCCCTC 59.930 47.826 0.00 0.00 0.00 4.30
6382 9602 1.912371 GCCCTCGAAGCGGAGTTTTG 61.912 60.000 0.00 0.00 31.34 2.44
6423 9643 4.674281 GGATATTTGTCCGTCTTCTCCT 57.326 45.455 0.00 0.00 0.00 3.69
6443 9663 4.337555 TCCTTAGCTAGTGCGGTAGTTAAG 59.662 45.833 15.96 15.96 45.42 1.85
6484 9707 5.814188 GCAAGTCATCACTGATCTAATGACA 59.186 40.000 21.37 0.00 46.64 3.58
6485 9708 6.314648 GCAAGTCATCACTGATCTAATGACAA 59.685 38.462 21.37 4.46 46.64 3.18
6486 9709 7.148356 GCAAGTCATCACTGATCTAATGACAAA 60.148 37.037 21.37 2.75 46.64 2.83
6487 9710 7.840342 AGTCATCACTGATCTAATGACAAAC 57.160 36.000 21.37 10.81 46.64 2.93
6488 9711 7.389232 AGTCATCACTGATCTAATGACAAACA 58.611 34.615 21.37 0.00 46.64 2.83
6554 9782 9.930693 AAGTTTCATAGACTAAGTTTCAGTAGG 57.069 33.333 0.00 0.00 0.00 3.18
6617 10236 1.421410 CCTATGTTCAGTGCGCGGAC 61.421 60.000 24.26 24.26 0.00 4.79
6671 10290 2.496470 GTTACTGCAGCAGTACCTACCT 59.504 50.000 31.15 8.81 45.13 3.08
6674 10293 1.065701 CTGCAGCAGTACCTACCTACG 59.934 57.143 14.90 0.00 0.00 3.51
6686 10640 5.864418 ACCTACCTACGCATTCAGAATTA 57.136 39.130 0.00 0.00 0.00 1.40
6724 10689 8.286191 AGGCTATTTTTGTTAGATCTTCTTGG 57.714 34.615 0.00 0.00 0.00 3.61
6725 10690 7.340487 AGGCTATTTTTGTTAGATCTTCTTGGG 59.660 37.037 0.00 0.00 0.00 4.12
6727 10692 8.401709 GCTATTTTTGTTAGATCTTCTTGGGAG 58.598 37.037 0.00 0.00 0.00 4.30
6728 10693 7.709149 ATTTTTGTTAGATCTTCTTGGGAGG 57.291 36.000 0.00 0.00 0.00 4.30
6780 10753 7.332182 CCTCTAATCTCAGAAATTATTACGGCC 59.668 40.741 0.00 0.00 0.00 6.13
6786 10759 4.515191 TCAGAAATTATTACGGCCAGCATC 59.485 41.667 2.24 0.00 0.00 3.91
6797 10770 0.668401 GCCAGCATCAAAAGTGCCAC 60.668 55.000 0.00 0.00 43.50 5.01
6800 10773 1.067364 CAGCATCAAAAGTGCCACACA 59.933 47.619 0.00 0.00 43.50 3.72
6812 10785 2.095059 GTGCCACACATCCAGATTTCAC 60.095 50.000 0.00 0.00 34.08 3.18
6817 10790 4.279169 CCACACATCCAGATTTCACTTTGT 59.721 41.667 0.00 0.00 0.00 2.83
6819 10792 6.275335 CACACATCCAGATTTCACTTTGTTT 58.725 36.000 0.00 0.00 0.00 2.83
6820 10793 6.757947 CACACATCCAGATTTCACTTTGTTTT 59.242 34.615 0.00 0.00 0.00 2.43
6821 10794 7.920151 CACACATCCAGATTTCACTTTGTTTTA 59.080 33.333 0.00 0.00 0.00 1.52
6822 10795 7.920682 ACACATCCAGATTTCACTTTGTTTTAC 59.079 33.333 0.00 0.00 0.00 2.01
6823 10796 8.137437 CACATCCAGATTTCACTTTGTTTTACT 58.863 33.333 0.00 0.00 0.00 2.24
6824 10797 8.137437 ACATCCAGATTTCACTTTGTTTTACTG 58.863 33.333 0.00 0.00 0.00 2.74
6836 13255 9.503427 CACTTTGTTTTACTGTTTTAGAGAAGG 57.497 33.333 0.00 0.00 0.00 3.46
6909 13328 6.068670 AGGAACAAGGCTACATTTACTTTGT 58.931 36.000 0.00 0.00 0.00 2.83
6912 13331 8.520351 GGAACAAGGCTACATTTACTTTGTAAT 58.480 33.333 0.00 0.00 0.00 1.89
6913 13332 9.341899 GAACAAGGCTACATTTACTTTGTAATG 57.658 33.333 0.00 0.00 37.67 1.90
6914 13333 7.826690 ACAAGGCTACATTTACTTTGTAATGG 58.173 34.615 0.00 0.00 36.34 3.16
6915 13334 7.668052 ACAAGGCTACATTTACTTTGTAATGGA 59.332 33.333 0.00 0.00 36.34 3.41
6916 13335 8.519526 CAAGGCTACATTTACTTTGTAATGGAA 58.480 33.333 0.00 0.00 36.34 3.53
6917 13336 8.644374 AGGCTACATTTACTTTGTAATGGAAA 57.356 30.769 0.00 0.00 36.34 3.13
6918 13337 9.255029 AGGCTACATTTACTTTGTAATGGAAAT 57.745 29.630 0.00 0.00 36.34 2.17
6919 13338 9.869757 GGCTACATTTACTTTGTAATGGAAATT 57.130 29.630 0.00 0.00 36.34 1.82
6926 13345 6.544038 ACTTTGTAATGGAAATTTTGCTGC 57.456 33.333 2.25 0.00 0.00 5.25
6927 13346 6.290605 ACTTTGTAATGGAAATTTTGCTGCT 58.709 32.000 0.00 0.00 0.00 4.24
6928 13347 6.203338 ACTTTGTAATGGAAATTTTGCTGCTG 59.797 34.615 0.00 0.00 0.00 4.41
6929 13348 5.465532 TGTAATGGAAATTTTGCTGCTGA 57.534 34.783 0.00 0.00 0.00 4.26
6930 13349 5.851720 TGTAATGGAAATTTTGCTGCTGAA 58.148 33.333 0.00 0.00 0.00 3.02
6931 13350 6.465948 TGTAATGGAAATTTTGCTGCTGAAT 58.534 32.000 0.00 0.00 0.00 2.57
6932 13351 6.591062 TGTAATGGAAATTTTGCTGCTGAATC 59.409 34.615 0.00 0.00 0.00 2.52
6933 13352 4.877378 TGGAAATTTTGCTGCTGAATCT 57.123 36.364 0.00 0.00 0.00 2.40
6934 13353 4.813027 TGGAAATTTTGCTGCTGAATCTC 58.187 39.130 0.00 0.00 0.00 2.75
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
2 3 1.593196 TGAAGCTTGGTCGTTTGGAG 58.407 50.000 2.10 0.00 0.00 3.86
17 18 7.579726 ACTCGAGACTTTCATTTCATTTGAAG 58.420 34.615 21.68 0.00 34.76 3.02
21 22 7.264373 ACAACTCGAGACTTTCATTTCATTT 57.736 32.000 21.68 0.00 0.00 2.32
38 39 3.362237 GTGATGAAGTTCTCGACAACTCG 59.638 47.826 6.54 0.00 41.65 4.18
42 43 3.049912 CGTGTGATGAAGTTCTCGACAA 58.950 45.455 4.17 0.00 0.00 3.18
44 45 2.929960 TCGTGTGATGAAGTTCTCGAC 58.070 47.619 4.17 0.00 0.00 4.20
49 50 4.272504 TGTCCTTTTCGTGTGATGAAGTTC 59.727 41.667 0.00 0.00 0.00 3.01
52 53 4.811555 TTGTCCTTTTCGTGTGATGAAG 57.188 40.909 0.00 0.00 0.00 3.02
67 68 9.899661 TGTTACAGTTTTGCTATATATTGTCCT 57.100 29.630 0.00 0.00 0.00 3.85
72 73 8.499406 TCCCCTGTTACAGTTTTGCTATATATT 58.501 33.333 11.68 0.00 0.00 1.28
75 76 6.120220 GTCCCCTGTTACAGTTTTGCTATAT 58.880 40.000 11.68 0.00 0.00 0.86
76 77 5.493809 GTCCCCTGTTACAGTTTTGCTATA 58.506 41.667 11.68 0.00 0.00 1.31
77 78 4.332828 GTCCCCTGTTACAGTTTTGCTAT 58.667 43.478 11.68 0.00 0.00 2.97
78 79 3.746940 GTCCCCTGTTACAGTTTTGCTA 58.253 45.455 11.68 0.00 0.00 3.49
79 80 2.583143 GTCCCCTGTTACAGTTTTGCT 58.417 47.619 11.68 0.00 0.00 3.91
95 96 7.730364 ATGTAATTAATTGACTCATCGTCCC 57.270 36.000 11.05 0.00 42.13 4.46
115 116 6.672218 TCTTTGGTCTTCTGGAAGGATATGTA 59.328 38.462 10.01 0.00 38.88 2.29
118 119 6.388100 TCATCTTTGGTCTTCTGGAAGGATAT 59.612 38.462 10.01 0.00 38.88 1.63
165 166 2.440409 ACCCATAGTTCTGCAAGCAAG 58.560 47.619 0.00 0.00 0.00 4.01
206 207 4.622740 GCCACAGTTAAATTGTGCTGAATC 59.377 41.667 13.32 0.00 43.50 2.52
207 208 4.559153 GCCACAGTTAAATTGTGCTGAAT 58.441 39.130 13.32 0.00 43.50 2.57
208 209 3.243704 GGCCACAGTTAAATTGTGCTGAA 60.244 43.478 13.32 0.00 43.50 3.02
209 210 2.295909 GGCCACAGTTAAATTGTGCTGA 59.704 45.455 13.32 0.00 43.50 4.26
210 211 2.610232 GGGCCACAGTTAAATTGTGCTG 60.610 50.000 4.39 2.29 43.50 4.41
211 212 1.618343 GGGCCACAGTTAAATTGTGCT 59.382 47.619 4.39 0.00 43.50 4.40
212 213 1.342819 TGGGCCACAGTTAAATTGTGC 59.657 47.619 0.00 9.84 43.50 4.57
213 214 3.511146 AGATGGGCCACAGTTAAATTGTG 59.489 43.478 9.28 12.27 44.25 3.33
229 230 3.128242 GCAGAAGATGTTTGTGAGATGGG 59.872 47.826 0.00 0.00 0.00 4.00
238 253 2.242043 ACCCCTTGCAGAAGATGTTTG 58.758 47.619 0.00 0.00 0.00 2.93
267 282 6.261603 GTGCTACCACTACCAAAGTAAAAGTT 59.738 38.462 0.00 0.00 38.93 2.66
268 283 5.761726 GTGCTACCACTACCAAAGTAAAAGT 59.238 40.000 0.00 0.00 38.93 2.66
324 339 9.343539 GGGTGAGATATACTTTGAAAATTAGCT 57.656 33.333 0.00 0.00 0.00 3.32
325 340 8.283291 CGGGTGAGATATACTTTGAAAATTAGC 58.717 37.037 0.00 0.00 0.00 3.09
335 350 5.099042 AGCAAACGGGTGAGATATACTTT 57.901 39.130 0.00 0.00 0.00 2.66
387 429 4.329392 AGGGTATTTTTATTATCCCCGCG 58.671 43.478 0.00 0.00 35.75 6.46
390 432 7.177921 GCAGGTAAGGGTATTTTTATTATCCCC 59.822 40.741 0.00 0.00 35.90 4.81
411 453 6.876257 TGAATGTTTTGTTTTAAAGTGCAGGT 59.124 30.769 0.00 0.00 0.00 4.00
479 521 0.433492 CGCGCGGTCCTTATAAATCG 59.567 55.000 24.84 0.00 0.00 3.34
486 528 4.666397 TGCAACGCGCGGTCCTTA 62.666 61.111 35.22 10.43 46.97 2.69
526 568 2.806818 TGATCGATCGGAGTAGTGTAGC 59.193 50.000 20.03 0.00 0.00 3.58
539 581 9.596677 GATTTCTCATTTCATCTTTGATCGATC 57.403 33.333 18.72 18.72 0.00 3.69
573 770 2.203167 AGGCTGCATGCAGATCCG 60.203 61.111 44.02 23.64 46.30 4.18
595 792 8.856490 TTCTTTGCTGTCATTTCTTTACTTTC 57.144 30.769 0.00 0.00 0.00 2.62
614 815 9.034544 CATTACCCAACTTCTTCTTTTTCTTTG 57.965 33.333 0.00 0.00 0.00 2.77
656 860 4.631813 CCGTGATTTTCCTACTCTTTCAGG 59.368 45.833 0.00 0.00 0.00 3.86
660 864 4.565028 GGGACCGTGATTTTCCTACTCTTT 60.565 45.833 0.00 0.00 0.00 2.52
834 1078 3.192633 TGCACACGTCTATCTGTATGTGT 59.807 43.478 0.00 0.00 40.87 3.72
835 1079 3.769536 TGCACACGTCTATCTGTATGTG 58.230 45.455 0.00 0.00 40.29 3.21
839 1083 2.540973 GCGATGCACACGTCTATCTGTA 60.541 50.000 14.78 0.00 0.00 2.74
937 1191 6.375736 TGTGATGGTGTTTCAAGAGTTTGTTA 59.624 34.615 0.00 0.00 35.73 2.41
1086 1357 0.325933 CCTCCTGGATGAACTGCACA 59.674 55.000 0.00 0.00 34.57 4.57
1140 1411 3.589654 CTCGCGGCTGTTCCCAGAA 62.590 63.158 6.13 0.00 41.50 3.02
1410 1681 2.367241 TGATGACTCCGTTTTGACCTCA 59.633 45.455 0.00 0.00 0.00 3.86
1458 1744 2.279186 GGTGCCGGCAACAACAAC 60.279 61.111 39.02 20.73 33.07 3.32
1735 2036 2.173758 TTGGCGTTGGCATCCTCGTA 62.174 55.000 0.00 0.00 42.47 3.43
1788 2089 4.268359 CCTTCTCAAAATAGGCTCTTGCT 58.732 43.478 0.00 0.00 39.59 3.91
1868 2172 1.153429 ACCGCCTTATCTTCACGCC 60.153 57.895 0.00 0.00 0.00 5.68
1920 2224 2.308570 TGGCACACCCTTATCTTCATGT 59.691 45.455 0.00 0.00 33.59 3.21
2016 2430 1.156736 CCTTACCTTCACACGCAAGG 58.843 55.000 0.00 0.00 45.41 3.61
2045 2459 0.883814 GCTGGCATCCTTGATCTCCG 60.884 60.000 0.00 0.00 0.00 4.63
2167 2584 2.203070 GGCGTCGGCATCCTTGAT 60.203 61.111 14.73 0.00 42.47 2.57
2179 2596 0.955428 TCTTCATGCACAAGGGCGTC 60.955 55.000 7.27 0.00 36.28 5.19
2206 2623 1.450312 CCCTTGTCTCCGATGGCAC 60.450 63.158 0.00 0.00 0.00 5.01
2452 2994 2.409870 CCTCATTCACAAGGGCGCC 61.410 63.158 21.18 21.18 0.00 6.53
2469 3011 1.098050 CTTGTGGCACAGGCTTATCC 58.902 55.000 20.97 0.00 41.80 2.59
2532 3074 3.883744 CTTTGTCTCCGGCGGCACT 62.884 63.158 23.83 0.00 0.00 4.40
2563 3105 4.082571 AGCAGGCATATCTTTGTGTTCAAC 60.083 41.667 0.00 0.00 32.93 3.18
2898 3443 3.474600 CAGCTCCTTCATACCATCCTTG 58.525 50.000 0.00 0.00 0.00 3.61
2899 3444 2.158696 GCAGCTCCTTCATACCATCCTT 60.159 50.000 0.00 0.00 0.00 3.36
2964 3509 5.547465 CCCAAGTTTTTACCCAAGATTTCC 58.453 41.667 0.00 0.00 0.00 3.13
3037 3585 8.624776 GTTCTTTTTCTCCTTTTCTGATTCTGA 58.375 33.333 0.00 0.00 0.00 3.27
3038 3586 8.408601 TGTTCTTTTTCTCCTTTTCTGATTCTG 58.591 33.333 0.00 0.00 0.00 3.02
3039 3587 8.525290 TGTTCTTTTTCTCCTTTTCTGATTCT 57.475 30.769 0.00 0.00 0.00 2.40
3054 3602 6.454795 TGCTACCATGGATTTGTTCTTTTTC 58.545 36.000 21.47 0.00 0.00 2.29
3125 3673 3.762779 CTTGAGCCGCCTTCTATTTTTG 58.237 45.455 0.00 0.00 0.00 2.44
3126 3674 2.164422 GCTTGAGCCGCCTTCTATTTTT 59.836 45.455 0.00 0.00 34.31 1.94
3164 3748 2.039084 AGGATGTCTTCATATTCGGGCC 59.961 50.000 0.00 0.00 34.06 5.80
3197 3781 0.464452 GGTACTGATCGACCTTGGGG 59.536 60.000 0.00 0.00 38.88 4.96
3297 3890 0.659427 CCCATAACTCGTGCAGCATG 59.341 55.000 8.47 8.47 40.87 4.06
3313 3906 6.015918 TCTTGGCAGATTTTTCTAATTCCCA 58.984 36.000 0.00 0.00 0.00 4.37
3597 4229 2.872858 GTCCTGTTGAGTGGTCTTTGTC 59.127 50.000 0.00 0.00 0.00 3.18
3620 4252 3.419943 TGACAGCCACAATATTGCTTGA 58.580 40.909 15.48 0.00 31.77 3.02
3632 4267 0.673022 CTCCAGCTCTTGACAGCCAC 60.673 60.000 0.00 0.00 40.65 5.01
4072 4725 5.674148 CGATGAGCGTATCAAAACATTTCTG 59.326 40.000 4.51 0.00 42.53 3.02
4103 4756 1.032014 GCCAGCAGGACAAACAAAGA 58.968 50.000 0.00 0.00 36.89 2.52
4431 5107 0.400594 GCCTGGTAACACCTGTTCCT 59.599 55.000 0.00 0.00 46.17 3.36
4516 5193 2.135139 GACATGTCTTGTTGCAGACGA 58.865 47.619 18.83 0.00 45.53 4.20
4588 5265 1.442526 GAATCGACATGCCCAGCCAG 61.443 60.000 0.00 0.00 0.00 4.85
4596 5273 2.030213 GCTCTGACTTGAATCGACATGC 59.970 50.000 0.00 0.00 0.00 4.06
4624 5301 1.004918 GGACACTGGGGAAGTCACG 60.005 63.158 0.00 0.00 36.83 4.35
5112 5849 1.541588 GTCACCCTGGCAAGTTGATTC 59.458 52.381 7.16 0.00 0.00 2.52
5126 5863 0.896226 GGTACCAGTCAGAGTCACCC 59.104 60.000 7.15 0.00 0.00 4.61
5151 5888 3.731089 GATCTTCAGATCTTCCTGGCTG 58.269 50.000 9.25 0.00 45.60 4.85
5299 6036 6.183360 GCTCCATCATCAAATGTGATTTCAGA 60.183 38.462 0.00 0.00 42.03 3.27
5424 6161 5.693961 TGCAATATGCCCTTCTTCTTGATA 58.306 37.500 0.00 0.00 44.23 2.15
5433 6170 6.336842 AGTAATGAATGCAATATGCCCTTC 57.663 37.500 0.00 4.24 44.23 3.46
5535 6272 0.947180 GGTAGCGCACCTTTCGTTCA 60.947 55.000 11.47 0.00 44.79 3.18
5634 6377 2.159028 GGTGATGTAAGAGGAGCTGACC 60.159 54.545 0.00 0.00 0.00 4.02
5638 6381 2.028130 CTCGGTGATGTAAGAGGAGCT 58.972 52.381 0.00 0.00 0.00 4.09
5733 6485 2.417719 AGTGCAGGAAGTTTGTCGATC 58.582 47.619 0.00 0.00 0.00 3.69
5898 6677 2.094675 CAATCCTTCGCCTTCCACAAT 58.905 47.619 0.00 0.00 0.00 2.71
5952 6731 6.183360 TGGCAGGAATTGATGATAAATGGAAC 60.183 38.462 0.00 0.00 0.00 3.62
5960 6739 4.458256 ACCATGGCAGGAATTGATGATA 57.542 40.909 13.04 0.00 0.00 2.15
6006 6785 3.067180 AGACAGAAACACACAATGGCAAG 59.933 43.478 0.00 0.00 0.00 4.01
6032 6811 2.859806 GCAGAACACAAATGCACACTCC 60.860 50.000 0.00 0.00 39.75 3.85
6126 6931 3.119029 GCACAACCATTATGCTCAACCAT 60.119 43.478 0.00 0.00 36.40 3.55
6159 6964 2.386661 AGCTACACAAATCCAGACCG 57.613 50.000 0.00 0.00 0.00 4.79
6175 6980 3.160269 CCATTTTGTCCAGAGGAAAGCT 58.840 45.455 0.00 0.00 31.38 3.74
6200 7024 5.818136 ACAAGCATCGCACTTATTACATT 57.182 34.783 0.00 0.00 0.00 2.71
6295 7126 5.940192 TTGATGACATACAACCAGTTCAC 57.060 39.130 0.00 0.00 0.00 3.18
6337 9540 3.476386 ACTGCTGCTGGTAGCTGT 58.524 55.556 14.78 14.78 46.65 4.40
6368 9583 0.384725 CTGCACAAAACTCCGCTTCG 60.385 55.000 0.00 0.00 0.00 3.79
6382 9602 2.266554 CGAGAAACCTCTGATCTGCAC 58.733 52.381 0.00 0.00 29.54 4.57
6423 9643 3.181483 GGCTTAACTACCGCACTAGCTAA 60.181 47.826 0.00 0.00 39.10 3.09
6443 9663 1.806758 GCATGAAACCATGTGCGGC 60.807 57.895 0.00 0.00 42.51 6.53
6484 9707 6.040054 ACTTTACCGACCTTGCTATTTTGTTT 59.960 34.615 0.00 0.00 0.00 2.83
6485 9708 5.533528 ACTTTACCGACCTTGCTATTTTGTT 59.466 36.000 0.00 0.00 0.00 2.83
6486 9709 5.067954 ACTTTACCGACCTTGCTATTTTGT 58.932 37.500 0.00 0.00 0.00 2.83
6487 9710 5.180492 TGACTTTACCGACCTTGCTATTTTG 59.820 40.000 0.00 0.00 0.00 2.44
6488 9711 5.310451 TGACTTTACCGACCTTGCTATTTT 58.690 37.500 0.00 0.00 0.00 1.82
6554 9782 7.159372 TGTTACTAAATTCTGTCAAGAGGACC 58.841 38.462 0.00 0.00 46.38 4.46
6617 10236 7.984050 TCTCTCTATGAACAGCTTTAGGAAATG 59.016 37.037 0.00 0.00 0.00 2.32
6671 10290 7.277098 GGTTCAGTAGTTAATTCTGAATGCGTA 59.723 37.037 16.76 0.00 45.55 4.42
6674 10293 7.377766 TGGTTCAGTAGTTAATTCTGAATGC 57.622 36.000 16.76 9.37 45.55 3.56
6686 10640 6.549736 ACAAAAATAGCCTTGGTTCAGTAGTT 59.450 34.615 0.00 0.00 0.00 2.24
6777 10750 1.079612 GGCACTTTTGATGCTGGCC 60.080 57.895 0.00 0.00 42.93 5.36
6780 10753 1.067364 TGTGTGGCACTTTTGATGCTG 59.933 47.619 19.83 0.00 42.93 4.41
6786 10759 1.955778 TCTGGATGTGTGGCACTTTTG 59.044 47.619 19.83 3.05 35.11 2.44
6797 10770 8.137437 AGTAAAACAAAGTGAAATCTGGATGTG 58.863 33.333 0.00 0.00 0.00 3.21
6800 10773 8.237811 ACAGTAAAACAAAGTGAAATCTGGAT 57.762 30.769 0.00 0.00 0.00 3.41
6812 10785 8.899771 TCCCTTCTCTAAAACAGTAAAACAAAG 58.100 33.333 0.00 0.00 0.00 2.77
6817 10790 7.751646 TCCATCCCTTCTCTAAAACAGTAAAA 58.248 34.615 0.00 0.00 0.00 1.52
6819 10792 6.945636 TCCATCCCTTCTCTAAAACAGTAA 57.054 37.500 0.00 0.00 0.00 2.24
6820 10793 6.500751 AGTTCCATCCCTTCTCTAAAACAGTA 59.499 38.462 0.00 0.00 0.00 2.74
6821 10794 5.310857 AGTTCCATCCCTTCTCTAAAACAGT 59.689 40.000 0.00 0.00 0.00 3.55
6822 10795 5.810095 AGTTCCATCCCTTCTCTAAAACAG 58.190 41.667 0.00 0.00 0.00 3.16
6823 10796 5.280521 GGAGTTCCATCCCTTCTCTAAAACA 60.281 44.000 0.00 0.00 35.64 2.83
6824 10797 5.186942 GGAGTTCCATCCCTTCTCTAAAAC 58.813 45.833 0.00 0.00 35.64 2.43
6909 13328 6.938507 AGATTCAGCAGCAAAATTTCCATTA 58.061 32.000 0.00 0.00 0.00 1.90
6912 13331 4.813027 GAGATTCAGCAGCAAAATTTCCA 58.187 39.130 0.00 0.00 0.00 3.53


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.